Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707080 | XP_024628370.1 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.27e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707080 | sp|Q8QZZ7|TPRKB_MOUSE | 32.927 | 164 | 104 | 3 | 12 | 172 | 15 | 175 | 3.73e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707080 | I3S9S0 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 1.56e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707080 | Msa1133490 | 0.978753 | 1.725834e-146 | -8.615850e-47 |
| Msa0707080 | Msa1462500 | 0.802344 | 5.864895e-49 | -8.615850e-47 |
| Msa0461640 | Msa0707080 | 0.811280 | 7.574545e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707080 | MtrunA17_Chr8g0388681 | 98.256 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.01e-120 | 336 |
| Msa0707080 | MtrunA17_Chr2g0333941 | 80.153 | 131 | 23 | 1 | 30 | 160 | 1 | 128 | 4.50e-68 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707080 | AT4G34412.1 | 72.674 | 172 | 47 | 0 | 1 | 172 | 1 | 172 | 1.77e-86 | 251 |
Find 65 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTATGAGTAGCATAATTT+CGG | 0.239297 | 4_4:-80295626 | None:intergenic |
| TCATCATAACTAATGTTTAA+TGG | 0.269373 | 4_4:-80295416 | None:intergenic |
| TGTTTCTTGCAGGGAACTAT+TGG | 0.280671 | 4_4:+80294454 | Msa0707080:intron |
| GGACTCTAACTTATAAGATT+TGG | 0.292724 | 4_4:+80295663 | Msa0707080:three_prime_UTR |
| ATCAAGTAAATGAATGATTA+AGG | 0.310549 | 4_4:-80295690 | None:intergenic |
| CATAGCGGGAAGTTATATTA+TGG | 0.326765 | 4_4:+80295642 | Msa0707080:three_prime_UTR |
| TAAATACATAATTACATGTT+TGG | 0.329858 | 4_4:-80294838 | None:intergenic |
| CGTCATTTACTTGTGTCAAT+AGG | 0.344791 | 4_4:+80295574 | Msa0707080:three_prime_UTR |
| GCTAGAACAGGGAAAATATC+TGG | 0.361800 | 4_4:-80294726 | None:intergenic |
| TCCAATGACGAGTTTCTCTA+TGG | 0.365136 | 4_4:-80295098 | None:intergenic |
| TTAGTTATGATGAGATATTA+TGG | 0.373161 | 4_4:+80295426 | Msa0707080:three_prime_UTR |
| GAGAAAGACTAACTTTGAAT+TGG | 0.376103 | 4_4:-80293026 | None:intergenic |
| AAGATATCTGCCTTGGAACT+TGG | 0.384569 | 4_4:+80295259 | Msa0707080:CDS |
| GCGTTGAGGAATGCAACTTC+TGG | 0.407224 | 4_4:-80294503 | None:intergenic |
| AAGCATGCAAGCTGGGACAT+TGG | 0.416752 | 4_4:+80294478 | Msa0707080:CDS |
| GCTATGAGTAGCATAATTTC+GGG | 0.420230 | 4_4:-80295625 | None:intergenic |
| CTCTCCCTTTCAGCTCCTCT+AGG | 0.421727 | 4_4:-80295132 | None:intergenic |
| TTGTGTGCAGCTGCTAGAAC+AGG | 0.422005 | 4_4:-80294738 | None:intergenic |
| GCTCCTAGCCTTATCGTGTA+AGG | 0.430881 | 4_4:+80295370 | Msa0707080:three_prime_UTR |
| GCCATAGAGAAACTCGTCAT+TGG | 0.436847 | 4_4:+80295097 | Msa0707080:CDS |
| TAGAATCTTCTCACCTCATC+AGG | 0.444275 | 4_4:-80295001 | None:intergenic |
| TAAATCATCCTTACACGATA+AGG | 0.446094 | 4_4:-80295378 | None:intergenic |
| AAGCATCACGAGCAGCTATT+CGG | 0.464580 | 4_4:-80295312 | None:intergenic |
| AAATCGAGCAGCAAGGATAT+AGG | 0.479316 | 4_4:-80294969 | None:intergenic |
| GCATTACAAGATATCTGCCT+TGG | 0.484266 | 4_4:+80295252 | Msa0707080:intron |
| AAATTATAGTAGTTGAGAGT+TGG | 0.485512 | 4_4:+80295736 | Msa0707080:three_prime_UTR |
| TAGTAGTTGAGAGTTGGTAA+TGG | 0.488735 | 4_4:+80295742 | Msa0707080:three_prime_UTR |
| TAACGGTTGTTAACTGCCGC+TGG | 0.499306 | 4_4:+80295543 | Msa0707080:three_prime_UTR |
| AAGCTCATCGACGACATCAA+TGG | 0.499776 | 4_4:+80292968 | Msa0707080:CDS |
| TTGACCTAGAGGAGCTGAAA+GGG | 0.500088 | 4_4:+80295128 | Msa0707080:CDS |
| GATGTCGTCGATGAGCTTCA+TGG | 0.510473 | 4_4:-80292963 | None:intergenic |
| AAATATGCTTTGCGACAAGA+TGG | 0.511086 | 4_4:-80295476 | None:intergenic |
| CGAAATTATGCTACTCATAG+CGG | 0.513273 | 4_4:+80295627 | Msa0707080:three_prime_UTR |
| AACCCTATTACTATTAGGTA+GGG | 0.513798 | 4_4:+80292899 | None:intergenic |
| AGTAAATGAATGATTAAGGC+AGG | 0.531386 | 4_4:-80295686 | None:intergenic |
| AACGGTTGTTAACTGCCGCT+GGG | 0.539675 | 4_4:+80295544 | Msa0707080:three_prime_UTR |
| TATTGGAAAGCATGCAAGCT+GGG | 0.540353 | 4_4:+80294471 | Msa0707080:CDS |
| CTATTGGAAAGCATGCAAGC+TGG | 0.542148 | 4_4:+80294470 | Msa0707080:CDS |
| AAACCTGCCCCAGATACAAA+AGG | 0.559565 | 4_4:+80295156 | Msa0707080:CDS |
| GGTCAAAGAGTCCCGTGACT+TGG | 0.561465 | 4_4:-80294772 | None:intergenic |
| GAGCTCGTTTACAACTACTC+AGG | 0.561880 | 4_4:+80294813 | Msa0707080:CDS |
| CATCCTTACACGATAAGGCT+AGG | 0.574939 | 4_4:-80295373 | None:intergenic |
| GAAATTATGCTACTCATAGC+GGG | 0.575495 | 4_4:+80295628 | Msa0707080:three_prime_UTR |
| ACCCTATTACTATTAGGTAG+GGG | 0.579867 | 4_4:+80292900 | None:intergenic |
| GACACTTGTAACCAAGTCAC+GGG | 0.585819 | 4_4:+80294761 | Msa0707080:CDS |
| TGAGTAGTTGTAAACGAGCT+CGG | 0.589663 | 4_4:-80294811 | None:intergenic |
| ATTGACCTAGAGGAGCTGAA+AGG | 0.592410 | 4_4:+80295127 | Msa0707080:CDS |
| GAACACTTTGTAGTAACTGC+CGG | 0.593555 | 4_4:+80295511 | Msa0707080:three_prime_UTR |
| TGATGATATTCCAAGTTCCA+AGG | 0.603203 | 4_4:-80295269 | None:intergenic |
| CCCTATTACTATTAGGTAGG+GGG | 0.613513 | 4_4:+80292901 | None:intergenic |
| TGGAAAAGAGATTGACCTAG+AGG | 0.624141 | 4_4:+80295117 | Msa0707080:CDS |
| AATTGGTGACGTCTGTGTAG+AGG | 0.624172 | 4_4:-80293009 | None:intergenic |
| AGACACTTGTAACCAAGTCA+CGG | 0.624915 | 4_4:+80294760 | Msa0707080:CDS |
| ATTATACAAGTGAAGCGTTG+AGG | 0.626795 | 4_4:-80294517 | None:intergenic |
| AGCTCGTTTACAACTACTCA+GGG | 0.627963 | 4_4:+80294814 | Msa0707080:CDS |
| ATTGGTGACGTCTGTGTAGA+GGG | 0.634042 | 4_4:-80293008 | None:intergenic |
| CTCGGAATGAAGAGTGCGTG+TGG | 0.636758 | 4_4:-80294793 | None:intergenic |
| ACAACCGTTAGTCTAAGTGC+CGG | 0.637787 | 4_4:-80295530 | None:intergenic |
| ATTTGATGCTACTCCTGATG+AGG | 0.656826 | 4_4:+80294988 | Msa0707080:CDS |
| TGTGTGCAGCTGCTAGAACA+GGG | 0.668610 | 4_4:-80294737 | None:intergenic |
| TAGCATCAAATCGAGCAGCA+AGG | 0.669820 | 4_4:-80294976 | None:intergenic |
| ACTGCCGGCACTTAGACTAA+CGG | 0.672983 | 4_4:+80295526 | Msa0707080:three_prime_UTR |
| ACGGTTGTTAACTGCCGCTG+GGG | 0.685528 | 4_4:+80295545 | Msa0707080:three_prime_UTR |
| GTAGAGGGAGAGACAGAGAG+TGG | 0.695759 | 4_4:-80292993 | None:intergenic |
| CGTCGATGAGCTTCATGGTG+CGG | 0.713327 | 4_4:-80292958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATTAACTTAAAAC+GGG | - | chr4_4:80293222-80293241 | None:intergenic | 10.0% |
| !!! | TATTTATATTTAACTTGTTA+TGG | + | chr4_4:80294855-80294874 | Msa0707080:intron | 10.0% |
| !!! | GAGAAAATGATAATTTTTAT+AGG | - | chr4_4:80293094-80293113 | None:intergenic | 15.0% |
| !! | AAAAAATTAAAAATTGGGTT+TGG | - | chr4_4:80293803-80293822 | None:intergenic | 15.0% |
| !! | TAAATACATAATTACATGTT+TGG | - | chr4_4:80294841-80294860 | None:intergenic | 15.0% |
| !! | ATAAGAGCAATATATGAATT+TGG | + | chr4_4:80293271-80293290 | Msa0707080:intron | 20.0% |
| !! | TGACAGTTTGAAAAATATTA+AGG | - | chr4_4:80293924-80293943 | None:intergenic | 20.0% |
| !!! | GTATATCTACTTTTATAGAT+TGG | - | chr4_4:80294346-80294365 | None:intergenic | 20.0% |
| !! | TGTAATTGATCCATAAAATT+AGG | + | chr4_4:80294398-80294417 | Msa0707080:intron | 20.0% |
| !! | AAATTATTGAATATGCTAGT+TGG | - | chr4_4:80295221-80295240 | None:intergenic | 20.0% |
| !! | TCATCATAACTAATGTTTAA+TGG | - | chr4_4:80295419-80295438 | None:intergenic | 20.0% |
| !! | TTAGTTATGATGAGATATTA+TGG | + | chr4_4:80295426-80295445 | Msa0707080:three_prime_UTR | 20.0% |
| !! | ATCAAGTAAATGAATGATTA+AGG | - | chr4_4:80295693-80295712 | None:intergenic | 20.0% |
| ! | GTACTCTTACACTTTAAATT+TGG | - | chr4_4:80293320-80293339 | None:intergenic | 25.0% |
| !!! | GTAATATTTTCAAGTGTTAG+TGG | + | chr4_4:80293364-80293383 | Msa0707080:intron | 25.0% |
| ! | AGCTCTTATTATTTATAGTG+TGG | - | chr4_4:80293438-80293457 | None:intergenic | 25.0% |
| ! | CTATAAATAATAAGAGCTCA+TGG | + | chr4_4:80293440-80293459 | Msa0707080:intron | 25.0% |
| ! | ATGTTCTATTGTTATACTTG+TGG | - | chr4_4:80293643-80293662 | None:intergenic | 25.0% |
| ! | TATATGTAACTATGCAACAT+AGG | + | chr4_4:80293956-80293975 | Msa0707080:intron | 25.0% |
| ! | CTGAAATTAGAAACTTTAAC+TGG | - | chr4_4:80294890-80294909 | None:intergenic | 25.0% |
| !! | ACTGAATCTTTAAAAAGATG+TGG | + | chr4_4:80294929-80294948 | Msa0707080:CDS | 25.0% |
| ! | GAAGATTCTACAGTAAAATA+TGG | + | chr4_4:80295014-80295033 | Msa0707080:intron | 25.0% |
| ! | AAATTATAGTAGTTGAGAGT+TGG | + | chr4_4:80295736-80295755 | Msa0707080:three_prime_UTR | 25.0% |
| GAGAAAGACTAACTTTGAAT+TGG | - | chr4_4:80293029-80293048 | None:intergenic | 30.0% | |
| GATGAGAAACACTTAATTCT+CGG | - | chr4_4:80293200-80293219 | None:intergenic | 30.0% | |
| GGAGAAATTATAGGAACATT+TGG | + | chr4_4:80293390-80293409 | Msa0707080:intron | 30.0% | |
| AAATAATAAGAGCTCATGGA+TGG | + | chr4_4:80293444-80293463 | Msa0707080:intron | 30.0% | |
| CTACATATTCTCTTGTGAAT+TGG | - | chr4_4:80293494-80293513 | None:intergenic | 30.0% | |
| CAATTCACAAGAGAATATGT+AGG | + | chr4_4:80293492-80293511 | Msa0707080:intron | 30.0% | |
| TATACTTGTGGTAAGTACAA+GGG | - | chr4_4:80293631-80293650 | None:intergenic | 30.0% | |
| TTATACTTGTGGTAAGTACA+AGG | - | chr4_4:80293632-80293651 | None:intergenic | 30.0% | |
| !!! | TCAACACTTTTTCACTTCTT+TGG | + | chr4_4:80294031-80294050 | Msa0707080:intron | 30.0% |
| !!! | ACTTTTTCACTTCTTTGGTA+TGG | + | chr4_4:80294036-80294055 | Msa0707080:intron | 30.0% |
| ACTATGGTAAATGGTTATCA+GGG | + | chr4_4:80294060-80294079 | Msa0707080:intron | 30.0% | |
| CACTCAATAGCAATATTTGA+TGG | - | chr4_4:80294106-80294125 | None:intergenic | 30.0% | |
| !!! | AACTGACTTTTGAGATTAAG+TGG | - | chr4_4:80294139-80294158 | None:intergenic | 30.0% |
| CCAAATGTTGTGAATAGTTA+TGG | - | chr4_4:80294212-80294231 | None:intergenic | 30.0% | |
| CCATAACTATTCACAACATT+TGG | + | chr4_4:80294209-80294228 | Msa0707080:intron | 30.0% | |
| TATGTAACTATGTTTCTTGC+AGG | + | chr4_4:80294444-80294463 | Msa0707080:intron | 30.0% | |
| ATGTAACTATGTTTCTTGCA+GGG | + | chr4_4:80294445-80294464 | Msa0707080:intron | 30.0% | |
| GATCCTCTATAATTGAATGT+GGG | - | chr4_4:80294552-80294571 | None:intergenic | 30.0% | |
| AGATCCTCTATAATTGAATG+TGG | - | chr4_4:80294553-80294572 | None:intergenic | 30.0% | |
| ATAACATGATCCTCTTATGT+CGG | + | chr4_4:80294598-80294617 | Msa0707080:intron | 30.0% | |
| TAAATCATCCTTACACGATA+AGG | - | chr4_4:80295381-80295400 | None:intergenic | 30.0% | |
| GGACTCTAACTTATAAGATT+TGG | + | chr4_4:80295663-80295682 | Msa0707080:three_prime_UTR | 30.0% | |
| AGTAAATGAATGATTAAGGC+AGG | - | chr4_4:80295689-80295708 | None:intergenic | 30.0% | |
| !!! | TCTTTTCTAGCTTTGTAGTT+TGG | + | chr4_4:80295713-80295732 | Msa0707080:three_prime_UTR | 30.0% |
| ! | TTATCATTTTCTCTTACCGC+CGG | + | chr4_4:80293101-80293120 | Msa0707080:intron | 35.0% |
| ACTGAAGCAATAAAGTAAGC+CGG | - | chr4_4:80293123-80293142 | None:intergenic | 35.0% | |
| ! | GTTGCTTTGCATATTTAGTC+CGG | + | chr4_4:80293155-80293174 | Msa0707080:intron | 35.0% |
| ACGATGTCAAGTAAGTTCTT+TGG | - | chr4_4:80293346-80293365 | None:intergenic | 35.0% | |
| !!! | ATTTTCAAGTGTTAGTGGAC+TGG | + | chr4_4:80293369-80293388 | Msa0707080:intron | 35.0% |
| !! | TAGTGGACTGGAGAAATTAT+AGG | + | chr4_4:80293381-80293400 | Msa0707080:intron | 35.0% |
| TTATAGTGTGGAGAGTTAGT+GGG | - | chr4_4:80293426-80293445 | None:intergenic | 35.0% | |
| TTTATAGTGTGGAGAGTTAG+TGG | - | chr4_4:80293427-80293446 | None:intergenic | 35.0% | |
| ATGTAGCTAATCCCATTTAG+TGG | + | chr4_4:80293681-80293700 | Msa0707080:intron | 35.0% | |
| TGTAGCTAATCCCATTTAGT+GGG | + | chr4_4:80293682-80293701 | Msa0707080:intron | 35.0% | |
| ! | CAAGTCTTATCCCACTAAAT+GGG | - | chr4_4:80293695-80293714 | None:intergenic | 35.0% |
| ACATAGGATAACTATCAACG+AGG | + | chr4_4:80293972-80293991 | Msa0707080:intron | 35.0% | |
| CACTATGGTAAATGGTTATC+AGG | + | chr4_4:80294059-80294078 | Msa0707080:intron | 35.0% | |
| !! | AGAGCTGGTTCCTAATTTTA+TGG | - | chr4_4:80294411-80294430 | None:intergenic | 35.0% |
| !! | ATTATACAAGTGAAGCGTTG+AGG | - | chr4_4:80294520-80294539 | None:intergenic | 35.0% |
| TGACCCACATTCAATTATAG+AGG | + | chr4_4:80294546-80294565 | Msa0707080:intron | 35.0% | |
| ATACAAGTCCTAGCATCATT+CGG | - | chr4_4:80294636-80294655 | None:intergenic | 35.0% | |
| ! | TGACAAACCTTTTGTATCTG+GGG | - | chr4_4:80295166-80295185 | None:intergenic | 35.0% |
| ! | CTGACAAACCTTTTGTATCT+GGG | - | chr4_4:80295167-80295186 | None:intergenic | 35.0% |
| CAGATACAAAAGGTTTGTCA+GGG | + | chr4_4:80295166-80295185 | Msa0707080:intron | 35.0% | |
| TATGCTAGTTGGCACAAAAA+AGG | - | chr4_4:80295210-80295229 | None:intergenic | 35.0% | |
| TGATGATATTCCAAGTTCCA+AGG | - | chr4_4:80295272-80295291 | None:intergenic | 35.0% | |
| AAATATGCTTTGCGACAAGA+TGG | - | chr4_4:80295479-80295498 | None:intergenic | 35.0% | |
| CGTCATTTACTTGTGTCAAT+AGG | + | chr4_4:80295574-80295593 | Msa0707080:three_prime_UTR | 35.0% | |
| GCTATGAGTAGCATAATTTC+GGG | - | chr4_4:80295628-80295647 | None:intergenic | 35.0% | |
| CGCTATGAGTAGCATAATTT+CGG | - | chr4_4:80295629-80295648 | None:intergenic | 35.0% | |
| CGAAATTATGCTACTCATAG+CGG | + | chr4_4:80295627-80295646 | Msa0707080:three_prime_UTR | 35.0% | |
| GAAATTATGCTACTCATAGC+GGG | + | chr4_4:80295628-80295647 | Msa0707080:three_prime_UTR | 35.0% | |
| ! | CATAGCGGGAAGTTATATTA+TGG | + | chr4_4:80295642-80295661 | Msa0707080:three_prime_UTR | 35.0% |
| !! | TAGTAGTTGAGAGTTGGTAA+TGG | + | chr4_4:80295742-80295761 | Msa0707080:three_prime_UTR | 35.0% |
| TTTGCATATTTAGTCCGGAC+TGG | + | chr4_4:80293160-80293179 | Msa0707080:intron | 40.0% | |
| ACTTAATTCTCGGTCTGGAT+TGG | - | chr4_4:80293190-80293209 | None:intergenic | 40.0% | |
| GAAACACTTAATTCTCGGTC+TGG | - | chr4_4:80293195-80293214 | None:intergenic | 40.0% | |
| ACAAGAGAATATGTAGGACG+AGG | + | chr4_4:80293498-80293517 | Msa0707080:intron | 40.0% | |
| CAAGAGAATATGTAGGACGA+GGG | + | chr4_4:80293499-80293518 | Msa0707080:intron | 40.0% | |
| !!! | ATTTTGATTGTAGCGCGACA+GGG | - | chr4_4:80293529-80293548 | None:intergenic | 40.0% |
| !!! | TATTTTGATTGTAGCGCGAC+AGG | - | chr4_4:80293530-80293549 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCCCACTAAA+TGG | - | chr4_4:80293696-80293715 | None:intergenic | 40.0% |
| CCATTTAGTGGGATAAGACT+TGG | + | chr4_4:80293693-80293712 | Msa0707080:intron | 40.0% | |
| ACTTCTTTGGTATGGCACTA+TGG | + | chr4_4:80294044-80294063 | Msa0707080:intron | 40.0% | |
| TGGTATGGCACTATGGTAAA+TGG | + | chr4_4:80294051-80294070 | Msa0707080:intron | 40.0% | |
| !! | CTATTCACAACATTTGGTGC+TGG | + | chr4_4:80294215-80294234 | Msa0707080:intron | 40.0% |
| CCATCTTGATTAGGAGGAAT+CGG | - | chr4_4:80294287-80294306 | None:intergenic | 40.0% | |
| TTGCAATCGCCATCTTGATT+AGG | - | chr4_4:80294296-80294315 | None:intergenic | 40.0% | |
| TAAACACTTCAGCTAAGAGC+TGG | - | chr4_4:80294426-80294445 | None:intergenic | 40.0% | |
| TGTTTCTTGCAGGGAACTAT+TGG | + | chr4_4:80294454-80294473 | Msa0707080:intron | 40.0% | |
| ! | TATTGGAAAGCATGCAAGCT+GGG | + | chr4_4:80294471-80294490 | Msa0707080:CDS | 40.0% |
| TCTCTCATTACCGACATAAG+AGG | - | chr4_4:80294611-80294630 | None:intergenic | 40.0% | |
| ! | CAGGGAAAATATCTGGAATC+TGG | - | chr4_4:80294722-80294741 | None:intergenic | 40.0% |
| GCTAGAACAGGGAAAATATC+TGG | - | chr4_4:80294729-80294748 | None:intergenic | 40.0% | |
| AGACACTTGTAACCAAGTCA+CGG | + | chr4_4:80294760-80294779 | Msa0707080:CDS | 40.0% | |
| TGAGTAGTTGTAAACGAGCT+CGG | - | chr4_4:80294814-80294833 | None:intergenic | 40.0% | |
| AGCTCGTTTACAACTACTCA+GGG | + | chr4_4:80294814-80294833 | Msa0707080:CDS | 40.0% | |
| AAATCGAGCAGCAAGGATAT+AGG | - | chr4_4:80294972-80294991 | None:intergenic | 40.0% | |
| ATTTGATGCTACTCCTGATG+AGG | + | chr4_4:80294988-80295007 | Msa0707080:CDS | 40.0% | |
| TAGAATCTTCTCACCTCATC+AGG | - | chr4_4:80295004-80295023 | None:intergenic | 40.0% | |
| TCCAATGACGAGTTTCTCTA+TGG | - | chr4_4:80295101-80295120 | None:intergenic | 40.0% | |
| TGGAAAAGAGATTGACCTAG+AGG | + | chr4_4:80295117-80295136 | Msa0707080:CDS | 40.0% | |
| ! | CCTGACAAACCTTTTGTATC+TGG | - | chr4_4:80295168-80295187 | None:intergenic | 40.0% |
| CCAGATACAAAAGGTTTGTC+AGG | + | chr4_4:80295165-80295184 | Msa0707080:intron | 40.0% | |
| GCATTACAAGATATCTGCCT+TGG | + | chr4_4:80295252-80295271 | Msa0707080:intron | 40.0% | |
| AAGATATCTGCCTTGGAACT+TGG | + | chr4_4:80295259-80295278 | Msa0707080:CDS | 40.0% | |
| GAACACTTTGTAGTAACTGC+CGG | + | chr4_4:80295511-80295530 | Msa0707080:three_prime_UTR | 40.0% | |
| ! | AAATGACGTTTTTACCCCAG+CGG | - | chr4_4:80295562-80295581 | None:intergenic | 40.0% |
| GTCGAACAGAACAGAAGAGA+AGG | + | chr4_4:80292923-80292942 | Msa0707080:intron | 45.0% | |
| AAGCTCATCGACGACATCAA+TGG | + | chr4_4:80292968-80292987 | Msa0707080:CDS | 45.0% | |
| !! | ATTGGTGACGTCTGTGTAGA+GGG | - | chr4_4:80293011-80293030 | None:intergenic | 45.0% |
| !! | AATTGGTGACGTCTGTGTAG+AGG | - | chr4_4:80293012-80293031 | None:intergenic | 45.0% |
| GAAGCAATAAAGTAAGCCGG+CGG | - | chr4_4:80293120-80293139 | None:intergenic | 45.0% | |
| TCTTGTGAATTGGCGATGTG+GGG | - | chr4_4:80293484-80293503 | None:intergenic | 45.0% | |
| CTCTTGTGAATTGGCGATGT+GGG | - | chr4_4:80293485-80293504 | None:intergenic | 45.0% | |
| TCTCTTGTGAATTGGCGATG+TGG | - | chr4_4:80293486-80293505 | None:intergenic | 45.0% | |
| ! | GCTTTGAGCTAAAGGGATCT+TGG | - | chr4_4:80293576-80293595 | None:intergenic | 45.0% |
| !! | GAGAGGAGCTTTGAGCTAAA+GGG | - | chr4_4:80293583-80293602 | None:intergenic | 45.0% |
| !! | TGAGAGGAGCTTTGAGCTAA+AGG | - | chr4_4:80293584-80293603 | None:intergenic | 45.0% |
| !! | GGGAGTGTGCTTGATTTTAG+TGG | + | chr4_4:80294080-80294099 | Msa0707080:intron | 45.0% |
| CCGATTCCTCCTAATCAAGA+TGG | + | chr4_4:80294284-80294303 | Msa0707080:intron | 45.0% | |
| CAATCGCCATCTTGATTAGG+AGG | - | chr4_4:80294293-80294312 | None:intergenic | 45.0% | |
| ! | CTATTGGAAAGCATGCAAGC+TGG | + | chr4_4:80294470-80294489 | Msa0707080:CDS | 45.0% |
| GAGAGAATCCGAATGATGCT+AGG | + | chr4_4:80294625-80294644 | Msa0707080:intron | 45.0% | |
| GACACTTGTAACCAAGTCAC+GGG | + | chr4_4:80294761-80294780 | Msa0707080:CDS | 45.0% | |
| GAGCTCGTTTACAACTACTC+AGG | + | chr4_4:80294813-80294832 | Msa0707080:CDS | 45.0% | |
| TAGCATCAAATCGAGCAGCA+AGG | - | chr4_4:80294979-80294998 | None:intergenic | 45.0% | |
| GCCATAGAGAAACTCGTCAT+TGG | + | chr4_4:80295097-80295116 | Msa0707080:CDS | 45.0% | |
| ATTGACCTAGAGGAGCTGAA+AGG | + | chr4_4:80295127-80295146 | Msa0707080:CDS | 45.0% | |
| TTGACCTAGAGGAGCTGAAA+GGG | + | chr4_4:80295128-80295147 | Msa0707080:CDS | 45.0% | |
| AAACCTGCCCCAGATACAAA+AGG | + | chr4_4:80295156-80295175 | Msa0707080:CDS | 45.0% | |
| !! | AAACCTTTTGTATCTGGGGC+AGG | - | chr4_4:80295162-80295181 | None:intergenic | 45.0% |
| AAGCATCACGAGCAGCTATT+CGG | - | chr4_4:80295315-80295334 | None:intergenic | 45.0% | |
| CATCCTTACACGATAAGGCT+AGG | - | chr4_4:80295376-80295395 | None:intergenic | 45.0% | |
| ! | ACAACCGTTAGTCTAAGTGC+CGG | - | chr4_4:80295533-80295552 | None:intergenic | 45.0% |
| !! | TAATAATAATTAACTTAAAA+CGG | - | chr4_4:80293223-80293242 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAATTAAAAATT+GGG | - | chr4_4:80293808-80293827 | None:intergenic | 5.0% |
| !! | AAGTTTAAAAAATTAAAAAT+TGG | - | chr4_4:80293809-80293828 | None:intergenic | 5.0% |
| GATGTCGTCGATGAGCTTCA+TGG | - | chr4_4:80292966-80292985 | None:intergenic | 50.0% | |
| !! | CATATTTAGTCCGGACTGGC+CGG | + | chr4_4:80293164-80293183 | Msa0707080:intron | 50.0% |
| !! | AATTCTCGGTCTGGATTGGC+CGG | - | chr4_4:80293186-80293205 | None:intergenic | 50.0% |
| CAGCAGTGAGCAGTAAGGTT+GGG | - | chr4_4:80293553-80293572 | None:intergenic | 50.0% | |
| AAAGCTCCTCTCACCACCAA+GGG | + | chr4_4:80293591-80293610 | Msa0707080:intron | 50.0% | |
| AAGCATGCAAGCTGGGACAT+TGG | + | chr4_4:80294478-80294497 | Msa0707080:CDS | 50.0% | |
| GCGTTGAGGAATGCAACTTC+TGG | - | chr4_4:80294506-80294525 | None:intergenic | 50.0% | |
| TCTGGTGCAGTTGAGAACAG+TGG | - | chr4_4:80294704-80294723 | None:intergenic | 50.0% | |
| TGTGTGCAGCTGCTAGAACA+GGG | - | chr4_4:80294740-80294759 | None:intergenic | 50.0% | |
| TTGTGTGCAGCTGCTAGAAC+AGG | - | chr4_4:80294741-80294760 | None:intergenic | 50.0% | |
| !! | GCTCCTAGCCTTATCGTGTA+AGG | + | chr4_4:80295370-80295389 | Msa0707080:three_prime_UTR | 50.0% |
| ACTGCCGGCACTTAGACTAA+CGG | + | chr4_4:80295526-80295545 | Msa0707080:three_prime_UTR | 50.0% | |
| TAACGGTTGTTAACTGCCGC+TGG | + | chr4_4:80295543-80295562 | Msa0707080:three_prime_UTR | 50.0% | |
| AACGGTTGTTAACTGCCGCT+GGG | + | chr4_4:80295544-80295563 | Msa0707080:three_prime_UTR | 50.0% | |
| CGTCGATGAGCTTCATGGTG+CGG | - | chr4_4:80292961-80292980 | None:intergenic | 55.0% | |
| GTAGAGGGAGAGACAGAGAG+TGG | - | chr4_4:80292996-80293015 | None:intergenic | 55.0% | |
| GAGAGTTAGTGGGAGTGGTG+AGG | - | chr4_4:80293416-80293435 | None:intergenic | 55.0% | |
| GTGTGGAGAGTTAGTGGGAG+TGG | - | chr4_4:80293421-80293440 | None:intergenic | 55.0% | |
| TTGATTGTAGCGCGACAGGG+AGG | - | chr4_4:80293526-80293545 | None:intergenic | 55.0% | |
| GCAGCAGTGAGCAGTAAGGT+TGG | - | chr4_4:80293554-80293573 | None:intergenic | 55.0% | |
| CTTGGCAGCAGTGAGCAGTA+AGG | - | chr4_4:80293558-80293577 | None:intergenic | 55.0% | |
| CAAAGCTCCTCTCACCACCA+AGG | + | chr4_4:80293590-80293609 | Msa0707080:intron | 55.0% | |
| AAGCTCCTCTCACCACCAAG+GGG | + | chr4_4:80293592-80293611 | Msa0707080:intron | 55.0% | |
| GGTCAAAGAGTCCCGTGACT+TGG | - | chr4_4:80294775-80294794 | None:intergenic | 55.0% | |
| ! | CTCGGAATGAAGAGTGCGTG+TGG | - | chr4_4:80294796-80294815 | None:intergenic | 55.0% |
| CTCTCCCTTTCAGCTCCTCT+AGG | - | chr4_4:80295135-80295154 | None:intergenic | 55.0% | |
| ACGGTTGTTAACTGCCGCTG+GGG | + | chr4_4:80295545-80295564 | Msa0707080:three_prime_UTR | 55.0% | |
| AGCTCCTCTCACCACCAAGG+GGG | + | chr4_4:80293593-80293612 | Msa0707080:intron | 60.0% | |
| !! | TCTGGATTGGCCGGCCAGTC+CGG | - | chr4_4:80293177-80293196 | None:intergenic | 65.0% |
| TCCTCTCACCACCAAGGGGG+AGG | + | chr4_4:80293596-80293615 | Msa0707080:intron | 65.0% | |
| CCTCTCACCACCAAGGGGGA+GGG | + | chr4_4:80293597-80293616 | Msa0707080:intron | 65.0% | |
| CTCTCACCACCAAGGGGGAG+GGG | + | chr4_4:80293598-80293617 | Msa0707080:intron | 65.0% | |
| TCTCACCACCAAGGGGGAGG+GGG | + | chr4_4:80293599-80293618 | Msa0707080:intron | 65.0% | |
| !! | CCCTCCCCCTTGGTGGTGAG+AGG | - | chr4_4:80293600-80293619 | None:intergenic | 70.0% |
| ATCGACCCCCTCCCCCTTGG+TGG | - | chr4_4:80293607-80293626 | None:intergenic | 70.0% | |
| !! | GGCATCGACCCCCTCCCCCT+TGG | - | chr4_4:80293610-80293629 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80292914 | 80295774 | 80292914 | ID=Msa0707080;Name=Msa0707080 |
| chr4_4 | mRNA | 80292914 | 80295774 | 80292914 | ID=Msa0707080-mRNA-1;Parent=Msa0707080;Name=Msa0707080-mRNA-1;_AED=0.10;_eAED=0.10;_QI=30|1|1|1|0.83|0.71|7|435|172 |
| chr4_4 | exon | 80292914 | 80292939 | 80292914 | ID=Msa0707080-mRNA-1:exon:26080;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80292961 | 80293035 | 80292961 | ID=Msa0707080-mRNA-1:exon:26081;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80294466 | 80294532 | 80294466 | ID=Msa0707080-mRNA-1:exon:26082;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80294723 | 80294845 | 80294723 | ID=Msa0707080-mRNA-1:exon:26083;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80294926 | 80295009 | 80294926 | ID=Msa0707080-mRNA-1:exon:26084;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80295091 | 80295177 | 80295091 | ID=Msa0707080-mRNA-1:exon:26085;Parent=Msa0707080-mRNA-1 |
| chr4_4 | exon | 80295253 | 80295774 | 80295253 | ID=Msa0707080-mRNA-1:exon:26086;Parent=Msa0707080-mRNA-1 |
| chr4_4 | five_prime_UTR | 80292914 | 80292939 | 80292914 | ID=Msa0707080-mRNA-1:five_prime_utr;Parent=Msa0707080-mRNA-1 |
| chr4_4 | five_prime_UTR | 80292961 | 80292964 | 80292961 | ID=Msa0707080-mRNA-1:five_prime_utr;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80292965 | 80293035 | 80292965 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80294466 | 80294532 | 80294466 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80294723 | 80294845 | 80294723 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80294926 | 80295009 | 80294926 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80295091 | 80295177 | 80295091 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | CDS | 80295253 | 80295339 | 80295253 | ID=Msa0707080-mRNA-1:cds;Parent=Msa0707080-mRNA-1 |
| chr4_4 | three_prime_UTR | 80295340 | 80295774 | 80295340 | ID=Msa0707080-mRNA-1:three_prime_utr;Parent=Msa0707080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
