Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134820 | OXK38117.1 | 81.250 | 80 | 15 | 0 | 4 | 83 | 41 | 120 | 1.83e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134820 | sp|P07689|RBS3_PEA | 78.481 | 79 | 17 | 0 | 5 | 83 | 99 | 177 | 2.13e-42 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134820 | A0A396GUJ1 | 80.488 | 82 | 16 | 0 | 4 | 85 | 99 | 180 | 1.61e-42 | 148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0439110 | Msa1134820 | 0.876020 | 1.945913e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134820 | MtrunA17_Chr7g0215431 | 80.488 | 82 | 16 | 0 | 4 | 85 | 99 | 180 | 3.11e-46 | 148 |
| Msa1134820 | MtrunA17_Chr7g0215351 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 3.66e-46 | 148 |
| Msa1134820 | MtrunA17_Chr7g0215381 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 4.17e-46 | 148 |
| Msa1134820 | MtrunA17_Chr7g0215361 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 4.26e-46 | 148 |
| Msa1134820 | MtrunA17_Chr7g0215421 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 6.38e-46 | 147 |
| Msa1134820 | MtrunA17_Chr6g0457471 | 81.013 | 79 | 15 | 0 | 5 | 83 | 99 | 177 | 5.78e-45 | 145 |
| Msa1134820 | MtrunA17_Chr6g0457461 | 81.013 | 79 | 15 | 0 | 5 | 83 | 96 | 174 | 1.46e-44 | 144 |
| Msa1134820 | MtrunA17_Chr4g0072241 | 50.000 | 72 | 36 | 0 | 12 | 83 | 96 | 167 | 2.82e-25 | 94.7 |
| Msa1134820 | MtrunA17_Chr7g0215111 | 58.333 | 72 | 26 | 2 | 75 | 145 | 3 | 71 | 1.15e-18 | 75.5 |
| Msa1134820 | MtrunA17_Chr3g0080851 | 63.934 | 61 | 22 | 0 | 85 | 145 | 8 | 68 | 4.75e-18 | 78.6 |
| Msa1134820 | MtrunA17_Chr3g0084891 | 64.912 | 57 | 20 | 0 | 89 | 145 | 11 | 67 | 3.68e-16 | 72.8 |
| Msa1134820 | MtrunA17_Chr3g0084901 | 64.912 | 57 | 20 | 0 | 89 | 145 | 11 | 67 | 6.57e-16 | 72.8 |
| Msa1134820 | MtrunA17_Chr7g0225071 | 68.519 | 54 | 16 | 1 | 93 | 145 | 2 | 55 | 4.39e-15 | 70.5 |
| Msa1134820 | MtrunA17_Chr7g0223091 | 66.667 | 54 | 17 | 1 | 93 | 145 | 2 | 55 | 1.85e-14 | 68.6 |
| Msa1134820 | MtrunA17_Chr6g0471071 | 54.167 | 72 | 28 | 2 | 75 | 145 | 2 | 69 | 4.70e-14 | 67.8 |
| Msa1134820 | MtrunA17_Chr2g0315111 | 59.677 | 62 | 24 | 1 | 85 | 145 | 9 | 70 | 6.14e-14 | 67.4 |
| Msa1134820 | MtrunA17_Chr3g0084911 | 62.264 | 53 | 20 | 0 | 93 | 145 | 2 | 54 | 7.02e-14 | 67.0 |
| Msa1134820 | MtrunA17_Chr3g0084611 | 66.038 | 53 | 17 | 1 | 93 | 145 | 2 | 53 | 2.36e-13 | 65.5 |
| Msa1134820 | MtrunA17_Chr3g0084601 | 60.377 | 53 | 21 | 0 | 93 | 145 | 2 | 54 | 3.07e-13 | 65.5 |
| Msa1134820 | MtrunA17_Chr6g0471151 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471131 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471101 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471141 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471081 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 6.03e-13 | 63.9 |
| Msa1134820 | MtrunA17_Chr6g0471111 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 8.07e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471091 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 8.15e-13 | 64.3 |
| Msa1134820 | MtrunA17_Chr6g0471171 | 62.963 | 54 | 19 | 1 | 93 | 145 | 2 | 55 | 9.52e-13 | 63.9 |
| Msa1134820 | MtrunA17_Chr6g0471121 | 50.685 | 73 | 31 | 2 | 75 | 146 | 2 | 70 | 1.12e-12 | 63.9 |
| Msa1134820 | MtrunA17_Chr6g0471161 | 50.685 | 73 | 31 | 2 | 75 | 146 | 2 | 70 | 1.12e-12 | 63.9 |
| Msa1134820 | MtrunA17_Chr3g0084591 | 66.667 | 45 | 15 | 0 | 101 | 145 | 12 | 56 | 2.89e-11 | 59.7 |
| Msa1134820 | MtrunA17_Chr3g0084581 | 66.667 | 45 | 15 | 0 | 101 | 145 | 12 | 56 | 2.97e-11 | 59.7 |
| Msa1134820 | MtrunA17_Chr6g0471061 | 57.407 | 54 | 22 | 1 | 93 | 145 | 2 | 55 | 8.08e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134820 | AT1G67090.1 | 70.000 | 80 | 24 | 0 | 5 | 84 | 97 | 176 | 3.81e-38 | 128 |
| Msa1134820 | AT5G38410.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 1.49e-37 | 127 |
| Msa1134820 | AT5G38420.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.04e-37 | 126 |
| Msa1134820 | AT5G38430.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.09e-37 | 126 |
| Msa1134820 | AT5G38430.2 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.09e-37 | 126 |
| Msa1134820 | AT5G38410.3 | 73.973 | 73 | 19 | 0 | 12 | 84 | 109 | 181 | 2.65e-37 | 126 |
| Msa1134820 | AT5G38410.2 | 72.059 | 68 | 19 | 0 | 17 | 84 | 102 | 169 | 4.79e-33 | 115 |
Find 23 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACAAAATTCAATGAT+TGG | 0.329151 | 7_4:-1458708 | None:intergenic |
| GAAGAAGGTTATGTTCATAA+TGG | 0.333247 | 7_4:+1464148 | Msa1134820:CDS |
| GGTACTATGACGGACGTTAC+TGG | 0.352983 | 7_4:+1460140 | Msa1134820:CDS |
| TTGAACAAAATTCAATGATT+GGG | 0.379892 | 7_4:-1458707 | None:intergenic |
| ATGTGGAAGTTGCCTTTGTT+TGG | 0.411503 | 7_4:+1460166 | Msa1134820:CDS |
| TGATGTTTCTCAAGTGTTGA+AGG | 0.415692 | 7_4:+1460195 | Msa1134820:CDS |
| AAGAAGGTTATGTTCATAAT+GGG | 0.419211 | 7_4:+1464149 | Msa1134820:CDS |
| ATGATACGGACAAAGGCATC+AGG | 0.443523 | 7_4:-1460244 | None:intergenic |
| GATGCCTTTGTCCGTATCAT+CGG | 0.484184 | 7_4:+1460247 | Msa1134820:CDS |
| TTGAATTGATGATTTCATAG+AGG | 0.522562 | 7_4:-1464223 | None:intergenic |
| CGTGAGAACCACAATTCACC+AGG | 0.538607 | 7_4:+1460118 | Msa1134820:CDS |
| CATAGTACCCTGGTGAATTG+TGG | 0.548690 | 7_4:-1460126 | None:intergenic |
| GTCGCTAGCTGAAAAGAAGA+AGG | 0.564047 | 7_4:+1464133 | Msa1134820:CDS |
| CATAGTCGAATCCGATGATA+CGG | 0.581215 | 7_4:-1460258 | None:intergenic |
| CTGGTGAATTGTGGTTCTCA+CGG | 0.610345 | 7_4:-1460117 | None:intergenic |
| ACATCAGTTGCTCCAAACAA+AGG | 0.611433 | 7_4:-1460178 | None:intergenic |
| ATAATGGGTGCAACATACAT+CGG | 0.613820 | 7_4:+1464164 | Msa1134820:CDS |
| AATTCACCAGGGTACTATGA+CGG | 0.642388 | 7_4:+1460130 | Msa1134820:CDS |
| TGATACGGACAAAGGCATCA+GGG | 0.656050 | 7_4:-1460243 | None:intergenic |
| TAACGTCCGTCATAGTACCC+TGG | 0.678042 | 7_4:-1460136 | None:intergenic |
| GAATCCGATGATACGGACAA+AGG | 0.687909 | 7_4:-1460251 | None:intergenic |
| ACGGACGTTACTGGACAATG+TGG | 0.708236 | 7_4:+1460149 | Msa1134820:CDS |
| GTGAGAACCACAATTCACCA+GGG | 0.719424 | 7_4:+1460119 | Msa1134820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAATAAATAAAAATCT+TGG | - | chr7_4:1459027-1459046 | None:intergenic | 10.0% |
| !!! | GTAATAGTATTTTAAATATT+TGG | + | chr7_4:1459636-1459655 | Msa1134820:intron | 10.0% |
| !! | ATTAAAAACAAAATATTTGT+AGG | - | chr7_4:1459669-1459688 | None:intergenic | 10.0% |
| !!! | TGAAATTAGTAAAATTTTAT+AGG | + | chr7_4:1463432-1463451 | Msa1134820:intron | 10.0% |
| !! | GGAAAATATATTAAAATAAT+TGG | - | chr7_4:1463464-1463483 | None:intergenic | 10.0% |
| !!! | AATACATTTATTTTGTATTT+GGG | + | chr7_4:1463514-1463533 | Msa1134820:intron | 10.0% |
| !! | AAAAAGATAACAATTATTTA+TGG | + | chr7_4:1463677-1463696 | Msa1134820:intron | 10.0% |
| !!! | AAATAATATTATGATTTTTC+CGG | - | chr7_4:1463798-1463817 | None:intergenic | 10.0% |
| !! | TCAAAATTAAAAGTTGTAAA+AGG | + | chr7_4:1459287-1459306 | Msa1134820:intron | 15.0% |
| !! | CAAAATTAAAAGTTGTAAAA+GGG | + | chr7_4:1459288-1459307 | Msa1134820:intron | 15.0% |
| !! | AAAATTAAAAGTTGTAAAAG+GGG | + | chr7_4:1459289-1459308 | Msa1134820:intron | 15.0% |
| !!! | TGAAATGTGTTTTTTTTAAT+AGG | + | chr7_4:1459326-1459345 | Msa1134820:intron | 15.0% |
| !!! | GAAATGTGTTTTTTTTAATA+GGG | + | chr7_4:1459327-1459346 | Msa1134820:intron | 15.0% |
| !!! | AAATGTGTTTTTTTTAATAG+GGG | + | chr7_4:1459328-1459347 | Msa1134820:intron | 15.0% |
| !! | AGAGTTAATAATAAATGAAA+TGG | + | chr7_4:1460420-1460439 | Msa1134820:intron | 15.0% |
| !!! | TGTTTTCAGTATTTTATTTT+TGG | + | chr7_4:1462400-1462419 | Msa1134820:intron | 15.0% |
| !!! | TTTTTTTTTCCATAAAAGAT+TGG | - | chr7_4:1463322-1463341 | None:intergenic | 15.0% |
| !!! | TCTTTTATGGAAAAAAAAAT+AGG | + | chr7_4:1463323-1463342 | Msa1134820:intron | 15.0% |
| !!! | CTTTTATGGAAAAAAAAATA+GGG | + | chr7_4:1463324-1463343 | Msa1134820:intron | 15.0% |
| !!! | GAATACATTTATTTTGTATT+TGG | + | chr7_4:1463513-1463532 | Msa1134820:intron | 15.0% |
| !!! | ATACATTTATTTTGTATTTG+GGG | + | chr7_4:1463515-1463534 | Msa1134820:intron | 15.0% |
| !!! | TATACGAATTTTTTTTTTGA+AGG | + | chr7_4:1463562-1463581 | Msa1134820:intron | 15.0% |
| !!! | TTTTATTTCTCTCTTTTTTT+CGG | - | chr7_4:1463633-1463652 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTATTTTGAC+CGG | + | chr7_4:1463734-1463753 | Msa1134820:intron | 15.0% |
| !! | TTGAACAAAATTCAATGATT+GGG | - | chr7_4:1458710-1458729 | None:intergenic | 20.0% |
| !! | TTTGAACAAAATTCAATGAT+TGG | - | chr7_4:1458711-1458730 | None:intergenic | 20.0% |
| !! | CAATGGATAATCATAATTAT+TGG | + | chr7_4:1458781-1458800 | Msa1134820:intron | 20.0% |
| !! | GATAAAATTCAAGTCTATAA+GGG | - | chr7_4:1458877-1458896 | None:intergenic | 20.0% |
| !! | AGATAAAATTCAAGTCTATA+AGG | - | chr7_4:1458878-1458897 | None:intergenic | 20.0% |
| !!! | TTATTTTGATGTATAACCTA+AGG | + | chr7_4:1459037-1459056 | Msa1134820:intron | 20.0% |
| !! | AAAAGACAATAACACAAATA+AGG | + | chr7_4:1459060-1459079 | Msa1134820:intron | 20.0% |
| !! | AAAATTGAAAGTTGCAAAAA+GGG | - | chr7_4:1459157-1459176 | None:intergenic | 20.0% |
| !!! | AATGTGTTTTTTTTAATAGG+GGG | + | chr7_4:1459329-1459348 | Msa1134820:intron | 20.0% |
| !! | ATATAGTGATGTATGATATA+TGG | + | chr7_4:1459494-1459513 | Msa1134820:intron | 20.0% |
| !! | TTACGAAGAAAAAAATTTCT+CGG | + | chr7_4:1459989-1460008 | Msa1134820:intron | 20.0% |
| !!! | CTTGAAATTTTAACTAACAA+AGG | + | chr7_4:1460500-1460519 | Msa1134820:intron | 20.0% |
| !! | TTTCTTTAATATCATACTGT+TGG | - | chr7_4:1460528-1460547 | None:intergenic | 20.0% |
| !! | AAGGAAGTTATATATAGAAT+AGG | - | chr7_4:1461011-1461030 | None:intergenic | 20.0% |
| !! | ACTTAAAATGTTATTCATGA+AGG | - | chr7_4:1461030-1461049 | None:intergenic | 20.0% |
| !! | TTTACAAAGAGATACAAAAA+AGG | + | chr7_4:1461618-1461637 | Msa1134820:intron | 20.0% |
| !! | TTACAAAGAGATACAAAAAA+GGG | + | chr7_4:1461619-1461638 | Msa1134820:intron | 20.0% |
| !!! | GTATAAATTAGGTTTTTTCT+TGG | - | chr7_4:1461673-1461692 | None:intergenic | 20.0% |
| !!! | GAATAATTTTAGGAAATCAA+AGG | - | chr7_4:1461811-1461830 | None:intergenic | 20.0% |
| !!! | TTCCTAAAATTATTCTCTTT+TGG | + | chr7_4:1461816-1461835 | Msa1134820:intron | 20.0% |
| !!! | AACCAAAAGAGAATAATTTT+AGG | - | chr7_4:1461821-1461840 | None:intergenic | 20.0% |
| !! | TTTCTTTGAATTTCATTCAA+TGG | + | chr7_4:1462195-1462214 | Msa1134820:intron | 20.0% |
| !! | TTCTTTGAATTTCATTCAAT+GGG | + | chr7_4:1462196-1462215 | Msa1134820:intron | 20.0% |
| !!! | AACTTATTTCTTTTCAATCT+AGG | + | chr7_4:1462560-1462579 | Msa1134820:intron | 20.0% |
| !! | TTGCAATAAATTATCAACAT+AGG | + | chr7_4:1462731-1462750 | Msa1134820:intron | 20.0% |
| !! | TGCAATAAATTATCAACATA+GGG | + | chr7_4:1462732-1462751 | Msa1134820:intron | 20.0% |
| !! | AAAGAATCAACAATATTCAA+CGG | - | chr7_4:1462915-1462934 | None:intergenic | 20.0% |
| !!! | ATATTAAGCTTATTTCCTTT+TGG | + | chr7_4:1463084-1463103 | Msa1134820:intron | 20.0% |
| !!! | GAACTTTTGTTGTAATTATT+CGG | + | chr7_4:1463198-1463217 | Msa1134820:intron | 20.0% |
| !!! | ATAGGGCTTAAATAAATTTT+TGG | + | chr7_4:1463341-1463360 | Msa1134820:intron | 20.0% |
| !!! | CATTAGTTTTAAAAGAGTTT+TGG | - | chr7_4:1463494-1463513 | None:intergenic | 20.0% |
| !!! | TTTATTTCTCTCTTTTTTTC+GGG | - | chr7_4:1463632-1463651 | None:intergenic | 20.0% |
| !! | GAAAAAAAGAGAGAAATAAA+AGG | + | chr7_4:1463632-1463651 | Msa1134820:intron | 20.0% |
| !! | AAAATTTATTGTATGTTTCC+TGG | + | chr7_4:1463847-1463866 | Msa1134820:intron | 20.0% |
| !!! | TTTTTTTTGACAAAAGAAGA+GGG | - | chr7_4:1463986-1464005 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGACAAAAGAAG+AGG | - | chr7_4:1463987-1464006 | None:intergenic | 20.0% |
| !! | TATACATCAAAAAAATCTCA+CGG | + | chr7_4:1464097-1464116 | Msa1134820:CDS | 20.0% |
| !!! | TTATCCATTGTGATTGATTT+TGG | - | chr7_4:1458771-1458790 | None:intergenic | 25.0% |
| !! | TTGCAACTAGTTTAAAGTTA+GGG | - | chr7_4:1459105-1459124 | None:intergenic | 25.0% |
| !! | ATTGCAACTAGTTTAAAGTT+AGG | - | chr7_4:1459106-1459125 | None:intergenic | 25.0% |
| !!! | GGAAACTTTTTTTTAATAGG+GGG | - | chr7_4:1459134-1459153 | None:intergenic | 25.0% |
| !!! | GGGAAACTTTTTTTTAATAG+GGG | - | chr7_4:1459135-1459154 | None:intergenic | 25.0% |
| !!! | GGGGAAACTTTTTTTTAATA+GGG | - | chr7_4:1459136-1459155 | None:intergenic | 25.0% |
| ! | AAATTGAAAGTTGCAAAAAG+GGG | - | chr7_4:1459156-1459175 | None:intergenic | 25.0% |
| ! | CAAAATTGAAAGTTGCAAAA+AGG | - | chr7_4:1459158-1459177 | None:intergenic | 25.0% |
| ! | TAAAAATCAACCATTCAAGA+TGG | - | chr7_4:1459263-1459282 | None:intergenic | 25.0% |
| ! | ATTGCAACTAATACAAAGTT+AGG | + | chr7_4:1459357-1459376 | Msa1134820:intron | 25.0% |
| ! | TTGCAACTAATACAAAGTTA+GGG | + | chr7_4:1459358-1459377 | Msa1134820:intron | 25.0% |
| !!! | ATTTTGAACTAGTATCGAAA+TGG | + | chr7_4:1459403-1459422 | Msa1134820:intron | 25.0% |
| ! | TCTTATACATGTTGTCAATA+AGG | + | chr7_4:1459431-1459450 | Msa1134820:intron | 25.0% |
| ! | GGTTAAAAAAACGCATATTT+CGG | - | chr7_4:1459856-1459875 | None:intergenic | 25.0% |
| ! | ATAGAACATCCAAAATATCA+AGG | + | chr7_4:1460017-1460036 | Msa1134820:intron | 25.0% |
| ! | AAGTAAGAAGAACTTAATTG+TGG | - | chr7_4:1460055-1460074 | None:intergenic | 25.0% |
| !! | GAACAATTTTTCTCTGTTTT+TGG | + | chr7_4:1460359-1460378 | Msa1134820:intron | 25.0% |
| !!! | ATATGTTGTTTTCCTTGTAA+TGG | + | chr7_4:1460471-1460490 | Msa1134820:intron | 25.0% |
| ! | GAAAATGAGAAAGAATTATC+TGG | - | chr7_4:1460565-1460584 | None:intergenic | 25.0% |
| ! | GTATTGAATGTGCATTATTT+AGG | - | chr7_4:1460589-1460608 | None:intergenic | 25.0% |
| ! | ATAAATGAAAATCATGCAGA+AGG | - | chr7_4:1460730-1460749 | None:intergenic | 25.0% |
| !! | GTATTTTGTCCATTCATAAA+AGG | - | chr7_4:1460819-1460838 | None:intergenic | 25.0% |
| !!! | TCAAGTCAAAGTTTTATCTA+AGG | - | chr7_4:1461071-1461090 | None:intergenic | 25.0% |
| !! | GAATAGTAAAATCAGGTTTT+TGG | - | chr7_4:1461179-1461198 | None:intergenic | 25.0% |
| ! | AATCAATTCTGTTGTGAATT+CGG | + | chr7_4:1461349-1461368 | Msa1134820:intron | 25.0% |
| ! | ACCAATGAAATTTAGATTCA+TGG | + | chr7_4:1461388-1461407 | Msa1134820:intron | 25.0% |
| ! | TCCATGAATCTAAATTTCAT+TGG | - | chr7_4:1461392-1461411 | None:intergenic | 25.0% |
| !! | TCTTTATCTTGTTTCTTCTT+TGG | - | chr7_4:1461515-1461534 | None:intergenic | 25.0% |
| ! | AAATAACTGTTTACCTAGTT+CGG | + | chr7_4:1461558-1461577 | Msa1134820:intron | 25.0% |
| !! | TTGGGAAAAAGGTATAAATT+AGG | - | chr7_4:1461684-1461703 | None:intergenic | 25.0% |
| !! | TCTAGAGTTGAAAAACAATT+GGG | - | chr7_4:1461757-1461776 | None:intergenic | 25.0% |
| !!! | TTCTAGAGTTGAAAAACAAT+TGG | - | chr7_4:1461758-1461777 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAATCAAAGGATA+TGG | - | chr7_4:1461805-1461824 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTTCGACAAAAAT+CGG | - | chr7_4:1461958-1461977 | None:intergenic | 25.0% |
| ! | ATTTGAAGATACAATGTGAA+GGG | - | chr7_4:1461988-1462007 | None:intergenic | 25.0% |
| ! | TATTTGAAGATACAATGTGA+AGG | - | chr7_4:1461989-1462008 | None:intergenic | 25.0% |
| !!! | AATGGAAATAGTTTTGATGT+TGG | + | chr7_4:1462143-1462162 | Msa1134820:intron | 25.0% |
| !!! | TATTTTATTTTTGGCCCATT+AGG | + | chr7_4:1462409-1462428 | Msa1134820:intron | 25.0% |
| !!! | ATTTTATTTTTGGCCCATTA+GGG | + | chr7_4:1462410-1462429 | Msa1134820:intron | 25.0% |
| !! | GCAACTATTAAGCTTTAATA+GGG | - | chr7_4:1462447-1462466 | None:intergenic | 25.0% |
| !! | TGCAACTATTAAGCTTTAAT+AGG | - | chr7_4:1462448-1462467 | None:intergenic | 25.0% |
| ! | TATTAAAGCTTAATAGTTGC+AGG | + | chr7_4:1462447-1462466 | Msa1134820:intron | 25.0% |
| ! | ATTAAAGCTTAATAGTTGCA+GGG | + | chr7_4:1462448-1462467 | Msa1134820:intron | 25.0% |
| !! | TATAGAGTTTTCTCAATTTC+TGG | + | chr7_4:1462497-1462516 | Msa1134820:intron | 25.0% |
| ! | GCAATAAATTATCAACATAG+GGG | + | chr7_4:1462733-1462752 | Msa1134820:intron | 25.0% |
| !!! | ACAACCCAACATTTATTTTT+AGG | + | chr7_4:1462825-1462844 | Msa1134820:intron | 25.0% |
| ! | GCAACCTAAAAATAAATGTT+GGG | - | chr7_4:1462832-1462851 | None:intergenic | 25.0% |
| ! | TGCAACCTAAAAATAAATGT+TGG | - | chr7_4:1462833-1462852 | None:intergenic | 25.0% |
| !!! | GTTGATTCTTTTTTACAGTT+TGG | + | chr7_4:1462924-1462943 | Msa1134820:intron | 25.0% |
| !! | AAATGCTCATATTCAGATTT+TGG | + | chr7_4:1463058-1463077 | Msa1134820:intron | 25.0% |
| !!! | GTTTTAAAAGAGTTTTGGAT+CGG | - | chr7_4:1463489-1463508 | None:intergenic | 25.0% |
| !!! | TTATTTTGTATTTGGGGTTT+AGG | + | chr7_4:1463521-1463540 | Msa1134820:intron | 25.0% |
| !!! | TATTTTGTATTTGGGGTTTA+GGG | + | chr7_4:1463522-1463541 | Msa1134820:intron | 25.0% |
| !!! | TGTTTTTCTAGAAAGTAGTT+AGG | - | chr7_4:1463711-1463730 | None:intergenic | 25.0% |
| !!! | TTACGTTTTTCTAGAAAGTA+CGG | - | chr7_4:1463756-1463775 | None:intergenic | 25.0% |
| ! | AATCGAAATAACTAAGAAGA+GGG | - | chr7_4:1464016-1464035 | None:intergenic | 25.0% |
| ! | AAGAAGGTTATGTTCATAAT+GGG | + | chr7_4:1464149-1464168 | Msa1134820:CDS | 25.0% |
| !! | ACTATACTTTTCATCTACTT+AGG | + | chr7_4:1464191-1464210 | Msa1134820:CDS | 25.0% |
| !! | TTGAATTGATGATTTCATAG+AGG | - | chr7_4:1464226-1464245 | None:intergenic | 25.0% |
| GTTTCCAAAATCAATCACAA+TGG | + | chr7_4:1458764-1458783 | Msa1134820:intron | 30.0% | |
| TCAATTCCACATCACATATT+AGG | - | chr7_4:1458812-1458831 | None:intergenic | 30.0% | |
| TTCATACTTTGATACCTTGT+TGG | + | chr7_4:1458838-1458857 | Msa1134820:intron | 30.0% | |
| GAATCAAGTACATAAGTAGA+TGG | + | chr7_4:1458918-1458937 | Msa1134820:intron | 30.0% | |
| ATAACGAAAGCAATTGGAAT+TGG | - | chr7_4:1458958-1458977 | None:intergenic | 30.0% | |
| TTGTTCATAACGAAAGCAAT+TGG | - | chr7_4:1458964-1458983 | None:intergenic | 30.0% | |
| ! | GAACAAAACCTTGTTCTTTT+CGG | + | chr7_4:1458978-1458997 | Msa1134820:intron | 30.0% |
| !! | TGTGTTATTGTCTTTTCCTT+AGG | - | chr7_4:1459056-1459075 | None:intergenic | 30.0% |
| ! | TGCAACTAGTTTAAAGTTAG+GGG | - | chr7_4:1459104-1459123 | None:intergenic | 30.0% |
| CTTTAAACTAGTTGCAATCT+TGG | + | chr7_4:1459108-1459127 | Msa1134820:intron | 30.0% | |
| !!! | GGGGGAAACTTTTTTTTAAT+AGG | - | chr7_4:1459137-1459156 | None:intergenic | 30.0% |
| AATTGAAAGTTGCAAAAAGG+GGG | - | chr7_4:1459155-1459174 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTAGCAAGTTTC+AGG | + | chr7_4:1459221-1459240 | Msa1134820:intron | 30.0% |
| TTGTAAAAGGGGAAAACTTA+AGG | + | chr7_4:1459300-1459319 | Msa1134820:intron | 30.0% | |
| TGTAAAAGGGGAAAACTTAA+GGG | + | chr7_4:1459301-1459320 | Msa1134820:intron | 30.0% | |
| ATGTATGATATATGGAGAGA+GGG | + | chr7_4:1459502-1459521 | Msa1134820:intron | 30.0% | |
| ATTACAAGACCATAACACTA+CGG | - | chr7_4:1459621-1459640 | None:intergenic | 30.0% | |
| CGAATGCATGTTTATATCAA+AGG | + | chr7_4:1459751-1459770 | Msa1134820:intron | 30.0% | |
| TAAGAAGAACTTAATTGTGG+AGG | - | chr7_4:1460052-1460071 | None:intergenic | 30.0% | |
| ACTAAAACTTAGTAAACTGG+TGG | - | chr7_4:1460322-1460341 | None:intergenic | 30.0% | |
| GAGAAAAATTGTTCTTCAAG+TGG | - | chr7_4:1460353-1460372 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGATTTTCGCTTT+TGG | + | chr7_4:1460373-1460392 | Msa1134820:intron | 30.0% |
| GGATTTCAAATGCAAATGTA+TGG | + | chr7_4:1460394-1460413 | Msa1134820:intron | 30.0% | |
| ATCTTCGTACGCTAAATTTA+AGG | + | chr7_4:1460692-1460711 | Msa1134820:intron | 30.0% | |
| AGACTGTGAATAGTAAAATC+AGG | - | chr7_4:1461186-1461205 | None:intergenic | 30.0% | |
| AAAAGGTTGAATCATTCTGT+CGG | + | chr7_4:1461269-1461288 | Msa1134820:intron | 30.0% | |
| !! | TTTTTCAATTGATGCCCAAA+AGG | + | chr7_4:1461311-1461330 | Msa1134820:intron | 30.0% |
| ! | CTACAATTTACGTTCCTTTT+GGG | - | chr7_4:1461328-1461347 | None:intergenic | 30.0% |
| ! | ACTACAATTTACGTTCCTTT+TGG | - | chr7_4:1461329-1461348 | None:intergenic | 30.0% |
| AATTTCATTGGTGTGAGATT+TGG | - | chr7_4:1461380-1461399 | None:intergenic | 30.0% | |
| !! | CTTGTGGTTATTTTGCTTAT+TGG | - | chr7_4:1461432-1461451 | None:intergenic | 30.0% |
| GAACTAGGTAAACAGTTATT+TGG | - | chr7_4:1461559-1461578 | None:intergenic | 30.0% | |
| !!! | ATATGGATTGGTTCTCTTTT+GGG | - | chr7_4:1461788-1461807 | None:intergenic | 30.0% |
| !! | AATTTTGGAAAACACATCAG+AGG | - | chr7_4:1461878-1461897 | None:intergenic | 30.0% |
| !!! | TTTTAGTTCGACAAAAATCG+GGG | - | chr7_4:1461956-1461975 | None:intergenic | 30.0% |
| !!! | GTTTTAGTTCGACAAAAATC+GGG | - | chr7_4:1461957-1461976 | None:intergenic | 30.0% |
| TAGGAATTTGTGAGCTATTA+TGG | - | chr7_4:1462030-1462049 | None:intergenic | 30.0% | |
| AAATATAGAGTTATGGCACT+AGG | - | chr7_4:1462049-1462068 | None:intergenic | 30.0% | |
| TGAGGCAAAATATAGAGTTA+TGG | - | chr7_4:1462056-1462075 | None:intergenic | 30.0% | |
| !!! | TCGAGTTTTGTGTTTTGATT+AGG | - | chr7_4:1462112-1462131 | None:intergenic | 30.0% |
| ATCAAAACACAAAACTCGAA+TGG | + | chr7_4:1462113-1462132 | Msa1134820:intron | 30.0% | |
| TCAAAACACAAAACTCGAAT+GGG | + | chr7_4:1462114-1462133 | Msa1134820:intron | 30.0% | |
| GGAAATAACAAAACCCTAAT+GGG | - | chr7_4:1462426-1462445 | None:intergenic | 30.0% | |
| !! | AACTTGTTAAAATAGGGTTC+CGG | - | chr7_4:1462529-1462548 | None:intergenic | 30.0% |
| !! | GCGACAAACTTGTTAAAATA+GGG | - | chr7_4:1462535-1462554 | None:intergenic | 30.0% |
| !! | AGCGACAAACTTGTTAAAAT+AGG | - | chr7_4:1462536-1462555 | None:intergenic | 30.0% |
| TTTATCCACAATAAGTCTGA+TGG | - | chr7_4:1462669-1462688 | None:intergenic | 30.0% | |
| ATCAGACTTATTGTGGATAA+AGG | + | chr7_4:1462668-1462687 | Msa1134820:intron | 30.0% | |
| ACACATAATTGAGACTCATT+AGG | - | chr7_4:1462783-1462802 | None:intergenic | 30.0% | |
| ATCAACAATATTCAACGGAT+TGG | - | chr7_4:1462910-1462929 | None:intergenic | 30.0% | |
| ! | TTACAGTTTGGTAGCTTATT+AGG | + | chr7_4:1462936-1462955 | Msa1134820:intron | 30.0% |
| TAGGTTATGTTAAATCACGT+CGG | + | chr7_4:1462955-1462974 | Msa1134820:intron | 30.0% | |
| GGTCATTTATGTTCTTCAAT+TGG | + | chr7_4:1462976-1462995 | Msa1134820:intron | 30.0% | |
| ! | TTAAGCTTATTTCCTTTTGG+TGG | + | chr7_4:1463087-1463106 | Msa1134820:intron | 30.0% |
| !! | TTTAGCTTTAAACCACCAAA+AGG | - | chr7_4:1463102-1463121 | None:intergenic | 30.0% |
| TTCTGTATCAGTTTCATGTT+TGG | + | chr7_4:1463132-1463151 | Msa1134820:intron | 30.0% | |
| ! | AATTATTCGGTTTTCTTCCT+TGG | + | chr7_4:1463211-1463230 | Msa1134820:intron | 30.0% |
| ! | TTTCCATAAAAGATTGGCTA+AGG | - | chr7_4:1463316-1463335 | None:intergenic | 30.0% |
| ! | CTCTCTTAAATTTTCCTTAG+CGG | - | chr7_4:1463404-1463423 | None:intergenic | 30.0% |
| TCGGGTGAAAAATATGTTAT+TGG | - | chr7_4:1463614-1463633 | None:intergenic | 30.0% | |
| ! | AAGAGGTATATATAGCACAA+TGG | + | chr7_4:1463871-1463890 | Msa1134820:intron | 30.0% |
| CAATCGAAATAACTAAGAAG+AGG | - | chr7_4:1464017-1464036 | None:intergenic | 30.0% | |
| GAAGAAGGTTATGTTCATAA+TGG | + | chr7_4:1464148-1464167 | Msa1134820:CDS | 30.0% | |
| ! | TTTGATACCTTGTTGGTGAA+AGG | + | chr7_4:1458845-1458864 | Msa1134820:intron | 35.0% |
| ! | GCAACTAGTTTAAAGTTAGG+GGG | - | chr7_4:1459103-1459122 | None:intergenic | 35.0% |
| ! | TTTTACTGTCCTGAATGGTT+GGG | - | chr7_4:1459191-1459210 | None:intergenic | 35.0% |
| ! | TTTTTACTGTCCTGAATGGT+TGG | - | chr7_4:1459192-1459211 | None:intergenic | 35.0% |
| !!! | CTTGTTTTTACTGTCCTGAA+TGG | - | chr7_4:1459196-1459215 | None:intergenic | 35.0% |
| TTCAGGACAGTAAAAACAAG+CGG | + | chr7_4:1459196-1459215 | Msa1134820:intron | 35.0% | |
| CAACTAATACAAAGTTAGGG+AGG | + | chr7_4:1459361-1459380 | Msa1134820:intron | 35.0% | |
| GATGTATGATATATGGAGAG+AGG | + | chr7_4:1459501-1459520 | Msa1134820:intron | 35.0% | |
| !! | GAGTTTGGAATCAATTTTGC+AGG | + | chr7_4:1459539-1459558 | Msa1134820:intron | 35.0% |
| !! | TTTGGAATCAATTTTGCAGG+AGG | + | chr7_4:1459542-1459561 | Msa1134820:intron | 35.0% |
| TTACAAGACCATAACACTAC+GGG | - | chr7_4:1459620-1459639 | None:intergenic | 35.0% | |
| ! | TTAACCACAATTTGCCCTTT+TGG | + | chr7_4:1459870-1459889 | Msa1134820:intron | 35.0% |
| ! | TAACCACAATTTGCCCTTTT+GGG | + | chr7_4:1459871-1459890 | Msa1134820:intron | 35.0% |
| ! | GAATGTTGATTGTGAAGTGA+TGG | + | chr7_4:1459916-1459935 | Msa1134820:intron | 35.0% |
| ! | TACGGTTGTCCTTGATATTT+TGG | - | chr7_4:1460029-1460048 | None:intergenic | 35.0% |
| AGAACTTAATTGTGGAGGTA+CGG | - | chr7_4:1460047-1460066 | None:intergenic | 35.0% | |
| TTTCTGCAAGTTATCAAAGG+TGG | - | chr7_4:1460086-1460105 | None:intergenic | 35.0% | |
| ! | ACCTTTGATAACTTGCAGAA+AGG | + | chr7_4:1460085-1460104 | Msa1134820:intron | 35.0% |
| TCCTTTCTGCAAGTTATCAA+AGG | - | chr7_4:1460089-1460108 | None:intergenic | 35.0% | |
| !! | TGATGTTTCTCAAGTGTTGA+AGG | + | chr7_4:1460195-1460214 | Msa1134820:CDS | 35.0% |
| GGGACTAAAACTTAGTAAAC+TGG | - | chr7_4:1460325-1460344 | None:intergenic | 35.0% | |
| ! | TTCAAGTTCAAGCCATTACA+AGG | - | chr7_4:1460486-1460505 | None:intergenic | 35.0% |
| ATGCAATAAAGCGTGTAACT+TGG | - | chr7_4:1460787-1460806 | None:intergenic | 35.0% | |
| CCATTCATAAAAGGTCGAAT+TGG | - | chr7_4:1460810-1460829 | None:intergenic | 35.0% | |
| ! | CCAATTCGACCTTTTATGAA+TGG | + | chr7_4:1460807-1460826 | Msa1134820:intron | 35.0% |
| AAATTGACCGTCACAATTGT+AGG | + | chr7_4:1460843-1460862 | Msa1134820:intron | 35.0% | |
| AATTGACCGTCACAATTGTA+GGG | + | chr7_4:1460844-1460863 | Msa1134820:intron | 35.0% | |
| ! | CTTTTTCCCTACAATTGTGA+CGG | - | chr7_4:1460853-1460872 | None:intergenic | 35.0% |
| GTAAGATCATGCAACAACTT+TGG | - | chr7_4:1460882-1460901 | None:intergenic | 35.0% | |
| ATATCTACCAACAGATGAAG+AGG | - | chr7_4:1460949-1460968 | None:intergenic | 35.0% | |
| TTCCAAGCTTGCAAGTAAAA+AGG | + | chr7_4:1461252-1461271 | Msa1134820:intron | 35.0% | |
| ! | AACCTTTTTACTTGCAAGCT+TGG | - | chr7_4:1461257-1461276 | None:intergenic | 35.0% |
| ! | AGAATTGTTGTTGTTGCTTG+TGG | - | chr7_4:1461448-1461467 | None:intergenic | 35.0% |
| !! | TTGTGGTTTTGCTTTACACT+TGG | - | chr7_4:1461487-1461506 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTGGTTCGATTG+TGG | - | chr7_4:1461504-1461523 | None:intergenic | 35.0% |
| GTCTATCATTGACCTACTTT+GGG | + | chr7_4:1461580-1461599 | Msa1134820:intron | 35.0% | |
| TCTATCATTGACCTACTTTG+GGG | + | chr7_4:1461581-1461600 | Msa1134820:intron | 35.0% | |
| ATGGAATGAGATTGGGAAAA+AGG | - | chr7_4:1461695-1461714 | None:intergenic | 35.0% | |
| CTTGTTCATGGAATGAGATT+GGG | - | chr7_4:1461702-1461721 | None:intergenic | 35.0% | |
| ACTTGTTCATGGAATGAGAT+TGG | - | chr7_4:1461703-1461722 | None:intergenic | 35.0% | |
| ATCATTGAGTCACTTGTTCA+TGG | - | chr7_4:1461714-1461733 | None:intergenic | 35.0% | |
| TCAATGATTTCACTCACCAA+AGG | + | chr7_4:1461726-1461745 | Msa1134820:intron | 35.0% | |
| !!! | TATGGATTGGTTCTCTTTTG+GGG | - | chr7_4:1461787-1461806 | None:intergenic | 35.0% |
| !!! | GATATGGATTGGTTCTCTTT+TGG | - | chr7_4:1461789-1461808 | None:intergenic | 35.0% |
| GGAAATCAAAGGATATGGAT+TGG | - | chr7_4:1461800-1461819 | None:intergenic | 35.0% | |
| GTGTACGAATTGGAAAATCT+GGG | - | chr7_4:1461904-1461923 | None:intergenic | 35.0% | |
| TGTGTACGAATTGGAAAATC+TGG | - | chr7_4:1461905-1461924 | None:intergenic | 35.0% | |
| AACAGTTCATACTGCTAGTT+TGG | + | chr7_4:1462166-1462185 | Msa1134820:intron | 35.0% | |
| AATTTCATTCAATGGGATCC+AGG | + | chr7_4:1462203-1462222 | Msa1134820:intron | 35.0% | |
| GGGAAATAACAAAACCCTAA+TGG | - | chr7_4:1462427-1462446 | None:intergenic | 35.0% | |
| !! | TCTCAATTTCTGGTGTATTC+CGG | + | chr7_4:1462507-1462526 | Msa1134820:intron | 35.0% |
| TCTGATGGAATGAAATTGTG+GGG | - | chr7_4:1462654-1462673 | None:intergenic | 35.0% | |
| GTCTGATGGAATGAAATTGT+GGG | - | chr7_4:1462655-1462674 | None:intergenic | 35.0% | |
| AGTCTGATGGAATGAAATTG+TGG | - | chr7_4:1462656-1462675 | None:intergenic | 35.0% | |
| TCATTCCATCAGACTTATTG+TGG | + | chr7_4:1462661-1462680 | Msa1134820:intron | 35.0% | |
| TAGGGGAATTTATTTCGTCA+CGG | + | chr7_4:1462750-1462769 | Msa1134820:intron | 35.0% | |
| GAGTCTCAATTATGTGTTAG+TGG | + | chr7_4:1462786-1462805 | Msa1134820:intron | 35.0% | |
| CAATTATGTGTTAGTGGTTG+CGG | + | chr7_4:1462792-1462811 | Msa1134820:intron | 35.0% | |
| !!! | TTTTTAGGTTGCAGCTTGTT+TGG | + | chr7_4:1462840-1462859 | Msa1134820:intron | 35.0% |
| TTTGGCAACTTCTTCGAAAT+TGG | + | chr7_4:1462868-1462887 | Msa1134820:intron | 35.0% | |
| !! | AAATTGGCTTGGAGTTCATT+CGG | + | chr7_4:1462884-1462903 | Msa1134820:intron | 35.0% |
| CTATGAACTGACTATCTTTC+CGG | - | chr7_4:1463248-1463267 | None:intergenic | 35.0% | |
| ! | TGTCCTTAGCCAATCTTTTA+TGG | + | chr7_4:1463310-1463329 | Msa1134820:intron | 35.0% |
| !!! | TCCTCTAAAATTTTCCGCTA+AGG | + | chr7_4:1463387-1463406 | Msa1134820:intron | 35.0% |
| ! | TCCTTAGCGGAAAATTTTAG+AGG | - | chr7_4:1463391-1463410 | None:intergenic | 35.0% |
| !!! | TAAAAGAGTTTTGGATCGGT+TGG | - | chr7_4:1463485-1463504 | None:intergenic | 35.0% |
| ATTGTATGTTTCCTGGAAAG+AGG | + | chr7_4:1463854-1463873 | Msa1134820:intron | 35.0% | |
| TGCTATATATACCTCTTTCC+AGG | - | chr7_4:1463868-1463887 | None:intergenic | 35.0% | |
| AGGTATATATAGCACAATGG+AGG | + | chr7_4:1463874-1463893 | Msa1134820:intron | 35.0% | |
| !! | ATAATGGGTGCAACATACAT+CGG | + | chr7_4:1464164-1464183 | Msa1134820:CDS | 35.0% |
| !! | CTGAGTTGATGATTTCAGAG+AGG | + | chr7_4:1458896-1458915 | Msa1134820:intron | 40.0% |
| TATGCTAGCCGAAAAGAACA+AGG | - | chr7_4:1458989-1459008 | None:intergenic | 40.0% | |
| ! | TCTTTTCGGCTAGCATATTG+AGG | + | chr7_4:1458992-1459011 | Msa1134820:intron | 40.0% |
| TCATTCAAACCCAACCATTC+AGG | + | chr7_4:1459179-1459198 | Msa1134820:intron | 40.0% | |
| TCAGGACAGTAAAAACAAGC+GGG | + | chr7_4:1459197-1459216 | Msa1134820:intron | 40.0% | |
| TGACCTTCTACCATCTTGAA+TGG | + | chr7_4:1459250-1459269 | Msa1134820:intron | 40.0% | |
| CAACCATTCAAGATGGTAGA+AGG | - | chr7_4:1459256-1459275 | None:intergenic | 40.0% | |
| ! | TCAATTTTGCAGGAGGTTCA+TGG | + | chr7_4:1459549-1459568 | Msa1134820:intron | 40.0% |
| ! | AACCACAATTTGCCCTTTTG+GGG | + | chr7_4:1459872-1459891 | Msa1134820:intron | 40.0% |
| ! | AATTCACCAGGGTACTATGA+CGG | + | chr7_4:1460130-1460149 | Msa1134820:CDS | 40.0% |
| ATGTGGAAGTTGCCTTTGTT+TGG | + | chr7_4:1460166-1460185 | Msa1134820:CDS | 40.0% | |
| ACATCAGTTGCTCCAAACAA+AGG | - | chr7_4:1460181-1460200 | None:intergenic | 40.0% | |
| CATAGTCGAATCCGATGATA+CGG | - | chr7_4:1460261-1460280 | None:intergenic | 40.0% | |
| TTGTTCTTCAAGTGGAAGCA+GGG | - | chr7_4:1460345-1460364 | None:intergenic | 40.0% | |
| ATTGTTCTTCAAGTGGAAGC+AGG | - | chr7_4:1460346-1460365 | None:intergenic | 40.0% | |
| !!! | GAGACTGCAGATTGCTTTTT+TGG | - | chr7_4:1460666-1460685 | None:intergenic | 40.0% |
| CATGCAGAAGGTAAAAGCTA+CGG | - | chr7_4:1460718-1460737 | None:intergenic | 40.0% | |
| CACAAAACCTCTTCATCTGT+TGG | + | chr7_4:1460939-1460958 | Msa1134820:intron | 40.0% | |
| GGTAGATATTCCCGTTTGTT+CGG | + | chr7_4:1460960-1460979 | Msa1134820:intron | 40.0% | |
| TGTTTGCAAAGCCGAACAAA+CGG | - | chr7_4:1460974-1460993 | None:intergenic | 40.0% | |
| CAATGTAAGACACTCTGCAT+TGG | + | chr7_4:1461092-1461111 | Msa1134820:intron | 40.0% | |
| ATCCATTCAACAGCTTGAGA+AGG | - | chr7_4:1461224-1461243 | None:intergenic | 40.0% | |
| GGTCTATCATTGACCTACTT+TGG | + | chr7_4:1461579-1461598 | Msa1134820:intron | 40.0% | |
| !! | AAACAATTGGGAAGCACCTT+TGG | - | chr7_4:1461745-1461764 | None:intergenic | 40.0% |
| !!! | ATGGATTGGTTCTCTTTTGG+GGG | - | chr7_4:1461786-1461805 | None:intergenic | 40.0% |
| ! | GGAAAATCTGGGCACAATTT+TGG | - | chr7_4:1461893-1461912 | None:intergenic | 40.0% |
| CACTTGTACTGTGTACGAAT+TGG | - | chr7_4:1461914-1461933 | None:intergenic | 40.0% | |
| ! | CAAAAATCGGGGTACGATTT+TGG | - | chr7_4:1461945-1461964 | None:intergenic | 40.0% |
| GATACAATGTGAAGGGCAAT+TGG | - | chr7_4:1461981-1462000 | None:intergenic | 40.0% | |
| ! | TTTTGATCCTTGGTGAACTC+TGG | - | chr7_4:1462081-1462100 | None:intergenic | 40.0% |
| GTTCACCAAGGATCAAAATG+TGG | + | chr7_4:1462083-1462102 | Msa1134820:intron | 40.0% | |
| AACTCGAATGGGATGAGAAA+TGG | + | chr7_4:1462125-1462144 | Msa1134820:intron | 40.0% | |
| TTGGAGGAGTCAACAAACAT+AGG | + | chr7_4:1462244-1462263 | Msa1134820:intron | 40.0% | |
| TCCTTATCAGAACGAGAACT+TGG | + | chr7_4:1462274-1462293 | Msa1134820:intron | 40.0% | |
| ACCAAGTTCTCGTTCTGATA+AGG | - | chr7_4:1462278-1462297 | None:intergenic | 40.0% | |
| TGGAAGAGAATGATGTAGGA+GGG | + | chr7_4:1462313-1462332 | Msa1134820:intron | 40.0% | |
| AGTGCATATCGTATTCTGAC+TGG | + | chr7_4:1462618-1462637 | Msa1134820:intron | 40.0% | |
| AGGGGAATTTATTTCGTCAC+GGG | + | chr7_4:1462751-1462770 | Msa1134820:intron | 40.0% | |
| !! | GCAGCTTGTTTGGTTCTATT+TGG | + | chr7_4:1462850-1462869 | Msa1134820:intron | 40.0% |
| CAACTTCTTCGAAATTGGCT+TGG | + | chr7_4:1462873-1462892 | Msa1134820:intron | 40.0% | |
| !! | TTGGTTTGCGACTTCTTGAT+CGG | + | chr7_4:1462995-1463014 | Msa1134820:intron | 40.0% |
| TTTGGAAGGAAAGAAACGTC+AGG | + | chr7_4:1463018-1463037 | Msa1134820:intron | 40.0% | |
| ! | AGAAACGTCAGGATTTTCGA+TGG | + | chr7_4:1463029-1463048 | Msa1134820:intron | 40.0% |
| AGTCAATGCCCAAGAGAAAA+GGG | - | chr7_4:1463166-1463185 | None:intergenic | 40.0% | |
| GTGACGCCTAATATGTGATG+TGG | + | chr7_4:1458803-1458822 | Msa1134820:intron | 45.0% | |
| GTCTTGACCTTTCACCAACA+AGG | - | chr7_4:1458855-1458874 | None:intergenic | 45.0% | |
| CAGGACAGTAAAAACAAGCG+GGG | + | chr7_4:1459198-1459217 | Msa1134820:intron | 45.0% | |
| TGATATATGGAGAGAGGGAC+CGG | + | chr7_4:1459507-1459526 | Msa1134820:intron | 45.0% | |
| TTCCAAACTCGCCTATTCAC+CGG | - | chr7_4:1459529-1459548 | None:intergenic | 45.0% | |
| ! | ATTTTGCAGGAGGTTCATGG+AGG | + | chr7_4:1459552-1459571 | Msa1134820:intron | 45.0% |
| ! | TTTTGCAGGAGGTTCATGGA+GGG | + | chr7_4:1459553-1459572 | Msa1134820:intron | 45.0% |
| AGGACTATCCCGTAGTGTTA+TGG | + | chr7_4:1459609-1459628 | Msa1134820:intron | 45.0% | |
| ATGCAGCAAACACCCCAAAA+GGG | - | chr7_4:1459887-1459906 | None:intergenic | 45.0% | |
| AATGCAGCAAACACCCCAAA+AGG | - | chr7_4:1459888-1459907 | None:intergenic | 45.0% | |
| CTGGTGAATTGTGGTTCTCA+CGG | - | chr7_4:1460120-1460139 | None:intergenic | 45.0% | |
| GTGAGAACCACAATTCACCA+GGG | + | chr7_4:1460119-1460138 | Msa1134820:CDS | 45.0% | |
| CATAGTACCCTGGTGAATTG+TGG | - | chr7_4:1460129-1460148 | None:intergenic | 45.0% | |
| !! | TGATACGGACAAAGGCATCA+GGG | - | chr7_4:1460246-1460265 | None:intergenic | 45.0% |
| !! | ATGATACGGACAAAGGCATC+AGG | - | chr7_4:1460247-1460266 | None:intergenic | 45.0% |
| GATGCCTTTGTCCGTATCAT+CGG | + | chr7_4:1460247-1460266 | Msa1134820:CDS | 45.0% | |
| GAATCCGATGATACGGACAA+AGG | - | chr7_4:1460254-1460273 | None:intergenic | 45.0% | |
| TTACTGCCTATTTCCGCAGT+CGG | + | chr7_4:1460898-1460917 | Msa1134820:intron | 45.0% | |
| GTTTGCAAAGCCGAACAAAC+GGG | - | chr7_4:1460973-1460992 | None:intergenic | 45.0% | |
| CTCCTTCTCAAGCTGTTGAA+TGG | + | chr7_4:1461219-1461238 | Msa1134820:intron | 45.0% | |
| GGTCAATGATAGACCGAACT+AGG | - | chr7_4:1461574-1461593 | None:intergenic | 45.0% | |
| ! | GAGAGTTTTGCGAGCAACTT+GGG | - | chr7_4:1461856-1461875 | None:intergenic | 45.0% |
| !! | GGACTCCACATTTTGATCCT+TGG | - | chr7_4:1462091-1462110 | None:intergenic | 45.0% |
| TTCATTCAATGGGATCCAGG+AGG | + | chr7_4:1462206-1462225 | Msa1134820:intron | 45.0% | |
| TCATTCAATGGGATCCAGGA+GGG | + | chr7_4:1462207-1462226 | Msa1134820:intron | 45.0% | |
| AACTTGGTCGAGTTCTTCAG+AGG | + | chr7_4:1462290-1462309 | Msa1134820:intron | 45.0% | |
| GAGGTGGAAGAGAATGATGT+AGG | + | chr7_4:1462309-1462328 | Msa1134820:intron | 45.0% | |
| GTGGAAGAGAATGATGTAGG+AGG | + | chr7_4:1462312-1462331 | Msa1134820:intron | 45.0% | |
| GATAAAGGAGTTCCCGTTGA+AGG | + | chr7_4:1462683-1462702 | Msa1134820:intron | 45.0% | |
| CAAACACTGAGACCTTCAAC+GGG | - | chr7_4:1462698-1462717 | None:intergenic | 45.0% | |
| GCAAACACTGAGACCTTCAA+CGG | - | chr7_4:1462699-1462718 | None:intergenic | 45.0% | |
| TGAAGGTCTCAGTGTTTGCT+TGG | + | chr7_4:1462700-1462719 | Msa1134820:intron | 45.0% | |
| ATGTGTTAGTGGTTGCGGTA+AGG | + | chr7_4:1462797-1462816 | Msa1134820:intron | 45.0% | |
| TTGCGACTTCTTGATCGGTT+TGG | + | chr7_4:1463000-1463019 | Msa1134820:intron | 45.0% | |
| !! | GACTTCTTGATCGGTTTGGA+AGG | + | chr7_4:1463004-1463023 | Msa1134820:intron | 45.0% |
| ! | TGCCAAAGCCCTTTTCTCTT+GGG | + | chr7_4:1463155-1463174 | Msa1134820:intron | 45.0% |
| GAGTCAATGCCCAAGAGAAA+AGG | - | chr7_4:1463167-1463186 | None:intergenic | 45.0% | |
| !! | TCTCTTGGGCATTGACTCTT+TGG | + | chr7_4:1463169-1463188 | Msa1134820:intron | 45.0% |
| GTCGCTAGCTGAAAAGAAGA+AGG | + | chr7_4:1464133-1464152 | Msa1134820:CDS | 45.0% | |
| !! | ACAAATAATTAAATAAAATT+AGG | - | chr7_4:1462374-1462393 | None:intergenic | 5.0% |
| GAGGGCAGGTTTATCGTTGT+AGG | + | chr7_4:1459571-1459590 | Msa1134820:intron | 50.0% | |
| CAGGTTTATCGTTGTAGGCG+TGG | + | chr7_4:1459576-1459595 | Msa1134820:intron | 50.0% | |
| TATCGTTGTAGGCGTGGTAG+AGG | + | chr7_4:1459582-1459601 | Msa1134820:intron | 50.0% | |
| CACCCCAAAAGGGCAAATTG+TGG | - | chr7_4:1459877-1459896 | None:intergenic | 50.0% | |
| CGTGAGAACCACAATTCACC+AGG | + | chr7_4:1460118-1460137 | Msa1134820:CDS | 50.0% | |
| TAACGTCCGTCATAGTACCC+TGG | - | chr7_4:1460139-1460158 | None:intergenic | 50.0% | |
| !! | GGTACTATGACGGACGTTAC+TGG | + | chr7_4:1460140-1460159 | Msa1134820:CDS | 50.0% |
| ACGGACGTTACTGGACAATG+TGG | + | chr7_4:1460149-1460168 | Msa1134820:CDS | 50.0% | |
| ACTTGACCGACTGCGGAAAT+AGG | - | chr7_4:1460907-1460926 | None:intergenic | 50.0% | |
| TATTTCCGCAGTCGGTCAAG+TGG | + | chr7_4:1460906-1460925 | Msa1134820:intron | 50.0% | |
| CTCGATCTCTTCCCCAAAGT+AGG | - | chr7_4:1461595-1461614 | None:intergenic | 50.0% | |
| GAGCAACTTGGGTGAGTCTT+AGG | - | chr7_4:1461845-1461864 | None:intergenic | 50.0% | |
| ! | GGAGAGTTTTGCGAGCAACT+TGG | - | chr7_4:1461857-1461876 | None:intergenic | 50.0% |
| ! | CCTTGGTGAACTCTGGTTTG+AGG | - | chr7_4:1462074-1462093 | None:intergenic | 50.0% |
| CCTCAAACCAGAGTTCACCA+AGG | + | chr7_4:1462071-1462090 | Msa1134820:intron | 50.0% | |
| TTGGTCGAGTTCTTCAGAGG+TGG | + | chr7_4:1462293-1462312 | Msa1134820:intron | 50.0% | |
| ! | ACGATATGCACTGACGCAGT+CGG | - | chr7_4:1462610-1462629 | None:intergenic | 50.0% |
| TGTTAGTGGTTGCGGTAAGG+AGG | + | chr7_4:1462800-1462819 | Msa1134820:intron | 50.0% | |
| ! | GTGCCAAAGCCCTTTTCTCT+TGG | + | chr7_4:1463154-1463173 | Msa1134820:intron | 50.0% |
| TGCCCAAGAGAAAAGGGCTT+TGG | - | chr7_4:1463160-1463179 | None:intergenic | 50.0% | |
| TTCCTTGGTACACCTTGAGC+CGG | + | chr7_4:1463226-1463245 | Msa1134820:intron | 50.0% | |
| CTGACTATCTTTCCGGCTCA+AGG | - | chr7_4:1463241-1463260 | None:intergenic | 50.0% | |
| ! | CTTCTTTTCAGCTAGCGACG+AGG | - | chr7_4:1464132-1464151 | None:intergenic | 50.0% |
| GACCGGTGAATAGGCGAGTT+TGG | + | chr7_4:1459524-1459543 | Msa1134820:intron | 55.0% | |
| GTAGGCGTGGTAGAGGTCTT+AGG | + | chr7_4:1459589-1459608 | Msa1134820:intron | 55.0% | |
| TTCAATGGGATCCAGGAGGG+TGG | + | chr7_4:1462210-1462229 | Msa1134820:intron | 55.0% | |
| GAGGGTGGTCGCTTGTTCAT+TGG | + | chr7_4:1462225-1462244 | Msa1134820:intron | 55.0% | |
| GGTGGTCGCTTGTTCATTGG+AGG | + | chr7_4:1462228-1462247 | Msa1134820:intron | 55.0% | |
| TTCCGGCTCAAGGTGTACCA+AGG | - | chr7_4:1463231-1463250 | None:intergenic | 55.0% | |
| GGAGAGAGGGACCGGTGAAT+AGG | + | chr7_4:1459515-1459534 | Msa1134820:intron | 60.0% | |
| ! | GTCTGCCACTTGACCGACTG+CGG | - | chr7_4:1460914-1460933 | None:intergenic | 60.0% |
| TGAACAAGCGACCACCCTCC+TGG | - | chr7_4:1462224-1462243 | None:intergenic | 60.0% | |
| ACTGACGCAGTCGGAAGCAG+AGG | - | chr7_4:1462601-1462620 | None:intergenic | 60.0% | |
| GCAGGAGGTTCATGGAGGGC+AGG | + | chr7_4:1459557-1459576 | Msa1134820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 1458703 | 1464289 | 1458703 | ID=Msa1134820;Name=Msa1134820 |
| chr7_4 | mRNA | 1458703 | 1464289 | 1458703 | ID=Msa1134820-mRNA-1;Parent=Msa1134820;Name=Msa1134820-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|3|0|148 |
| chr7_4 | exon | 1458703 | 1458732 | 1458703 | ID=Msa1134820-mRNA-1:exon:570;Parent=Msa1134820-mRNA-1 |
| chr7_4 | exon | 1460103 | 1460324 | 1460103 | ID=Msa1134820-mRNA-1:exon:571;Parent=Msa1134820-mRNA-1 |
| chr7_4 | exon | 1464095 | 1464289 | 1464095 | ID=Msa1134820-mRNA-1:exon:572;Parent=Msa1134820-mRNA-1 |
| chr7_4 | CDS | 1458703 | 1458732 | 1458703 | ID=Msa1134820-mRNA-1:cds;Parent=Msa1134820-mRNA-1 |
| chr7_4 | CDS | 1460103 | 1460324 | 1460103 | ID=Msa1134820-mRNA-1:cds;Parent=Msa1134820-mRNA-1 |
| chr7_4 | CDS | 1464095 | 1464289 | 1464095 | ID=Msa1134820-mRNA-1:cds;Parent=Msa1134820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
