Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439110 | OXK38117.1 | 81.250 | 80 | 15 | 0 | 4 | 83 | 41 | 120 | 1.83e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439110 | sp|P07689|RBS3_PEA | 78.481 | 79 | 17 | 0 | 5 | 83 | 99 | 177 | 2.13e-42 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439110 | A0A396GUJ1 | 80.488 | 82 | 16 | 0 | 4 | 85 | 99 | 180 | 1.61e-42 | 148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0439110 | Msa1134820 | 0.876020 | 1.945913e-68 | -8.615850e-47 |
| Msa0439110 | Msa1349720 | 0.808128 | 3.605430e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439110 | MtrunA17_Chr7g0215431 | 80.488 | 82 | 16 | 0 | 4 | 85 | 99 | 180 | 3.11e-46 | 148 |
| Msa0439110 | MtrunA17_Chr7g0215351 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 3.66e-46 | 148 |
| Msa0439110 | MtrunA17_Chr7g0215381 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 4.17e-46 | 148 |
| Msa0439110 | MtrunA17_Chr7g0215361 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 4.26e-46 | 148 |
| Msa0439110 | MtrunA17_Chr7g0215421 | 79.268 | 82 | 17 | 0 | 4 | 85 | 99 | 180 | 6.38e-46 | 147 |
| Msa0439110 | MtrunA17_Chr6g0457471 | 81.013 | 79 | 15 | 0 | 5 | 83 | 99 | 177 | 5.78e-45 | 145 |
| Msa0439110 | MtrunA17_Chr6g0457461 | 81.013 | 79 | 15 | 0 | 5 | 83 | 96 | 174 | 1.46e-44 | 144 |
| Msa0439110 | MtrunA17_Chr4g0072241 | 50.000 | 72 | 36 | 0 | 12 | 83 | 96 | 167 | 2.82e-25 | 94.7 |
| Msa0439110 | MtrunA17_Chr7g0215111 | 58.333 | 72 | 26 | 2 | 75 | 145 | 3 | 71 | 1.15e-18 | 75.5 |
| Msa0439110 | MtrunA17_Chr3g0080851 | 63.934 | 61 | 22 | 0 | 85 | 145 | 8 | 68 | 4.75e-18 | 78.6 |
| Msa0439110 | MtrunA17_Chr3g0084891 | 64.912 | 57 | 20 | 0 | 89 | 145 | 11 | 67 | 3.68e-16 | 72.8 |
| Msa0439110 | MtrunA17_Chr3g0084901 | 64.912 | 57 | 20 | 0 | 89 | 145 | 11 | 67 | 6.57e-16 | 72.8 |
| Msa0439110 | MtrunA17_Chr7g0225071 | 68.519 | 54 | 16 | 1 | 93 | 145 | 2 | 55 | 4.39e-15 | 70.5 |
| Msa0439110 | MtrunA17_Chr7g0223091 | 66.667 | 54 | 17 | 1 | 93 | 145 | 2 | 55 | 1.85e-14 | 68.6 |
| Msa0439110 | MtrunA17_Chr6g0471071 | 54.167 | 72 | 28 | 2 | 75 | 145 | 2 | 69 | 4.70e-14 | 67.8 |
| Msa0439110 | MtrunA17_Chr2g0315111 | 59.677 | 62 | 24 | 1 | 85 | 145 | 9 | 70 | 6.14e-14 | 67.4 |
| Msa0439110 | MtrunA17_Chr3g0084911 | 62.264 | 53 | 20 | 0 | 93 | 145 | 2 | 54 | 7.02e-14 | 67.0 |
| Msa0439110 | MtrunA17_Chr3g0084611 | 66.038 | 53 | 17 | 1 | 93 | 145 | 2 | 53 | 2.36e-13 | 65.5 |
| Msa0439110 | MtrunA17_Chr3g0084601 | 60.377 | 53 | 21 | 0 | 93 | 145 | 2 | 54 | 3.07e-13 | 65.5 |
| Msa0439110 | MtrunA17_Chr6g0471151 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471131 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471101 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471141 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 5.73e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471081 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 6.03e-13 | 63.9 |
| Msa0439110 | MtrunA17_Chr6g0471111 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 8.07e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471091 | 54.286 | 70 | 27 | 2 | 75 | 143 | 2 | 67 | 8.15e-13 | 64.3 |
| Msa0439110 | MtrunA17_Chr6g0471171 | 62.963 | 54 | 19 | 1 | 93 | 145 | 2 | 55 | 9.52e-13 | 63.9 |
| Msa0439110 | MtrunA17_Chr6g0471121 | 50.685 | 73 | 31 | 2 | 75 | 146 | 2 | 70 | 1.12e-12 | 63.9 |
| Msa0439110 | MtrunA17_Chr6g0471161 | 50.685 | 73 | 31 | 2 | 75 | 146 | 2 | 70 | 1.12e-12 | 63.9 |
| Msa0439110 | MtrunA17_Chr3g0084591 | 66.667 | 45 | 15 | 0 | 101 | 145 | 12 | 56 | 2.89e-11 | 59.7 |
| Msa0439110 | MtrunA17_Chr3g0084581 | 66.667 | 45 | 15 | 0 | 101 | 145 | 12 | 56 | 2.97e-11 | 59.7 |
| Msa0439110 | MtrunA17_Chr6g0471061 | 57.407 | 54 | 22 | 1 | 93 | 145 | 2 | 55 | 8.08e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439110 | AT1G67090.1 | 70.000 | 80 | 24 | 0 | 5 | 84 | 97 | 176 | 3.81e-38 | 128 |
| Msa0439110 | AT5G38410.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 1.49e-37 | 127 |
| Msa0439110 | AT5G38420.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.04e-37 | 126 |
| Msa0439110 | AT5G38430.1 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.09e-37 | 126 |
| Msa0439110 | AT5G38430.2 | 68.750 | 80 | 25 | 0 | 5 | 84 | 97 | 176 | 2.09e-37 | 126 |
| Msa0439110 | AT5G38410.3 | 73.973 | 73 | 19 | 0 | 12 | 84 | 109 | 181 | 2.65e-37 | 126 |
| Msa0439110 | AT5G38410.2 | 72.059 | 68 | 19 | 0 | 17 | 84 | 102 | 169 | 4.79e-33 | 115 |
Find 23 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACAAAATTCAATGAT+TGG | 0.329151 | 3_3:-4637453 | None:intergenic |
| GAAGAAGGTTATGTTCATAA+TGG | 0.333247 | 3_3:+4642893 | Msa0439110:CDS |
| GGTACTATGACGGACGTTAC+TGG | 0.352983 | 3_3:+4638885 | Msa0439110:CDS |
| TTGAACAAAATTCAATGATT+GGG | 0.379892 | 3_3:-4637452 | None:intergenic |
| ATGTGGAAGTTGCCTTTGTT+TGG | 0.411503 | 3_3:+4638911 | Msa0439110:CDS |
| TGATGTTTCTCAAGTGTTGA+AGG | 0.415692 | 3_3:+4638940 | Msa0439110:CDS |
| AAGAAGGTTATGTTCATAAT+GGG | 0.419211 | 3_3:+4642894 | Msa0439110:CDS |
| ATGATACGGACAAAGGCATC+AGG | 0.443523 | 3_3:-4638989 | None:intergenic |
| GATGCCTTTGTCCGTATCAT+CGG | 0.484184 | 3_3:+4638992 | Msa0439110:CDS |
| TTGAATTGATGATTTCATAG+AGG | 0.522562 | 3_3:-4642968 | None:intergenic |
| CGTGAGAACCACAATTCACC+AGG | 0.538607 | 3_3:+4638863 | Msa0439110:CDS |
| CATAGTACCCTGGTGAATTG+TGG | 0.548690 | 3_3:-4638871 | None:intergenic |
| GTCGCTAGCTGAAAAGAAGA+AGG | 0.564047 | 3_3:+4642878 | Msa0439110:CDS |
| CATAGTCGAATCCGATGATA+CGG | 0.581215 | 3_3:-4639003 | None:intergenic |
| CTGGTGAATTGTGGTTCTCA+CGG | 0.610345 | 3_3:-4638862 | None:intergenic |
| ACATCAGTTGCTCCAAACAA+AGG | 0.611433 | 3_3:-4638923 | None:intergenic |
| ATAATGGGTGCAACATACAT+CGG | 0.613820 | 3_3:+4642909 | Msa0439110:CDS |
| AATTCACCAGGGTACTATGA+CGG | 0.642388 | 3_3:+4638875 | Msa0439110:CDS |
| TGATACGGACAAAGGCATCA+GGG | 0.656050 | 3_3:-4638988 | None:intergenic |
| TAACGTCCGTCATAGTACCC+TGG | 0.678042 | 3_3:-4638881 | None:intergenic |
| GAATCCGATGATACGGACAA+AGG | 0.687909 | 3_3:-4638996 | None:intergenic |
| ACGGACGTTACTGGACAATG+TGG | 0.708236 | 3_3:+4638894 | Msa0439110:CDS |
| GTGAGAACCACAATTCACCA+GGG | 0.719424 | 3_3:+4638864 | Msa0439110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAATAAATAAAAATCT+TGG | - | chr3_3:4637772-4637791 | None:intergenic | 10.0% |
| !!! | GTAATAGTATTTTAAATATT+TGG | + | chr3_3:4638381-4638400 | Msa0439110:intron | 10.0% |
| !! | ATTAAAAACAAAATATTTGT+AGG | - | chr3_3:4638414-4638433 | None:intergenic | 10.0% |
| !!! | TGAAATTAGTAAAATTTTAT+AGG | + | chr3_3:4642177-4642196 | Msa0439110:intron | 10.0% |
| !! | GGAAAATATATTAAAATAAT+TGG | - | chr3_3:4642209-4642228 | None:intergenic | 10.0% |
| !!! | AATACATTTATTTTGTATTT+GGG | + | chr3_3:4642259-4642278 | Msa0439110:intron | 10.0% |
| !! | AAAAAGATAACAATTATTTA+TGG | + | chr3_3:4642422-4642441 | Msa0439110:intron | 10.0% |
| !!! | AAATAATATTATGATTTTTC+CGG | - | chr3_3:4642543-4642562 | None:intergenic | 10.0% |
| !! | TCAAAATTAAAAGTTGTAAA+AGG | + | chr3_3:4638032-4638051 | Msa0439110:intron | 15.0% |
| !! | CAAAATTAAAAGTTGTAAAA+GGG | + | chr3_3:4638033-4638052 | Msa0439110:intron | 15.0% |
| !! | AAAATTAAAAGTTGTAAAAG+GGG | + | chr3_3:4638034-4638053 | Msa0439110:intron | 15.0% |
| !!! | TGAAATGTGTTTTTTTTAAT+AGG | + | chr3_3:4638071-4638090 | Msa0439110:intron | 15.0% |
| !!! | GAAATGTGTTTTTTTTAATA+GGG | + | chr3_3:4638072-4638091 | Msa0439110:intron | 15.0% |
| !!! | AAATGTGTTTTTTTTAATAG+GGG | + | chr3_3:4638073-4638092 | Msa0439110:intron | 15.0% |
| !! | AGAGTTAATAATAAATGAAA+TGG | + | chr3_3:4639165-4639184 | Msa0439110:intron | 15.0% |
| !!! | TGTTTTCAGTATTTTATTTT+TGG | + | chr3_3:4641145-4641164 | Msa0439110:intron | 15.0% |
| !!! | TTTTTTTTTCCATAAAAGAT+TGG | - | chr3_3:4642067-4642086 | None:intergenic | 15.0% |
| !!! | TCTTTTATGGAAAAAAAAAT+AGG | + | chr3_3:4642068-4642087 | Msa0439110:intron | 15.0% |
| !!! | CTTTTATGGAAAAAAAAATA+GGG | + | chr3_3:4642069-4642088 | Msa0439110:intron | 15.0% |
| !!! | GAATACATTTATTTTGTATT+TGG | + | chr3_3:4642258-4642277 | Msa0439110:intron | 15.0% |
| !!! | ATACATTTATTTTGTATTTG+GGG | + | chr3_3:4642260-4642279 | Msa0439110:intron | 15.0% |
| !!! | TATACGAATTTTTTTTTTGA+AGG | + | chr3_3:4642307-4642326 | Msa0439110:intron | 15.0% |
| !!! | TTTTATTTCTCTCTTTTTTT+CGG | - | chr3_3:4642378-4642397 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTATTTTGAC+CGG | + | chr3_3:4642479-4642498 | Msa0439110:intron | 15.0% |
| !! | TTGAACAAAATTCAATGATT+GGG | - | chr3_3:4637455-4637474 | None:intergenic | 20.0% |
| !! | TTTGAACAAAATTCAATGAT+TGG | - | chr3_3:4637456-4637475 | None:intergenic | 20.0% |
| !! | CAATGGATAATCATAATTAT+TGG | + | chr3_3:4637526-4637545 | Msa0439110:intron | 20.0% |
| !! | GATAAAATTCAAGTCTATAA+GGG | - | chr3_3:4637622-4637641 | None:intergenic | 20.0% |
| !! | AGATAAAATTCAAGTCTATA+AGG | - | chr3_3:4637623-4637642 | None:intergenic | 20.0% |
| !!! | TTATTTTGATGTATAACCTA+AGG | + | chr3_3:4637782-4637801 | Msa0439110:intron | 20.0% |
| !! | AAAAGACAATAACACAAATA+AGG | + | chr3_3:4637805-4637824 | Msa0439110:intron | 20.0% |
| !! | AAAATTGAAAGTTGCAAAAA+GGG | - | chr3_3:4637902-4637921 | None:intergenic | 20.0% |
| !!! | AATGTGTTTTTTTTAATAGG+GGG | + | chr3_3:4638074-4638093 | Msa0439110:intron | 20.0% |
| !! | ATATAGTGATGTATGATATA+TGG | + | chr3_3:4638239-4638258 | Msa0439110:intron | 20.0% |
| !! | TTACGAAGAAAAAAATTTCT+CGG | + | chr3_3:4638734-4638753 | Msa0439110:intron | 20.0% |
| !!! | CTTGAAATTTTAACTAACAA+AGG | + | chr3_3:4639245-4639264 | Msa0439110:intron | 20.0% |
| !! | TTTCTTTAATATCATACTGT+TGG | - | chr3_3:4639273-4639292 | None:intergenic | 20.0% |
| !! | AAGGAAGTTATATATAGAAT+AGG | - | chr3_3:4639756-4639775 | None:intergenic | 20.0% |
| !! | ACTTAAAATGTTATTCATGA+AGG | - | chr3_3:4639775-4639794 | None:intergenic | 20.0% |
| !! | TTTACAAAGAGATACAAAAA+AGG | + | chr3_3:4640363-4640382 | Msa0439110:intron | 20.0% |
| !! | TTACAAAGAGATACAAAAAA+GGG | + | chr3_3:4640364-4640383 | Msa0439110:intron | 20.0% |
| !!! | GTATAAATTAGGTTTTTTCT+TGG | - | chr3_3:4640418-4640437 | None:intergenic | 20.0% |
| !!! | GAATAATTTTAGGAAATCAA+AGG | - | chr3_3:4640556-4640575 | None:intergenic | 20.0% |
| !!! | TTCCTAAAATTATTCTCTTT+TGG | + | chr3_3:4640561-4640580 | Msa0439110:intron | 20.0% |
| !!! | AACCAAAAGAGAATAATTTT+AGG | - | chr3_3:4640566-4640585 | None:intergenic | 20.0% |
| !! | TTTCTTTGAATTTCATTCAA+TGG | + | chr3_3:4640940-4640959 | Msa0439110:intron | 20.0% |
| !! | TTCTTTGAATTTCATTCAAT+GGG | + | chr3_3:4640941-4640960 | Msa0439110:intron | 20.0% |
| !!! | AACTTATTTCTTTTCAATCT+AGG | + | chr3_3:4641305-4641324 | Msa0439110:intron | 20.0% |
| !! | TTGCAATAAATTATCAACAT+AGG | + | chr3_3:4641476-4641495 | Msa0439110:intron | 20.0% |
| !! | TGCAATAAATTATCAACATA+GGG | + | chr3_3:4641477-4641496 | Msa0439110:intron | 20.0% |
| !! | AAAGAATCAACAATATTCAA+CGG | - | chr3_3:4641660-4641679 | None:intergenic | 20.0% |
| !!! | ATATTAAGCTTATTTCCTTT+TGG | + | chr3_3:4641829-4641848 | Msa0439110:intron | 20.0% |
| !!! | GAACTTTTGTTGTAATTATT+CGG | + | chr3_3:4641943-4641962 | Msa0439110:intron | 20.0% |
| !!! | ATAGGGCTTAAATAAATTTT+TGG | + | chr3_3:4642086-4642105 | Msa0439110:intron | 20.0% |
| !!! | CATTAGTTTTAAAAGAGTTT+TGG | - | chr3_3:4642239-4642258 | None:intergenic | 20.0% |
| !!! | TTTATTTCTCTCTTTTTTTC+GGG | - | chr3_3:4642377-4642396 | None:intergenic | 20.0% |
| !! | GAAAAAAAGAGAGAAATAAA+AGG | + | chr3_3:4642377-4642396 | Msa0439110:intron | 20.0% |
| !! | AAAATTTATTGTATGTTTCC+TGG | + | chr3_3:4642592-4642611 | Msa0439110:intron | 20.0% |
| !!! | TTTTTTTTGACAAAAGAAGA+GGG | - | chr3_3:4642731-4642750 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGACAAAAGAAG+AGG | - | chr3_3:4642732-4642751 | None:intergenic | 20.0% |
| !! | TATACATCAAAAAAATCTCA+CGG | + | chr3_3:4642842-4642861 | Msa0439110:CDS | 20.0% |
| !!! | TTATCCATTGTGATTGATTT+TGG | - | chr3_3:4637516-4637535 | None:intergenic | 25.0% |
| !! | TTGCAACTAGTTTAAAGTTA+GGG | - | chr3_3:4637850-4637869 | None:intergenic | 25.0% |
| !! | ATTGCAACTAGTTTAAAGTT+AGG | - | chr3_3:4637851-4637870 | None:intergenic | 25.0% |
| !!! | GGAAACTTTTTTTTAATAGG+GGG | - | chr3_3:4637879-4637898 | None:intergenic | 25.0% |
| !!! | GGGAAACTTTTTTTTAATAG+GGG | - | chr3_3:4637880-4637899 | None:intergenic | 25.0% |
| !!! | GGGGAAACTTTTTTTTAATA+GGG | - | chr3_3:4637881-4637900 | None:intergenic | 25.0% |
| ! | AAATTGAAAGTTGCAAAAAG+GGG | - | chr3_3:4637901-4637920 | None:intergenic | 25.0% |
| ! | CAAAATTGAAAGTTGCAAAA+AGG | - | chr3_3:4637903-4637922 | None:intergenic | 25.0% |
| ! | TAAAAATCAACCATTCAAGA+TGG | - | chr3_3:4638008-4638027 | None:intergenic | 25.0% |
| ! | ATTGCAACTAATACAAAGTT+AGG | + | chr3_3:4638102-4638121 | Msa0439110:intron | 25.0% |
| ! | TTGCAACTAATACAAAGTTA+GGG | + | chr3_3:4638103-4638122 | Msa0439110:intron | 25.0% |
| !!! | ATTTTGAACTAGTATCGAAA+TGG | + | chr3_3:4638148-4638167 | Msa0439110:intron | 25.0% |
| ! | TCTTATACATGTTGTCAATA+AGG | + | chr3_3:4638176-4638195 | Msa0439110:intron | 25.0% |
| ! | GGTTAAAAAAACGCATATTT+CGG | - | chr3_3:4638601-4638620 | None:intergenic | 25.0% |
| ! | ATAGAACATCCAAAATATCA+AGG | + | chr3_3:4638762-4638781 | Msa0439110:intron | 25.0% |
| ! | AAGTAAGAAGAACTTAATTG+TGG | - | chr3_3:4638800-4638819 | None:intergenic | 25.0% |
| !! | GAACAATTTTTCTCTGTTTT+TGG | + | chr3_3:4639104-4639123 | Msa0439110:intron | 25.0% |
| !!! | ATATGTTGTTTTCCTTGTAA+TGG | + | chr3_3:4639216-4639235 | Msa0439110:intron | 25.0% |
| ! | GAAAATGAGAAAGAATTATC+TGG | - | chr3_3:4639310-4639329 | None:intergenic | 25.0% |
| ! | GTATTGAATGTGCATTATTT+AGG | - | chr3_3:4639334-4639353 | None:intergenic | 25.0% |
| ! | ATAAATGAAAATCATGCAGA+AGG | - | chr3_3:4639475-4639494 | None:intergenic | 25.0% |
| !! | GTATTTTGTCCATTCATAAA+AGG | - | chr3_3:4639564-4639583 | None:intergenic | 25.0% |
| !!! | TCAAGTCAAAGTTTTATCTA+AGG | - | chr3_3:4639816-4639835 | None:intergenic | 25.0% |
| !! | GAATAGTAAAATCAGGTTTT+TGG | - | chr3_3:4639924-4639943 | None:intergenic | 25.0% |
| ! | AATCAATTCTGTTGTGAATT+CGG | + | chr3_3:4640094-4640113 | Msa0439110:intron | 25.0% |
| ! | ACCAATGAAATTTAGATTCA+TGG | + | chr3_3:4640133-4640152 | Msa0439110:intron | 25.0% |
| ! | TCCATGAATCTAAATTTCAT+TGG | - | chr3_3:4640137-4640156 | None:intergenic | 25.0% |
| !! | TCTTTATCTTGTTTCTTCTT+TGG | - | chr3_3:4640260-4640279 | None:intergenic | 25.0% |
| ! | AAATAACTGTTTACCTAGTT+CGG | + | chr3_3:4640303-4640322 | Msa0439110:intron | 25.0% |
| !! | TTGGGAAAAAGGTATAAATT+AGG | - | chr3_3:4640429-4640448 | None:intergenic | 25.0% |
| !! | TCTAGAGTTGAAAAACAATT+GGG | - | chr3_3:4640502-4640521 | None:intergenic | 25.0% |
| !!! | TTCTAGAGTTGAAAAACAAT+TGG | - | chr3_3:4640503-4640522 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAATCAAAGGATA+TGG | - | chr3_3:4640550-4640569 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTTCGACAAAAAT+CGG | - | chr3_3:4640703-4640722 | None:intergenic | 25.0% |
| ! | ATTTGAAGATACAATGTGAA+GGG | - | chr3_3:4640733-4640752 | None:intergenic | 25.0% |
| ! | TATTTGAAGATACAATGTGA+AGG | - | chr3_3:4640734-4640753 | None:intergenic | 25.0% |
| !!! | AATGGAAATAGTTTTGATGT+TGG | + | chr3_3:4640888-4640907 | Msa0439110:intron | 25.0% |
| !!! | TATTTTATTTTTGGCCCATT+AGG | + | chr3_3:4641154-4641173 | Msa0439110:intron | 25.0% |
| !!! | ATTTTATTTTTGGCCCATTA+GGG | + | chr3_3:4641155-4641174 | Msa0439110:intron | 25.0% |
| !! | GCAACTATTAAGCTTTAATA+GGG | - | chr3_3:4641192-4641211 | None:intergenic | 25.0% |
| !! | TGCAACTATTAAGCTTTAAT+AGG | - | chr3_3:4641193-4641212 | None:intergenic | 25.0% |
| ! | TATTAAAGCTTAATAGTTGC+AGG | + | chr3_3:4641192-4641211 | Msa0439110:intron | 25.0% |
| ! | ATTAAAGCTTAATAGTTGCA+GGG | + | chr3_3:4641193-4641212 | Msa0439110:intron | 25.0% |
| !! | TATAGAGTTTTCTCAATTTC+TGG | + | chr3_3:4641242-4641261 | Msa0439110:intron | 25.0% |
| ! | GCAATAAATTATCAACATAG+GGG | + | chr3_3:4641478-4641497 | Msa0439110:intron | 25.0% |
| !!! | ACAACCCAACATTTATTTTT+AGG | + | chr3_3:4641570-4641589 | Msa0439110:intron | 25.0% |
| ! | GCAACCTAAAAATAAATGTT+GGG | - | chr3_3:4641577-4641596 | None:intergenic | 25.0% |
| ! | TGCAACCTAAAAATAAATGT+TGG | - | chr3_3:4641578-4641597 | None:intergenic | 25.0% |
| !!! | GTTGATTCTTTTTTACAGTT+TGG | + | chr3_3:4641669-4641688 | Msa0439110:intron | 25.0% |
| !! | AAATGCTCATATTCAGATTT+TGG | + | chr3_3:4641803-4641822 | Msa0439110:intron | 25.0% |
| !!! | GTTTTAAAAGAGTTTTGGAT+CGG | - | chr3_3:4642234-4642253 | None:intergenic | 25.0% |
| !!! | TTATTTTGTATTTGGGGTTT+AGG | + | chr3_3:4642266-4642285 | Msa0439110:intron | 25.0% |
| !!! | TATTTTGTATTTGGGGTTTA+GGG | + | chr3_3:4642267-4642286 | Msa0439110:intron | 25.0% |
| !!! | TGTTTTTCTAGAAAGTAGTT+AGG | - | chr3_3:4642456-4642475 | None:intergenic | 25.0% |
| !!! | TTACGTTTTTCTAGAAAGTA+CGG | - | chr3_3:4642501-4642520 | None:intergenic | 25.0% |
| ! | AATCGAAATAACTAAGAAGA+GGG | - | chr3_3:4642761-4642780 | None:intergenic | 25.0% |
| ! | AAGAAGGTTATGTTCATAAT+GGG | + | chr3_3:4642894-4642913 | Msa0439110:CDS | 25.0% |
| !! | ACTATACTTTTCATCTACTT+AGG | + | chr3_3:4642936-4642955 | Msa0439110:CDS | 25.0% |
| !! | TTGAATTGATGATTTCATAG+AGG | - | chr3_3:4642971-4642990 | None:intergenic | 25.0% |
| GTTTCCAAAATCAATCACAA+TGG | + | chr3_3:4637509-4637528 | Msa0439110:intron | 30.0% | |
| TCAATTCCACATCACATATT+AGG | - | chr3_3:4637557-4637576 | None:intergenic | 30.0% | |
| TTCATACTTTGATACCTTGT+TGG | + | chr3_3:4637583-4637602 | Msa0439110:intron | 30.0% | |
| GAATCAAGTACATAAGTAGA+TGG | + | chr3_3:4637663-4637682 | Msa0439110:intron | 30.0% | |
| ATAACGAAAGCAATTGGAAT+TGG | - | chr3_3:4637703-4637722 | None:intergenic | 30.0% | |
| TTGTTCATAACGAAAGCAAT+TGG | - | chr3_3:4637709-4637728 | None:intergenic | 30.0% | |
| ! | GAACAAAACCTTGTTCTTTT+CGG | + | chr3_3:4637723-4637742 | Msa0439110:intron | 30.0% |
| !! | TGTGTTATTGTCTTTTCCTT+AGG | - | chr3_3:4637801-4637820 | None:intergenic | 30.0% |
| ! | TGCAACTAGTTTAAAGTTAG+GGG | - | chr3_3:4637849-4637868 | None:intergenic | 30.0% |
| CTTTAAACTAGTTGCAATCT+TGG | + | chr3_3:4637853-4637872 | Msa0439110:intron | 30.0% | |
| !!! | GGGGGAAACTTTTTTTTAAT+AGG | - | chr3_3:4637882-4637901 | None:intergenic | 30.0% |
| AATTGAAAGTTGCAAAAAGG+GGG | - | chr3_3:4637900-4637919 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTAGCAAGTTTC+AGG | + | chr3_3:4637966-4637985 | Msa0439110:intron | 30.0% |
| TTGTAAAAGGGGAAAACTTA+AGG | + | chr3_3:4638045-4638064 | Msa0439110:intron | 30.0% | |
| TGTAAAAGGGGAAAACTTAA+GGG | + | chr3_3:4638046-4638065 | Msa0439110:intron | 30.0% | |
| ATGTATGATATATGGAGAGA+GGG | + | chr3_3:4638247-4638266 | Msa0439110:intron | 30.0% | |
| ATTACAAGACCATAACACTA+CGG | - | chr3_3:4638366-4638385 | None:intergenic | 30.0% | |
| CGAATGCATGTTTATATCAA+AGG | + | chr3_3:4638496-4638515 | Msa0439110:intron | 30.0% | |
| TAAGAAGAACTTAATTGTGG+AGG | - | chr3_3:4638797-4638816 | None:intergenic | 30.0% | |
| ACTAAAACTTAGTAAACTGG+TGG | - | chr3_3:4639067-4639086 | None:intergenic | 30.0% | |
| GAGAAAAATTGTTCTTCAAG+TGG | - | chr3_3:4639098-4639117 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGATTTTCGCTTT+TGG | + | chr3_3:4639118-4639137 | Msa0439110:intron | 30.0% |
| GGATTTCAAATGCAAATGTA+TGG | + | chr3_3:4639139-4639158 | Msa0439110:intron | 30.0% | |
| ATCTTCGTACGCTAAATTTA+AGG | + | chr3_3:4639437-4639456 | Msa0439110:intron | 30.0% | |
| AGACTGTGAATAGTAAAATC+AGG | - | chr3_3:4639931-4639950 | None:intergenic | 30.0% | |
| AAAAGGTTGAATCATTCTGT+CGG | + | chr3_3:4640014-4640033 | Msa0439110:intron | 30.0% | |
| !! | TTTTTCAATTGATGCCCAAA+AGG | + | chr3_3:4640056-4640075 | Msa0439110:intron | 30.0% |
| ! | CTACAATTTACGTTCCTTTT+GGG | - | chr3_3:4640073-4640092 | None:intergenic | 30.0% |
| ! | ACTACAATTTACGTTCCTTT+TGG | - | chr3_3:4640074-4640093 | None:intergenic | 30.0% |
| AATTTCATTGGTGTGAGATT+TGG | - | chr3_3:4640125-4640144 | None:intergenic | 30.0% | |
| !! | CTTGTGGTTATTTTGCTTAT+TGG | - | chr3_3:4640177-4640196 | None:intergenic | 30.0% |
| GAACTAGGTAAACAGTTATT+TGG | - | chr3_3:4640304-4640323 | None:intergenic | 30.0% | |
| !!! | ATATGGATTGGTTCTCTTTT+GGG | - | chr3_3:4640533-4640552 | None:intergenic | 30.0% |
| !! | AATTTTGGAAAACACATCAG+AGG | - | chr3_3:4640623-4640642 | None:intergenic | 30.0% |
| !!! | TTTTAGTTCGACAAAAATCG+GGG | - | chr3_3:4640701-4640720 | None:intergenic | 30.0% |
| !!! | GTTTTAGTTCGACAAAAATC+GGG | - | chr3_3:4640702-4640721 | None:intergenic | 30.0% |
| TAGGAATTTGTGAGCTATTA+TGG | - | chr3_3:4640775-4640794 | None:intergenic | 30.0% | |
| AAATATAGAGTTATGGCACT+AGG | - | chr3_3:4640794-4640813 | None:intergenic | 30.0% | |
| TGAGGCAAAATATAGAGTTA+TGG | - | chr3_3:4640801-4640820 | None:intergenic | 30.0% | |
| !!! | TCGAGTTTTGTGTTTTGATT+AGG | - | chr3_3:4640857-4640876 | None:intergenic | 30.0% |
| ATCAAAACACAAAACTCGAA+TGG | + | chr3_3:4640858-4640877 | Msa0439110:intron | 30.0% | |
| TCAAAACACAAAACTCGAAT+GGG | + | chr3_3:4640859-4640878 | Msa0439110:intron | 30.0% | |
| GGAAATAACAAAACCCTAAT+GGG | - | chr3_3:4641171-4641190 | None:intergenic | 30.0% | |
| !! | AACTTGTTAAAATAGGGTTC+CGG | - | chr3_3:4641274-4641293 | None:intergenic | 30.0% |
| !! | GCGACAAACTTGTTAAAATA+GGG | - | chr3_3:4641280-4641299 | None:intergenic | 30.0% |
| !! | AGCGACAAACTTGTTAAAAT+AGG | - | chr3_3:4641281-4641300 | None:intergenic | 30.0% |
| TTTATCCACAATAAGTCTGA+TGG | - | chr3_3:4641414-4641433 | None:intergenic | 30.0% | |
| ATCAGACTTATTGTGGATAA+AGG | + | chr3_3:4641413-4641432 | Msa0439110:intron | 30.0% | |
| ACACATAATTGAGACTCATT+AGG | - | chr3_3:4641528-4641547 | None:intergenic | 30.0% | |
| ATCAACAATATTCAACGGAT+TGG | - | chr3_3:4641655-4641674 | None:intergenic | 30.0% | |
| ! | TTACAGTTTGGTAGCTTATT+AGG | + | chr3_3:4641681-4641700 | Msa0439110:intron | 30.0% |
| TAGGTTATGTTAAATCACGT+CGG | + | chr3_3:4641700-4641719 | Msa0439110:intron | 30.0% | |
| GGTCATTTATGTTCTTCAAT+TGG | + | chr3_3:4641721-4641740 | Msa0439110:intron | 30.0% | |
| ! | TTAAGCTTATTTCCTTTTGG+TGG | + | chr3_3:4641832-4641851 | Msa0439110:intron | 30.0% |
| !! | TTTAGCTTTAAACCACCAAA+AGG | - | chr3_3:4641847-4641866 | None:intergenic | 30.0% |
| TTCTGTATCAGTTTCATGTT+TGG | + | chr3_3:4641877-4641896 | Msa0439110:intron | 30.0% | |
| ! | AATTATTCGGTTTTCTTCCT+TGG | + | chr3_3:4641956-4641975 | Msa0439110:intron | 30.0% |
| ! | TTTCCATAAAAGATTGGCTA+AGG | - | chr3_3:4642061-4642080 | None:intergenic | 30.0% |
| ! | CTCTCTTAAATTTTCCTTAG+CGG | - | chr3_3:4642149-4642168 | None:intergenic | 30.0% |
| TCGGGTGAAAAATATGTTAT+TGG | - | chr3_3:4642359-4642378 | None:intergenic | 30.0% | |
| ! | AAGAGGTATATATAGCACAA+TGG | + | chr3_3:4642616-4642635 | Msa0439110:intron | 30.0% |
| CAATCGAAATAACTAAGAAG+AGG | - | chr3_3:4642762-4642781 | None:intergenic | 30.0% | |
| GAAGAAGGTTATGTTCATAA+TGG | + | chr3_3:4642893-4642912 | Msa0439110:CDS | 30.0% | |
| ! | TTTGATACCTTGTTGGTGAA+AGG | + | chr3_3:4637590-4637609 | Msa0439110:intron | 35.0% |
| ! | GCAACTAGTTTAAAGTTAGG+GGG | - | chr3_3:4637848-4637867 | None:intergenic | 35.0% |
| ! | TTTTACTGTCCTGAATGGTT+GGG | - | chr3_3:4637936-4637955 | None:intergenic | 35.0% |
| ! | TTTTTACTGTCCTGAATGGT+TGG | - | chr3_3:4637937-4637956 | None:intergenic | 35.0% |
| !!! | CTTGTTTTTACTGTCCTGAA+TGG | - | chr3_3:4637941-4637960 | None:intergenic | 35.0% |
| TTCAGGACAGTAAAAACAAG+CGG | + | chr3_3:4637941-4637960 | Msa0439110:intron | 35.0% | |
| CAACTAATACAAAGTTAGGG+AGG | + | chr3_3:4638106-4638125 | Msa0439110:intron | 35.0% | |
| GATGTATGATATATGGAGAG+AGG | + | chr3_3:4638246-4638265 | Msa0439110:intron | 35.0% | |
| !! | GAGTTTGGAATCAATTTTGC+AGG | + | chr3_3:4638284-4638303 | Msa0439110:intron | 35.0% |
| !! | TTTGGAATCAATTTTGCAGG+AGG | + | chr3_3:4638287-4638306 | Msa0439110:intron | 35.0% |
| TTACAAGACCATAACACTAC+GGG | - | chr3_3:4638365-4638384 | None:intergenic | 35.0% | |
| ! | TTAACCACAATTTGCCCTTT+TGG | + | chr3_3:4638615-4638634 | Msa0439110:intron | 35.0% |
| ! | TAACCACAATTTGCCCTTTT+GGG | + | chr3_3:4638616-4638635 | Msa0439110:intron | 35.0% |
| ! | GAATGTTGATTGTGAAGTGA+TGG | + | chr3_3:4638661-4638680 | Msa0439110:intron | 35.0% |
| ! | TACGGTTGTCCTTGATATTT+TGG | - | chr3_3:4638774-4638793 | None:intergenic | 35.0% |
| AGAACTTAATTGTGGAGGTA+CGG | - | chr3_3:4638792-4638811 | None:intergenic | 35.0% | |
| TTTCTGCAAGTTATCAAAGG+TGG | - | chr3_3:4638831-4638850 | None:intergenic | 35.0% | |
| ! | ACCTTTGATAACTTGCAGAA+AGG | + | chr3_3:4638830-4638849 | Msa0439110:intron | 35.0% |
| TCCTTTCTGCAAGTTATCAA+AGG | - | chr3_3:4638834-4638853 | None:intergenic | 35.0% | |
| !! | TGATGTTTCTCAAGTGTTGA+AGG | + | chr3_3:4638940-4638959 | Msa0439110:CDS | 35.0% |
| GGGACTAAAACTTAGTAAAC+TGG | - | chr3_3:4639070-4639089 | None:intergenic | 35.0% | |
| ! | TTCAAGTTCAAGCCATTACA+AGG | - | chr3_3:4639231-4639250 | None:intergenic | 35.0% |
| ATGCAATAAAGCGTGTAACT+TGG | - | chr3_3:4639532-4639551 | None:intergenic | 35.0% | |
| CCATTCATAAAAGGTCGAAT+TGG | - | chr3_3:4639555-4639574 | None:intergenic | 35.0% | |
| ! | CCAATTCGACCTTTTATGAA+TGG | + | chr3_3:4639552-4639571 | Msa0439110:intron | 35.0% |
| AAATTGACCGTCACAATTGT+AGG | + | chr3_3:4639588-4639607 | Msa0439110:intron | 35.0% | |
| AATTGACCGTCACAATTGTA+GGG | + | chr3_3:4639589-4639608 | Msa0439110:intron | 35.0% | |
| ! | CTTTTTCCCTACAATTGTGA+CGG | - | chr3_3:4639598-4639617 | None:intergenic | 35.0% |
| GTAAGATCATGCAACAACTT+TGG | - | chr3_3:4639627-4639646 | None:intergenic | 35.0% | |
| ATATCTACCAACAGATGAAG+AGG | - | chr3_3:4639694-4639713 | None:intergenic | 35.0% | |
| TTCCAAGCTTGCAAGTAAAA+AGG | + | chr3_3:4639997-4640016 | Msa0439110:intron | 35.0% | |
| ! | AACCTTTTTACTTGCAAGCT+TGG | - | chr3_3:4640002-4640021 | None:intergenic | 35.0% |
| ! | AGAATTGTTGTTGTTGCTTG+TGG | - | chr3_3:4640193-4640212 | None:intergenic | 35.0% |
| !! | TTGTGGTTTTGCTTTACACT+TGG | - | chr3_3:4640232-4640251 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTGGTTCGATTG+TGG | - | chr3_3:4640249-4640268 | None:intergenic | 35.0% |
| GTCTATCATTGACCTACTTT+GGG | + | chr3_3:4640325-4640344 | Msa0439110:intron | 35.0% | |
| TCTATCATTGACCTACTTTG+GGG | + | chr3_3:4640326-4640345 | Msa0439110:intron | 35.0% | |
| ATGGAATGAGATTGGGAAAA+AGG | - | chr3_3:4640440-4640459 | None:intergenic | 35.0% | |
| CTTGTTCATGGAATGAGATT+GGG | - | chr3_3:4640447-4640466 | None:intergenic | 35.0% | |
| ACTTGTTCATGGAATGAGAT+TGG | - | chr3_3:4640448-4640467 | None:intergenic | 35.0% | |
| ATCATTGAGTCACTTGTTCA+TGG | - | chr3_3:4640459-4640478 | None:intergenic | 35.0% | |
| TCAATGATTTCACTCACCAA+AGG | + | chr3_3:4640471-4640490 | Msa0439110:intron | 35.0% | |
| !!! | TATGGATTGGTTCTCTTTTG+GGG | - | chr3_3:4640532-4640551 | None:intergenic | 35.0% |
| !!! | GATATGGATTGGTTCTCTTT+TGG | - | chr3_3:4640534-4640553 | None:intergenic | 35.0% |
| GGAAATCAAAGGATATGGAT+TGG | - | chr3_3:4640545-4640564 | None:intergenic | 35.0% | |
| GTGTACGAATTGGAAAATCT+GGG | - | chr3_3:4640649-4640668 | None:intergenic | 35.0% | |
| TGTGTACGAATTGGAAAATC+TGG | - | chr3_3:4640650-4640669 | None:intergenic | 35.0% | |
| AACAGTTCATACTGCTAGTT+TGG | + | chr3_3:4640911-4640930 | Msa0439110:intron | 35.0% | |
| AATTTCATTCAATGGGATCC+AGG | + | chr3_3:4640948-4640967 | Msa0439110:intron | 35.0% | |
| GGGAAATAACAAAACCCTAA+TGG | - | chr3_3:4641172-4641191 | None:intergenic | 35.0% | |
| !! | TCTCAATTTCTGGTGTATTC+CGG | + | chr3_3:4641252-4641271 | Msa0439110:intron | 35.0% |
| TCTGATGGAATGAAATTGTG+GGG | - | chr3_3:4641399-4641418 | None:intergenic | 35.0% | |
| GTCTGATGGAATGAAATTGT+GGG | - | chr3_3:4641400-4641419 | None:intergenic | 35.0% | |
| AGTCTGATGGAATGAAATTG+TGG | - | chr3_3:4641401-4641420 | None:intergenic | 35.0% | |
| TCATTCCATCAGACTTATTG+TGG | + | chr3_3:4641406-4641425 | Msa0439110:intron | 35.0% | |
| TAGGGGAATTTATTTCGTCA+CGG | + | chr3_3:4641495-4641514 | Msa0439110:intron | 35.0% | |
| GAGTCTCAATTATGTGTTAG+TGG | + | chr3_3:4641531-4641550 | Msa0439110:intron | 35.0% | |
| CAATTATGTGTTAGTGGTTG+CGG | + | chr3_3:4641537-4641556 | Msa0439110:intron | 35.0% | |
| !!! | TTTTTAGGTTGCAGCTTGTT+TGG | + | chr3_3:4641585-4641604 | Msa0439110:intron | 35.0% |
| TTTGGCAACTTCTTCGAAAT+TGG | + | chr3_3:4641613-4641632 | Msa0439110:intron | 35.0% | |
| !! | AAATTGGCTTGGAGTTCATT+CGG | + | chr3_3:4641629-4641648 | Msa0439110:intron | 35.0% |
| CTATGAACTGACTATCTTTC+CGG | - | chr3_3:4641993-4642012 | None:intergenic | 35.0% | |
| ! | TGTCCTTAGCCAATCTTTTA+TGG | + | chr3_3:4642055-4642074 | Msa0439110:intron | 35.0% |
| !!! | TCCTCTAAAATTTTCCGCTA+AGG | + | chr3_3:4642132-4642151 | Msa0439110:intron | 35.0% |
| ! | TCCTTAGCGGAAAATTTTAG+AGG | - | chr3_3:4642136-4642155 | None:intergenic | 35.0% |
| !!! | TAAAAGAGTTTTGGATCGGT+TGG | - | chr3_3:4642230-4642249 | None:intergenic | 35.0% |
| ATTGTATGTTTCCTGGAAAG+AGG | + | chr3_3:4642599-4642618 | Msa0439110:intron | 35.0% | |
| TGCTATATATACCTCTTTCC+AGG | - | chr3_3:4642613-4642632 | None:intergenic | 35.0% | |
| AGGTATATATAGCACAATGG+AGG | + | chr3_3:4642619-4642638 | Msa0439110:intron | 35.0% | |
| !! | ATAATGGGTGCAACATACAT+CGG | + | chr3_3:4642909-4642928 | Msa0439110:CDS | 35.0% |
| !! | CTGAGTTGATGATTTCAGAG+AGG | + | chr3_3:4637641-4637660 | Msa0439110:intron | 40.0% |
| TATGCTAGCCGAAAAGAACA+AGG | - | chr3_3:4637734-4637753 | None:intergenic | 40.0% | |
| ! | TCTTTTCGGCTAGCATATTG+AGG | + | chr3_3:4637737-4637756 | Msa0439110:intron | 40.0% |
| TCATTCAAACCCAACCATTC+AGG | + | chr3_3:4637924-4637943 | Msa0439110:intron | 40.0% | |
| TCAGGACAGTAAAAACAAGC+GGG | + | chr3_3:4637942-4637961 | Msa0439110:intron | 40.0% | |
| TGACCTTCTACCATCTTGAA+TGG | + | chr3_3:4637995-4638014 | Msa0439110:intron | 40.0% | |
| CAACCATTCAAGATGGTAGA+AGG | - | chr3_3:4638001-4638020 | None:intergenic | 40.0% | |
| ! | TCAATTTTGCAGGAGGTTCA+TGG | + | chr3_3:4638294-4638313 | Msa0439110:intron | 40.0% |
| ! | AACCACAATTTGCCCTTTTG+GGG | + | chr3_3:4638617-4638636 | Msa0439110:intron | 40.0% |
| ! | AATTCACCAGGGTACTATGA+CGG | + | chr3_3:4638875-4638894 | Msa0439110:CDS | 40.0% |
| ATGTGGAAGTTGCCTTTGTT+TGG | + | chr3_3:4638911-4638930 | Msa0439110:CDS | 40.0% | |
| ACATCAGTTGCTCCAAACAA+AGG | - | chr3_3:4638926-4638945 | None:intergenic | 40.0% | |
| CATAGTCGAATCCGATGATA+CGG | - | chr3_3:4639006-4639025 | None:intergenic | 40.0% | |
| TTGTTCTTCAAGTGGAAGCA+GGG | - | chr3_3:4639090-4639109 | None:intergenic | 40.0% | |
| ATTGTTCTTCAAGTGGAAGC+AGG | - | chr3_3:4639091-4639110 | None:intergenic | 40.0% | |
| !!! | GAGACTGCAGATTGCTTTTT+TGG | - | chr3_3:4639411-4639430 | None:intergenic | 40.0% |
| CATGCAGAAGGTAAAAGCTA+CGG | - | chr3_3:4639463-4639482 | None:intergenic | 40.0% | |
| CACAAAACCTCTTCATCTGT+TGG | + | chr3_3:4639684-4639703 | Msa0439110:intron | 40.0% | |
| GGTAGATATTCCCGTTTGTT+CGG | + | chr3_3:4639705-4639724 | Msa0439110:intron | 40.0% | |
| TGTTTGCAAAGCCGAACAAA+CGG | - | chr3_3:4639719-4639738 | None:intergenic | 40.0% | |
| CAATGTAAGACACTCTGCAT+TGG | + | chr3_3:4639837-4639856 | Msa0439110:intron | 40.0% | |
| ATCCATTCAACAGCTTGAGA+AGG | - | chr3_3:4639969-4639988 | None:intergenic | 40.0% | |
| GGTCTATCATTGACCTACTT+TGG | + | chr3_3:4640324-4640343 | Msa0439110:intron | 40.0% | |
| !! | AAACAATTGGGAAGCACCTT+TGG | - | chr3_3:4640490-4640509 | None:intergenic | 40.0% |
| !!! | ATGGATTGGTTCTCTTTTGG+GGG | - | chr3_3:4640531-4640550 | None:intergenic | 40.0% |
| ! | GGAAAATCTGGGCACAATTT+TGG | - | chr3_3:4640638-4640657 | None:intergenic | 40.0% |
| CACTTGTACTGTGTACGAAT+TGG | - | chr3_3:4640659-4640678 | None:intergenic | 40.0% | |
| ! | CAAAAATCGGGGTACGATTT+TGG | - | chr3_3:4640690-4640709 | None:intergenic | 40.0% |
| GATACAATGTGAAGGGCAAT+TGG | - | chr3_3:4640726-4640745 | None:intergenic | 40.0% | |
| ! | TTTTGATCCTTGGTGAACTC+TGG | - | chr3_3:4640826-4640845 | None:intergenic | 40.0% |
| GTTCACCAAGGATCAAAATG+TGG | + | chr3_3:4640828-4640847 | Msa0439110:intron | 40.0% | |
| AACTCGAATGGGATGAGAAA+TGG | + | chr3_3:4640870-4640889 | Msa0439110:intron | 40.0% | |
| TTGGAGGAGTCAACAAACAT+AGG | + | chr3_3:4640989-4641008 | Msa0439110:intron | 40.0% | |
| TCCTTATCAGAACGAGAACT+TGG | + | chr3_3:4641019-4641038 | Msa0439110:intron | 40.0% | |
| ACCAAGTTCTCGTTCTGATA+AGG | - | chr3_3:4641023-4641042 | None:intergenic | 40.0% | |
| TGGAAGAGAATGATGTAGGA+GGG | + | chr3_3:4641058-4641077 | Msa0439110:intron | 40.0% | |
| AGTGCATATCGTATTCTGAC+TGG | + | chr3_3:4641363-4641382 | Msa0439110:intron | 40.0% | |
| AGGGGAATTTATTTCGTCAC+GGG | + | chr3_3:4641496-4641515 | Msa0439110:intron | 40.0% | |
| !! | GCAGCTTGTTTGGTTCTATT+TGG | + | chr3_3:4641595-4641614 | Msa0439110:intron | 40.0% |
| CAACTTCTTCGAAATTGGCT+TGG | + | chr3_3:4641618-4641637 | Msa0439110:intron | 40.0% | |
| !! | TTGGTTTGCGACTTCTTGAT+CGG | + | chr3_3:4641740-4641759 | Msa0439110:intron | 40.0% |
| TTTGGAAGGAAAGAAACGTC+AGG | + | chr3_3:4641763-4641782 | Msa0439110:intron | 40.0% | |
| ! | AGAAACGTCAGGATTTTCGA+TGG | + | chr3_3:4641774-4641793 | Msa0439110:intron | 40.0% |
| AGTCAATGCCCAAGAGAAAA+GGG | - | chr3_3:4641911-4641930 | None:intergenic | 40.0% | |
| GTGACGCCTAATATGTGATG+TGG | + | chr3_3:4637548-4637567 | Msa0439110:intron | 45.0% | |
| GTCTTGACCTTTCACCAACA+AGG | - | chr3_3:4637600-4637619 | None:intergenic | 45.0% | |
| CAGGACAGTAAAAACAAGCG+GGG | + | chr3_3:4637943-4637962 | Msa0439110:intron | 45.0% | |
| TGATATATGGAGAGAGGGAC+CGG | + | chr3_3:4638252-4638271 | Msa0439110:intron | 45.0% | |
| TTCCAAACTCGCCTATTCAC+CGG | - | chr3_3:4638274-4638293 | None:intergenic | 45.0% | |
| ! | ATTTTGCAGGAGGTTCATGG+AGG | + | chr3_3:4638297-4638316 | Msa0439110:intron | 45.0% |
| ! | TTTTGCAGGAGGTTCATGGA+GGG | + | chr3_3:4638298-4638317 | Msa0439110:intron | 45.0% |
| AGGACTATCCCGTAGTGTTA+TGG | + | chr3_3:4638354-4638373 | Msa0439110:intron | 45.0% | |
| ATGCAGCAAACACCCCAAAA+GGG | - | chr3_3:4638632-4638651 | None:intergenic | 45.0% | |
| AATGCAGCAAACACCCCAAA+AGG | - | chr3_3:4638633-4638652 | None:intergenic | 45.0% | |
| CTGGTGAATTGTGGTTCTCA+CGG | - | chr3_3:4638865-4638884 | None:intergenic | 45.0% | |
| GTGAGAACCACAATTCACCA+GGG | + | chr3_3:4638864-4638883 | Msa0439110:CDS | 45.0% | |
| CATAGTACCCTGGTGAATTG+TGG | - | chr3_3:4638874-4638893 | None:intergenic | 45.0% | |
| !! | TGATACGGACAAAGGCATCA+GGG | - | chr3_3:4638991-4639010 | None:intergenic | 45.0% |
| !! | ATGATACGGACAAAGGCATC+AGG | - | chr3_3:4638992-4639011 | None:intergenic | 45.0% |
| GATGCCTTTGTCCGTATCAT+CGG | + | chr3_3:4638992-4639011 | Msa0439110:CDS | 45.0% | |
| GAATCCGATGATACGGACAA+AGG | - | chr3_3:4638999-4639018 | None:intergenic | 45.0% | |
| TTACTGCCTATTTCCGCAGT+CGG | + | chr3_3:4639643-4639662 | Msa0439110:intron | 45.0% | |
| GTTTGCAAAGCCGAACAAAC+GGG | - | chr3_3:4639718-4639737 | None:intergenic | 45.0% | |
| CTCCTTCTCAAGCTGTTGAA+TGG | + | chr3_3:4639964-4639983 | Msa0439110:intron | 45.0% | |
| GGTCAATGATAGACCGAACT+AGG | - | chr3_3:4640319-4640338 | None:intergenic | 45.0% | |
| ! | GAGAGTTTTGCGAGCAACTT+GGG | - | chr3_3:4640601-4640620 | None:intergenic | 45.0% |
| !! | GGACTCCACATTTTGATCCT+TGG | - | chr3_3:4640836-4640855 | None:intergenic | 45.0% |
| TTCATTCAATGGGATCCAGG+AGG | + | chr3_3:4640951-4640970 | Msa0439110:intron | 45.0% | |
| TCATTCAATGGGATCCAGGA+GGG | + | chr3_3:4640952-4640971 | Msa0439110:intron | 45.0% | |
| AACTTGGTCGAGTTCTTCAG+AGG | + | chr3_3:4641035-4641054 | Msa0439110:intron | 45.0% | |
| GAGGTGGAAGAGAATGATGT+AGG | + | chr3_3:4641054-4641073 | Msa0439110:intron | 45.0% | |
| GTGGAAGAGAATGATGTAGG+AGG | + | chr3_3:4641057-4641076 | Msa0439110:intron | 45.0% | |
| GATAAAGGAGTTCCCGTTGA+AGG | + | chr3_3:4641428-4641447 | Msa0439110:intron | 45.0% | |
| CAAACACTGAGACCTTCAAC+GGG | - | chr3_3:4641443-4641462 | None:intergenic | 45.0% | |
| GCAAACACTGAGACCTTCAA+CGG | - | chr3_3:4641444-4641463 | None:intergenic | 45.0% | |
| TGAAGGTCTCAGTGTTTGCT+TGG | + | chr3_3:4641445-4641464 | Msa0439110:intron | 45.0% | |
| ATGTGTTAGTGGTTGCGGTA+AGG | + | chr3_3:4641542-4641561 | Msa0439110:intron | 45.0% | |
| TTGCGACTTCTTGATCGGTT+TGG | + | chr3_3:4641745-4641764 | Msa0439110:intron | 45.0% | |
| !! | GACTTCTTGATCGGTTTGGA+AGG | + | chr3_3:4641749-4641768 | Msa0439110:intron | 45.0% |
| ! | TGCCAAAGCCCTTTTCTCTT+GGG | + | chr3_3:4641900-4641919 | Msa0439110:intron | 45.0% |
| GAGTCAATGCCCAAGAGAAA+AGG | - | chr3_3:4641912-4641931 | None:intergenic | 45.0% | |
| !! | TCTCTTGGGCATTGACTCTT+TGG | + | chr3_3:4641914-4641933 | Msa0439110:intron | 45.0% |
| GTCGCTAGCTGAAAAGAAGA+AGG | + | chr3_3:4642878-4642897 | Msa0439110:CDS | 45.0% | |
| !! | ACAAATAATTAAATAAAATT+AGG | - | chr3_3:4641119-4641138 | None:intergenic | 5.0% |
| GAGGGCAGGTTTATCGTTGT+AGG | + | chr3_3:4638316-4638335 | Msa0439110:intron | 50.0% | |
| CAGGTTTATCGTTGTAGGCG+TGG | + | chr3_3:4638321-4638340 | Msa0439110:intron | 50.0% | |
| TATCGTTGTAGGCGTGGTAG+AGG | + | chr3_3:4638327-4638346 | Msa0439110:intron | 50.0% | |
| CACCCCAAAAGGGCAAATTG+TGG | - | chr3_3:4638622-4638641 | None:intergenic | 50.0% | |
| CGTGAGAACCACAATTCACC+AGG | + | chr3_3:4638863-4638882 | Msa0439110:CDS | 50.0% | |
| TAACGTCCGTCATAGTACCC+TGG | - | chr3_3:4638884-4638903 | None:intergenic | 50.0% | |
| !! | GGTACTATGACGGACGTTAC+TGG | + | chr3_3:4638885-4638904 | Msa0439110:CDS | 50.0% |
| ACGGACGTTACTGGACAATG+TGG | + | chr3_3:4638894-4638913 | Msa0439110:CDS | 50.0% | |
| ACTTGACCGACTGCGGAAAT+AGG | - | chr3_3:4639652-4639671 | None:intergenic | 50.0% | |
| TATTTCCGCAGTCGGTCAAG+TGG | + | chr3_3:4639651-4639670 | Msa0439110:intron | 50.0% | |
| CTCGATCTCTTCCCCAAAGT+AGG | - | chr3_3:4640340-4640359 | None:intergenic | 50.0% | |
| GAGCAACTTGGGTGAGTCTT+AGG | - | chr3_3:4640590-4640609 | None:intergenic | 50.0% | |
| ! | GGAGAGTTTTGCGAGCAACT+TGG | - | chr3_3:4640602-4640621 | None:intergenic | 50.0% |
| ! | CCTTGGTGAACTCTGGTTTG+AGG | - | chr3_3:4640819-4640838 | None:intergenic | 50.0% |
| CCTCAAACCAGAGTTCACCA+AGG | + | chr3_3:4640816-4640835 | Msa0439110:intron | 50.0% | |
| TTGGTCGAGTTCTTCAGAGG+TGG | + | chr3_3:4641038-4641057 | Msa0439110:intron | 50.0% | |
| ! | ACGATATGCACTGACGCAGT+CGG | - | chr3_3:4641355-4641374 | None:intergenic | 50.0% |
| TGTTAGTGGTTGCGGTAAGG+AGG | + | chr3_3:4641545-4641564 | Msa0439110:intron | 50.0% | |
| ! | GTGCCAAAGCCCTTTTCTCT+TGG | + | chr3_3:4641899-4641918 | Msa0439110:intron | 50.0% |
| TGCCCAAGAGAAAAGGGCTT+TGG | - | chr3_3:4641905-4641924 | None:intergenic | 50.0% | |
| TTCCTTGGTACACCTTGAGC+CGG | + | chr3_3:4641971-4641990 | Msa0439110:intron | 50.0% | |
| CTGACTATCTTTCCGGCTCA+AGG | - | chr3_3:4641986-4642005 | None:intergenic | 50.0% | |
| ! | CTTCTTTTCAGCTAGCGACG+AGG | - | chr3_3:4642877-4642896 | None:intergenic | 50.0% |
| GACCGGTGAATAGGCGAGTT+TGG | + | chr3_3:4638269-4638288 | Msa0439110:intron | 55.0% | |
| GTAGGCGTGGTAGAGGTCTT+AGG | + | chr3_3:4638334-4638353 | Msa0439110:intron | 55.0% | |
| TTCAATGGGATCCAGGAGGG+TGG | + | chr3_3:4640955-4640974 | Msa0439110:intron | 55.0% | |
| GAGGGTGGTCGCTTGTTCAT+TGG | + | chr3_3:4640970-4640989 | Msa0439110:intron | 55.0% | |
| GGTGGTCGCTTGTTCATTGG+AGG | + | chr3_3:4640973-4640992 | Msa0439110:intron | 55.0% | |
| TTCCGGCTCAAGGTGTACCA+AGG | - | chr3_3:4641976-4641995 | None:intergenic | 55.0% | |
| GGAGAGAGGGACCGGTGAAT+AGG | + | chr3_3:4638260-4638279 | Msa0439110:intron | 60.0% | |
| ! | GTCTGCCACTTGACCGACTG+CGG | - | chr3_3:4639659-4639678 | None:intergenic | 60.0% |
| TGAACAAGCGACCACCCTCC+TGG | - | chr3_3:4640969-4640988 | None:intergenic | 60.0% | |
| ACTGACGCAGTCGGAAGCAG+AGG | - | chr3_3:4641346-4641365 | None:intergenic | 60.0% | |
| GCAGGAGGTTCATGGAGGGC+AGG | + | chr3_3:4638302-4638321 | Msa0439110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 4637448 | 4643034 | 4637448 | ID=Msa0439110;Name=Msa0439110 |
| chr3_3 | mRNA | 4637448 | 4643034 | 4637448 | ID=Msa0439110-mRNA-1;Parent=Msa0439110;Name=Msa0439110-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|3|0|148 |
| chr3_3 | exon | 4637448 | 4637477 | 4637448 | ID=Msa0439110-mRNA-1:exon:1037;Parent=Msa0439110-mRNA-1 |
| chr3_3 | exon | 4638848 | 4639069 | 4638848 | ID=Msa0439110-mRNA-1:exon:1038;Parent=Msa0439110-mRNA-1 |
| chr3_3 | exon | 4642840 | 4643034 | 4642840 | ID=Msa0439110-mRNA-1:exon:1039;Parent=Msa0439110-mRNA-1 |
| chr3_3 | CDS | 4637448 | 4637477 | 4637448 | ID=Msa0439110-mRNA-1:cds;Parent=Msa0439110-mRNA-1 |
| chr3_3 | CDS | 4638848 | 4639069 | 4638848 | ID=Msa0439110-mRNA-1:cds;Parent=Msa0439110-mRNA-1 |
| chr3_3 | CDS | 4642840 | 4643034 | 4642840 | ID=Msa0439110-mRNA-1:cds;Parent=Msa0439110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
