AlfalfaGEDB | Msa1136520

M. sativa cultivar zhongmu-4 / Msa1136520

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1136520	XP_003621316.2	93.314	703	27	3	1	698	1	688	0.0	1350

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1136520	sp\|B5X564\|CDC2C_ARATH	49.020	714	269	18	1	696	1	637	0.0	601

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1136520	G7L344	93.314	703	27	3	1	698	1	688	0.0	1350

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0174450	Msa1136520	0.806387	8.430841e-50	-8.615850e-47
Msa0474730	Msa1136520	0.802330	5.906084e-49	-8.615850e-47
Msa1007810	Msa1136520	0.809458	1.873749e-50	-8.615850e-47
Msa1049280	Msa1136520	0.817114	3.901238e-52	-8.615850e-47
Msa1099710	Msa1136520	0.904395	1.283525e-79	-8.615850e-47
Msa1136520	Msa1208950	0.808685	2.743002e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1136520	MtrunA17_Chr7g0218071	93.314	703	27	3	1	698	1	688	0.0	1350
Msa1136520	MtrunA17_Chr6g0453711	64.141	594	177	12	1	589	1	563	0.0	719
Msa1136520	MtrunA17_Chr4g0061141	51.692	650	259	16	72	701	60	674	0.0	591
Msa1136520	MtrunA17_Chr2g0286421	60.506	395	139	3	84	477	70	448	1.50e-174	509
Msa1136520	MtrunA17_Chr7g0273601	52.749	491	180	7	1	477	1	453	5.77e-172	504
Msa1136520	MtrunA17_Chr4g0066691	63.014	365	119	2	84	448	72	420	1.11e-170	500
Msa1136520	MtrunA17_Chr2g0317501	43.660	623	305	11	84	696	102	688	2.02e-169	503
Msa1136520	MtrunA17_Chr1g0191221	62.327	361	120	2	84	444	90	434	3.18e-168	495
Msa1136520	MtrunA17_Chr5g0396361	52.966	472	185	6	45	502	75	523	1.05e-164	488
Msa1136520	MtrunA17_Chr2g0324461	56.853	394	154	2	84	477	109	486	1.28e-162	484

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1136520	AT5G39420.1	49.020	714	269	18	1	696	1	637	601
Msa1136520	AT1G18670.3	48.690	649	290	12	74	705	88	710	572
Msa1136520	AT1G18670.1	48.837	645	287	12	74	701	88	706	570
Msa1136520	AT1G18670.2	52.166	577	236	10	74	635	88	639	564
Msa1136520	AT1G74330.1	46.379	718	312	18	1	688	1	675	562
Msa1136520	AT1G74330.2	46.379	718	312	18	1	688	1	675	562
Msa1136520	AT1G74330.3	48.494	664	271	16	1	635	1	622	557
Msa1136520	AT3G01085.3	44.687	734	270	22	1	701	1	631	548
Msa1136520	AT3G01085.1	44.672	732	269	22	1	699	1	629	545
Msa1136520	AT3G01085.2	44.672	732	269	22	1	699	1	629	545

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Find 174 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATGAGGTGTTAGGT+TGG	0.569982	7_4:-5113247	Msa1136520:CDS
AAAATCGGGATGACGCGAAC+AGG	0.418499	7_4:-5114974	Msa1136520:intron
AACATCAGGAAGGCAAAGAC+GGG	0.563580	7_4:-5114309	Msa1136520:CDS
AACCTTGACACCTCTCCTCA+AGG	0.529197	7_4:+5115461	None:intergenic
AACGAACTATGGAGTTACAG+TGG	0.678587	7_4:-5115956	Msa1136520:CDS
AACGCTCGTAAATGCGATGA+TGG	0.507078	7_4:-5113967	Msa1136520:CDS
AACTCCAAGAAAGCTCTGAC+CGG	0.512262	7_4:-5117986	Msa1136520:CDS
AAGAAACTATTTGTATCTAT+AGG	0.478525	7_4:-5113169	Msa1136520:CDS
AAGAAGCAAAATCAGTGCAA+TGG	0.554675	7_4:-5113731	Msa1136520:CDS
AAGAATACCTCTTTCAAAGC+TGG	0.440749	7_4:+5114248	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACCCATTTAGATTAACT+CGG	+	chr7_4:5113216-5113235	None:intergenic	30.0%
AAAAAGGTGATTTGAATGTG+AGG	-	chr7_4:5113435-5113454	Msa1136520:intron	30.0%
ACACAACTATTTCAAACCTA+GGG	+	chr7_4:5113648-5113667	None:intergenic	30.0%
TACACAACTATTTCAAACCT+AGG	+	chr7_4:5113649-5113668	None:intergenic	30.0%
ATGAGAATTATGGTCAAATG+CGG	-	chr7_4:5113867-5113886	Msa1136520:CDS	30.0%
ATAGAAAACAATCAAGGATG+AGG	-	chr7_4:5113986-5114005	Msa1136520:CDS	30.0%
TAGAAAACAATCAAGGATGA+GGG	-	chr7_4:5113987-5114006	Msa1136520:CDS	30.0%
ATCTACTAAGAGATGAAACT+TGG	+	chr7_4:5114165-5114184	None:intergenic	30.0%
TATGCTATAAAGGGTCTAAA+GGG	+	chr7_4:5114278-5114297	None:intergenic	30.0%
AATTTCACATTCAGTAAGCT+AGG	-	chr7_4:5114350-5114369	Msa1136520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	5113166	5118081	5113166	ID=Msa1136520;Name=Msa1136520
chr7_4	mRNA	5113166	5118081	5113166	ID=Msa1136520-mRNA-1;Parent=Msa1136520;Name=Msa1136520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=61\|0.75\|0.66\|0.88\|1\|1\|9\|0\|707
chr7_4	exon	5113166	5113327	5113166	ID=Msa1136520-mRNA-1:exon:1359;Parent=Msa1136520-mRNA-1
chr7_4	exon	5113504	5114010	5113504	ID=Msa1136520-mRNA-1:exon:1358;Parent=Msa1136520-mRNA-1
chr7_4	exon	5114256	5114370	5114256	ID=Msa1136520-mRNA-1:exon:1357;Parent=Msa1136520-mRNA-1
chr7_4	exon	5114975	5115072	5114975	ID=Msa1136520-mRNA-1:exon:1356;Parent=Msa1136520-mRNA-1
chr7_4	exon	5115369	5115599	5115369	ID=Msa1136520-mRNA-1:exon:1355;Parent=Msa1136520-mRNA-1
chr7_4	exon	5115885	5116202	5115885	ID=Msa1136520-mRNA-1:exon:1354;Parent=Msa1136520-mRNA-1
chr7_4	exon	5116352	5116636	5116352	ID=Msa1136520-mRNA-1:exon:1353;Parent=Msa1136520-mRNA-1
chr7_4	exon	5117213	5117257	5117213	ID=Msa1136520-mRNA-1:exon:1352;Parent=Msa1136520-mRNA-1
chr7_4	exon	5117658	5118081	5117658	ID=Msa1136520-mRNA-1:exon:1351;Parent=Msa1136520-mRNA-1
chr7_4	five_prime_UTR	5118021	5118081	5118021	ID=Msa1136520-mRNA-1:five_prime_utr;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5117658	5118020	5117658	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5117213	5117257	5117213	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5116352	5116636	5116352	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5115885	5116202	5115885	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5115369	5115599	5115369	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5114975	5115072	5114975	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5114256	5114370	5114256	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5113504	5114010	5113504	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1
chr7_4	CDS	5113166	5113327	5113166	ID=Msa1136520-mRNA-1:cds;Parent=Msa1136520-mRNA-1

Gene Sequence

>Msa1136520

ATGGGTTGTGTGAACTCCAAGAAAGCTCTGACCGGAGAAAGCAATACGCTTTCTCCGGTTGGACCTTACGTTCATTCGAGTTCTTCTCGAAAAAGGAGCAATGGTTCAGGTAGAAGCATGGTGGTGGAGGCTTCTGCTCATTCTTCTAGAGGACAACATTCTGGTGTTGTGACACAACAACCGGTTGAAACGAAACCCGAGGAGTGGAAAAAAGGTGATTTGAATGTGAGGATTGGTTCACATAGGTTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTGTTGCTGGTGAAGCCATTCATGGTTTGGTCCCTCTCAAAACTGACGCTTTTGAGAAATTAGATAAGAAAACAATCAAGGATGAGGGGGTAGCAAATTGTGGACAAATGCAGGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGTGAAGTCGAGACAGGGAGGATGGTTGCCTTAAAGAAGGTGCGGTTGGACACACTTCAACACGAGAGCATTAGGTTCATGGCGCGGGAGATAATAATCCTTCGCACACTTGATCACCCGAATGTCATGAAATTAGACGGTATAATCACTTCACAACTGTCAAACAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCTTATTATCTAACCCTGATGTCAAGTTCACAGACTCACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGACTCGAGCACTTTCACCTACGAGGTATCATGCATCGAGACATCAAAGTATCAAATATATTAGTTAACAATGAAGGCATTCTCAAGATAGGGGACTTTGGATTAGCAAATACTGTTAGCCCAAATAGCAAGCACCCTTTAACAAGTCGCGTAGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCAACGAACTATGGAGTTACAGTGGATCTGTGGAGCGTAGGGTGTGTGTTTGCTGAACTTTTTATGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTGCACAAAATATTTAAGCTTTGCGGATCTCCACCTGATGAGTTTTGGAAAAAGAATAAGCTTCCGCTTGCAACAATGTTTAAGCCTCAGATTAGTTACGAAAGCTCCCTTGAGGAGAGGTGTCAAGGTTTTCTTCCTGGAACTGCTGTGAGCCTACTTCAGACCTTACTCTCCGTTGATCCTTCCAAACGTGGTACTGCCTCCTCTGCACTTATGTCCGAGTATTTCAACACTGCGCCATATGCTTGTAACCCATCACTCCTTCCAAAGTATGTACCAAGCAAAGAAATGGATGCTAAAAATCGGGATGACGCGAACAGGAAAAAGAACGGAGGTAAAGTGCGAGAGCGCGAGGCTGTAACATCAGGAAGGCAAAGACGGGTCCATAAAGCTCTTCAGGATCCTAACAGTGCCGGCAAACCAGCTTTGAAAGAGGAAATGCAGAATATTTCTCAAAACGCTCGTAAATGCGATGATGGTAAAGCACATCATACAAAAGGAAAAGTAGGACCTGTGCAGAAAGAGCAACAAAAACATCTGTTTGATTCAAAATCAGATCAGGCTGCACAAAAGTCAAATGGTTACAATGGCTATAGTGGATACTCGGGACCGGCACCAGTCTCAGGATCTAGTGGCTTTAAATGGGCGAAAAGTAGAAAACCAGATGCTTCGTCCATTTTATCAGATGGATCAAGAAGCAAAATCAGTGCAATGGATCCAACTTTTGCGAAAGGCACATACGATTTAACGAAACACGGGATGGAAGTTTCGGAAAGAAGACATAATTACAACACAAGCCATGACGATGAGCCTTCCAAGCGTGTAGTAAAAAAGCAGCAGGGTCGTAATGTAGAATCATTTGATGTATCTGATATATACCATTCCAATTACTTCATGGATTTTGATCTCACAGACAAACCAGATGCTCAAATGAATCCACAGGACCACGGAAATCATGGTGAACCTGTGGAATCAGTACCAACTATGATCCAAACAAATAAAAACGATGAGGTGTTAGGTTGGAACGAAAACAAAGTGCGGCGGCAATCTTGTCGTAAATCAAGGCTGGGAATAGGTGAAGAAACTATTTGTATCTATAGGTGA

Protein sequence

>Msa1136520

MGCVNSKKALTGESNTLSPVGPYVHSSSSRKRSNGSGRSMVVEASAHSSRGQHSGVVTQQPVETKPEEWKKGDLNVRIGSHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDAFEKLDKKTIKDEGVANCGQMQVGQGTYSSVFQAREVETGRMVALKKVRLDTLQHESIRFMAREIIILRTLDHPNVMKLDGIITSQLSNSIYLVFEYMEHDLAGLLSNPDVKFTDSQIKCYMRQLLSGLEHFHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTVSPNSKHPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSVGCVFAELFMGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKNKLPLATMFKPQISYESSLEERCQGFLPGTAVSLLQTLLSVDPSKRGTASSALMSEYFNTAPYACNPSLLPKYVPSKEMDAKNRDDANRKKNGGKVREREAVTSGRQRRVHKALQDPNSAGKPALKEEMQNISQNARKCDDGKAHHTKGKVGPVQKEQQKHLFDSKSDQAAQKSNGYNGYSGYSGPAPVSGSSGFKWAKSRKPDASSILSDGSRSKISAMDPTFAKGTYDLTKHGMEVSERRHNYNTSHDDEPSKRVVKKQQGRNVESFDVSDIYHSNYFMDFDLTDKPDAQMNPQDHGNHGEPVESVPTMIQTNKNDEVLGWNENKVRRQSCRKSRLGIGEETICIYR*