AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474730 MtrunA17_Chr3g0131731 93.333 465 10 2 1 445 1 464 0.0 888
Msa0474730 MtrunA17_Chr8g0385871 76.356 461 84 5 5 445 10 465 0.0 716
Msa0474730 MtrunA17_Chr7g0221551 68.683 463 116 4 1 445 9 460 0.0 660
Msa0474730 MtrunA17_Chr3g0094811 59.318 440 156 4 24 445 23 457 0.0 566
Msa0474730 MtrunA17_Chr2g0304931 56.502 446 171 5 15 442 22 462 0.0 517
Msa0474730 MtrunA17_Chr1g0204191 47.936 436 175 8 27 442 87 490 1.80e-138 406
Msa0474730 MtrunA17_Chr3g0126051 44.671 441 211 7 30 444 32 465 2.30e-136 400
Msa0474730 MtrunA17_Chr3g0126031 44.749 438 209 8 30 442 27 456 1.10e-132 390
Msa0474730 MtrunA17_Chr5g0431301 45.227 440 208 9 30 442 28 461 1.61e-132 390
Msa0474730 MtrunA17_Chr7g0219051 41.164 481 231 10 3 445 1 467 6.51e-116 347
Msa0474730 MtrunA17_Chr3g0118851 45.116 430 198 11 29 438 75 486 6.70e-116 348
Msa0474730 MtrunA17_Chr3g0118841 44.755 429 200 12 29 438 76 486 1.59e-113 342
Msa0474730 MtrunA17_Chr1g0199991 38.528 462 243 11 9 442 8 456 5.93e-111 334
Msa0474730 MtrunA17_Chr4g0020241 42.227 431 216 10 30 442 72 487 7.49e-111 335
Msa0474730 MtrunA17_Chr3g0090331 42.593 432 215 12 30 442 73 490 1.89e-109 332
Msa0474730 MtrunA17_Chr3g0118881 42.308 442 209 13 29 442 75 498 6.04e-109 331
Msa0474730 MtrunA17_Chr2g0309521 37.849 465 251 10 5 444 13 464 2.14e-105 321
Msa0474730 MtrunA17_Chr2g0309511 38.495 465 248 11 5 444 13 464 1.67e-104 318
Msa0474730 MtrunA17_Chr1g0199971 39.394 462 239 14 9 442 8 456 5.08e-104 317
Msa0474730 MtrunA17_Chr3g0118831 41.280 453 199 11 9 442 55 459 2.46e-102 312
Msa0474730 MtrunA17_Chr4g0068841 40.263 457 215 13 29 442 36 477 4.13e-102 313
Msa0474730 MtrunA17_Chr1g0153881 40.509 432 220 11 30 444 88 499 4.85e-102 313
Msa0474730 MtrunA17_Chr3g0118891 41.492 429 182 12 29 438 75 453 1.09e-101 311
Msa0474730 MtrunA17_Chr4g0038311 39.326 445 226 14 30 443 33 464 2.54e-101 310
Msa0474730 MtrunA17_Chr2g0309541 38.761 436 229 10 35 444 42 465 3.07e-101 310
Msa0474730 MtrunA17_Chr1g0153941 38.293 457 224 10 29 444 75 514 3.22e-100 309
Msa0474730 MtrunA17_Chr4g0047861 38.667 450 229 10 29 444 51 487 1.12e-98 304
Msa0474730 MtrunA17_Chr2g0281621 38.166 469 246 11 6 442 9 465 5.56e-98 301
Msa0474730 MtrunA17_Chr1g0165811 52.768 271 122 4 4 274 3 267 4.60e-97 292
Msa0474730 MtrunA17_Chr3g0118861 39.954 438 191 13 28 438 72 464 1.12e-95 296
Msa0474730 MtrunA17_Chr2g0318911 37.204 465 244 14 3 438 14 459 1.41e-94 293
Msa0474730 MtrunA17_Chr4g0068861 36.496 411 205 12 28 397 81 476 1.11e-81 259
Msa0474730 MtrunA17_Chr2g0281641 37.150 393 205 10 84 444 7 389 5.70e-81 255
Msa0474730 MtrunA17_Chr1g0153931 55.914 186 76 3 29 209 73 257 7.57e-67 214
Msa0474730 MtrunA17_Chr8g0338461 31.214 519 255 17 1 441 1 495 8.29e-64 213
Msa0474730 MtrunA17_Chr1g0165821 61.635 159 54 2 285 443 28 179 1.09e-63 203
Msa0474730 MtrunA17_Chr4g0009701 29.581 453 264 14 27 441 35 470 9.11e-59 199
Msa0474730 MtrunA17_Chr7g0234051 30.709 508 267 18 3 441 4 495 6.59e-58 198
Msa0474730 MtrunA17_Chr4g0009651 28.414 454 268 14 27 441 35 470 3.63e-57 195
Msa0474730 MtrunA17_Chr4g0009661 29.295 454 264 15 27 441 35 470 3.99e-57 195
Msa0474730 MtrunA17_Chr2g0285371 28.696 460 276 13 21 441 23 469 2.14e-55 191
Msa0474730 MtrunA17_Chr4g0009681 28.908 467 278 14 13 441 17 467 6.38e-55 189
Msa0474730 MtrunA17_Chr4g0009671 29.748 437 254 13 42 441 15 435 2.16e-54 187
Msa0474730 MtrunA17_Chr7g0249431 31.809 481 247 18 32 441 28 498 4.69e-54 187
Msa0474730 MtrunA17_Chr7g0229651 44.059 202 93 2 209 390 1 202 2.06e-53 177
Msa0474730 MtrunA17_Chr4g0009711 27.696 473 286 15 7 441 16 470 5.74e-53 184
Msa0474730 MtrunA17_Chr2g0285351 28.753 473 279 15 9 441 15 469 1.29e-51 181
Msa0474730 MtrunA17_Chr2g0285381 28.166 458 274 13 21 441 26 465 1.63e-50 177
Msa0474730 MtrunA17_Chr3g0133011 28.195 493 276 13 9 441 22 496 6.99e-50 176
Msa0474730 MtrunA17_Chr4g0009641 27.682 466 271 14 7 441 16 446 1.70e-49 174
Msa0474730 MtrunA17_Chr4g0028271 31.527 406 252 14 48 438 99 493 3.70e-49 175
Msa0474730 MtrunA17_Chr2g0327401 29.024 410 260 14 48 439 102 498 1.41e-48 173
Msa0474730 MtrunA17_Chr1g0171411 29.176 425 246 14 44 438 81 480 2.56e-48 172
Msa0474730 MtrunA17_Chr4g0028241 30.806 422 238 16 49 439 92 490 2.87e-48 172
Msa0474730 MtrunA17_Chr1g0199171 29.854 412 251 15 48 438 92 486 1.73e-47 170
Msa0474730 MtrunA17_Chr7g0234041 30.105 475 224 18 3 400 1 444 6.03e-47 168
Msa0474730 MtrunA17_Chr4g0028281 29.705 441 265 16 19 439 77 492 2.81e-46 167
Msa0474730 MtrunA17_Chr4g0028261 30.260 423 260 16 37 439 109 516 7.79e-46 166
Msa0474730 MtrunA17_Chr4g0009721 26.786 448 232 15 29 441 33 419 5.07e-38 142
Msa0474730 MtrunA17_Chr2g0327381 25.778 450 268 16 48 439 96 537 1.21e-37 144
Msa0474730 MtrunA17_Chr3g0093971 25.172 437 281 12 32 436 27 449 2.11e-37 142
Msa0474730 MtrunA17_Chr2g0327371 25.778 450 253 15 49 439 86 513 2.79e-37 142
Msa0474730 MtrunA17_Chr5g0447441 27.314 443 288 16 9 436 9 432 1.21e-36 139
Msa0474730 MtrunA17_Chr4g0044051 27.419 434 290 15 17 436 14 436 1.50e-34 134
Msa0474730 MtrunA17_Chr7g0229631 65.909 88 28 2 30 117 32 117 2.52e-33 122
Msa0474730 MtrunA17_Chr4g0027731 26.636 428 266 12 49 437 36 454 1.33e-26 111
Msa0474730 MtrunA17_Chr7g0229611 64.865 74 24 2 31 104 25 96 2.78e-26 102
Msa0474730 MtrunA17_Chr7g0229621 64.000 75 25 2 30 104 24 96 6.79e-26 101
Msa0474730 MtrunA17_Chr1g0153921 31.250 240 121 10 225 444 3 218 9.61e-26 104
Msa0474730 MtrunA17_Chr2g0279371 32.787 183 98 5 29 204 25 189 1.52e-24 100
Msa0474730 MtrunA17_Chr7g0264221 48.889 90 44 2 357 445 13 101 1.97e-20 86.3
Msa0474730 MtrunA17_Chr2g0320571 26.995 426 254 14 49 425 36 453 8.79e-18 85.5
Msa0474730 MtrunA17_Chr4g0006541 39.506 81 46 1 186 266 7 84 3.07e-14 68.6
Msa0474730 MtrunA17_Chr2g0281631 51.786 56 26 1 29 84 43 97 6.97e-13 65.5
Msa0474730 MtrunA17_Chr7g0229641 61.765 34 13 0 161 194 45 78 8.28e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474730 AT1G28110.1 75.229 436 88 3 28 445 28 461 0.0 689
Msa0474730 AT1G28110.2 75.229 436 88 3 28 445 28 461 0.0 689
Msa0474730 AT2G33530.1 72.210 439 100 3 27 445 29 465 0.0 671
Msa0474730 AT1G43780.1 48.409 440 197 8 30 443 36 471 1.79e-141 414
Msa0474730 AT2G12480.4 45.740 446 222 9 3 442 2 433 1.30e-135 397
Msa0474730 AT5G42240.1 47.273 440 199 9 30 442 31 464 8.73e-135 396
Msa0474730 AT2G12480.1 45.516 446 221 9 3 442 2 431 1.95e-134 394
Msa0474730 AT2G12480.3 44.421 466 223 10 3 442 2 457 4.81e-134 394
Msa0474730 AT5G42230.1 44.301 465 229 9 3 442 1 460 7.84e-134 394
Msa0474730 AT5G42230.2 44.301 465 229 9 3 442 1 460 7.84e-134 394
Msa0474730 AT2G12480.2 45.414 447 221 10 3 442 2 432 1.63e-132 389
Msa0474730 AT4G30610.1 39.875 479 240 11 1 445 1 465 2.27e-114 344
Msa0474730 AT2G24010.1 42.404 441 214 10 30 445 29 454 4.42e-114 343
Msa0474730 AT3G02110.1 41.886 456 214 11 26 444 32 473 7.15e-113 340
Msa0474730 AT2G35780.1 40.045 447 227 11 22 442 20 451 1.27e-111 336
Msa0474730 AT3G07990.1 41.136 440 218 10 30 442 32 457 3.16e-111 335
Msa0474730 AT2G24000.1 41.020 451 216 13 30 445 29 464 5.38e-109 330
Msa0474730 AT2G24010.2 40.789 456 215 11 30 445 29 469 7.21e-109 330
Msa0474730 AT2G05850.1 38.864 440 229 10 30 444 62 486 8.13e-108 328
Msa0474730 AT2G35770.1 39.908 436 226 10 30 442 36 458 1.54e-107 326
Msa0474730 AT3G17180.1 40.088 454 220 8 28 442 35 475 1.41e-104 319
Msa0474730 AT1G61130.1 39.167 480 233 16 1 442 2 460 1.10e-103 316
Msa0474730 AT5G08260.1 39.309 463 230 13 19 442 26 476 3.27e-103 316
Msa0474730 AT2G24010.3 38.622 479 214 12 32 445 2 465 7.74e-103 314
Msa0474730 AT3G63470.1 39.862 434 228 10 30 444 80 499 3.58e-101 311
Msa0474730 AT4G30810.1 36.559 465 245 13 10 441 14 461 7.44e-101 310
Msa0474730 AT3G52000.1 38.991 436 229 11 30 444 62 481 4.19e-99 305
Msa0474730 AT4G15100.1 37.006 481 245 13 6 441 13 480 4.62e-98 303
Msa0474730 AT3G52010.1 38.375 443 236 12 25 444 58 486 1.20e-97 301
Msa0474730 AT5G23210.1 36.709 474 231 13 22 442 38 495 2.86e-97 301
Msa0474730 AT1G11080.2 38.546 454 225 12 30 442 49 489 1.47e-95 296
Msa0474730 AT1G11080.1 38.546 454 225 12 30 442 49 489 1.86e-95 296
Msa0474730 AT3G52020.1 37.071 437 235 13 30 442 78 498 1.77e-89 281
Msa0474730 AT3G17180.2 38.313 415 204 8 28 403 35 436 1.77e-87 274
Msa0474730 AT5G23210.3 35.897 429 207 12 22 397 38 451 3.60e-83 263
Msa0474730 AT2G24010.4 38.630 365 174 9 32 356 2 356 1.68e-75 240
Msa0474730 AT5G23210.5 35.036 411 203 11 81 442 5 400 1.07e-74 239
Msa0474730 AT5G23210.2 34.889 407 201 11 85 442 8 399 1.46e-73 237
Msa0474730 AT2G22990.1 31.925 426 253 10 35 441 26 433 4.60e-68 223
Msa0474730 AT2G22980.1 31.336 434 262 14 24 441 17 430 2.86e-64 213
Msa0474730 AT3G25420.1 32.106 489 254 16 21 441 16 494 1.32e-63 213
Msa0474730 AT1G73300.1 31.481 432 264 13 26 441 26 441 2.89e-63 211
Msa0474730 AT1G73300.2 31.481 432 264 13 26 441 26 441 2.89e-63 211
Msa0474730 AT2G23000.1 31.207 439 253 12 29 441 22 437 1.47e-62 209
Msa0474730 AT2G23000.2 31.207 439 253 12 29 441 22 437 1.47e-62 209
Msa0474730 AT3G10450.1 31.628 430 259 13 29 441 26 437 3.49e-62 208
Msa0474730 AT2G22920.2 31.011 445 261 16 21 441 13 435 7.72e-62 207
Msa0474730 AT3G12203.3 31.280 422 258 12 35 441 12 416 1.10e-61 206
Msa0474730 AT3G12203.1 31.280 422 258 12 35 441 33 437 1.36e-61 206
Msa0474730 AT2G22990.5 30.986 426 248 11 35 441 26 424 1.71e-61 206
Msa0474730 AT2G22970.1 31.542 428 250 13 35 441 28 433 4.71e-61 205
Msa0474730 AT2G22990.4 32.000 400 236 9 35 415 26 408 1.12e-60 203
Msa0474730 AT1G73290.1 32.102 433 258 16 26 441 25 438 1.58e-60 204
Msa0474730 AT2G22990.3 31.920 401 237 9 35 416 26 409 2.33e-60 204
Msa0474730 AT5G36180.1 30.841 428 265 12 29 441 30 441 2.66e-60 203
Msa0474730 AT4G12910.1 30.297 505 274 14 1 438 1 494 7.11e-60 203
Msa0474730 AT1G73280.1 29.847 459 286 14 1 441 1 441 9.52e-60 202
Msa0474730 AT5G23210.4 33.702 362 177 10 85 397 8 355 1.23e-59 199
Msa0474730 AT3G10450.2 31.785 409 244 13 50 441 4 394 3.36e-59 199
Msa0474730 AT2G23010.1 30.131 458 270 14 11 441 3 437 1.41e-58 198
Msa0474730 AT3G12203.2 31.818 396 238 13 61 441 1 379 4.55e-58 196
Msa0474730 AT2G23010.2 29.913 458 271 14 11 441 3 437 5.08e-58 197
Msa0474730 AT3G12220.1 32.426 441 246 16 28 441 20 435 6.17e-58 197
Msa0474730 AT1G73310.1 30.556 432 268 14 26 441 26 441 1.63e-57 196
Msa0474730 AT2G22980.2 31.296 409 246 13 24 416 17 406 1.74e-57 195
Msa0474730 AT2G22980.4 30.935 417 253 13 24 424 17 414 2.85e-57 195
Msa0474730 AT1G33540.1 30.617 454 259 14 29 441 26 464 3.01e-57 196
Msa0474730 AT3G12230.1 31.735 438 253 16 28 441 20 435 1.37e-56 193
Msa0474730 AT1G73270.2 29.698 431 266 13 29 441 30 441 1.82e-56 193
Msa0474730 AT3G12240.1 30.942 446 246 15 28 441 21 436 2.26e-56 192
Msa0474730 AT1G73270.1 29.698 431 266 13 29 441 30 441 3.03e-56 192
Msa0474730 AT1G33540.2 30.485 433 245 14 50 441 4 421 6.55e-55 188
Msa0474730 AT3G12220.2 32.289 415 234 15 50 441 15 405 1.18e-54 187
Msa0474730 AT3G10450.4 31.111 405 245 12 29 416 26 413 2.48e-54 187
Msa0474730 AT5G09640.1 30.000 450 264 13 32 441 27 465 6.72e-54 187
Msa0474730 AT2G22970.4 31.266 403 235 12 35 416 28 409 1.14e-53 185
Msa0474730 AT2G22970.3 30.733 423 250 13 35 436 28 428 3.54e-53 184
Msa0474730 AT3G45010.1 30.896 424 256 17 37 439 92 499 5.86e-53 185
Msa0474730 AT3G10450.3 31.250 384 230 12 50 416 4 370 2.33e-51 177
Msa0474730 AT5G22980.1 30.404 421 256 17 39 439 91 494 3.65e-51 181
Msa0474730 AT3G12220.3 29.930 431 218 13 28 441 20 383 3.22e-50 175
Msa0474730 AT4G12910.2 40.755 265 142 6 1 253 1 262 4.11e-50 176
Msa0474730 AT2G22920.1 30.693 404 235 15 21 400 13 395 6.42e-50 175
Msa0474730 AT3G56540.1 53.165 158 69 4 30 185 78 232 8.99e-49 167
Msa0474730 AT1G73290.3 31.378 392 234 15 26 400 25 398 1.61e-47 168
Msa0474730 AT1G73310.2 29.620 395 247 13 26 404 26 405 2.11e-46 166
Msa0474730 AT2G24000.2 32.899 307 160 10 172 445 108 401 2.31e-45 162
Msa0474730 AT2G24000.2 55.556 90 36 3 30 116 29 117 1.36e-21 96.7
Msa0474730 AT3G10410.1 30.189 424 253 17 37 437 90 493 5.02e-45 164
Msa0474730 AT2G22990.6 29.851 335 206 8 119 441 2 319 7.93e-45 159
Msa0474730 AT2G22980.3 33.123 317 186 11 24 325 17 322 3.38e-44 158
Msa0474730 AT2G22990.2 29.552 335 207 8 119 441 2 319 4.16e-44 157
Msa0474730 AT1G73290.2 33.447 293 171 11 26 304 25 307 4.08e-41 149
Msa0474730 AT2G22920.4 33.022 321 177 12 21 321 13 315 4.65e-41 149
Msa0474730 AT5G36180.5 28.655 342 221 9 108 441 13 339 4.37e-40 147
Msa0474730 AT5G36180.3 28.655 342 221 9 108 441 13 339 4.37e-40 147
Msa0474730 AT2G22970.2 33.000 300 170 9 35 316 28 314 2.71e-39 144
Msa0474730 AT1G73280.2 29.683 347 219 10 1 331 1 338 4.92e-39 145
Msa0474730 AT1G73280.4 27.326 344 223 10 108 441 13 339 1.68e-38 142
Msa0474730 AT1G73280.3 27.273 330 215 10 121 441 1 314 3.17e-35 133
Msa0474730 AT1G15000.1 28.148 405 265 16 48 441 37 426 9.97e-33 129
Msa0474730 AT5G36180.2 27.760 317 207 8 108 416 13 315 2.43e-32 125
Msa0474730 AT2G22980.5 28.105 306 194 10 119 416 2 289 7.03e-32 123
Msa0474730 AT2G27920.1 27.962 422 246 16 49 425 37 445 1.46e-29 120
Msa0474730 AT1G73310.3 26.885 305 201 9 108 404 13 303 1.69e-27 112
Msa0474730 AT5G36180.4 27.333 300 196 8 108 399 13 298 4.93e-26 108
Msa0474730 AT5G22960.1 34.302 172 88 6 37 205 25 174 3.96e-24 99.4
Msa0474730 AT2G22920.3 27.839 273 162 11 185 441 3 256 9.01e-24 100
Msa0474730 AT2G27920.2 26.632 383 225 15 86 425 4 373 1.00e-20 94.0
Msa0474730 AT2G22960.1 28.369 141 94 3 301 441 51 184 3.49e-16 77.0
Msa0474730 AT2G27920.3 25.513 341 201 14 128 425 48 378 5.45e-11 64.7

Find 99 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAACCTCTTGTTCTT+TGG 0.209048 3_3:-77664199 Msa0474730:CDS
TACTGATTATTAGATATTAA+AGG 0.220981 3_3:+77660975 None:intergenic
ACCTCTTTGTTCAAAGGTTA+TGG 0.222269 3_3:-77663055 Msa0474730:CDS
AGAGGCAAACATGCTTTATT+TGG 0.233598 3_3:-77663977 Msa0474730:CDS
CGTGCTATTCAAATCATTCT+TGG 0.238356 3_3:-77661091 Msa0474730:CDS
AGAGAAACAAAACACTTTAA+AGG 0.246230 3_3:+77664367 None:intergenic
GGTGGGTGGACTCAAGTTTA+TGG 0.246369 3_3:-77661186 Msa0474730:CDS
AACAAGATATTCAATCTTAA+AGG 0.249651 3_3:-77663322 Msa0474730:CDS
GACAAAATTGTTACCCTTCC+TGG 0.252638 3_3:-77664329 Msa0474730:CDS
ACACTTCCTACCTGTAAATT+AGG 0.255971 3_3:+77662170 None:intergenic
AACAGAGATTTGTTTCTAAC+TGG 0.261748 3_3:-77663490 Msa0474730:CDS
CAACAGTTCCTTACAGAGTA+TGG 0.262408 3_3:-77661957 Msa0474730:CDS
AATAGCACGAGTGATCTTTC+AGG 0.286784 3_3:+77661105 None:intergenic
ATACAAGGTCATTACTCTTT+AGG 0.287449 3_3:-77660714 Msa0474730:three_prime_UTR
CCTCTTGTTCTTTGGCTCAA+TGG 0.297305 3_3:-77664191 Msa0474730:CDS
CCTCTTTGTTCAAAGGTTAT+GGG 0.297500 3_3:-77663054 Msa0474730:CDS
GAGTTAAGGTCCTAATTTAC+AGG 0.298396 3_3:-77662180 Msa0474730:intron
ATTCAAGGGCTGAATTCTTT+TGG 0.305209 3_3:-77663173 Msa0474730:CDS
GGACCTGGTTGTTCTTCTCT+TGG 0.328407 3_3:-77664167 Msa0474730:CDS
GTAGGTGCATTCTCAGAAAA+TGG 0.330444 3_3:-77664143 Msa0474730:CDS
AATGAACATAGTTGGAATAA+AGG 0.338350 3_3:-77664086 Msa0474730:intron
TTAATAAGAAATTCACCATT+TGG 0.361078 3_3:+77664110 None:intergenic
AATTCACCATTTGGTCTAAA+GGG 0.361681 3_3:+77664119 None:intergenic
CAAAAGGTTGAAAACCAAAA+AGG 0.369573 3_3:+77660881 None:intergenic
CTTTGGCTCAATGGAGGACC+TGG 0.390446 3_3:-77664182 Msa0474730:CDS
TATGTCTTTAAATCCATTGT+TGG 0.393903 3_3:+77660738 None:intergenic
TCAGTTGCATATTCTAGAAC+TGG 0.396182 3_3:+77663201 None:intergenic
ACTTGTTGAACCAACGTTCC+AGG 0.404293 3_3:+77663527 None:intergenic
AAATTCACCATTTGGTCTAA+AGG 0.415048 3_3:+77664118 None:intergenic
GCACTTCATGCAAAACTTGT+TGG 0.416149 3_3:-77662624 Msa0474730:CDS
AAGGGACAATCTTGTATTCC+TGG 0.417025 3_3:-77663545 Msa0474730:CDS
AAATCTCTGTTTCTATATTG+AGG 0.417674 3_3:+77663502 None:intergenic
TTTATCAATGATCCAACAAC+AGG 0.423621 3_3:+77662208 None:intergenic
GTATAGAGAGAAAGAGTGAT+GGG 0.424629 3_3:+77664452 None:intergenic
AGGTTACAAACTACTTAAAC+AGG 0.431883 3_3:-77662662 Msa0474730:CDS
CTAAATAGTAAACACACAAA+AGG 0.432283 3_3:+77661028 None:intergenic
CCTTACAGAGTATGGTTTGA+AGG 0.432469 3_3:-77661949 Msa0474730:CDS
CTCTGTGCTGTCACAGTCCA+AGG 0.436842 3_3:-77662965 Msa0474730:intron
ATTGATAAAAGCTGGAGTTA+AGG 0.446975 3_3:-77662194 Msa0474730:CDS
GGTTGTTCTTCTCTTGGAGT+AGG 0.448812 3_3:-77664161 Msa0474730:CDS
GTGCCAACACTTCCTGTTGT+TGG 0.450313 3_3:-77662220 Msa0474730:CDS
TAAGAAAATCCAACTCCAAC+TGG 0.455371 3_3:+77663949 None:intergenic
TAAAGAAACTAGTAGATTTG+TGG 0.457756 3_3:-77663022 Msa0474730:CDS
ATGCAACTGATTTCAATTCA+AGG 0.458582 3_3:-77663188 Msa0474730:CDS
AGGGTGTGTCAGAAAACTTC+AGG 0.465152 3_3:+77661054 None:intergenic
CTCTCATTTGCCACAGTGAG+AGG 0.471001 3_3:-77661156 Msa0474730:CDS
AATGGACCCTTTAGACCAAA+TGG 0.472157 3_3:-77664125 Msa0474730:CDS
TTGTTCAAAGGTTATGGGAT+TGG 0.472351 3_3:-77663049 Msa0474730:CDS
ATAGCCTTTCAACAATTCTC+AGG 0.473579 3_3:-77664293 Msa0474730:CDS
ATCATAAGCTTTGCAAGTTG+AGG 0.475887 3_3:+77663361 None:intergenic
AGTATGGTTTGAAGGCCAAC+AGG 0.477560 3_3:-77661941 Msa0474730:intron
TTTAATGAAACTTAGGTTGG+TGG 0.479581 3_3:-77661204 Msa0474730:intron
CCTTCAAACCATACTCTGTA+AGG 0.483426 3_3:+77661949 None:intergenic
GGACTATGATGTGCTTAACT+TGG 0.489157 3_3:-77662245 Msa0474730:CDS
CTATACTCTTCTCTCTCTCA+TGG 0.491043 3_3:-77664435 Msa0474730:exon
AGTATAGAGAGAAAGAGTGA+TGG 0.493963 3_3:+77664451 None:intergenic
ATAGAGAGAAAGAGTGATGG+GGG 0.496619 3_3:+77664454 None:intergenic
GATCTTTCAGGCTGTGAGAA+AGG 0.497374 3_3:+77661117 None:intergenic
TTGGAGACACCAGTTGGAGT+TGG 0.500117 3_3:-77663958 Msa0474730:CDS
ATCTTGTATTCCTGGAACGT+TGG 0.501196 3_3:-77663537 Msa0474730:CDS
CTTGTTCTTTGGCTCAATGG+AGG 0.503534 3_3:-77664188 Msa0474730:CDS
CTAACTGGGGAAAGTTATGC+AGG 0.506489 3_3:-77663475 Msa0474730:intron
GACTCAGTGATTCCACTGAC+TGG 0.508042 3_3:-77662027 Msa0474730:CDS
TGCAACTGATTTCAATTCAA+GGG 0.511117 3_3:-77663187 Msa0474730:CDS
TCAAATCATTCTTGGAAGGA+AGG 0.513553 3_3:-77661083 Msa0474730:CDS
TAAATAGTAAACACACAAAA+GGG 0.515682 3_3:+77661029 None:intergenic
TTAATGAAACTTAGGTTGGT+GGG 0.518560 3_3:-77661203 Msa0474730:intron
ACAGAGATTTGTTTCTAACT+GGG 0.518718 3_3:-77663489 Msa0474730:CDS
CTTTATTTGGAGACACCAGT+TGG 0.520213 3_3:-77663964 Msa0474730:CDS
AGTTTCACCTCTTTGTTCAA+AGG 0.523708 3_3:-77663061 Msa0474730:CDS
GTTGGATCATTGATAAAAGC+TGG 0.524225 3_3:-77662202 Msa0474730:CDS
GTTGTTGAAGAGAATGCAAG+TGG 0.534035 3_3:-77660783 Msa0474730:three_prime_UTR
ACAGTGAATGACGAGGAAAC+AGG 0.535990 3_3:-77663898 Msa0474730:intron
TGTCAGAAAACTTCAGGTAA+AGG 0.539128 3_3:+77661060 None:intergenic
GTAAACACACAAAAGGGAAA+GGG 0.559233 3_3:+77661035 None:intergenic
TAATATCTAATAATCAGTAA+AGG 0.565877 3_3:-77660971 Msa0474730:three_prime_UTR
CAGAGATTTGTTTCTAACTG+GGG 0.566111 3_3:-77663488 Msa0474730:CDS
CCCATAACCTTTGAACAAAG+AGG 0.567501 3_3:+77663054 None:intergenic
AAGCTTCTGCTTCCAGTCAG+TGG 0.568377 3_3:+77662015 None:intergenic
GATCCAACAACAGGAAGTGT+TGG 0.570777 3_3:+77662217 None:intergenic
AGTAAACACACAAAAGGGAA+AGG 0.571309 3_3:+77661034 None:intergenic
CCATTGAGCCAAAGAACAAG+AGG 0.575023 3_3:+77664191 None:intergenic
AACTTGTTGGAGTTCGCAAG+TGG 0.581245 3_3:-77662611 Msa0474730:CDS
CTATTCAAATCATTCTTGGA+AGG 0.581750 3_3:-77661087 Msa0474730:CDS
AGTTAAGCACATCATAGTCC+AGG 0.589846 3_3:+77662248 None:intergenic
AACTCAAACTCGTTGCAGAT+CGG 0.593466 3_3:-77660674 Msa0474730:three_prime_UTR
ATGAAACTTAGGTTGGTGGG+TGG 0.608032 3_3:-77661200 Msa0474730:intron
TATAGAGAGAAAGAGTGATG+GGG 0.618775 3_3:+77664453 None:intergenic
ATATCCTGAGAATTGTTGAA+AGG 0.621984 3_3:+77664289 None:intergenic
TAGAGAGAAAGAGTGATGGG+GGG 0.638949 3_3:+77664455 None:intergenic
TAATAATCAGTAAAGGAATG+TGG 0.639265 3_3:-77660964 Msa0474730:three_prime_UTR
ACTTGTTGGAGTTCGCAAGT+GGG 0.647506 3_3:-77662610 Msa0474730:CDS
GATTTAAAGACATAAATACA+AGG 0.658495 3_3:-77660729 Msa0474730:three_prime_UTR
TCTCATGGCAATGACAACAA+TGG 0.663515 3_3:-77664420 Msa0474730:exon
AAACAGGAGAGATGTGCAAG+AGG 0.664395 3_3:-77662646 Msa0474730:CDS
ACTCCAAGAGAAGAACAACC+AGG 0.669050 3_3:+77664164 None:intergenic
ATGTGCAGCACCTCTCACTG+TGG 0.718656 3_3:+77661146 None:intergenic
TACAACAACAGTGAATGACG+AGG 0.719486 3_3:-77663905 Msa0474730:CDS
CTTGGACTGTGACAGCACAG+AGG 0.766016 3_3:+77662966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAACTTGTAATTTTATT+AGG - chr3_3:77662736-77662755 Msa0474730:intron 10.0%
!!! TATAAATTTTAATGAAACTT+AGG - chr3_3:77663917-77663936 Msa0474730:CDS 10.0%
!! TTATTAAAAATGAACATAGT+TGG - chr3_3:77661034-77661053 Msa0474730:three_prime_UTR 15.0%
!!! TCATTATTATTGAATCTTTT+TGG - chr3_3:77661256-77661275 Msa0474730:intron 15.0%
!!! TTATGTTTTTATACTTTCTT+AGG - chr3_3:77661346-77661365 Msa0474730:intron 15.0%
!! AAATTCTGTCAAATTATTAT+TGG + chr3_3:77662304-77662323 None:intergenic 15.0%
!! TAATATATATATTTACCTGT+TGG + chr3_3:77663205-77663224 None:intergenic 15.0%
!!! TACTGATTATTAGATATTAA+AGG + chr3_3:77664156-77664175 None:intergenic 15.0%
!! TAATATCTAATAATCAGTAA+AGG - chr3_3:77664157-77664176 Msa0474730:CDS 15.0%
!! TTAATAAGAAATTCACCATT+TGG + chr3_3:77661021-77661040 None:intergenic 20.0%
!!! ACATATTTTGTAATCTGAAA+CGG - chr3_3:77661539-77661558 Msa0474730:intron 20.0%
!!! TTTTTTGAATTGTTAAGCAA+GGG - chr3_3:77661565-77661584 Msa0474730:intron 20.0%
!! AAAATTTATGCATGTATTTC+AGG - chr3_3:77661734-77661753 Msa0474730:intron 20.0%
!! AACAAGATATTCAATCTTAA+AGG - chr3_3:77661806-77661825 Msa0474730:intron 20.0%
!! CTTAGAATAAAAGTTAAATG+TGG - chr3_3:77662606-77662625 Msa0474730:CDS 20.0%
!! AGAATAAATCAAAAAACAGA+AGG + chr3_3:77662993-77663012 None:intergenic 20.0%
!!! AATTTTAATGAAACTTAGGT+TGG - chr3_3:77663921-77663940 Msa0474730:CDS 20.0%
!! TAAATAGTAAACACACAAAA+GGG + chr3_3:77664102-77664121 None:intergenic 20.0%
!! GATTTAAAGACATAAATACA+AGG - chr3_3:77664399-77664418 Msa0474730:CDS 20.0%
! AGAGAAACAAAACACTTTAA+AGG + chr3_3:77660764-77660783 None:intergenic 25.0%
! AATGAACATAGTTGGAATAA+AGG - chr3_3:77661042-77661061 Msa0474730:three_prime_UTR 25.0%
!! GTTGGATTTTCTTATGTTAA+AGG - chr3_3:77661188-77661207 Msa0474730:CDS 25.0%
!! CTTTTAAATCCTACTTCTAT+TGG - chr3_3:77661308-77661327 Msa0474730:intron 25.0%
!!! CTTTTTTGAATTGTTAAGCA+AGG - chr3_3:77661564-77661583 Msa0474730:intron 25.0%
!!! AAATCTCTGTTTCTATATTG+AGG + chr3_3:77661629-77661648 None:intergenic 25.0%
!!! CATGTTTTAAAAAGCAGTAA+AGG + chr3_3:77661690-77661709 None:intergenic 25.0%
! TAAAGAAACTAGTAGATTTG+TGG - chr3_3:77662106-77662125 Msa0474730:intron 25.0%
! AAAGTTAAATGTGGTTTATG+CGG - chr3_3:77662615-77662634 Msa0474730:CDS 25.0%
!! AGAAATCACTGTCAAAATTT+TGG - chr3_3:77663250-77663269 Msa0474730:intron 25.0%
! ACTCTTTGGATCTAATAAAA+GGG - chr3_3:77663629-77663648 Msa0474730:intron 25.0%
! TTATAATCTAAACATAGCCT+CGG - chr3_3:77663684-77663703 Msa0474730:intron 25.0%
! CTAAATAGTAAACACACAAA+AGG + chr3_3:77664103-77664122 None:intergenic 25.0%
! TAATAATCAGTAAAGGAATG+TGG - chr3_3:77664164-77664183 Msa0474730:CDS 25.0%
!!! TATTACTTTTTTGGCCTTTT+TGG - chr3_3:77664233-77664252 Msa0474730:CDS 25.0%
!!! GATTCTTGTTCTAAGTTTTT+GGG - chr3_3:77664367-77664386 Msa0474730:CDS 25.0%
! TATGTCTTTAAATCCATTGT+TGG + chr3_3:77664393-77664412 None:intergenic 25.0%
ATATCCTGAGAATTGTTGAA+AGG + chr3_3:77660842-77660861 None:intergenic 30.0%
AATTCACCATTTGGTCTAAA+GGG + chr3_3:77661012-77661031 None:intergenic 30.0%
AAATTCACCATTTGGTCTAA+AGG + chr3_3:77661013-77661032 None:intergenic 30.0%
!!! AGTTATTTTTTGTGTTGCAG+AGG - chr3_3:77661133-77661152 Msa0474730:CDS 30.0%
!!! CTACTTTTTCCAATAGAAGT+AGG + chr3_3:77661320-77661339 None:intergenic 30.0%
! TGATATCAGTATGATGATGA+TGG - chr3_3:77661507-77661526 Msa0474730:intron 30.0%
!! AACAGAGATTTGTTTCTAAC+TGG - chr3_3:77661638-77661657 Msa0474730:intron 30.0%
!! ACAGAGATTTGTTTCTAACT+GGG - chr3_3:77661639-77661658 Msa0474730:intron 30.0%
TCAACAGCTAGAAAATTGTA+AGG + chr3_3:77661879-77661898 None:intergenic 30.0%
TACCAAAATTGAATTGCAGT+TGG - chr3_3:77661899-77661918 Msa0474730:intron 30.0%
ACCAAAATTGAATTGCAGTT+GGG - chr3_3:77661900-77661919 Msa0474730:intron 30.0%
! ATGCAACTGATTTCAATTCA+AGG - chr3_3:77661940-77661959 Msa0474730:intron 30.0%
! TGCAACTGATTTCAATTCAA+GGG - chr3_3:77661941-77661960 Msa0474730:intron 30.0%
TGAAATGATAGATGTATGTG+TGG - chr3_3:77662437-77662456 Msa0474730:intron 30.0%
AGGTTACAAACTACTTAAAC+AGG - chr3_3:77662466-77662485 Msa0474730:intron 30.0%
!!! AAGGTTTTAAATTGCAGTTG+TGG - chr3_3:77662567-77662586 Msa0474730:intron 30.0%
!!! GTTATTTTAGCTTAGTGAGA+AGG + chr3_3:77662723-77662742 None:intergenic 30.0%
TTTATCAATGATCCAACAAC+AGG + chr3_3:77662923-77662942 None:intergenic 30.0%
ATTGATAAAAGCTGGAGTTA+AGG - chr3_3:77662934-77662953 Msa0474730:intron 30.0%
! TATTCTGTTGCTTAAACTAG+AGG - chr3_3:77663007-77663026 Msa0474730:CDS 30.0%
! ATTCTGTTGCTTAAACTAGA+GGG - chr3_3:77663008-77663027 Msa0474730:CDS 30.0%
CAGAAGCTTAGTTCAAAAAT+TGG - chr3_3:77663127-77663146 Msa0474730:CDS 30.0%
CAAAAATTGGCTAGACAATT+AGG - chr3_3:77663140-77663159 Msa0474730:CDS 30.0%
! CTTTCTGGTCACTTATAAAA+TGG + chr3_3:77663278-77663297 None:intergenic 30.0%
CAGACAATACTTCATAAAGT+CGG + chr3_3:77663514-77663533 None:intergenic 30.0%
ATTGAGACGTCATTTAACTA+AGG + chr3_3:77663570-77663589 None:intergenic 30.0%
TTAGTTAAATGACGTCTCAA+TGG - chr3_3:77663569-77663588 Msa0474730:intron 30.0%
CACTCTTTGGATCTAATAAA+AGG - chr3_3:77663628-77663647 Msa0474730:intron 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG - chr3_3:77663643-77663662 Msa0474730:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG - chr3_3:77663644-77663663 Msa0474730:intron 30.0%
!! TTTAATGAAACTTAGGTTGG+TGG - chr3_3:77663924-77663943 Msa0474730:CDS 30.0%
!! TTAATGAAACTTAGGTTGGT+GGG - chr3_3:77663925-77663944 Msa0474730:CDS 30.0%
CTATTCAAATCATTCTTGGA+AGG - chr3_3:77664041-77664060 Msa0474730:intron 30.0%
AGAATGTCAAAAAGAAAAGC+TGG - chr3_3:77664199-77664218 Msa0474730:CDS 30.0%
CAAAAGGTTGAAAACCAAAA+AGG + chr3_3:77664250-77664269 None:intergenic 30.0%
CACAAAAACTCAAGTACAAA+AGG + chr3_3:77664266-77664285 None:intergenic 30.0%
!! GGATTCTTGTTCTAAGTTTT+TGG - chr3_3:77664366-77664385 Msa0474730:CDS 30.0%
ATACAAGGTCATTACTCTTT+AGG - chr3_3:77664414-77664433 Msa0474730:CDS 30.0%
!! CCTATTTAAAAAGTGTCGAA+CGG + chr3_3:77664490-77664509 None:intergenic 30.0%
TATAGAGAGAAAGAGTGATG+GGG + chr3_3:77660678-77660697 None:intergenic 35.0%
GTATAGAGAGAAAGAGTGAT+GGG + chr3_3:77660679-77660698 None:intergenic 35.0%
AGTATAGAGAGAAAGAGTGA+TGG + chr3_3:77660680-77660699 None:intergenic 35.0%
! TGTTGAAAGGCTATGTTTTG+AGG + chr3_3:77660829-77660848 None:intergenic 35.0%
ATAGCCTTTCAACAATTCTC+AGG - chr3_3:77660835-77660854 Msa0474730:three_prime_UTR 35.0%
!!! AGAACAAGAGGTTTTGAAGA+TGG + chr3_3:77660928-77660947 None:intergenic 35.0%
CTTCAAAACCTCTTGTTCTT+TGG - chr3_3:77660929-77660948 Msa0474730:three_prime_UTR 35.0%
TCAATGAATGCATGTCATTG+TGG + chr3_3:77661095-77661114 None:intergenic 35.0%
! AGAGGCAAACATGCTTTATT+TGG - chr3_3:77661151-77661170 Msa0474730:CDS 35.0%
TAAGAAAATCCAACTCCAAC+TGG + chr3_3:77661182-77661201 None:intergenic 35.0%
!! CAGAGATTTGTTTCTAACTG+GGG - chr3_3:77661640-77661659 Msa0474730:intron 35.0%
ATCATAAGCTTTGCAAGTTG+AGG + chr3_3:77661770-77661789 None:intergenic 35.0%
CCAAAATTGAATTGCAGTTG+GGG - chr3_3:77661901-77661920 Msa0474730:intron 35.0%
!! TCAGTTGCATATTCTAGAAC+TGG + chr3_3:77661930-77661949 None:intergenic 35.0%
! ATTCAAGGGCTGAATTCTTT+TGG - chr3_3:77661955-77661974 Msa0474730:CDS 35.0%
AGTTTCACCTCTTTGTTCAA+AGG - chr3_3:77662067-77662086 Msa0474730:intron 35.0%
ACCTCTTTGTTCAAAGGTTA+TGG - chr3_3:77662073-77662092 Msa0474730:intron 35.0%
CCTCTTTGTTCAAAGGTTAT+GGG - chr3_3:77662074-77662093 Msa0474730:intron 35.0%
TTGTTCAAAGGTTATGGGAT+TGG - chr3_3:77662079-77662098 Msa0474730:intron 35.0%
GCTTCAAAGACTATAAGTGA+TGG + chr3_3:77662255-77662274 None:intergenic 35.0%
! CATTTCATTTGCTTGCTACA+AGG + chr3_3:77662424-77662443 None:intergenic 35.0%
AAGGTTATAAAACAGGTCCA+CGG + chr3_3:77662697-77662716 None:intergenic 35.0%
AAGGACCAAGGTTATAAAAC+AGG + chr3_3:77662704-77662723 None:intergenic 35.0%
AAAGATCATCAGTGATCACA+TGG + chr3_3:77662840-77662859 None:intergenic 35.0%
! CTGATGATCTTTGTCTGTTT+TGG - chr3_3:77662848-77662867 Msa0474730:intron 35.0%
GTTGGATCATTGATAAAAGC+TGG - chr3_3:77662926-77662945 Msa0474730:intron 35.0%
GAGTTAAGGTCCTAATTTAC+AGG - chr3_3:77662948-77662967 Msa0474730:intron 35.0%
TAAGGTCCTAATTTACAGGT+AGG - chr3_3:77662952-77662971 Msa0474730:intron 35.0%
ACACTTCCTACCTGTAAATT+AGG + chr3_3:77662961-77662980 None:intergenic 35.0%
GTGCATTATTATTGCTACAG+TGG - chr3_3:77663071-77663090 Msa0474730:CDS 35.0%
AAAAGGATCTTTCCACTTTG+GGG + chr3_3:77663340-77663359 None:intergenic 35.0%
GAAAAGGATCTTTCCACTTT+GGG + chr3_3:77663341-77663360 None:intergenic 35.0%
AAGACTAAAGCCAATGGAAA+AGG + chr3_3:77663357-77663376 None:intergenic 35.0%
TTGACAAAGACTAAAGCCAA+TGG + chr3_3:77663363-77663382 None:intergenic 35.0%
!! TGGCTTTAGTCTTTGTCAAT+TGG - chr3_3:77663364-77663383 Msa0474730:CDS 35.0%
! GGCTTTAGTCTTTGTCAATT+GGG - chr3_3:77663365-77663384 Msa0474730:CDS 35.0%
TAACTAAGGATAAAACTGCG+AGG + chr3_3:77663556-77663575 None:intergenic 35.0%
!! CCAAAGAGTGCTTACATATA+GGG + chr3_3:77663618-77663637 None:intergenic 35.0%
!! TCCAAAGAGTGCTTACATAT+AGG + chr3_3:77663619-77663638 None:intergenic 35.0%
!! ATGTGGGACTTTTTAGTGTA+CGG - chr3_3:77663717-77663736 Msa0474730:intron 35.0%
CAATGGTTAAGGTCGTAAAA+TGG + chr3_3:77663831-77663850 None:intergenic 35.0%
TAAAAGTGGTGCAATGGTTA+AGG + chr3_3:77663842-77663861 None:intergenic 35.0%
CGTACAATACCTCATAAAAG+TGG + chr3_3:77663856-77663875 None:intergenic 35.0%
!! TTATGAGGTATTGTACGCTT+AGG - chr3_3:77663859-77663878 Msa0474730:intron 35.0%
! CGTGCTATTCAAATCATTCT+TGG - chr3_3:77664037-77664056 Msa0474730:intron 35.0%
TCAAATCATTCTTGGAAGGA+AGG - chr3_3:77664045-77664064 Msa0474730:intron 35.0%
TGTCAGAAAACTTCAGGTAA+AGG + chr3_3:77664071-77664090 None:intergenic 35.0%
GTAAACACACAAAAGGGAAA+GGG + chr3_3:77664096-77664115 None:intergenic 35.0%
AGTAAACACACAAAAGGGAA+AGG + chr3_3:77664097-77664116 None:intergenic 35.0%
!! CCGTTCGACACTTTTTAAAT+AGG - chr3_3:77664487-77664506 Msa0474730:five_prime_UTR 35.0%
ATAGAGAGAAAGAGTGATGG+GGG + chr3_3:77660677-77660696 None:intergenic 40.0%
CTATACTCTTCTCTCTCTCA+TGG - chr3_3:77660693-77660712 Msa0474730:three_prime_UTR 40.0%
TCTCATGGCAATGACAACAA+TGG - chr3_3:77660708-77660727 Msa0474730:three_prime_UTR 40.0%
GACAAAATTGTTACCCTTCC+TGG - chr3_3:77660799-77660818 Msa0474730:three_prime_UTR 40.0%
GTAGGTGCATTCTCAGAAAA+TGG - chr3_3:77660985-77661004 Msa0474730:three_prime_UTR 40.0%
AATGGACCCTTTAGACCAAA+TGG - chr3_3:77661003-77661022 Msa0474730:three_prime_UTR 40.0%
! CTTTATTTGGAGACACCAGT+TGG - chr3_3:77661164-77661183 Msa0474730:CDS 40.0%
TACAACAACAGTGAATGACG+AGG - chr3_3:77661223-77661242 Msa0474730:intron 40.0%
AAGGGACAATCTTGTATTCC+TGG - chr3_3:77661583-77661602 Msa0474730:intron 40.0%
ATCTTGTATTCCTGGAACGT+TGG - chr3_3:77661591-77661610 Msa0474730:intron 40.0%
! CCCCAACTGCAATTCAATTT+TGG + chr3_3:77661904-77661923 None:intergenic 40.0%
! GCTGAATTCTTTTGGTCACA+TGG - chr3_3:77661963-77661982 Msa0474730:CDS 40.0%
CCCATAACCTTTGAACAAAG+AGG + chr3_3:77662077-77662096 None:intergenic 40.0%
AGGTTGAGGAGAAATAACCT+TGG + chr3_3:77662183-77662202 None:intergenic 40.0%
! GGAAAAGCATGAGAAAGGAA+AGG + chr3_3:77662234-77662253 None:intergenic 40.0%
! GTGATGGAAAAGCATGAGAA+AGG + chr3_3:77662239-77662258 None:intergenic 40.0%
AGATGTATGTGTGGATGACA+AGG - chr3_3:77662446-77662465 Msa0474730:intron 40.0%
GCACTTCATGCAAAACTTGT+TGG - chr3_3:77662504-77662523 Msa0474730:intron 40.0%
CAGCAAGTAAGTCATTCTCA+AGG - chr3_3:77662548-77662567 Msa0474730:intron 40.0%
! GTGGACCTGTTTTATAACCT+TGG - chr3_3:77662696-77662715 Msa0474730:intron 40.0%
GACCAGTGAAGCTAAATCAT+TGG + chr3_3:77662762-77662781 None:intergenic 40.0%
TCATCAGTGATCACATGGAT+TGG + chr3_3:77662835-77662854 None:intergenic 40.0%
AGTTAAGCACATCATAGTCC+AGG + chr3_3:77662883-77662902 None:intergenic 40.0%
GGACTATGATGTGCTTAACT+TGG - chr3_3:77662883-77662902 Msa0474730:intron 40.0%
CAACAGTTCCTTACAGAGTA+TGG - chr3_3:77663171-77663190 Msa0474730:CDS 40.0%
CCTTCAAACCATACTCTGTA+AGG + chr3_3:77663182-77663201 None:intergenic 40.0%
CCTTACAGAGTATGGTTTGA+AGG - chr3_3:77663179-77663198 Msa0474730:CDS 40.0%
AAAGGATCTTTCCACTTTGG+GGG + chr3_3:77663339-77663358 None:intergenic 40.0%
GGAAAAGGATCTTTCCACTT+TGG + chr3_3:77663342-77663361 None:intergenic 40.0%
! GTGGAAAGATCCTTTTCCAT+TGG - chr3_3:77663344-77663363 Msa0474730:CDS 40.0%
AAGTCGGTACGAAAGATTTG+AGG + chr3_3:77663498-77663517 None:intergenic 40.0%
! AGAGTGCTTACATATAGGGA+CGG + chr3_3:77663614-77663633 None:intergenic 40.0%
CCCTATATGTAAGCACTCTT+TGG - chr3_3:77663615-77663634 Msa0474730:intron 40.0%
! GTTGAGATTAAGGTGCTACA+GGG - chr3_3:77663766-77663785 Msa0474730:intron 40.0%
! TTGAGATTAAGGTGCTACAG+GGG - chr3_3:77663767-77663786 Msa0474730:intron 40.0%
!! ACCATTGCACCACTTTTATG+AGG - chr3_3:77663844-77663863 Msa0474730:intron 40.0%
ACCTCATAAAAGTGGTGCAA+TGG + chr3_3:77663848-77663867 None:intergenic 40.0%
AATAGCACGAGTGATCTTTC+AGG + chr3_3:77664026-77664045 None:intergenic 40.0%
GTTGTTGAAGAGAATGCAAG+TGG - chr3_3:77664345-77664364 Msa0474730:CDS 40.0%
!! CTAAGTTTTTGGGCCAACAA+TGG - chr3_3:77664377-77664396 Msa0474730:CDS 40.0%
AACTCAAACTCGTTGCAGAT+CGG - chr3_3:77664454-77664473 Msa0474730:five_prime_UTR 40.0%
! TAGAGAGAAAGAGTGATGGG+GGG + chr3_3:77660676-77660695 None:intergenic 45.0%
!!! GTTTTGAGGTTGTCCAGGAA+GGG + chr3_3:77660815-77660834 None:intergenic 45.0%
!!! TGTTTTGAGGTTGTCCAGGA+AGG + chr3_3:77660816-77660835 None:intergenic 45.0%
!!! GCTATGTTTTGAGGTTGTCC+AGG + chr3_3:77660820-77660839 None:intergenic 45.0%
CCATTGAGCCAAAGAACAAG+AGG + chr3_3:77660940-77660959 None:intergenic 45.0%
! CCTCTTGTTCTTTGGCTCAA+TGG - chr3_3:77660937-77660956 Msa0474730:three_prime_UTR 45.0%
! CTTGTTCTTTGGCTCAATGG+AGG - chr3_3:77660940-77660959 Msa0474730:three_prime_UTR 45.0%
ACTCCAAGAGAAGAACAACC+AGG + chr3_3:77660967-77660986 None:intergenic 45.0%
GGTTGTTCTTCTCTTGGAGT+AGG - chr3_3:77660967-77660986 Msa0474730:three_prime_UTR 45.0%
ACAGTGAATGACGAGGAAAC+AGG - chr3_3:77661230-77661249 Msa0474730:intron 45.0%
! ACTTGTTGAACCAACGTTCC+AGG + chr3_3:77661604-77661623 None:intergenic 45.0%
CTAACTGGGGAAAGTTATGC+AGG - chr3_3:77661653-77661672 Msa0474730:intron 45.0%
AAGACACTCACTTGAGGTTG+AGG + chr3_3:77662197-77662216 None:intergenic 45.0%
GAAGAGAAGACACTCACTTG+AGG + chr3_3:77662203-77662222 None:intergenic 45.0%
AAACAGGAGAGATGTGCAAG+AGG - chr3_3:77662482-77662501 Msa0474730:intron 45.0%
!! AACTTGTTGGAGTTCGCAAG+TGG - chr3_3:77662517-77662536 Msa0474730:intron 45.0%
! ACTTGTTGGAGTTCGCAAGT+GGG - chr3_3:77662518-77662537 Msa0474730:intron 45.0%
TGTCTTCGCAACCTCAAATG+AGG + chr3_3:77662641-77662660 None:intergenic 45.0%
! CGATTTGGGCTGTGACATTA+AGG + chr3_3:77662670-77662689 None:intergenic 45.0%
TAGCTTAGTGAGAAGGACCA+AGG + chr3_3:77662716-77662735 None:intergenic 45.0%
! GGCCAATGATTTAGCTTCAC+TGG - chr3_3:77662757-77662776 Msa0474730:intron 45.0%
!!! CTGTTTTGGTAACAGTGTCC+TGG - chr3_3:77662862-77662881 Msa0474730:intron 45.0%
! GATCCAACAACAGGAAGTGT+TGG + chr3_3:77662914-77662933 None:intergenic 45.0%
AGTATGGTTTGAAGGCCAAC+AGG - chr3_3:77663187-77663206 Msa0474730:CDS 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_3:77663610-77663629 None:intergenic 45.0%
! AGGGTGCTTAGATATAGGGA+CGG - chr3_3:77663648-77663667 Msa0474730:intron 45.0%
TGCTTAGATATAGGGACGGA+GGG - chr3_3:77663652-77663671 Msa0474730:intron 45.0%
CCTCGGTTCTTACGTAATGT+GGG - chr3_3:77663701-77663720 Msa0474730:intron 45.0%
TGAGGCTGAGGTTGAGATTA+AGG - chr3_3:77663756-77663775 Msa0474730:intron 45.0%
! GGTTGAGATTAAGGTGCTAC+AGG - chr3_3:77663765-77663784 Msa0474730:intron 45.0%
AAGGTCGTAAAATGGCCTCT+AGG + chr3_3:77663823-77663842 None:intergenic 45.0%
!! ATGAAACTTAGGTTGGTGGG+TGG - chr3_3:77663928-77663947 Msa0474730:CDS 45.0%
GATCTTTCAGGCTGTGAGAA+AGG + chr3_3:77664014-77664033 None:intergenic 45.0%
AGGGTGTGTCAGAAAACTTC+AGG + chr3_3:77664077-77664096 None:intergenic 45.0%
!! AAAAAAGTAATATAAAAAAT+TGG + chr3_3:77664225-77664244 None:intergenic 5.0%
!!! AATTTTTTATATTACTTTTT+TGG - chr3_3:77664224-77664243 Msa0474730:CDS 5.0%
GGACCTGGTTGTTCTTCTCT+TGG - chr3_3:77660961-77660980 Msa0474730:three_prime_UTR 50.0%
TTGGAGACACCAGTTGGAGT+TGG - chr3_3:77661170-77661189 Msa0474730:CDS 50.0%
GGTTTATGCGGCCTCATTTG+AGG - chr3_3:77662627-77662646 Msa0474730:CDS 50.0%
AGGTCCACGGACAACGATTT+GGG + chr3_3:77662684-77662703 None:intergenic 50.0%
GTGCCAACACTTCCTGTTGT+TGG - chr3_3:77662908-77662927 Msa0474730:intron 50.0%
GACTCAGTGATTCCACTGAC+TGG - chr3_3:77663101-77663120 Msa0474730:CDS 50.0%
AAGCTTCTGCTTCCAGTCAG+TGG + chr3_3:77663116-77663135 None:intergenic 50.0%
AGTGACCAGAAAGCCTTCAG+TGG - chr3_3:77663285-77663304 Msa0474730:intron 50.0%
TGACTCCACTGAAGGCTTTC+TGG + chr3_3:77663293-77663312 None:intergenic 50.0%
AAGCCTTCAGTGGAGTCACT+AGG - chr3_3:77663295-77663314 Msa0474730:intron 50.0%
AGCCTTCAGTGGAGTCACTA+GGG - chr3_3:77663296-77663315 Msa0474730:intron 50.0%
ATCCCTAGTGACTCCACTGA+AGG + chr3_3:77663301-77663320 None:intergenic 50.0%
GACTACTCTTTCCCCCAAAG+TGG - chr3_3:77663325-77663344 Msa0474730:CDS 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_3:77663611-77663630 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG - chr3_3:77663651-77663670 Msa0474730:intron 50.0%
GCCTCGGTTCTTACGTAATG+TGG - chr3_3:77663700-77663719 Msa0474730:intron 50.0%
CCCACATTACGTAAGAACCG+AGG + chr3_3:77663704-77663723 None:intergenic 50.0%
! GTGTACGGAACACTAGTCTC+CGG - chr3_3:77663732-77663751 Msa0474730:intron 50.0%
ATCTCAACCTCAGCCTCAAC+CGG + chr3_3:77663754-77663773 None:intergenic 50.0%
! GGTGGGTGGACTCAAGTTTA+TGG - chr3_3:77663942-77663961 Msa0474730:CDS 50.0%
CTCTCATTTGCCACAGTGAG+AGG - chr3_3:77663972-77663991 Msa0474730:CDS 50.0%
! AGAGAAAGAGTGATGGGGGG+TGG + chr3_3:77660673-77660692 None:intergenic 55.0%
! CTTTGGCTCAATGGAGGACC+TGG - chr3_3:77660946-77660965 Msa0474730:three_prime_UTR 55.0%
CTTGGACTGTGACAGCACAG+AGG + chr3_3:77662165-77662184 None:intergenic 55.0%
CTCTGTGCTGTCACAGTCCA+AGG - chr3_3:77662163-77662182 Msa0474730:intron 55.0%
ACAGCCCAAATCGTTGTCCG+TGG - chr3_3:77662677-77662696 Msa0474730:intron 55.0%
CAGGTCCACGGACAACGATT+TGG + chr3_3:77662685-77662704 None:intergenic 55.0%
! GGAACACTAGTCTCCGGTTG+AGG - chr3_3:77663738-77663757 Msa0474730:intron 55.0%
AGAGCCTAAGCCACACACGA+GGG + chr3_3:77663800-77663819 None:intergenic 55.0%
TGTGGCTTAGGCTCTCCTAG+AGG - chr3_3:77663805-77663824 Msa0474730:intron 55.0%
ATGTGCAGCACCTCTCACTG+TGG + chr3_3:77663985-77664004 None:intergenic 55.0%
CTAGTCTCCGGTTGAGGCTG+AGG - chr3_3:77663744-77663763 Msa0474730:intron 60.0%
! GGGTTTTCAGCCCTCGTGTG+TGG - chr3_3:77663787-77663806 Msa0474730:intron 60.0%
TCAGCCCTCGTGTGTGGCTT+AGG - chr3_3:77663793-77663812 Msa0474730:intron 60.0%
GAGAGCCTAAGCCACACACG+AGG + chr3_3:77663801-77663820 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77660637 77664513 77660637 ID=Msa0474730;Name=Msa0474730
chr3_3 mRNA 77660637 77664513 77660637 ID=Msa0474730-mRNA-1;Parent=Msa0474730;Name=Msa0474730-mRNA-1;_AED=0.20;_eAED=0.20;_QI=75|0.87|0.77|1|1|1|9|425|445
chr3_3 exon 77660637 77661211 77660637 ID=Msa0474730-mRNA-1:exon:20843;Parent=Msa0474730-mRNA-1
chr3_3 exon 77661942 77662059 77661942 ID=Msa0474730-mRNA-1:exon:20842;Parent=Msa0474730-mRNA-1
chr3_3 exon 77662181 77662273 77662181 ID=Msa0474730-mRNA-1:exon:20841;Parent=Msa0474730-mRNA-1
chr3_3 exon 77662597 77662682 77662597 ID=Msa0474730-mRNA-1:exon:20840;Parent=Msa0474730-mRNA-1
chr3_3 exon 77662966 77663232 77662966 ID=Msa0474730-mRNA-1:exon:20839;Parent=Msa0474730-mRNA-1
chr3_3 exon 77663315 77663394 77663315 ID=Msa0474730-mRNA-1:exon:20838;Parent=Msa0474730-mRNA-1
chr3_3 exon 77663476 77663568 77663476 ID=Msa0474730-mRNA-1:exon:20837;Parent=Msa0474730-mRNA-1
chr3_3 exon 77663899 77663997 77663899 ID=Msa0474730-mRNA-1:exon:20836;Parent=Msa0474730-mRNA-1
chr3_3 exon 77664087 77664513 77664087 ID=Msa0474730-mRNA-1:exon:20835;Parent=Msa0474730-mRNA-1
chr3_3 five_prime_UTR 77664439 77664513 77664439 ID=Msa0474730-mRNA-1:five_prime_utr;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77664087 77664438 77664087 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77663899 77663997 77663899 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77663476 77663568 77663476 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77663315 77663394 77663315 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77662966 77663232 77662966 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77662597 77662682 77662597 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77662181 77662273 77662181 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77661942 77662059 77661942 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 CDS 77661062 77661211 77661062 ID=Msa0474730-mRNA-1:cds;Parent=Msa0474730-mRNA-1
chr3_3 three_prime_UTR 77660637 77661061 77660637 ID=Msa0474730-mRNA-1:three_prime_utr;Parent=Msa0474730-mRNA-1
Gene Sequence

>Msa0474730

ATGGCAATGACAACAATGGCTATGTTATTTCTTCATTTGAGTTTTTTTACCTTTAAAGTGTTTTGTTTCTCTTCTCATTCTCATGCAGACAAAATTGTTACCCTTCCTGGACAACCTCAAAACATAGCCTTTCAACAATTCTCAGGATATGTCACAGTTGATAACAAAAAACACAAGTCACTTTTTTACTATTTTGCTGAATCAGAAACTGATCCATCTTCAAAACCTCTTGTTCTTTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTAGGTGCATTCTCAGAAAATGGACCCTTTAGACCAAATGGTGAATTTCTTATTAAAAATGAACATAGTTGGAATAAAGAGGCAAACATGCTTTATTTGGAGACACCAGTTGGAGTTGGATTTTCTTATGTTAAAGGTAGTTCTGCTTATACAACAACAGTGAATGACGAGGAAACAGCAAGGGACAATCTTGTATTCCTGGAACGTTGGTTCAACAAGTTTCCTCAATATAGAAACAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAGATATTCAATCTTAAAGGCATAGCTTTGGGGAATCCAGTTCTAGAATATGCAACTGATTTCAATTCAAGGGCTGAATTCTTTTGGTCACATGGACTAATATCAGATGCAACTTACAACATGTTCACTAGAGTGTGTAATTACTCTCGTTATGTAAGTGAGTACAATAGAGACTCAGTTTCACCTCTTTGTTCAAAGGTTATGGGATTGGTGAGTAAAGAAACTAGTAGATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCTGTGCTGTCACAGTCCAAGGTTACAAACTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAACTTGTTGGAGTTCGCAAGTGGGATGTCTGCAGCAATGTCCTGGACTATGATGTGCTTAACTTGGAAGTGCCAACACTTCCTGTTGTTGGATCATTGATAAAAGCTGGAGTTAAGGTCCTAATTTACAGTGGAGATCAAGACTCAGTGATTCCACTGACTGGAAGCAGAAGCTTAGTTCAAAAATTGGCTAGACAATTAGGACTGAATACAACAGTTCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGGTGGACTCAAGTTTATGGCAATGTTCTCTCATTTGCCACAGTGAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTCGTGCTATTCAAATCATTCTTGGAAGGAAGGCCTTTACCTGAAGTTTTCTGA

Protein sequence

>Msa0474730

MAMTTMAMLFLHLSFFTFKVFCFSSHSHADKIVTLPGQPQNIAFQQFSGYVTVDNKKHKSLFYYFAESETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPVGVGFSYVKGSSAYTTTVNDEETARDNLVFLERWFNKFPQYRNRDLFLTGESYAGHYVPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDATYNMFTRVCNYSRYVSEYNRDSVSPLCSKVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDVLNLEVPTLPVVGSLIKAGVKVLIYSGDQDSVIPLTGSRSLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGNVLSFATVRGAAHEAPFSQPERSLVLFKSFLEGRPLPEVF*