AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136610 MtrunA17_Chr5g0414291 82.353 102 18 0 95 196 204 305 4.14e-54 177
Msa1136610 MtrunA17_Chr5g0414291 71.171 111 26 2 1 105 1 111 4.87e-41 143
Msa1136610 MtrunA17_Chr5g0415471 78.431 102 22 0 95 196 202 303 2.21e-52 180
Msa1136610 MtrunA17_Chr5g0415471 63.636 99 30 2 1 93 1 99 1.23e-29 115
Msa1136610 MtrunA17_Chr5g0414231 75.490 102 25 0 95 196 200 301 2.44e-52 174
Msa1136610 MtrunA17_Chr5g0414231 82.796 93 14 1 1 91 1 93 1.05e-41 146
Msa1136610 MtrunA17_Chr5g0415511 76.471 102 24 0 95 196 200 301 1.23e-51 176
Msa1136610 MtrunA17_Chr5g0415511 74.468 94 22 1 1 92 1 94 1.59e-34 129
Msa1136610 MtrunA17_Chr5g0414181 76.471 102 24 0 95 196 199 300 2.12e-50 174
Msa1136610 MtrunA17_Chr5g0414181 62.617 107 38 1 1 105 1 107 1.84e-35 131
Msa1136610 MtrunA17_Chr3g0087301 71.569 102 29 0 95 196 200 301 1.01e-46 164
Msa1136610 MtrunA17_Chr3g0087301 57.658 111 45 1 1 109 1 111 5.76e-33 124
Msa1136610 MtrunA17_Chr5g0413821 71.963 107 28 1 1 105 1 107 2.15e-45 149
Msa1136610 MtrunA17_Chr5g0413811 90.909 77 7 0 120 196 1 77 6.89e-43 152
Msa1136610 MtrunA17_Chr5g0414311 63.725 102 37 0 95 196 204 305 9.01e-42 149
Msa1136610 MtrunA17_Chr5g0414311 65.657 99 28 2 1 93 1 99 3.01e-30 116
Msa1136610 MtrunA17_Chr5g0415491 63.462 104 36 1 95 196 57 160 1.03e-40 137
Msa1136610 MtrunA17_Chr5g0414201 73.529 102 27 0 95 196 200 301 1.48e-40 146
Msa1136610 MtrunA17_Chr5g0414201 65.421 107 35 1 1 105 1 107 1.30e-36 135
Msa1136610 MtrunA17_Chr4g0071021 58.182 110 38 1 95 196 170 279 2.78e-37 134
Msa1136610 MtrunA17_Chr4g0071021 37.500 112 58 2 1 110 1 102 2.74e-14 70.5
Msa1136610 MtrunA17_Chr5g0414171 75.556 90 20 1 1 88 1 90 4.60e-36 130
Msa1136610 MtrunA17_Chr6g0468401 55.769 104 44 1 95 196 188 291 4.76e-35 126
Msa1136610 MtrunA17_Chr6g0468401 46.250 80 41 1 1 78 1 80 1.43e-15 73.6
Msa1136610 MtrunA17_Chr6g0468021 58.824 102 42 0 95 196 189 290 7.40e-34 127
Msa1136610 MtrunA17_Chr6g0468021 46.250 80 41 1 1 78 1 80 8.19e-15 72.0
Msa1136610 MtrunA17_Chr6g0467961 57.843 102 43 0 95 196 189 290 9.64e-34 126
Msa1136610 MtrunA17_Chr6g0467961 42.169 83 46 1 1 81 1 83 1.35e-13 68.6
Msa1136610 MtrunA17_Chr6g0468451 57.843 102 43 0 95 196 189 290 1.15e-33 126
Msa1136610 MtrunA17_Chr6g0468451 47.500 80 40 1 1 78 1 80 3.98e-15 73.2
Msa1136610 MtrunA17_Chr8g0351821 54.082 98 45 0 95 192 189 286 1.47e-33 124
Msa1136610 MtrunA17_Chr8g0351821 45.000 80 42 1 1 78 1 80 3.38e-13 67.4
Msa1136610 MtrunA17_Chr5g0430721 53.636 110 43 1 95 196 228 337 1.50e-33 126
Msa1136610 MtrunA17_Chr5g0430721 39.286 112 56 2 1 110 42 143 1.31e-15 74.3
Msa1136610 MtrunA17_Chr3g0123111 55.769 104 44 1 95 196 188 291 1.70e-33 125
Msa1136610 MtrunA17_Chr3g0123111 43.750 80 43 1 1 78 1 80 6.72e-15 72.4
Msa1136610 MtrunA17_Chr5g0415501 55.752 113 46 2 1 109 1 113 1.76e-33 115
Msa1136610 MtrunA17_Chr5g0416571 51.818 110 45 1 95 196 162 271 2.63e-33 121
Msa1136610 MtrunA17_Chr5g0416571 43.956 91 49 1 1 89 1 91 1.13e-14 71.2
Msa1136610 MtrunA17_Chr6g0468341 55.340 103 46 0 94 196 189 291 2.79e-33 125
Msa1136610 MtrunA17_Chr6g0468341 44.578 83 44 1 1 81 1 83 1.60e-14 71.2
Msa1136610 MtrunA17_Chr5g0430621 53.636 110 43 1 95 196 187 296 5.64e-33 124
Msa1136610 MtrunA17_Chr5g0430621 50.000 80 38 1 1 78 1 80 1.86e-15 73.9
Msa1136610 MtrunA17_Chr1g0155321 51.818 110 45 1 95 196 182 291 1.10e-32 123
Msa1136610 MtrunA17_Chr1g0155321 45.000 80 42 1 1 78 1 80 1.44e-14 71.6
Msa1136610 MtrunA17_Chr5g0430581 51.818 110 45 1 95 196 182 291 2.65e-32 122
Msa1136610 MtrunA17_Chr5g0430581 45.000 80 42 1 1 78 1 80 1.63e-12 65.5
Msa1136610 MtrunA17_Chr5g0430951 52.727 110 44 1 95 196 187 296 4.33e-32 122
Msa1136610 MtrunA17_Chr5g0430951 40.179 112 55 2 1 110 1 102 1.78e-14 71.2
Msa1136610 MtrunA17_Chr5g0429951 52.727 110 44 1 95 196 187 296 4.97e-32 121
Msa1136610 MtrunA17_Chr5g0429951 39.286 112 56 2 1 110 1 102 8.16e-14 69.3
Msa1136610 MtrunA17_Chr5g0430511 50.909 110 46 1 95 196 188 297 5.44e-32 121
Msa1136610 MtrunA17_Chr5g0430511 42.500 80 44 1 1 78 1 80 1.47e-11 62.8
Msa1136610 MtrunA17_Chr5g0429961 49.091 110 48 1 95 196 187 296 5.79e-32 121
Msa1136610 MtrunA17_Chr5g0429961 47.500 80 40 1 1 78 1 80 4.03e-14 70.1
Msa1136610 MtrunA17_Chr4g0027251 51.818 110 45 2 95 196 187 296 7.22e-32 121
Msa1136610 MtrunA17_Chr4g0027251 50.000 78 37 1 1 76 1 78 9.57e-14 68.9
Msa1136610 MtrunA17_Chr6g0468271 54.369 103 47 0 94 196 186 288 7.60e-32 121
Msa1136610 MtrunA17_Chr6g0468271 46.250 80 41 1 1 78 1 80 2.66e-15 73.6
Msa1136610 MtrunA17_Chr5g0430141 51.818 110 45 1 95 196 187 296 8.39e-32 121
Msa1136610 MtrunA17_Chr5g0430141 47.436 78 39 1 1 76 1 78 5.34e-13 67.0
Msa1136610 MtrunA17_Chr5g0430901 51.818 110 45 1 95 196 187 296 9.61e-32 120
Msa1136610 MtrunA17_Chr5g0430901 50.000 78 37 1 1 76 1 78 5.77e-14 69.7
Msa1136610 MtrunA17_Chr7g0244231 50.909 110 46 1 95 196 182 291 1.08e-31 120
Msa1136610 MtrunA17_Chr7g0244231 43.750 80 43 1 1 78 1 80 1.82e-12 65.5
Msa1136610 MtrunA17_Chr5g0430291 50.909 110 46 1 95 196 187 296 1.30e-31 120
Msa1136610 MtrunA17_Chr5g0430291 46.250 80 41 1 1 78 1 80 2.59e-14 70.9
Msa1136610 MtrunA17_Chr6g0468151 52.381 105 48 1 94 196 185 289 1.79e-31 120
Msa1136610 MtrunA17_Chr1g0155991 53.636 110 43 1 95 196 184 293 4.58e-31 119
Msa1136610 MtrunA17_Chr1g0155991 45.652 92 46 2 1 90 1 90 7.34e-15 72.4
Msa1136610 MtrunA17_Chr5g0431051 50.000 110 47 1 95 196 187 296 5.48e-31 119
Msa1136610 MtrunA17_Chr5g0431051 51.282 78 36 1 1 76 1 78 3.18e-14 70.5
Msa1136610 MtrunA17_Chr5g0430641 50.909 110 46 1 95 196 187 296 9.08e-31 118
Msa1136610 MtrunA17_Chr5g0430641 50.000 78 37 1 1 76 1 78 5.81e-13 66.6
Msa1136610 MtrunA17_Chr6g0467911 52.885 104 47 1 95 196 189 292 1.07e-30 117
Msa1136610 MtrunA17_Chr6g0467911 45.679 81 42 1 1 79 1 81 3.40e-15 73.2
Msa1136610 MtrunA17_Chr6g0468331 53.398 103 48 0 94 196 187 289 2.37e-30 117
Msa1136610 MtrunA17_Chr6g0468331 46.250 80 41 1 1 78 1 80 1.20e-15 74.7
Msa1136610 MtrunA17_Chr6g0470021 53.846 104 46 1 95 196 80 183 2.53e-30 117
Msa1136610 MtrunA17_Chr6g0468101 52.525 99 47 0 95 193 188 286 5.50e-30 115
Msa1136610 MtrunA17_Chr6g0468101 46.250 80 41 1 1 78 1 80 1.67e-15 74.3
Msa1136610 MtrunA17_Chr6g0469991 50.000 104 50 1 95 196 189 292 5.79e-30 113
Msa1136610 MtrunA17_Chr6g0469991 42.500 80 44 1 1 78 1 80 2.07e-12 64.7
Msa1136610 MtrunA17_Chr3g0085931 53.125 96 45 0 94 189 188 283 7.62e-30 115
Msa1136610 MtrunA17_Chr3g0085931 47.500 80 40 1 1 78 1 80 1.04e-13 68.9
Msa1136610 MtrunA17_Chr6g0468121 55.882 102 45 0 95 196 190 291 1.23e-29 115
Msa1136610 MtrunA17_Chr6g0468121 43.750 80 43 1 1 78 1 80 7.84e-14 69.3
Msa1136610 MtrunA17_Chr6g0470081 50.962 104 49 1 95 196 189 292 2.40e-29 114
Msa1136610 MtrunA17_Chr6g0470081 46.250 80 41 1 1 78 1 80 5.65e-15 72.8
Msa1136610 MtrunA17_Chr5g0430441 48.182 110 49 1 95 196 187 296 2.42e-29 114
Msa1136610 MtrunA17_Chr5g0430441 48.718 78 38 1 1 76 1 78 1.53e-12 65.5
Msa1136610 MtrunA17_Chr5g0430331 49.091 110 48 1 95 196 183 292 5.36e-29 111
Msa1136610 MtrunA17_Chr5g0430331 47.500 80 40 1 1 78 1 80 4.55e-14 69.7
Msa1136610 MtrunA17_Chr6g0470011 50.000 104 50 1 95 196 189 292 5.92e-29 112
Msa1136610 MtrunA17_Chr6g0470011 42.500 80 44 1 1 78 1 80 2.36e-12 65.1
Msa1136610 MtrunA17_Chr1g0169901 50.505 99 49 0 95 193 193 291 2.25e-28 111
Msa1136610 MtrunA17_Chr8g0338671 48.544 103 52 1 95 196 82 184 7.16e-28 109
Msa1136610 MtrunA17_Chr8g0352831 49.020 102 52 0 95 196 214 315 7.20e-28 109
Msa1136610 MtrunA17_Chr3g0089431 47.059 102 54 0 95 196 208 309 2.99e-27 107
Msa1136610 MtrunA17_Chr3g0089991 47.059 102 54 0 95 196 208 309 4.86e-27 107
Msa1136610 MtrunA17_Chr3g0089961 47.059 102 54 0 95 196 204 305 7.58e-27 107
Msa1136610 MtrunA17_Chr3g0089421 47.059 102 54 0 95 196 203 304 8.54e-27 106
Msa1136610 MtrunA17_Chr3g0090401 44.118 102 57 0 95 196 415 516 1.02e-26 106
Msa1136610 MtrunA17_Chr3g0092241 47.059 102 54 0 95 196 204 305 1.16e-26 106
Msa1136610 MtrunA17_Chr7g0218941 50.495 101 49 1 97 196 202 302 1.19e-26 106
Msa1136610 MtrunA17_Chr8g0346831 47.573 103 53 1 95 196 200 302 1.42e-26 106
Msa1136610 MtrunA17_Chr3g0089541 47.059 102 54 0 95 196 208 309 1.75e-26 105
Msa1136610 MtrunA17_Chr8g0337891 47.059 102 54 0 95 196 199 300 1.99e-26 105
Msa1136610 MtrunA17_Chr3g0091061 48.039 102 53 0 95 196 204 305 1.99e-26 105
Msa1136610 MtrunA17_Chr2g0316291 46.078 102 55 0 95 196 204 305 2.26e-26 105
Msa1136610 MtrunA17_Chr3g0090141 44.118 102 57 0 95 196 204 305 2.44e-26 105
Msa1136610 MtrunA17_Chr3g0089651 47.059 102 54 0 95 196 208 309 2.54e-26 105
Msa1136610 MtrunA17_Chr3g0090371 44.118 102 57 0 95 196 204 305 2.77e-26 105
Msa1136610 MtrunA17_Chr3g0089761 46.078 102 55 0 95 196 204 305 3.11e-26 105
Msa1136610 MtrunA17_Chr3g0089781 47.059 102 54 0 95 196 204 305 3.36e-26 105
Msa1136610 MtrunA17_Chr3g0087841 44.118 102 57 0 95 196 204 305 4.10e-26 104
Msa1136610 MtrunA17_Chr3g0090651 47.059 102 54 0 95 196 204 305 4.34e-26 104
Msa1136610 MtrunA17_Chr3g0089591 46.078 102 55 0 95 196 209 310 4.71e-26 104
Msa1136610 MtrunA17_Chr3g0090691 47.059 102 54 0 95 196 204 305 5.12e-26 104
Msa1136610 MtrunA17_Chr2g0309721 46.078 102 55 0 95 196 204 305 5.28e-26 104
Msa1136610 MtrunA17_Chr3g0091041 47.059 102 54 0 95 196 204 305 5.82e-26 103
Msa1136610 MtrunA17_Chr5g0417301 46.789 109 50 1 96 196 163 271 6.68e-26 103
Msa1136610 MtrunA17_Chr3g0089601 48.039 102 53 0 95 196 202 303 6.93e-26 103
Msa1136610 MtrunA17_Chr1g0189551 43.396 106 56 1 95 196 226 331 7.22e-26 103
Msa1136610 MtrunA17_Chr8g0338621 47.573 103 53 1 95 196 200 302 7.46e-26 103
Msa1136610 MtrunA17_Chr3g0089501 48.039 102 53 0 95 196 202 303 7.72e-26 103
Msa1136610 MtrunA17_Chr8g0338261 45.631 103 55 1 95 196 199 301 8.51e-26 103
Msa1136610 MtrunA17_Chr3g0091081 47.059 102 54 0 95 196 204 305 1.10e-25 103
Msa1136610 MtrunA17_Chr3g0090431 44.118 102 57 0 95 196 76 177 1.15e-25 103
Msa1136610 MtrunA17_Chr5g0446611 46.078 102 55 0 95 196 205 306 1.37e-25 103
Msa1136610 MtrunA17_Chr3g0089251 47.059 102 54 0 95 196 233 334 1.56e-25 103
Msa1136610 MtrunA17_Chr3g0082881 40.881 159 70 5 38 196 155 289 1.58e-25 103
Msa1136610 MtrunA17_Chr3g0089471 45.098 102 56 0 95 196 205 306 1.66e-25 103
Msa1136610 MtrunA17_Chr3g0089211 47.059 102 54 0 95 196 251 352 1.98e-25 102
Msa1136610 MtrunA17_Chr2g0282991 46.078 102 55 0 95 196 202 303 3.13e-25 102
Msa1136610 MtrunA17_Chr1g0164611 47.059 102 54 0 95 196 208 309 5.30e-25 101
Msa1136610 MtrunA17_Chr3g0082101 47.059 102 54 0 95 196 208 309 5.61e-25 101
Msa1136610 MtrunA17_Chr8g0352861 45.098 102 56 0 95 196 211 312 8.26e-25 101
Msa1136610 MtrunA17_Chr6g0475491 43.269 104 57 1 95 196 200 303 1.55e-24 100
Msa1136610 MtrunA17_Chr3g0082891 49.020 102 47 2 95 196 193 289 1.56e-24 100
Msa1136610 MtrunA17_Chr6g0471941 48.039 102 53 0 95 196 199 300 2.13e-24 99.8
Msa1136610 MtrunA17_Chr5g0417251 71.212 66 17 1 133 196 1 66 2.37e-24 99.8
Msa1136610 MtrunA17_Chr8g0338361 46.602 103 54 1 95 196 64 166 2.85e-24 99.0
Msa1136610 MtrunA17_Chr3g0082871 40.845 142 64 3 55 196 168 289 3.14e-24 99.4
Msa1136610 MtrunA17_Chr3g0089811 44.118 102 57 0 95 196 204 305 5.24e-24 99.0
Msa1136610 MtrunA17_Chr7g0248531 47.253 91 48 0 95 185 192 282 5.89e-24 98.6
Msa1136610 MtrunA17_Chr8g0392521 43.519 108 50 2 95 193 170 275 6.18e-24 96.7
Msa1136610 MtrunA17_Chr2g0282981 43.137 102 58 0 95 196 202 303 1.13e-23 97.1
Msa1136610 MtrunA17_Chr3g0089931 32.338 201 119 5 5 196 98 290 1.56e-23 97.1
Msa1136610 MtrunA17_Chr8g0338391 46.078 102 55 0 95 196 198 299 2.14e-23 97.1
Msa1136610 MtrunA17_Chr7g0248411 41.071 112 56 1 95 196 133 244 2.68e-23 94.7
Msa1136610 MtrunA17_Chr8g0348931 43.810 105 52 1 95 192 204 308 3.50e-23 96.3
Msa1136610 MtrunA17_Chr3g0092261 44.144 111 51 2 95 196 241 349 4.36e-23 96.3
Msa1136610 MtrunA17_Chr4g0025391 42.342 111 53 2 95 196 196 304 4.47e-23 96.3
Msa1136610 MtrunA17_Chr3g0085421 40.196 102 60 1 95 196 130 230 1.64e-22 91.3
Msa1136610 MtrunA17_Chr7g0248431 41.071 112 56 1 95 196 199 310 1.72e-22 94.4
Msa1136610 MtrunA17_Chr3g0089911 43.243 111 52 2 95 196 196 304 1.88e-22 94.4
Msa1136610 MtrunA17_Chr1g0164581 44.118 102 57 0 95 196 179 280 2.09e-22 94.4
Msa1136610 MtrunA17_Chr3g0082131 44.118 102 57 0 95 196 203 304 2.13e-22 94.0
Msa1136610 MtrunA17_Chr8g0338251 42.718 103 58 1 95 196 185 287 2.51e-22 94.0
Msa1136610 MtrunA17_Chr7g0248221 41.071 112 56 1 95 196 199 310 3.30e-22 93.6
Msa1136610 MtrunA17_Chr3g0085561 43.137 102 57 1 95 196 175 275 3.35e-22 93.6
Msa1136610 MtrunA17_Chr3g0085801 44.118 102 56 1 95 196 208 308 3.68e-22 93.6
Msa1136610 MtrunA17_Chr6g0484551 42.574 101 58 0 95 195 206 306 4.16e-22 93.2
Msa1136610 MtrunA17_Chr1g0147141 41.748 103 59 1 95 196 208 310 4.60e-22 93.2
Msa1136610 MtrunA17_Chr4g0010201 47.000 100 48 1 97 196 198 292 6.01e-22 92.8
Msa1136610 MtrunA17_Chr3g0082791 43.689 103 55 2 95 196 206 306 6.45e-22 92.8
Msa1136610 MtrunA17_Chr3g0087701 42.157 102 58 1 95 196 190 290 8.43e-22 92.4
Msa1136610 MtrunA17_Chr3g0085331 43.137 102 57 1 95 196 206 306 1.09e-21 92.0
Msa1136610 MtrunA17_Chr4g0009781 43.000 100 52 1 97 196 198 292 1.12e-21 92.0
Msa1136610 MtrunA17_Chr4g0051651 48.454 97 48 1 95 189 224 320 1.31e-21 91.7
Msa1136610 MtrunA17_Chr8g0352211 42.424 99 56 1 99 196 1200 1298 1.49e-21 91.7
Msa1136610 MtrunA17_Chr3g0089871 39.450 109 57 2 95 194 197 305 1.59e-21 91.7
Msa1136610 MtrunA17_Chr2g0299131 38.235 102 63 0 95 196 35 136 2.20e-21 87.8
Msa1136610 MtrunA17_Chr3g0086151 45.631 103 53 2 95 196 188 288 2.38e-21 90.9
Msa1136610 MtrunA17_Chr3g0085501 42.157 102 58 1 95 196 206 306 2.48e-21 90.9
Msa1136610 MtrunA17_Chr3g0086181 45.631 103 53 2 95 196 188 288 2.54e-21 90.9
Msa1136610 MtrunA17_Chr3g0087541 43.137 102 57 1 95 196 206 306 3.00e-21 90.9
Msa1136610 MtrunA17_Chr3g0085451 41.176 102 59 1 95 196 178 278 3.79e-21 90.5
Msa1136610 MtrunA17_Chr7g0257541 38.938 113 58 1 95 196 208 320 4.29e-21 90.5
Msa1136610 MtrunA17_Chr3g0084031 44.118 102 56 1 95 196 208 308 5.70e-21 90.1
Msa1136610 MtrunA17_Chr3g0085721 46.591 88 47 0 96 183 178 265 5.90e-21 89.0
Msa1136610 MtrunA17_Chr7g0257221 38.983 118 56 1 95 196 204 321 1.28e-20 89.0
Msa1136610 MtrunA17_Chr7g0257551 38.938 113 56 1 95 194 130 242 1.28e-20 88.2
Msa1136610 MtrunA17_Chr3g0087731 46.067 89 47 1 97 185 1 88 1.44e-20 89.0
Msa1136610 MtrunA17_Chr3g0082311 36.567 134 79 2 64 196 178 306 2.24e-20 88.2
Msa1136610 MtrunA17_Chr6g0456121 39.806 103 61 1 95 196 187 289 2.71e-20 88.2
Msa1136610 MtrunA17_Chr3g0078361 36.667 120 58 1 95 196 2 121 2.73e-20 87.4
Msa1136610 MtrunA17_Chr1g0164631 39.167 120 55 1 95 196 194 313 4.10e-20 87.4
Msa1136610 MtrunA17_Chr3g0087581 47.778 90 46 1 96 185 192 280 6.03e-20 87.0
Msa1136610 MtrunA17_Chr2g0299091 39.216 102 62 0 95 196 172 273 6.05e-20 87.0
Msa1136610 MtrunA17_Chr3g0082811 38.028 142 68 3 55 196 168 289 9.19e-20 86.7
Msa1136610 MtrunA17_Chr2g0299101 38.235 102 63 0 95 196 198 299 1.36e-19 85.9
Msa1136610 MtrunA17_Chr7g0257191 39.496 119 55 1 95 196 204 322 1.55e-19 85.9
Msa1136610 MtrunA17_Chr3g0086621 42.157 102 58 1 95 196 188 288 2.28e-19 85.5
Msa1136610 MtrunA17_Chr3g0086741 39.604 101 61 0 96 196 215 315 2.82e-19 85.1
Msa1136610 MtrunA17_Chr3g0082381 40.777 103 60 1 95 196 203 305 2.94e-19 84.0
Msa1136610 MtrunA17_Chr3g0086221 43.137 102 57 1 95 196 187 287 2.96e-19 85.1
Msa1136610 MtrunA17_Chr1g0169951 39.474 114 57 1 95 196 206 319 3.58e-19 84.7
Msa1136610 MtrunA17_Chr3g0085521 39.604 101 61 0 96 196 183 283 5.51e-19 84.3
Msa1136610 MtrunA17_Chr3g0084971 47.059 102 54 0 95 196 194 295 6.95e-19 84.0
Msa1136610 MtrunA17_Chr3g0082391 39.216 102 62 0 95 196 205 306 7.60e-19 84.0
Msa1136610 MtrunA17_Chr5g0433771 40.351 114 56 1 95 196 200 313 8.05e-19 83.6
Msa1136610 MtrunA17_Chr4g0010491 41.837 98 52 1 99 196 200 292 1.05e-18 83.2
Msa1136610 MtrunA17_Chr7g0257201 38.983 118 56 1 95 196 204 321 1.33e-18 83.2
Msa1136610 MtrunA17_Chr4g0010251 39.796 98 54 1 99 196 200 292 1.48e-18 83.2
Msa1136610 MtrunA17_Chr8g0338421 44.872 78 42 1 120 196 1 78 1.54e-18 77.0
Msa1136610 MtrunA17_Chr3g0086161 45.055 91 49 1 95 185 188 277 1.76e-18 82.8
Msa1136610 MtrunA17_Chr3g0085551 39.423 104 58 2 96 196 81 182 1.96e-18 82.8
Msa1136610 MtrunA17_Chr4g0010221 40.816 98 53 1 99 196 200 292 2.04e-18 82.8
Msa1136610 MtrunA17_Chr3g0085651 46.154 91 48 1 95 185 197 286 2.87e-18 82.4
Msa1136610 MtrunA17_Chr3g0086091 43.564 101 54 2 97 196 1 99 3.29e-18 82.0
Msa1136610 MtrunA17_Chr1g0164391 42.424 99 56 1 95 192 204 302 4.22e-18 81.6
Msa1136610 MtrunA17_Chr3g0085701 38.614 101 62 0 96 196 189 289 4.64e-18 81.6
Msa1136610 MtrunA17_Chr3g0082351 38.235 102 63 0 95 196 203 304 5.85e-18 81.3
Msa1136610 MtrunA17_Chr7g0221481 47.253 91 47 1 95 185 192 281 8.47e-18 80.9
Msa1136610 MtrunA17_Chr4g0010261 40.816 98 53 1 99 196 200 292 9.10e-18 80.9
Msa1136610 MtrunA17_Chr2g0308491 40.196 102 61 0 95 196 24 125 1.33e-17 78.2
Msa1136610 MtrunA17_Chr2g0299121 36.275 102 65 0 95 196 198 299 1.99e-17 79.7
Msa1136610 MtrunA17_Chr4g0020501 39.216 102 62 0 95 196 158 259 2.30e-17 79.7
Msa1136610 MtrunA17_Chr6g0456131 37.374 99 61 1 99 196 193 291 2.79e-17 79.3
Msa1136610 MtrunA17_Chr3g0084081 44.118 102 56 1 95 196 206 306 1.05e-16 77.8
Msa1136610 MtrunA17_Chr2g0299151 34.314 102 67 0 95 196 185 286 1.05e-16 77.8
Msa1136610 MtrunA17_Chr6g0468141 39.683 126 54 3 71 196 71 174 1.74e-16 75.5
Msa1136610 MtrunA17_Chr8g0338681 47.368 76 39 1 120 194 1 76 4.48e-16 73.9
Msa1136610 MtrunA17_Chr3g0113791 39.130 92 56 0 95 186 188 279 5.44e-16 75.5
Msa1136610 MtrunA17_Chr6g0470061 46.250 80 41 1 1 78 1 80 5.67e-16 72.8
Msa1136610 MtrunA17_Chr3g0113481 39.130 92 56 0 95 186 188 279 5.75e-16 75.5
Msa1136610 MtrunA17_Chr4g0008461 35.246 122 59 2 95 196 166 287 1.34e-15 74.3
Msa1136610 MtrunA17_Chr3g0101201 39.286 84 49 1 95 176 211 294 2.18e-15 73.9
Msa1136610 MtrunA17_Chr3g0085091 43.564 101 56 1 96 196 194 293 2.80e-15 73.6
Msa1136610 MtrunA17_Chr3g0085471 45.098 102 55 1 95 196 206 306 2.94e-15 73.6
Msa1136610 MtrunA17_Chr3g0084051 45.098 102 55 1 95 196 206 306 3.51e-15 73.2
Msa1136610 MtrunA17_Chr3g0101211 35.714 84 54 0 95 178 2 85 4.72e-15 72.4
Msa1136610 MtrunA17_Chr3g0085131 41.250 80 47 0 96 175 189 268 5.76e-15 72.8
Msa1136610 MtrunA17_Chr6g0468191 43.750 80 43 1 1 78 1 80 1.18e-14 70.5
Msa1136610 MtrunA17_Chr3g0083621 31.613 155 77 4 64 196 170 317 1.31e-14 71.6
Msa1136610 MtrunA17_Chr3g0101231 38.202 89 48 1 95 176 214 302 1.60e-14 71.2
Msa1136610 MtrunA17_Chr5g0404741 40.476 84 47 1 95 175 198 281 1.95e-14 71.2
Msa1136610 MtrunA17_Chr3g0085111 37.895 95 56 1 95 189 187 278 2.19e-14 70.9
Msa1136610 MtrunA17_Chr3g0085171 41.772 79 46 0 96 174 175 253 2.39e-14 70.9
Msa1136610 MtrunA17_Chr8g0355071 37.895 95 47 4 109 196 27 116 3.15e-14 69.7
Msa1136610 MtrunA17_Chr3g0083751 35.833 120 55 3 95 192 188 307 3.88e-14 70.1
Msa1136610 MtrunA17_Chr8g0355411 41.905 105 55 4 95 196 197 298 9.90e-14 68.9
Msa1136610 MtrunA17_Chr3g0084061 41.758 91 53 0 95 185 196 286 2.44e-13 67.8
Msa1136610 MtrunA17_Chr3g0101181 37.079 89 49 1 95 176 213 301 5.57e-13 67.0
Msa1136610 MtrunA17_Chr8g0338871 46.032 63 33 1 99 160 84 146 1.37e-12 62.4
Msa1136610 MtrunA17_Chr1g0189351 31.193 109 66 2 95 196 201 307 1.99e-12 65.1
Msa1136610 MtrunA17_Chr1g0189271 31.193 109 66 2 95 196 41 147 2.93e-12 64.3
Msa1136610 MtrunA17_Chr2g0309151 33.721 86 45 1 120 193 1 86 6.96e-12 63.5
Msa1136610 MtrunA17_Chr3g0101331 31.193 109 66 2 95 196 206 312 8.57e-12 63.5
Msa1136610 MtrunA17_Chr3g0101251 36.471 85 47 1 95 172 205 289 8.64e-12 63.2
Msa1136610 MtrunA17_Chr3g0101321 32.075 106 66 2 95 196 200 303 1.07e-11 63.2
Msa1136610 MtrunA17_Chr3g0101271 34.091 88 51 1 95 175 182 269 1.19e-11 62.8
Msa1136610 MtrunA17_Chr3g0101241 34.091 88 51 1 95 175 182 269 1.22e-11 62.8
Msa1136610 MtrunA17_Chr5g0410001 29.358 109 68 2 95 196 192 298 1.24e-11 62.8
Msa1136610 MtrunA17_Chr3g0100801 33.333 90 53 1 95 177 169 258 1.68e-11 62.4
Msa1136610 MtrunA17_Chr3g0081361 33.036 112 60 3 95 196 214 320 2.98e-11 61.6
Msa1136610 MtrunA17_Chr3g0081341 31.579 114 59 4 95 196 269 375 3.31e-11 61.6
Msa1136610 MtrunA17_Chr3g0081391 31.818 110 64 3 95 196 205 311 5.22e-11 61.2
Msa1136610 MtrunA17_Chr1g0189501 38.750 80 33 1 96 175 37 100 5.75e-11 57.4
Msa1136610 MtrunA17_Chr3g0101221 35.955 89 50 1 95 176 208 296 7.46e-11 60.5
Msa1136610 MtrunA17_Chr3g0080741 34.444 90 52 1 95 177 208 297 8.87e-11 60.5
Msa1136610 MtrunA17_Chr3g0085161 36.667 90 42 1 96 185 67 141 9.03e-11 60.5
Msa1136610 MtrunA17_Chr3g0080601 35.556 90 51 1 95 177 205 294 9.67e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136610 AT3G14460.1 37.624 101 63 0 96 196 203 303 8.78e-21 89.7
Msa1136610 AT3G14470.1 39.423 104 61 1 95 196 205 308 2.25e-19 85.9
Msa1136610 AT3G14470.2 39.423 104 61 1 95 196 205 308 2.25e-19 85.9
Msa1136610 AT3G50950.2 33.803 142 77 3 55 196 167 291 3.75e-18 82.4
Msa1136610 AT3G50950.1 33.803 142 77 3 55 196 167 291 3.75e-18 82.4
Msa1136610 AT5G48620.6 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G48620.1 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G48620.4 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G48620.2 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G48620.3 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G48620.5 42.857 98 52 2 95 190 194 289 4.41e-18 82.0
Msa1136610 AT5G43470.3 42.857 98 52 2 95 190 194 289 7.33e-18 81.3
Msa1136610 AT5G43470.2 42.857 98 52 2 95 190 194 289 7.33e-18 81.3
Msa1136610 AT5G43470.4 42.857 98 52 2 95 190 194 289 7.33e-18 81.3
Msa1136610 AT5G43470.1 42.857 98 52 2 95 190 194 289 7.33e-18 81.3
Msa1136610 AT1G59780.2 42.268 97 53 2 95 190 184 278 3.79e-17 79.3
Msa1136610 AT1G59780.1 42.268 97 53 2 95 190 189 283 3.87e-17 79.3
Msa1136610 AT1G53350.1 42.857 98 52 2 95 190 192 287 1.82e-16 77.4
Msa1136610 AT5G35450.2 40.816 98 54 2 95 190 192 287 3.00e-16 76.6
Msa1136610 AT5G35450.1 40.816 98 54 2 95 190 192 287 3.00e-16 76.6
Msa1136610 AT1G10920.1 40.816 98 54 2 95 190 69 164 2.64e-15 73.9
Msa1136610 AT1G10920.2 40.816 98 54 2 95 190 69 164 2.64e-15 73.9
Msa1136610 AT1G10920.4 40.816 98 54 2 95 190 69 164 2.64e-15 73.9
Msa1136610 AT1G59620.2 37.374 99 59 2 95 192 57 153 9.69e-15 72.4
Msa1136610 AT1G58390.1 40.000 100 54 3 95 190 192 289 1.06e-14 72.4
Msa1136610 AT1G58390.2 40.000 100 54 3 95 190 192 289 1.06e-14 72.4
Msa1136610 AT1G58400.1 40.000 100 54 3 95 190 193 290 1.50e-14 71.6
Msa1136610 AT1G58400.3 40.000 100 54 3 95 190 193 290 1.59e-14 71.6
Msa1136610 AT1G58400.2 40.000 100 54 3 95 190 193 290 1.59e-14 71.6
Msa1136610 AT1G59124.1 38.000 100 56 2 95 190 192 289 2.59e-14 71.2
Msa1136610 AT1G58807.2 38.000 100 56 2 95 190 192 289 2.59e-14 71.2
Msa1136610 AT1G59124.2 38.000 100 56 2 95 190 192 289 3.12e-14 70.9
Msa1136610 AT1G58807.1 38.000 100 56 2 95 190 192 289 3.12e-14 70.9
Msa1136610 AT1G59218.1 38.000 100 56 2 95 190 192 289 3.76e-14 70.5
Msa1136610 AT1G59218.2 38.000 100 56 2 95 190 192 289 3.76e-14 70.5
Msa1136610 AT1G59218.3 38.000 100 56 2 95 190 192 289 3.76e-14 70.5
Msa1136610 AT1G58848.1 38.000 100 56 2 95 190 192 289 3.76e-14 70.5
Msa1136610 AT1G58848.2 38.000 100 56 2 95 190 192 289 3.76e-14 70.5
Msa1136610 AT1G58602.2 38.095 105 54 2 95 190 191 293 5.89e-14 70.1
Msa1136610 AT1G58602.1 38.095 105 54 2 95 190 191 293 5.89e-14 70.1
Msa1136610 AT3G46530.1 33.333 108 64 2 95 196 194 299 1.73e-12 65.9
Msa1136610 AT1G58410.1 37.000 100 57 2 95 190 191 288 2.03e-11 62.8
Msa1136610 AT1G58410.4 37.000 100 57 2 95 190 191 288 2.03e-11 62.8
Msa1136610 AT1G58410.2 37.000 100 57 2 95 190 191 288 2.03e-11 62.8
Msa1136610 AT1G58410.3 37.000 100 57 2 95 190 191 288 2.11e-11 62.8

Find 42 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAATCTTGTGATGATT+TGG 0.268833 7_4:+5261899 Msa1136610:CDS
TACTAGTATTGGATGATGTT+TGG 0.273326 7_4:+5261976 Msa1136610:CDS
AAAGAGATGGGCCTATTTCT+TGG 0.295982 7_4:+5261303 Msa1136610:CDS
ACTAGTATTGGATGATGTTT+GGG 0.365772 7_4:+5261977 Msa1136610:CDS
AGTGTTGGACCACCCTTTCA+TGG 0.372653 7_4:-5261797 None:intergenic
GCAGAAGTTAAGATCTGTAT+TGG 0.378442 7_4:+5262019 Msa1136610:CDS
CTTAGTTGCCGCTTCGATGA+TGG 0.396750 7_4:-5261880 None:intergenic
GGGATGATAAACAAGAGAAT+TGG 0.396860 7_4:+5261997 Msa1136610:CDS
TTTCATGGTTGAAGATAAGT+TGG 0.416984 7_4:-5261782 None:intergenic
TGCTGCTTACGTCGACATCT+TGG 0.430231 7_4:+5261449 Msa1136610:CDS
CTCAGTGAATTGTTTCTCCT+CGG 0.443895 7_4:-5261391 None:intergenic
ATTGTGGGTCTAGGCGGACT+TGG 0.471466 7_4:+5261744 Msa1136610:intron
AGACTTCAAGAACTGCTTCA+AGG 0.473423 7_4:+5261942 Msa1136610:CDS
AAGCTTGTTCGCTAGAATCA+AGG 0.473524 7_4:+5261353 Msa1136610:CDS
TCTTGAAGTCTTCTTTGTAG+TGG 0.487975 7_4:-5261930 None:intergenic
AACTTATCTTCAACCATGAA+AGG 0.494230 7_4:+5261784 Msa1136610:CDS
ATTCACTGAGAAAGCTATCA+AGG 0.505116 7_4:+5261404 Msa1136610:CDS
CGAGTGTGCCACCAATGTAC+TGG 0.511294 7_4:+5261473 Msa1136610:CDS
TTAAGATCTGTATTGGCTTG+TGG 0.514593 7_4:+5262026 Msa1136610:CDS
CTGAGAAAGCTATCAAGGAT+TGG 0.516780 7_4:+5261409 Msa1136610:CDS
GGATACAAGGGTGGACTACA+TGG 0.539396 7_4:+5261510 Msa1136610:CDS
TTCATGGTTGAAGATAAGTT+GGG 0.539910 7_4:-5261781 None:intergenic
CTCACTCATTCAGAAAGAGA+TGG 0.545008 7_4:+5261290 Msa1136610:CDS
TGTATTGGCTTGTGGAGGAA+AGG 0.546492 7_4:+5262034 Msa1136610:CDS
TCACTCATTCAGAAAGAGAT+GGG 0.562710 7_4:+5261291 Msa1136610:CDS
ACATCTTCATATCAAAGTGT+TGG 0.563394 7_4:-5261812 None:intergenic
GTTGGAGTACAAAGGATACA+AGG 0.563516 7_4:+5261497 Msa1136610:CDS
GTATTGGCTTGTGGAGGAAA+GGG 0.569196 7_4:+5262035 Msa1136610:CDS
ACTTATCTTCAACCATGAAA+GGG 0.576199 7_4:+5261785 Msa1136610:CDS
CTCCAACTCCAGTACATTGG+TGG 0.583560 7_4:-5261481 None:intergenic
TGCCACCAATGTACTGGAGT+TGG 0.586074 7_4:+5261479 Msa1136610:CDS
GTACTCCAACTCCAGTACAT+TGG 0.588509 7_4:-5261484 None:intergenic
AACACTTTGATATGAAGATG+TGG 0.591332 7_4:+5261814 Msa1136610:CDS
GACTAGAGCCATCATCGAAG+CGG 0.620026 7_4:+5261872 Msa1136610:CDS
AGATCTGTATTGGCTTGTGG+AGG 0.620106 7_4:+5262029 Msa1136610:CDS
GGCTATTCTTGAAGATACCG+AGG 0.640221 7_4:+5261374 Msa1136610:CDS
TGAGTGAGCTCAAATTGTCA+AGG 0.644556 7_4:-5261275 None:intergenic
TATCTTCAACCATGAAAGGG+TGG 0.671089 7_4:+5261788 Msa1136610:CDS
TTGGAGTACAAAGGATACAA+GGG 0.682345 7_4:+5261498 Msa1136610:CDS
GTACTGGAGTTGGAGTACAA+AGG 0.707717 7_4:+5261489 Msa1136610:CDS
GAGTACAAAGGATACAAGGG+TGG 0.714247 7_4:+5261501 Msa1136610:CDS
ACACTTTGATATGAAGATGT+GGG 0.717498 7_4:+5261815 Msa1136610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGATTTTTACTAGTAT+TGG + chr7_4:5261965-5261984 Msa1136610:CDS 15.0%
!!! AAAAAGATTTTTACTAGTAT+TGG + chr7_4:5261965-5261984 Msa1136610:CDS 15.0%
! AGATGAAATATCTGAAGAAA+AGG + chr7_4:5261627-5261646 Msa1136610:intron 25.0%
! TAAGAAATCTTGTGATGATT+TGG + chr7_4:5261899-5261918 Msa1136610:CDS 25.0%
! AGATGAAATATCTGAAGAAA+AGG + chr7_4:5261627-5261646 Msa1136610:intron 25.0%
! TAAGAAATCTTGTGATGATT+TGG + chr7_4:5261899-5261918 Msa1136610:CDS 25.0%
!!! CTTTTTCGAAACCAAGAAAT+AGG - chr7_4:5261317-5261336 None:intergenic 30.0%
TATCTCAGTCAATTCAAACT+TGG - chr7_4:5261653-5261672 None:intergenic 30.0%
TTCATGGTTGAAGATAAGTT+GGG - chr7_4:5261784-5261803 None:intergenic 30.0%
TTTCATGGTTGAAGATAAGT+TGG - chr7_4:5261785-5261804 None:intergenic 30.0%
AACTTATCTTCAACCATGAA+AGG + chr7_4:5261784-5261803 Msa1136610:CDS 30.0%
ACTTATCTTCAACCATGAAA+GGG + chr7_4:5261785-5261804 Msa1136610:CDS 30.0%
ACATCTTCATATCAAAGTGT+TGG - chr7_4:5261815-5261834 None:intergenic 30.0%
AACACTTTGATATGAAGATG+TGG + chr7_4:5261814-5261833 Msa1136610:CDS 30.0%
ACACTTTGATATGAAGATGT+GGG + chr7_4:5261815-5261834 Msa1136610:CDS 30.0%
! TACTAGTATTGGATGATGTT+TGG + chr7_4:5261976-5261995 Msa1136610:CDS 30.0%
! ACTAGTATTGGATGATGTTT+GGG + chr7_4:5261977-5261996 Msa1136610:CDS 30.0%
!!! CTTTTTCGAAACCAAGAAAT+AGG - chr7_4:5261317-5261336 None:intergenic 30.0%
TATCTCAGTCAATTCAAACT+TGG - chr7_4:5261653-5261672 None:intergenic 30.0%
TTCATGGTTGAAGATAAGTT+GGG - chr7_4:5261784-5261803 None:intergenic 30.0%
TTTCATGGTTGAAGATAAGT+TGG - chr7_4:5261785-5261804 None:intergenic 30.0%
AACTTATCTTCAACCATGAA+AGG + chr7_4:5261784-5261803 Msa1136610:CDS 30.0%
ACTTATCTTCAACCATGAAA+GGG + chr7_4:5261785-5261804 Msa1136610:CDS 30.0%
ACATCTTCATATCAAAGTGT+TGG - chr7_4:5261815-5261834 None:intergenic 30.0%
AACACTTTGATATGAAGATG+TGG + chr7_4:5261814-5261833 Msa1136610:CDS 30.0%
ACACTTTGATATGAAGATGT+GGG + chr7_4:5261815-5261834 Msa1136610:CDS 30.0%
! TACTAGTATTGGATGATGTT+TGG + chr7_4:5261976-5261995 Msa1136610:CDS 30.0%
! ACTAGTATTGGATGATGTTT+GGG + chr7_4:5261977-5261996 Msa1136610:CDS 30.0%
TCACTCATTCAGAAAGAGAT+GGG + chr7_4:5261291-5261310 Msa1136610:CDS 35.0%
ATTCACTGAGAAAGCTATCA+AGG + chr7_4:5261404-5261423 Msa1136610:CDS 35.0%
TTGGAGTACAAAGGATACAA+GGG + chr7_4:5261498-5261517 Msa1136610:CDS 35.0%
!! ATCCAAAACAAGGTGCTTTT+CGG + chr7_4:5261565-5261584 Msa1136610:intron 35.0%
TCTTGAAGTCTTCTTTGTAG+TGG - chr7_4:5261933-5261952 None:intergenic 35.0%
GGGATGATAAACAAGAGAAT+TGG + chr7_4:5261997-5262016 Msa1136610:CDS 35.0%
GCAGAAGTTAAGATCTGTAT+TGG + chr7_4:5262019-5262038 Msa1136610:CDS 35.0%
!! TTAAGATCTGTATTGGCTTG+TGG + chr7_4:5262026-5262045 Msa1136610:CDS 35.0%
TCACTCATTCAGAAAGAGAT+GGG + chr7_4:5261291-5261310 Msa1136610:CDS 35.0%
ATTCACTGAGAAAGCTATCA+AGG + chr7_4:5261404-5261423 Msa1136610:CDS 35.0%
TTGGAGTACAAAGGATACAA+GGG + chr7_4:5261498-5261517 Msa1136610:CDS 35.0%
!! ATCCAAAACAAGGTGCTTTT+CGG + chr7_4:5261565-5261584 Msa1136610:intron 35.0%
TCTTGAAGTCTTCTTTGTAG+TGG - chr7_4:5261933-5261952 None:intergenic 35.0%
GGGATGATAAACAAGAGAAT+TGG + chr7_4:5261997-5262016 Msa1136610:CDS 35.0%
GCAGAAGTTAAGATCTGTAT+TGG + chr7_4:5262019-5262038 Msa1136610:CDS 35.0%
!! TTAAGATCTGTATTGGCTTG+TGG + chr7_4:5262026-5262045 Msa1136610:CDS 35.0%
TGAGTGAGCTCAAATTGTCA+AGG - chr7_4:5261278-5261297 None:intergenic 40.0%
CTCACTCATTCAGAAAGAGA+TGG + chr7_4:5261290-5261309 Msa1136610:CDS 40.0%
! AAAGAGATGGGCCTATTTCT+TGG + chr7_4:5261303-5261322 Msa1136610:CDS 40.0%
! AAGCTTGTTCGCTAGAATCA+AGG + chr7_4:5261353-5261372 Msa1136610:CDS 40.0%
! CTCAGTGAATTGTTTCTCCT+CGG - chr7_4:5261394-5261413 None:intergenic 40.0%
CTGAGAAAGCTATCAAGGAT+TGG + chr7_4:5261409-5261428 Msa1136610:CDS 40.0%
GTTGGAGTACAAAGGATACA+AGG + chr7_4:5261497-5261516 Msa1136610:CDS 40.0%
TCCTCTCTTCATCCAAAACA+AGG + chr7_4:5261555-5261574 Msa1136610:intron 40.0%
!!! ACCTTGTTTTGGATGAAGAG+AGG - chr7_4:5261559-5261578 None:intergenic 40.0%
!!! TACCGAAAAGCACCTTGTTT+TGG - chr7_4:5261570-5261589 None:intergenic 40.0%
! AGGTGCTTTTCGGTACAAAA+TGG + chr7_4:5261575-5261594 Msa1136610:intron 40.0%
CGCTAAACCACATCAAGAAA+GGG + chr7_4:5261706-5261725 Msa1136610:intron 40.0%
TAAACCACATCAAGAAAGGG+TGG + chr7_4:5261709-5261728 Msa1136610:intron 40.0%
TGGTCCATCTATCCAATTGT+GGG + chr7_4:5261729-5261748 Msa1136610:intron 40.0%
TAGACCCACAATTGGATAGA+TGG - chr7_4:5261736-5261755 None:intergenic 40.0%
ATCTATCCAATTGTGGGTCT+AGG + chr7_4:5261735-5261754 Msa1136610:intron 40.0%
TATCTTCAACCATGAAAGGG+TGG + chr7_4:5261788-5261807 Msa1136610:CDS 40.0%
AGACTTCAAGAACTGCTTCA+AGG + chr7_4:5261942-5261961 Msa1136610:CDS 40.0%
TGAGTGAGCTCAAATTGTCA+AGG - chr7_4:5261278-5261297 None:intergenic 40.0%
CTCACTCATTCAGAAAGAGA+TGG + chr7_4:5261290-5261309 Msa1136610:CDS 40.0%
! AAAGAGATGGGCCTATTTCT+TGG + chr7_4:5261303-5261322 Msa1136610:CDS 40.0%
! AAGCTTGTTCGCTAGAATCA+AGG + chr7_4:5261353-5261372 Msa1136610:CDS 40.0%
! CTCAGTGAATTGTTTCTCCT+CGG - chr7_4:5261394-5261413 None:intergenic 40.0%
CTGAGAAAGCTATCAAGGAT+TGG + chr7_4:5261409-5261428 Msa1136610:CDS 40.0%
GTTGGAGTACAAAGGATACA+AGG + chr7_4:5261497-5261516 Msa1136610:CDS 40.0%
TCCTCTCTTCATCCAAAACA+AGG + chr7_4:5261555-5261574 Msa1136610:intron 40.0%
!!! ACCTTGTTTTGGATGAAGAG+AGG - chr7_4:5261559-5261578 None:intergenic 40.0%
!!! TACCGAAAAGCACCTTGTTT+TGG - chr7_4:5261570-5261589 None:intergenic 40.0%
! AGGTGCTTTTCGGTACAAAA+TGG + chr7_4:5261575-5261594 Msa1136610:intron 40.0%
CGCTAAACCACATCAAGAAA+GGG + chr7_4:5261706-5261725 Msa1136610:intron 40.0%
TAAACCACATCAAGAAAGGG+TGG + chr7_4:5261709-5261728 Msa1136610:intron 40.0%
TGGTCCATCTATCCAATTGT+GGG + chr7_4:5261729-5261748 Msa1136610:intron 40.0%
TAGACCCACAATTGGATAGA+TGG - chr7_4:5261736-5261755 None:intergenic 40.0%
ATCTATCCAATTGTGGGTCT+AGG + chr7_4:5261735-5261754 Msa1136610:intron 40.0%
TATCTTCAACCATGAAAGGG+TGG + chr7_4:5261788-5261807 Msa1136610:CDS 40.0%
AGACTTCAAGAACTGCTTCA+AGG + chr7_4:5261942-5261961 Msa1136610:CDS 40.0%
GGCTATTCTTGAAGATACCG+AGG + chr7_4:5261374-5261393 Msa1136610:CDS 45.0%
GTACTCCAACTCCAGTACAT+TGG - chr7_4:5261487-5261506 None:intergenic 45.0%
GTACTGGAGTTGGAGTACAA+AGG + chr7_4:5261489-5261508 Msa1136610:CDS 45.0%
GAGTACAAAGGATACAAGGG+TGG + chr7_4:5261501-5261520 Msa1136610:CDS 45.0%
! CTTTTCGGTACAAAATGGCG+AGG + chr7_4:5261580-5261599 Msa1136610:intron 45.0%
GCGCTAAACCACATCAAGAA+AGG + chr7_4:5261705-5261724 Msa1136610:intron 45.0%
GTGGTCCATCTATCCAATTG+TGG + chr7_4:5261728-5261747 Msa1136610:intron 45.0%
TATCCAATTGTGGGTCTAGG+CGG + chr7_4:5261738-5261757 Msa1136610:intron 45.0%
!! AGATCTGTATTGGCTTGTGG+AGG + chr7_4:5262029-5262048 Msa1136610:CDS 45.0%
!! TGTATTGGCTTGTGGAGGAA+AGG + chr7_4:5262034-5262053 Msa1136610:CDS 45.0%
!! GTATTGGCTTGTGGAGGAAA+GGG + chr7_4:5262035-5262054 Msa1136610:CDS 45.0%
GGCTATTCTTGAAGATACCG+AGG + chr7_4:5261374-5261393 Msa1136610:CDS 45.0%
GTACTCCAACTCCAGTACAT+TGG - chr7_4:5261487-5261506 None:intergenic 45.0%
GTACTGGAGTTGGAGTACAA+AGG + chr7_4:5261489-5261508 Msa1136610:CDS 45.0%
GAGTACAAAGGATACAAGGG+TGG + chr7_4:5261501-5261520 Msa1136610:CDS 45.0%
! CTTTTCGGTACAAAATGGCG+AGG + chr7_4:5261580-5261599 Msa1136610:intron 45.0%
GCGCTAAACCACATCAAGAA+AGG + chr7_4:5261705-5261724 Msa1136610:intron 45.0%
GTGGTCCATCTATCCAATTG+TGG + chr7_4:5261728-5261747 Msa1136610:intron 45.0%
TATCCAATTGTGGGTCTAGG+CGG + chr7_4:5261738-5261757 Msa1136610:intron 45.0%
!! AGATCTGTATTGGCTTGTGG+AGG + chr7_4:5262029-5262048 Msa1136610:CDS 45.0%
!! TGTATTGGCTTGTGGAGGAA+AGG + chr7_4:5262034-5262053 Msa1136610:CDS 45.0%
!! GTATTGGCTTGTGGAGGAAA+GGG + chr7_4:5262035-5262054 Msa1136610:CDS 45.0%
! TGCTGCTTACGTCGACATCT+TGG + chr7_4:5261449-5261468 Msa1136610:CDS 50.0%
TGCCACCAATGTACTGGAGT+TGG + chr7_4:5261479-5261498 Msa1136610:CDS 50.0%
CTCCAACTCCAGTACATTGG+TGG - chr7_4:5261484-5261503 None:intergenic 50.0%
!! GGATACAAGGGTGGACTACA+TGG + chr7_4:5261510-5261529 Msa1136610:CDS 50.0%
! AGAGAAGCGTAGTCCTTGAC+TGG + chr7_4:5261683-5261702 Msa1136610:intron 50.0%
ATGTGGTTTAGCGCCAGTCA+AGG - chr7_4:5261699-5261718 None:intergenic 50.0%
TGGACCACCCTTTCTTGATG+TGG - chr7_4:5261716-5261735 None:intergenic 50.0%
! AGTGTTGGACCACCCTTTCA+TGG - chr7_4:5261800-5261819 None:intergenic 50.0%
GACTAGAGCCATCATCGAAG+CGG + chr7_4:5261872-5261891 Msa1136610:CDS 50.0%
! CTTAGTTGCCGCTTCGATGA+TGG - chr7_4:5261883-5261902 None:intergenic 50.0%
! TGCTGCTTACGTCGACATCT+TGG + chr7_4:5261449-5261468 Msa1136610:CDS 50.0%
TGCCACCAATGTACTGGAGT+TGG + chr7_4:5261479-5261498 Msa1136610:CDS 50.0%
CTCCAACTCCAGTACATTGG+TGG - chr7_4:5261484-5261503 None:intergenic 50.0%
!! GGATACAAGGGTGGACTACA+TGG + chr7_4:5261510-5261529 Msa1136610:CDS 50.0%
! AGAGAAGCGTAGTCCTTGAC+TGG + chr7_4:5261683-5261702 Msa1136610:intron 50.0%
ATGTGGTTTAGCGCCAGTCA+AGG - chr7_4:5261699-5261718 None:intergenic 50.0%
TGGACCACCCTTTCTTGATG+TGG - chr7_4:5261716-5261735 None:intergenic 50.0%
! AGTGTTGGACCACCCTTTCA+TGG - chr7_4:5261800-5261819 None:intergenic 50.0%
GACTAGAGCCATCATCGAAG+CGG + chr7_4:5261872-5261891 Msa1136610:CDS 50.0%
! CTTAGTTGCCGCTTCGATGA+TGG - chr7_4:5261883-5261902 None:intergenic 50.0%
CGAGTGTGCCACCAATGTAC+TGG + chr7_4:5261473-5261492 Msa1136610:CDS 55.0%
AGTCCGCCTAGACCCACAAT+TGG - chr7_4:5261744-5261763 None:intergenic 55.0%
! ATTGTGGGTCTAGGCGGACT+TGG + chr7_4:5261744-5261763 Msa1136610:intron 55.0%
CGAGTGTGCCACCAATGTAC+TGG + chr7_4:5261473-5261492 Msa1136610:CDS 55.0%
AGTCCGCCTAGACCCACAAT+TGG - chr7_4:5261744-5261763 None:intergenic 55.0%
! ATTGTGGGTCTAGGCGGACT+TGG + chr7_4:5261744-5261763 Msa1136610:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 5261249 5262064 5261249 ID=Msa1136610;Name=Msa1136610
chr7_4 mRNA 5261249 5262064 5261249 ID=Msa1136610-mRNA-1;Parent=Msa1136610;Name=Msa1136610-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.5|1|1|2|0|196
chr7_4 exon 5261249 5261531 5261249 ID=Msa1136610-mRNA-1:exon:1380;Parent=Msa1136610-mRNA-1
chr7_4 exon 5261757 5262064 5261757 ID=Msa1136610-mRNA-1:exon:1381;Parent=Msa1136610-mRNA-1
chr7_4 CDS 5261249 5261531 5261249 ID=Msa1136610-mRNA-1:cds;Parent=Msa1136610-mRNA-1
chr7_4 CDS 5261757 5262064 5261757 ID=Msa1136610-mRNA-1:cds;Parent=Msa1136610-mRNA-1
Gene Sequence

>Msa1136610

ATGGCTGAAGCTGTGCTTGAACTTGTCCTTGACAATTTGAGCTCACTCATTCAGAAAGAGATGGGCCTATTTCTTGGTTTCGAAAAAGATTTCAAAAGTCTTCAAAGCTTGTTCGCTAGAATCAAGGCTATTCTTGAAGATACCGAGGAGAAACAATTCACTGAGAAAGCTATCAAGGATTGGCTGCTTAAACTTAAAGATGCTGCTTACGTCGACATCTTGGACGAGTGTGCCACCAATGTACTGGAGTTGGAGTACAAAGGATACAAGGGTGGACTACATGGCGGACTTGGAAAAACAACACTTGCCCAACTTATCTTCAACCATGAAAGGGTGGTCCAACACTTTGATATGAAGATGTGGGTGTGTGTTTCAGATGATTTTAGTCTTAAAAGAATGACTAGAGCCATCATCGAAGCGGCAACTAAGAAATCTTGTGATGATTTGGATCTAGAGCCACTACAAAGAAGACTTCAAGAACTGCTTCAAGGAAAAAGATTTTTACTAGTATTGGATGATGTTTGGGATGATAAACAAGAGAATTGGCAGAAGTTAAGATCTGTATTGGCTTGTGGAGGAAAGGGTGCTTGA
Protein sequence

>Msa1136610

MAEAVLELVLDNLSSLIQKEMGLFLGFEKDFKSLQSLFARIKAILEDTEEKQFTEKAIKDWLLKLKDAAYVDILDECATNVLELEYKGYKGGLHGGLGKTTLAQLIFNHERVVQHFDMKMWVCVSDDFSLKRMTRAIIEAATKKSCDDLDLEPLQRRLQELLQGKRFLLVLDDVWDDKQENWQKLRSVLACGGKGA*