AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007860 MtrunA17_Chr5g0414291 82.353 102 18 0 95 196 204 305 4.27e-54 177
Msa1007860 MtrunA17_Chr5g0414291 72.072 111 25 2 1 105 1 111 7.49e-42 145
Msa1007860 MtrunA17_Chr5g0415471 78.431 102 22 0 95 196 202 303 1.73e-52 180
Msa1007860 MtrunA17_Chr5g0415471 65.657 99 28 2 1 93 1 99 6.77e-31 118
Msa1007860 MtrunA17_Chr5g0414231 75.490 102 25 0 95 196 200 301 2.22e-52 175
Msa1007860 MtrunA17_Chr5g0414231 84.946 93 12 1 1 91 1 93 4.65e-43 150
Msa1007860 MtrunA17_Chr5g0415511 76.471 102 24 0 95 196 200 301 1.02e-51 176
Msa1007860 MtrunA17_Chr5g0415511 75.532 94 21 1 1 92 1 94 6.33e-34 127
Msa1007860 MtrunA17_Chr5g0414181 76.471 102 24 0 95 196 199 300 1.93e-50 174
Msa1007860 MtrunA17_Chr5g0414181 64.486 107 36 1 1 105 1 107 8.24e-36 132
Msa1007860 MtrunA17_Chr5g0413821 74.766 107 25 1 1 105 1 107 2.17e-47 154
Msa1007860 MtrunA17_Chr3g0087301 71.569 102 29 0 95 196 200 301 1.12e-46 164
Msa1007860 MtrunA17_Chr3g0087301 58.559 111 44 1 1 109 1 111 6.47e-33 124
Msa1007860 MtrunA17_Chr5g0413811 90.909 77 7 0 120 196 1 77 6.48e-43 152
Msa1007860 MtrunA17_Chr5g0414311 63.725 102 37 0 95 196 204 305 8.18e-42 149
Msa1007860 MtrunA17_Chr5g0414311 65.657 99 28 2 1 93 1 99 2.44e-30 117
Msa1007860 MtrunA17_Chr5g0415491 63.462 104 36 1 95 196 57 160 8.30e-41 137
Msa1007860 MtrunA17_Chr5g0414201 73.529 102 27 0 95 196 200 301 1.14e-40 146
Msa1007860 MtrunA17_Chr5g0414201 65.421 107 35 1 1 105 1 107 9.40e-36 132
Msa1007860 MtrunA17_Chr4g0071021 58.182 110 38 1 95 196 170 279 2.53e-37 134
Msa1007860 MtrunA17_Chr4g0071021 37.500 112 58 2 1 110 1 102 3.76e-14 70.1
Msa1007860 MtrunA17_Chr5g0414171 76.087 92 20 1 1 90 1 92 7.83e-37 132
Msa1007860 MtrunA17_Chr6g0468401 55.769 104 44 1 95 196 188 291 4.71e-35 126
Msa1007860 MtrunA17_Chr6g0468401 47.500 80 40 1 1 78 1 80 3.66e-16 75.5
Msa1007860 MtrunA17_Chr6g0468021 58.824 102 42 0 95 196 189 290 6.92e-34 127
Msa1007860 MtrunA17_Chr6g0468021 48.750 80 39 1 1 78 1 80 7.68e-16 75.1
Msa1007860 MtrunA17_Chr6g0467961 57.843 102 43 0 95 196 189 290 1.03e-33 126
Msa1007860 MtrunA17_Chr6g0467961 43.750 80 43 1 1 78 1 80 1.64e-13 68.2
Msa1007860 MtrunA17_Chr6g0468451 57.843 102 43 0 95 196 189 290 1.17e-33 126
Msa1007860 MtrunA17_Chr6g0468451 50.000 80 38 1 1 78 1 80 3.95e-16 75.9
Msa1007860 MtrunA17_Chr8g0351821 54.082 98 45 0 95 192 189 286 1.41e-33 124
Msa1007860 MtrunA17_Chr8g0351821 46.250 80 41 1 1 78 1 80 1.02e-13 68.9
Msa1007860 MtrunA17_Chr3g0123111 55.769 104 44 1 95 196 188 291 1.43e-33 126
Msa1007860 MtrunA17_Chr3g0123111 45.000 80 42 1 1 78 1 80 1.72e-15 74.3
Msa1007860 MtrunA17_Chr5g0430721 53.636 110 43 1 95 196 228 337 1.57e-33 126
Msa1007860 MtrunA17_Chr5g0430721 39.286 112 56 2 1 110 42 143 2.04e-15 73.9
Msa1007860 MtrunA17_Chr5g0415501 56.637 113 45 2 1 109 1 113 1.80e-33 115
Msa1007860 MtrunA17_Chr6g0468341 55.340 103 46 0 94 196 189 291 2.73e-33 125
Msa1007860 MtrunA17_Chr6g0468341 45.783 83 43 1 1 81 1 83 3.69e-15 73.2
Msa1007860 MtrunA17_Chr5g0416571 51.818 110 45 1 95 196 162 271 2.89e-33 121
Msa1007860 MtrunA17_Chr5g0416571 46.739 92 45 2 1 90 1 90 5.17e-15 72.0
Msa1007860 MtrunA17_Chr5g0430621 53.636 110 43 1 95 196 187 296 6.09e-33 124
Msa1007860 MtrunA17_Chr5g0430621 50.000 80 38 1 1 78 1 80 1.86e-15 73.9
Msa1007860 MtrunA17_Chr1g0155321 51.818 110 45 1 95 196 182 291 1.48e-32 123
Msa1007860 MtrunA17_Chr1g0155321 41.000 100 48 2 1 89 1 100 1.14e-14 71.6
Msa1007860 MtrunA17_Chr5g0430581 51.818 110 45 1 95 196 182 291 2.63e-32 122
Msa1007860 MtrunA17_Chr5g0430581 45.000 80 42 1 1 78 1 80 1.74e-12 65.5
Msa1007860 MtrunA17_Chr5g0430951 52.727 110 44 1 95 196 187 296 4.91e-32 121
Msa1007860 MtrunA17_Chr5g0430951 40.179 112 55 2 1 110 1 102 1.83e-14 71.2
Msa1007860 MtrunA17_Chr5g0429951 52.727 110 44 1 95 196 187 296 6.15e-32 121
Msa1007860 MtrunA17_Chr5g0429951 40.179 112 55 3 1 110 1 102 1.92e-13 68.2
Msa1007860 MtrunA17_Chr5g0430511 50.909 110 46 1 95 196 188 297 6.16e-32 121
Msa1007860 MtrunA17_Chr5g0430511 42.500 80 44 1 1 78 1 80 1.10e-11 63.2
Msa1007860 MtrunA17_Chr6g0468271 54.369 103 47 0 94 196 186 288 6.45e-32 121
Msa1007860 MtrunA17_Chr6g0468271 47.500 80 40 1 1 78 1 80 6.55e-16 75.5
Msa1007860 MtrunA17_Chr5g0429961 49.091 110 48 1 95 196 187 296 6.57e-32 121
Msa1007860 MtrunA17_Chr5g0429961 47.500 80 40 1 1 78 1 80 4.07e-14 70.1
Msa1007860 MtrunA17_Chr4g0027251 51.818 110 45 2 95 196 187 296 8.11e-32 121
Msa1007860 MtrunA17_Chr4g0027251 41.964 112 53 3 1 110 1 102 2.80e-14 70.5
Msa1007860 MtrunA17_Chr5g0430141 51.818 110 45 1 95 196 187 296 8.73e-32 121
Msa1007860 MtrunA17_Chr5g0430141 47.436 78 39 1 1 76 1 78 6.04e-13 66.6
Msa1007860 MtrunA17_Chr5g0430901 51.818 110 45 1 95 196 187 296 9.80e-32 120
Msa1007860 MtrunA17_Chr5g0430901 46.237 93 46 2 1 91 1 91 3.39e-14 70.5
Msa1007860 MtrunA17_Chr7g0244231 50.909 110 46 1 95 196 182 291 1.22e-31 120
Msa1007860 MtrunA17_Chr7g0244231 43.750 80 43 1 1 78 1 80 2.05e-12 65.1
Msa1007860 MtrunA17_Chr6g0468151 52.381 105 48 1 94 196 185 289 1.43e-31 120
Msa1007860 MtrunA17_Chr6g0468151 41.250 80 45 1 1 78 1 80 4.73e-11 61.2
Msa1007860 MtrunA17_Chr5g0430291 50.909 110 46 1 95 196 187 296 1.51e-31 120
Msa1007860 MtrunA17_Chr5g0430291 46.250 80 41 1 1 78 1 80 2.87e-14 70.5
Msa1007860 MtrunA17_Chr5g0431051 50.000 110 47 1 95 196 187 296 4.98e-31 119
Msa1007860 MtrunA17_Chr5g0431051 51.282 78 36 1 1 76 1 78 3.43e-14 70.5
Msa1007860 MtrunA17_Chr1g0155991 53.636 110 43 1 95 196 184 293 5.14e-31 119
Msa1007860 MtrunA17_Chr1g0155991 48.101 79 39 1 1 77 1 79 1.42e-14 71.6
Msa1007860 MtrunA17_Chr6g0467911 52.885 104 47 1 95 196 189 292 9.83e-31 118
Msa1007860 MtrunA17_Chr6g0467911 46.914 81 41 1 1 79 1 81 1.25e-15 74.3
Msa1007860 MtrunA17_Chr5g0430641 50.909 110 46 1 95 196 187 296 1.04e-30 118
Msa1007860 MtrunA17_Chr5g0430641 50.000 78 37 1 1 76 1 78 6.96e-13 66.6
Msa1007860 MtrunA17_Chr6g0468331 53.398 103 48 0 94 196 187 289 2.16e-30 117
Msa1007860 MtrunA17_Chr6g0468331 47.500 80 40 1 1 78 1 80 3.23e-16 76.3
Msa1007860 MtrunA17_Chr6g0470021 53.846 104 46 1 95 196 80 183 2.24e-30 117
Msa1007860 MtrunA17_Chr6g0469991 50.000 104 50 1 95 196 189 292 5.33e-30 113
Msa1007860 MtrunA17_Chr6g0469991 43.750 80 43 1 1 78 1 80 6.93e-13 66.2
Msa1007860 MtrunA17_Chr6g0468101 52.525 99 47 0 95 193 188 286 5.39e-30 115
Msa1007860 MtrunA17_Chr6g0468101 47.500 80 40 1 1 78 1 80 4.43e-16 75.9
Msa1007860 MtrunA17_Chr3g0085931 53.125 96 45 0 94 189 188 283 7.54e-30 115
Msa1007860 MtrunA17_Chr3g0085931 48.750 80 39 1 1 78 1 80 3.15e-14 70.5
Msa1007860 MtrunA17_Chr6g0468121 55.882 102 45 0 95 196 190 291 1.12e-29 115
Msa1007860 MtrunA17_Chr6g0468121 46.250 80 41 1 1 78 1 80 7.59e-15 72.4
Msa1007860 MtrunA17_Chr6g0470081 50.962 104 49 1 95 196 189 292 2.20e-29 114
Msa1007860 MtrunA17_Chr6g0470081 47.500 80 40 1 1 78 1 80 1.80e-15 73.9
Msa1007860 MtrunA17_Chr5g0430441 48.182 110 49 1 95 196 187 296 2.82e-29 114
Msa1007860 MtrunA17_Chr5g0430441 48.718 78 38 1 1 76 1 78 1.73e-12 65.5
Msa1007860 MtrunA17_Chr6g0470011 50.000 104 50 1 95 196 189 292 5.70e-29 113
Msa1007860 MtrunA17_Chr6g0470011 43.750 80 43 1 1 78 1 80 7.70e-13 66.6
Msa1007860 MtrunA17_Chr5g0430331 49.091 110 48 1 95 196 183 292 6.31e-29 111
Msa1007860 MtrunA17_Chr5g0430331 47.500 80 40 1 1 78 1 80 4.92e-14 69.7
Msa1007860 MtrunA17_Chr1g0169901 50.505 99 49 0 95 193 193 291 2.78e-28 110
Msa1007860 MtrunA17_Chr8g0338671 48.544 103 52 1 95 196 82 184 6.82e-28 109
Msa1007860 MtrunA17_Chr8g0352831 49.020 102 52 0 95 196 214 315 6.92e-28 110
Msa1007860 MtrunA17_Chr3g0089431 47.059 102 54 0 95 196 208 309 3.08e-27 107
Msa1007860 MtrunA17_Chr3g0089991 47.059 102 54 0 95 196 208 309 3.97e-27 107
Msa1007860 MtrunA17_Chr3g0089961 47.059 102 54 0 95 196 204 305 5.52e-27 107
Msa1007860 MtrunA17_Chr3g0092241 47.059 102 54 0 95 196 204 305 6.35e-27 107
Msa1007860 MtrunA17_Chr3g0089421 47.059 102 54 0 95 196 203 304 7.54e-27 107
Msa1007860 MtrunA17_Chr7g0218941 50.495 101 49 1 97 196 202 302 1.04e-26 106
Msa1007860 MtrunA17_Chr8g0346831 47.573 103 53 1 95 196 200 302 1.20e-26 106
Msa1007860 MtrunA17_Chr3g0089541 47.059 102 54 0 95 196 208 309 1.21e-26 106
Msa1007860 MtrunA17_Chr3g0090401 44.118 102 57 0 95 196 415 516 1.58e-26 105
Msa1007860 MtrunA17_Chr2g0316291 46.078 102 55 0 95 196 204 305 1.63e-26 105
Msa1007860 MtrunA17_Chr3g0089651 47.059 102 54 0 95 196 208 309 1.69e-26 105
Msa1007860 MtrunA17_Chr8g0337891 47.059 102 54 0 95 196 199 300 1.81e-26 105
Msa1007860 MtrunA17_Chr3g0091061 48.039 102 53 0 95 196 204 305 3.07e-26 105
Msa1007860 MtrunA17_Chr3g0089501 48.039 102 53 0 95 196 202 303 3.28e-26 105
Msa1007860 MtrunA17_Chr3g0089781 47.059 102 54 0 95 196 204 305 3.29e-26 105
Msa1007860 MtrunA17_Chr3g0090141 44.118 102 57 0 95 196 204 305 3.55e-26 105
Msa1007860 MtrunA17_Chr3g0090371 44.118 102 57 0 95 196 204 305 3.76e-26 105
Msa1007860 MtrunA17_Chr3g0089601 48.039 102 53 0 95 196 202 303 3.85e-26 104
Msa1007860 MtrunA17_Chr3g0089761 46.078 102 55 0 95 196 204 305 3.88e-26 104
Msa1007860 MtrunA17_Chr2g0309721 46.078 102 55 0 95 196 204 305 4.15e-26 104
Msa1007860 MtrunA17_Chr3g0089591 46.078 102 55 0 95 196 209 310 5.77e-26 104
Msa1007860 MtrunA17_Chr3g0090651 47.059 102 54 0 95 196 204 305 6.14e-26 104
Msa1007860 MtrunA17_Chr3g0091041 47.059 102 54 0 95 196 204 305 6.17e-26 103
Msa1007860 MtrunA17_Chr3g0087841 44.118 102 57 0 95 196 204 305 6.39e-26 104
Msa1007860 MtrunA17_Chr8g0338621 47.573 103 53 1 95 196 200 302 6.52e-26 103
Msa1007860 MtrunA17_Chr3g0090691 47.059 102 54 0 95 196 204 305 6.90e-26 104
Msa1007860 MtrunA17_Chr5g0417301 46.789 109 50 1 96 196 163 271 6.95e-26 103
Msa1007860 MtrunA17_Chr5g0417301 36.082 97 58 2 1 95 1 95 3.99e-11 61.2
Msa1007860 MtrunA17_Chr1g0189551 43.396 106 56 1 95 196 226 331 8.10e-26 103
Msa1007860 MtrunA17_Chr5g0446611 46.078 102 55 0 95 196 205 306 1.30e-25 103
Msa1007860 MtrunA17_Chr3g0090431 44.118 102 57 0 95 196 76 177 1.49e-25 103
Msa1007860 MtrunA17_Chr3g0091081 47.059 102 54 0 95 196 204 305 1.61e-25 103
Msa1007860 MtrunA17_Chr3g0089251 47.059 102 54 0 95 196 233 334 1.70e-25 103
Msa1007860 MtrunA17_Chr3g0089211 47.059 102 54 0 95 196 251 352 1.80e-25 103
Msa1007860 MtrunA17_Chr8g0338261 45.631 103 55 1 95 196 199 301 2.00e-25 102
Msa1007860 MtrunA17_Chr3g0089471 45.098 102 56 0 95 196 205 306 2.11e-25 102
Msa1007860 MtrunA17_Chr3g0082881 40.881 159 70 5 38 196 155 289 2.59e-25 102
Msa1007860 MtrunA17_Chr2g0282991 46.078 102 55 0 95 196 202 303 3.61e-25 102
Msa1007860 MtrunA17_Chr1g0164611 47.059 102 54 0 95 196 208 309 6.13e-25 101
Msa1007860 MtrunA17_Chr3g0082101 47.059 102 54 0 95 196 208 309 7.27e-25 101
Msa1007860 MtrunA17_Chr8g0352861 45.098 102 56 0 95 196 211 312 7.72e-25 101
Msa1007860 MtrunA17_Chr3g0082891 49.020 102 47 2 95 196 193 289 1.31e-24 100
Msa1007860 MtrunA17_Chr6g0475491 43.269 104 57 1 95 196 200 303 1.54e-24 100
Msa1007860 MtrunA17_Chr6g0471941 48.039 102 53 0 95 196 199 300 1.86e-24 100
Msa1007860 MtrunA17_Chr5g0417251 71.212 66 17 1 133 196 1 66 2.37e-24 99.8
Msa1007860 MtrunA17_Chr8g0338361 46.602 103 54 1 95 196 64 166 2.53e-24 99.4
Msa1007860 MtrunA17_Chr3g0082871 48.039 102 48 1 95 196 193 289 2.97e-24 99.4
Msa1007860 MtrunA17_Chr3g0089811 44.118 102 57 0 95 196 204 305 4.54e-24 99.0
Msa1007860 MtrunA17_Chr8g0392521 43.519 108 50 2 95 193 170 275 5.30e-24 96.7
Msa1007860 MtrunA17_Chr2g0282981 43.137 102 58 0 95 196 202 303 9.52e-24 97.1
Msa1007860 MtrunA17_Chr3g0089931 32.836 201 118 5 5 196 98 290 1.11e-23 97.4
Msa1007860 MtrunA17_Chr7g0248531 47.253 91 48 0 95 185 192 282 1.47e-23 97.4
Msa1007860 MtrunA17_Chr8g0338391 46.078 102 55 0 95 196 198 299 1.72e-23 97.4
Msa1007860 MtrunA17_Chr7g0248411 41.071 112 56 1 95 196 133 244 2.91e-23 94.7
Msa1007860 MtrunA17_Chr4g0025391 42.342 111 53 2 95 196 196 304 4.02e-23 96.3
Msa1007860 MtrunA17_Chr8g0348931 42.857 105 53 1 95 192 204 308 5.19e-23 95.9
Msa1007860 MtrunA17_Chr3g0092261 44.144 111 51 2 95 196 241 349 5.87e-23 95.9
Msa1007860 MtrunA17_Chr3g0085421 40.196 102 60 1 95 196 130 230 1.45e-22 91.3
Msa1007860 MtrunA17_Chr3g0089911 43.243 111 52 2 95 196 196 304 1.99e-22 94.0
Msa1007860 MtrunA17_Chr7g0248431 41.071 112 56 1 95 196 199 310 2.09e-22 94.0
Msa1007860 MtrunA17_Chr1g0164581 44.118 102 57 0 95 196 179 280 2.09e-22 94.4
Msa1007860 MtrunA17_Chr3g0085331 43.137 102 57 1 95 196 206 306 2.29e-22 94.0
Msa1007860 MtrunA17_Chr8g0338251 42.718 103 58 1 95 196 185 287 2.35e-22 94.0
Msa1007860 MtrunA17_Chr3g0082131 44.118 102 57 0 95 196 203 304 2.37e-22 94.0
Msa1007860 MtrunA17_Chr3g0085561 43.137 102 57 1 95 196 175 275 2.46e-22 94.0
Msa1007860 MtrunA17_Chr3g0085801 44.118 102 56 1 95 196 208 308 3.01e-22 93.6
Msa1007860 MtrunA17_Chr7g0248221 41.071 112 56 1 95 196 199 310 3.05e-22 93.6
Msa1007860 MtrunA17_Chr6g0484551 42.574 101 58 0 95 195 206 306 4.45e-22 93.2
Msa1007860 MtrunA17_Chr1g0147141 41.748 103 59 1 95 196 208 310 4.65e-22 93.2
Msa1007860 MtrunA17_Chr4g0010201 47.000 100 48 1 97 196 198 292 5.00e-22 93.2
Msa1007860 MtrunA17_Chr3g0082791 43.689 103 55 2 95 196 206 306 5.70e-22 92.8
Msa1007860 MtrunA17_Chr4g0009781 43.000 100 52 1 97 196 198 292 8.96e-22 92.4
Msa1007860 MtrunA17_Chr3g0087701 42.157 102 58 1 95 196 190 290 9.55e-22 92.4
Msa1007860 MtrunA17_Chr4g0051651 48.454 97 48 1 95 189 224 320 9.73e-22 92.0
Msa1007860 MtrunA17_Chr8g0352211 42.424 99 56 1 99 196 1200 1298 1.24e-21 92.0
Msa1007860 MtrunA17_Chr3g0089871 39.450 109 57 2 95 194 197 305 1.38e-21 91.7
Msa1007860 MtrunA17_Chr3g0085501 42.157 102 58 1 95 196 206 306 1.84e-21 91.3
Msa1007860 MtrunA17_Chr3g0086151 45.631 103 53 2 95 196 188 288 2.14e-21 91.3
Msa1007860 MtrunA17_Chr3g0086181 45.631 103 53 2 95 196 188 288 2.18e-21 91.3
Msa1007860 MtrunA17_Chr2g0299131 38.235 102 63 0 95 196 35 136 2.22e-21 87.4
Msa1007860 MtrunA17_Chr3g0087541 43.137 102 57 1 95 196 206 306 2.34e-21 91.3
Msa1007860 MtrunA17_Chr3g0085451 41.176 102 59 1 95 196 178 278 2.87e-21 90.9
Msa1007860 MtrunA17_Chr7g0257541 38.938 113 58 1 95 196 208 320 4.21e-21 90.5
Msa1007860 MtrunA17_Chr3g0085721 46.591 88 47 0 96 183 178 265 5.29e-21 89.0
Msa1007860 MtrunA17_Chr3g0084031 44.118 102 56 1 95 196 208 308 5.38e-21 90.1
Msa1007860 MtrunA17_Chr7g0257551 38.938 113 56 1 95 194 130 242 1.37e-20 88.2
Msa1007860 MtrunA17_Chr3g0087731 46.067 89 47 1 97 185 1 88 1.65e-20 88.6
Msa1007860 MtrunA17_Chr3g0078361 36.667 120 58 1 95 196 2 121 2.86e-20 87.4
Msa1007860 MtrunA17_Chr6g0456121 39.806 103 61 1 95 196 187 289 2.90e-20 87.8
Msa1007860 MtrunA17_Chr2g0299091 39.216 102 62 0 95 196 172 273 3.78e-20 87.8
Msa1007860 MtrunA17_Chr7g0257221 38.983 118 56 1 95 196 204 321 3.90e-20 87.4
Msa1007860 MtrunA17_Chr3g0087581 47.778 90 46 1 96 185 192 280 4.84e-20 87.4
Msa1007860 MtrunA17_Chr3g0082311 42.718 103 58 1 95 196 204 306 5.80e-20 87.0
Msa1007860 MtrunA17_Chr1g0164631 39.167 120 55 1 95 196 194 313 8.27e-20 86.7
Msa1007860 MtrunA17_Chr3g0082811 44.118 102 52 1 95 196 193 289 8.68e-20 86.7
Msa1007860 MtrunA17_Chr2g0299101 38.235 102 63 0 95 196 198 299 1.40e-19 85.9
Msa1007860 MtrunA17_Chr7g0257191 39.496 119 55 1 95 196 204 322 1.49e-19 85.9
Msa1007860 MtrunA17_Chr3g0086621 42.157 102 58 1 95 196 188 288 2.28e-19 85.5
Msa1007860 MtrunA17_Chr3g0086741 39.604 101 61 0 96 196 215 315 2.79e-19 85.1
Msa1007860 MtrunA17_Chr3g0086221 43.137 102 57 1 95 196 187 287 3.16e-19 85.1
Msa1007860 MtrunA17_Chr3g0082381 40.777 103 60 1 95 196 203 305 3.82e-19 83.6
Msa1007860 MtrunA17_Chr3g0084971 47.059 102 54 0 95 196 194 295 4.10e-19 84.7
Msa1007860 MtrunA17_Chr1g0169951 39.474 114 57 1 95 196 206 319 4.26e-19 84.3
Msa1007860 MtrunA17_Chr3g0085521 39.604 101 61 0 96 196 183 283 5.01e-19 84.3
Msa1007860 MtrunA17_Chr3g0086161 42.157 102 58 1 95 196 188 288 7.01e-19 84.0
Msa1007860 MtrunA17_Chr5g0433771 40.351 114 56 1 95 196 200 313 8.20e-19 83.6
Msa1007860 MtrunA17_Chr3g0082391 39.216 102 62 0 95 196 205 306 8.28e-19 83.6
Msa1007860 MtrunA17_Chr4g0010491 41.837 98 52 1 99 196 200 292 1.04e-18 83.2
Msa1007860 MtrunA17_Chr4g0010251 39.796 98 54 1 99 196 200 292 1.19e-18 83.2
Msa1007860 MtrunA17_Chr7g0257201 38.983 118 56 1 95 196 204 321 1.40e-18 83.2
Msa1007860 MtrunA17_Chr8g0338421 44.872 78 42 1 120 196 1 78 1.63e-18 77.0
Msa1007860 MtrunA17_Chr3g0085551 39.423 104 58 2 96 196 81 182 1.69e-18 82.8
Msa1007860 MtrunA17_Chr4g0010221 40.816 98 53 1 99 196 200 292 1.98e-18 82.8
Msa1007860 MtrunA17_Chr3g0082351 38.235 102 63 0 95 196 203 304 2.24e-18 82.4
Msa1007860 MtrunA17_Chr3g0085651 46.154 91 48 1 95 185 197 286 2.53e-18 82.4
Msa1007860 MtrunA17_Chr3g0086091 43.564 101 54 2 97 196 1 99 2.90e-18 82.0
Msa1007860 MtrunA17_Chr3g0085701 38.614 101 62 0 96 196 189 289 4.91e-18 81.6
Msa1007860 MtrunA17_Chr4g0010261 32.609 184 103 5 29 196 114 292 7.30e-18 80.9
Msa1007860 MtrunA17_Chr2g0299121 36.275 102 65 0 95 196 198 299 7.59e-18 80.9
Msa1007860 MtrunA17_Chr1g0164391 42.424 99 56 1 95 192 204 302 8.57e-18 80.9
Msa1007860 MtrunA17_Chr7g0221481 47.253 91 47 1 95 185 192 281 9.24e-18 80.9
Msa1007860 MtrunA17_Chr2g0308491 40.196 102 61 0 95 196 24 125 1.59e-17 78.2
Msa1007860 MtrunA17_Chr6g0456131 37.374 99 61 1 99 196 193 291 2.71e-17 79.3
Msa1007860 MtrunA17_Chr4g0020501 39.216 102 62 0 95 196 158 259 2.75e-17 79.3
Msa1007860 MtrunA17_Chr3g0084081 44.118 102 56 1 95 196 206 306 1.06e-16 77.8
Msa1007860 MtrunA17_Chr2g0299151 34.314 102 67 0 95 196 185 286 1.30e-16 77.4
Msa1007860 MtrunA17_Chr6g0470061 47.500 80 40 1 1 78 1 80 1.72e-16 73.9
Msa1007860 MtrunA17_Chr6g0468141 39.683 126 54 3 71 196 71 174 2.54e-16 74.7
Msa1007860 MtrunA17_Chr8g0338681 47.368 76 39 1 120 194 1 76 4.26e-16 73.9
Msa1007860 MtrunA17_Chr4g0008461 35.246 122 59 2 95 196 166 287 6.41e-16 75.5
Msa1007860 MtrunA17_Chr3g0113481 39.130 92 56 0 95 186 188 279 6.63e-16 75.1
Msa1007860 MtrunA17_Chr3g0113791 39.130 92 56 0 95 186 188 279 6.78e-16 75.5
Msa1007860 MtrunA17_Chr6g0468191 46.250 80 41 1 1 78 1 80 1.09e-15 73.2
Msa1007860 MtrunA17_Chr3g0101201 39.286 84 49 1 95 176 211 294 1.73e-15 73.9
Msa1007860 MtrunA17_Chr3g0085471 45.098 102 55 1 95 196 206 306 2.27e-15 73.9
Msa1007860 MtrunA17_Chr3g0084051 45.098 102 55 1 95 196 206 306 2.99e-15 73.6
Msa1007860 MtrunA17_Chr3g0085091 43.564 101 56 1 96 196 194 293 3.26e-15 73.2
Msa1007860 MtrunA17_Chr3g0101211 36.585 82 52 0 95 176 2 83 3.82e-15 72.8
Msa1007860 MtrunA17_Chr3g0085131 41.250 80 47 0 96 175 189 268 5.55e-15 72.8
Msa1007860 MtrunA17_Chr3g0083621 31.944 144 69 4 75 196 181 317 1.02e-14 72.0
Msa1007860 MtrunA17_Chr5g0404741 38.947 95 53 2 95 186 198 290 1.38e-14 71.6
Msa1007860 MtrunA17_Chr3g0101231 38.202 89 48 1 95 176 214 302 1.45e-14 71.2
Msa1007860 MtrunA17_Chr3g0085111 37.895 95 56 1 95 189 187 278 1.97e-14 71.2
Msa1007860 MtrunA17_Chr8g0355071 37.895 95 47 4 109 196 27 116 2.77e-14 69.7
Msa1007860 MtrunA17_Chr3g0085171 41.772 79 46 0 96 174 175 253 3.00e-14 70.5
Msa1007860 MtrunA17_Chr3g0083751 33.333 120 58 1 95 192 188 307 4.69e-14 70.1
Msa1007860 MtrunA17_Chr3g0101181 35.955 89 50 1 95 176 213 301 6.07e-14 69.7
Msa1007860 MtrunA17_Chr8g0355411 41.905 105 55 4 95 196 197 298 9.00e-14 68.9
Msa1007860 MtrunA17_Chr3g0084061 41.758 91 53 0 95 185 196 286 2.58e-13 67.8
Msa1007860 MtrunA17_Chr8g0338871 46.032 63 33 1 99 160 84 146 1.30e-12 62.8
Msa1007860 MtrunA17_Chr3g0081361 33.028 109 64 2 95 196 214 320 1.87e-12 65.5
Msa1007860 MtrunA17_Chr1g0189351 31.193 109 66 2 95 196 201 307 2.07e-12 65.1
Msa1007860 MtrunA17_Chr1g0189271 31.193 109 66 2 95 196 41 147 3.17e-12 63.9
Msa1007860 MtrunA17_Chr2g0309151 33.721 86 45 1 120 193 1 86 6.27e-12 63.5
Msa1007860 MtrunA17_Chr3g0101331 31.193 109 66 2 95 196 206 312 6.89e-12 63.5
Msa1007860 MtrunA17_Chr3g0101251 36.471 85 47 1 95 172 205 289 7.15e-12 63.5
Msa1007860 MtrunA17_Chr5g0410001 29.358 109 68 2 95 196 192 298 9.84e-12 63.2
Msa1007860 MtrunA17_Chr3g0101321 32.075 106 66 2 95 196 200 303 1.05e-11 63.2
Msa1007860 MtrunA17_Chr3g0101241 34.091 88 51 1 95 175 182 269 1.11e-11 63.2
Msa1007860 MtrunA17_Chr3g0101271 34.091 88 51 1 95 175 182 269 1.15e-11 63.2
Msa1007860 MtrunA17_Chr3g0100801 33.333 90 53 1 95 177 169 258 1.48e-11 62.8
Msa1007860 MtrunA17_Chr3g0081341 31.579 114 59 4 95 196 269 375 3.19e-11 61.6
Msa1007860 MtrunA17_Chr1g0189501 38.750 80 33 1 96 175 37 100 5.24e-11 57.4
Msa1007860 MtrunA17_Chr3g0081391 31.818 110 64 3 95 196 205 311 6.07e-11 60.8
Msa1007860 MtrunA17_Chr3g0101221 35.955 89 50 1 95 176 208 296 6.60e-11 60.8
Msa1007860 MtrunA17_Chr3g0100851 31.461 89 54 1 95 176 94 182 8.87e-11 60.5
Msa1007860 MtrunA17_Chr3g0080601 35.556 90 51 1 95 177 205 294 9.94e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007860 AT3G14460.1 37.624 101 63 0 96 196 203 303 1.25e-20 89.4
Msa1007860 AT3G14470.1 39.423 104 61 1 95 196 205 308 2.89e-19 85.5
Msa1007860 AT3G14470.2 39.423 104 61 1 95 196 205 308 2.89e-19 85.5
Msa1007860 AT5G48620.6 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT5G48620.1 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT5G48620.4 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT5G48620.2 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT5G48620.3 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT5G48620.5 31.111 180 113 6 17 190 115 289 2.19e-18 82.8
Msa1007860 AT3G50950.2 33.803 142 77 3 55 196 167 291 4.32e-18 82.0
Msa1007860 AT3G50950.1 33.803 142 77 3 55 196 167 291 4.32e-18 82.0
Msa1007860 AT5G43470.3 42.857 98 52 2 95 190 194 289 5.61e-18 81.6
Msa1007860 AT5G43470.2 42.857 98 52 2 95 190 194 289 5.61e-18 81.6
Msa1007860 AT5G43470.4 42.857 98 52 2 95 190 194 289 5.61e-18 81.6
Msa1007860 AT5G43470.1 42.857 98 52 2 95 190 194 289 5.61e-18 81.6
Msa1007860 AT1G59780.1 42.268 97 53 2 95 190 189 283 3.23e-17 79.7
Msa1007860 AT1G59780.2 42.268 97 53 2 95 190 184 278 3.32e-17 79.3
Msa1007860 AT1G53350.1 42.857 98 52 2 95 190 192 287 1.46e-16 77.8
Msa1007860 AT5G35450.2 40.816 98 54 2 95 190 192 287 2.40e-16 77.0
Msa1007860 AT5G35450.1 40.816 98 54 2 95 190 192 287 2.40e-16 77.0
Msa1007860 AT1G10920.1 40.816 98 54 2 95 190 69 164 2.02e-15 74.3
Msa1007860 AT1G10920.2 40.816 98 54 2 95 190 69 164 2.02e-15 74.3
Msa1007860 AT1G10920.4 40.816 98 54 2 95 190 69 164 2.02e-15 74.3
Msa1007860 AT1G59620.2 37.374 99 59 2 95 192 57 153 8.24e-15 72.4
Msa1007860 AT1G58390.1 40.000 100 54 3 95 190 192 289 1.10e-14 72.0
Msa1007860 AT1G58390.2 40.000 100 54 3 95 190 192 289 1.10e-14 72.0
Msa1007860 AT1G58400.1 40.000 100 54 3 95 190 193 290 1.68e-14 71.6
Msa1007860 AT1G58400.3 40.000 100 54 3 95 190 193 290 1.80e-14 71.6
Msa1007860 AT1G58400.2 40.000 100 54 3 95 190 193 290 1.80e-14 71.6
Msa1007860 AT1G59124.1 38.000 100 56 2 95 190 192 289 2.95e-14 70.9
Msa1007860 AT1G58807.2 38.000 100 56 2 95 190 192 289 2.95e-14 70.9
Msa1007860 AT1G59124.2 38.000 100 56 2 95 190 192 289 3.07e-14 70.9
Msa1007860 AT1G58807.1 38.000 100 56 2 95 190 192 289 3.07e-14 70.9
Msa1007860 AT1G59218.1 38.000 100 56 2 95 190 192 289 3.91e-14 70.5
Msa1007860 AT1G59218.2 38.000 100 56 2 95 190 192 289 3.91e-14 70.5
Msa1007860 AT1G59218.3 38.000 100 56 2 95 190 192 289 3.91e-14 70.5
Msa1007860 AT1G58848.1 38.000 100 56 2 95 190 192 289 3.91e-14 70.5
Msa1007860 AT1G58848.2 38.000 100 56 2 95 190 192 289 3.91e-14 70.5
Msa1007860 AT1G58602.2 38.095 105 54 2 95 190 191 293 5.67e-14 70.1
Msa1007860 AT1G58602.1 38.095 105 54 2 95 190 191 293 5.67e-14 70.1
Msa1007860 AT3G46530.1 33.333 108 64 2 95 196 194 299 1.32e-12 66.2
Msa1007860 AT1G58410.1 37.000 100 57 2 95 190 191 288 2.23e-11 62.4
Msa1007860 AT1G58410.4 37.000 100 57 2 95 190 191 288 2.23e-11 62.4
Msa1007860 AT1G58410.2 37.000 100 57 2 95 190 191 288 2.23e-11 62.4
Msa1007860 AT1G58410.3 37.000 100 57 2 95 190 191 288 2.26e-11 62.4

Find 41 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCTTACGTCGACATTT+TGG 0.204619 7_1:+7591501 Msa1007860:CDS
TAAGAAATCTTGTGATGATT+TGG 0.268833 7_1:+7591951 Msa1007860:CDS
AAAGAGATTGGCCTATTTCT+TGG 0.273141 7_1:+7591355 Msa1007860:CDS
TACTAGTATTGGATGATGTT+TGG 0.273326 7_1:+7592028 Msa1007860:CDS
ACTAGTATTGGATGATGTTT+GGG 0.365772 7_1:+7592029 Msa1007860:CDS
AGTGTTGGACCACCCTTTCA+TGG 0.372653 7_1:-7591849 None:intergenic
GCAGAAGTTAAGATCTGTAT+TGG 0.378442 7_1:+7592071 Msa1007860:CDS
CTTAGTTGCCGCTTCGATGA+TGG 0.396750 7_1:-7591932 None:intergenic
GGGATGATAAACAAGAGAAT+TGG 0.396860 7_1:+7592049 Msa1007860:CDS
TTTCATGGTTGAAGATAAGT+TGG 0.416984 7_1:-7591834 None:intergenic
CTCAGTGAATTGTTTCTCCT+CGG 0.443895 7_1:-7591443 None:intergenic
TCACTCATTCAGAAAGAGAT+TGG 0.469904 7_1:+7591343 Msa1007860:CDS
ATTGTGGGTCTAGGCGGACT+TGG 0.471466 7_1:+7591796 Msa1007860:intron
AGACTTCAAGAACTGCTTCA+AGG 0.473423 7_1:+7591994 Msa1007860:CDS
AAGCTTGTTCACTAGAATCA+AGG 0.475633 7_1:+7591405 Msa1007860:CDS
TCTTGAAGTCTTCTTTGTAG+TGG 0.487975 7_1:-7591982 None:intergenic
AACTTATCTTCAACCATGAA+AGG 0.494230 7_1:+7591836 Msa1007860:CDS
ATTCACTGAGAAAGCTATCA+AGG 0.505116 7_1:+7591456 Msa1007860:CDS
CGAGTGTGCCACCAATGTAC+TGG 0.511294 7_1:+7591525 Msa1007860:CDS
TTAAGATCTGTATTGGCTTG+TGG 0.514593 7_1:+7592078 Msa1007860:CDS
CTGAGAAAGCTATCAAGGAT+TGG 0.516780 7_1:+7591461 Msa1007860:CDS
GGATCCAGTGGTGGACTACA+TGG 0.536908 7_1:+7591562 Msa1007860:CDS
TTCATGGTTGAAGATAAGTT+GGG 0.539910 7_1:-7591833 None:intergenic
TGTATTGGCTTGTGGAGGAA+AGG 0.546492 7_1:+7592086 Msa1007860:CDS
ACATCTTCATATCAAAGTGT+TGG 0.563394 7_1:-7591864 None:intergenic
GTATTGGCTTGTGGAGGAAA+GGG 0.569196 7_1:+7592087 Msa1007860:CDS
ACTTATCTTCAACCATGAAA+GGG 0.576199 7_1:+7591837 Msa1007860:CDS
CTCCAACTCCAGTACATTGG+TGG 0.583560 7_1:-7591533 None:intergenic
TGCCACCAATGTACTGGAGT+TGG 0.586074 7_1:+7591531 Msa1007860:CDS
CTTACCATGTAGTCCACCAC+TGG 0.587481 7_1:-7591566 None:intergenic
GTACTCCAACTCCAGTACAT+TGG 0.588509 7_1:-7591536 None:intergenic
AACACTTTGATATGAAGATG+TGG 0.591332 7_1:+7591866 Msa1007860:CDS
GACTAGAGCCATCATCGAAG+CGG 0.620026 7_1:+7591924 Msa1007860:CDS
AGATCTGTATTGGCTTGTGG+AGG 0.620106 7_1:+7592081 Msa1007860:CDS
GGCTATTCTTGAAGATACCG+AGG 0.640221 7_1:+7591426 Msa1007860:CDS
TTGGAGTACAAAGGATCCAG+TGG 0.644156 7_1:+7591550 Msa1007860:CDS
TGAGTGAGCTCAAATTGTCA+AGG 0.644556 7_1:-7591327 None:intergenic
TATCTTCAACCATGAAAGGG+TGG 0.671089 7_1:+7591840 Msa1007860:CDS
GAGTACAAAGGATCCAGTGG+TGG 0.681840 7_1:+7591553 Msa1007860:CDS
GTACTGGAGTTGGAGTACAA+AGG 0.707717 7_1:+7591541 Msa1007860:CDS
ACACTTTGATATGAAGATGT+GGG 0.717498 7_1:+7591867 Msa1007860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGATTTTTACTAGTAT+TGG + chr7_1:7592017-7592036 Msa1007860:CDS 15.0%
!!! AAAAAGATTTTTACTAGTAT+TGG + chr7_1:7592017-7592036 Msa1007860:CDS 15.0%
! AGATGAAATATCTGAAGAAA+AGG + chr7_1:7591679-7591698 Msa1007860:intron 25.0%
! TAAGAAATCTTGTGATGATT+TGG + chr7_1:7591951-7591970 Msa1007860:CDS 25.0%
! AGATGAAATATCTGAAGAAA+AGG + chr7_1:7591679-7591698 Msa1007860:intron 25.0%
! TAAGAAATCTTGTGATGATT+TGG + chr7_1:7591951-7591970 Msa1007860:CDS 25.0%
!!! CTTTTTCGAAACCAAGAAAT+AGG - chr7_1:7591369-7591388 None:intergenic 30.0%
TATCTCAGTCAATTCAAACT+TGG - chr7_1:7591705-7591724 None:intergenic 30.0%
TTCATGGTTGAAGATAAGTT+GGG - chr7_1:7591836-7591855 None:intergenic 30.0%
TTTCATGGTTGAAGATAAGT+TGG - chr7_1:7591837-7591856 None:intergenic 30.0%
AACTTATCTTCAACCATGAA+AGG + chr7_1:7591836-7591855 Msa1007860:CDS 30.0%
ACTTATCTTCAACCATGAAA+GGG + chr7_1:7591837-7591856 Msa1007860:CDS 30.0%
ACATCTTCATATCAAAGTGT+TGG - chr7_1:7591867-7591886 None:intergenic 30.0%
AACACTTTGATATGAAGATG+TGG + chr7_1:7591866-7591885 Msa1007860:CDS 30.0%
ACACTTTGATATGAAGATGT+GGG + chr7_1:7591867-7591886 Msa1007860:CDS 30.0%
! TACTAGTATTGGATGATGTT+TGG + chr7_1:7592028-7592047 Msa1007860:CDS 30.0%
! ACTAGTATTGGATGATGTTT+GGG + chr7_1:7592029-7592048 Msa1007860:CDS 30.0%
!!! CTTTTTCGAAACCAAGAAAT+AGG - chr7_1:7591369-7591388 None:intergenic 30.0%
TATCTCAGTCAATTCAAACT+TGG - chr7_1:7591705-7591724 None:intergenic 30.0%
TTCATGGTTGAAGATAAGTT+GGG - chr7_1:7591836-7591855 None:intergenic 30.0%
TTTCATGGTTGAAGATAAGT+TGG - chr7_1:7591837-7591856 None:intergenic 30.0%
AACTTATCTTCAACCATGAA+AGG + chr7_1:7591836-7591855 Msa1007860:CDS 30.0%
ACTTATCTTCAACCATGAAA+GGG + chr7_1:7591837-7591856 Msa1007860:CDS 30.0%
ACATCTTCATATCAAAGTGT+TGG - chr7_1:7591867-7591886 None:intergenic 30.0%
AACACTTTGATATGAAGATG+TGG + chr7_1:7591866-7591885 Msa1007860:CDS 30.0%
ACACTTTGATATGAAGATGT+GGG + chr7_1:7591867-7591886 Msa1007860:CDS 30.0%
! TACTAGTATTGGATGATGTT+TGG + chr7_1:7592028-7592047 Msa1007860:CDS 30.0%
! ACTAGTATTGGATGATGTTT+GGG + chr7_1:7592029-7592048 Msa1007860:CDS 30.0%
TCACTCATTCAGAAAGAGAT+TGG + chr7_1:7591343-7591362 Msa1007860:CDS 35.0%
!! AAAGAGATTGGCCTATTTCT+TGG + chr7_1:7591355-7591374 Msa1007860:CDS 35.0%
! AAGCTTGTTCACTAGAATCA+AGG + chr7_1:7591405-7591424 Msa1007860:CDS 35.0%
ATTCACTGAGAAAGCTATCA+AGG + chr7_1:7591456-7591475 Msa1007860:CDS 35.0%
!! ATCCAAAACAAGGTGCTTTT+CGG + chr7_1:7591617-7591636 Msa1007860:intron 35.0%
TCTTGAAGTCTTCTTTGTAG+TGG - chr7_1:7591985-7592004 None:intergenic 35.0%
GGGATGATAAACAAGAGAAT+TGG + chr7_1:7592049-7592068 Msa1007860:CDS 35.0%
GCAGAAGTTAAGATCTGTAT+TGG + chr7_1:7592071-7592090 Msa1007860:CDS 35.0%
!! TTAAGATCTGTATTGGCTTG+TGG + chr7_1:7592078-7592097 Msa1007860:CDS 35.0%
TCACTCATTCAGAAAGAGAT+TGG + chr7_1:7591343-7591362 Msa1007860:CDS 35.0%
!! AAAGAGATTGGCCTATTTCT+TGG + chr7_1:7591355-7591374 Msa1007860:CDS 35.0%
! AAGCTTGTTCACTAGAATCA+AGG + chr7_1:7591405-7591424 Msa1007860:CDS 35.0%
ATTCACTGAGAAAGCTATCA+AGG + chr7_1:7591456-7591475 Msa1007860:CDS 35.0%
!! ATCCAAAACAAGGTGCTTTT+CGG + chr7_1:7591617-7591636 Msa1007860:intron 35.0%
TCTTGAAGTCTTCTTTGTAG+TGG - chr7_1:7591985-7592004 None:intergenic 35.0%
GGGATGATAAACAAGAGAAT+TGG + chr7_1:7592049-7592068 Msa1007860:CDS 35.0%
GCAGAAGTTAAGATCTGTAT+TGG + chr7_1:7592071-7592090 Msa1007860:CDS 35.0%
!! TTAAGATCTGTATTGGCTTG+TGG + chr7_1:7592078-7592097 Msa1007860:CDS 35.0%
TGAGTGAGCTCAAATTGTCA+AGG - chr7_1:7591330-7591349 None:intergenic 40.0%
! CTCAGTGAATTGTTTCTCCT+CGG - chr7_1:7591446-7591465 None:intergenic 40.0%
CTGAGAAAGCTATCAAGGAT+TGG + chr7_1:7591461-7591480 Msa1007860:CDS 40.0%
!!! TACCGAAAAGCACCTTGTTT+TGG - chr7_1:7591622-7591641 None:intergenic 40.0%
! AGGTGCTTTTCGGTACAAAA+TGG + chr7_1:7591627-7591646 Msa1007860:intron 40.0%
CGCTAAACCACATCAAGAAA+GGG + chr7_1:7591758-7591777 Msa1007860:intron 40.0%
TAAACCACATCAAGAAAGGG+TGG + chr7_1:7591761-7591780 Msa1007860:intron 40.0%
TGGTCCATCTATCCAATTGT+GGG + chr7_1:7591781-7591800 Msa1007860:intron 40.0%
TAGACCCACAATTGGATAGA+TGG - chr7_1:7591788-7591807 None:intergenic 40.0%
ATCTATCCAATTGTGGGTCT+AGG + chr7_1:7591787-7591806 Msa1007860:intron 40.0%
TATCTTCAACCATGAAAGGG+TGG + chr7_1:7591840-7591859 Msa1007860:CDS 40.0%
AGACTTCAAGAACTGCTTCA+AGG + chr7_1:7591994-7592013 Msa1007860:CDS 40.0%
TGAGTGAGCTCAAATTGTCA+AGG - chr7_1:7591330-7591349 None:intergenic 40.0%
! CTCAGTGAATTGTTTCTCCT+CGG - chr7_1:7591446-7591465 None:intergenic 40.0%
CTGAGAAAGCTATCAAGGAT+TGG + chr7_1:7591461-7591480 Msa1007860:CDS 40.0%
!!! TACCGAAAAGCACCTTGTTT+TGG - chr7_1:7591622-7591641 None:intergenic 40.0%
! AGGTGCTTTTCGGTACAAAA+TGG + chr7_1:7591627-7591646 Msa1007860:intron 40.0%
CGCTAAACCACATCAAGAAA+GGG + chr7_1:7591758-7591777 Msa1007860:intron 40.0%
TAAACCACATCAAGAAAGGG+TGG + chr7_1:7591761-7591780 Msa1007860:intron 40.0%
TGGTCCATCTATCCAATTGT+GGG + chr7_1:7591781-7591800 Msa1007860:intron 40.0%
TAGACCCACAATTGGATAGA+TGG - chr7_1:7591788-7591807 None:intergenic 40.0%
ATCTATCCAATTGTGGGTCT+AGG + chr7_1:7591787-7591806 Msa1007860:intron 40.0%
TATCTTCAACCATGAAAGGG+TGG + chr7_1:7591840-7591859 Msa1007860:CDS 40.0%
AGACTTCAAGAACTGCTTCA+AGG + chr7_1:7591994-7592013 Msa1007860:CDS 40.0%
GGCTATTCTTGAAGATACCG+AGG + chr7_1:7591426-7591445 Msa1007860:CDS 45.0%
!! TGCTGCTTACGTCGACATTT+TGG + chr7_1:7591501-7591520 Msa1007860:CDS 45.0%
GTACTCCAACTCCAGTACAT+TGG - chr7_1:7591539-7591558 None:intergenic 45.0%
GTACTGGAGTTGGAGTACAA+AGG + chr7_1:7591541-7591560 Msa1007860:CDS 45.0%
TTGGAGTACAAAGGATCCAG+TGG + chr7_1:7591550-7591569 Msa1007860:CDS 45.0%
TCCTCTCGTCATCCAAAACA+AGG + chr7_1:7591607-7591626 Msa1007860:intron 45.0%
!!! ACCTTGTTTTGGATGACGAG+AGG - chr7_1:7591611-7591630 None:intergenic 45.0%
! CTTTTCGGTACAAAATGGCG+AGG + chr7_1:7591632-7591651 Msa1007860:intron 45.0%
GCGCTAAACCACATCAAGAA+AGG + chr7_1:7591757-7591776 Msa1007860:intron 45.0%
GTGGTCCATCTATCCAATTG+TGG + chr7_1:7591780-7591799 Msa1007860:intron 45.0%
TATCCAATTGTGGGTCTAGG+CGG + chr7_1:7591790-7591809 Msa1007860:intron 45.0%
!! AGATCTGTATTGGCTTGTGG+AGG + chr7_1:7592081-7592100 Msa1007860:CDS 45.0%
!! TGTATTGGCTTGTGGAGGAA+AGG + chr7_1:7592086-7592105 Msa1007860:CDS 45.0%
!! GTATTGGCTTGTGGAGGAAA+GGG + chr7_1:7592087-7592106 Msa1007860:CDS 45.0%
GGCTATTCTTGAAGATACCG+AGG + chr7_1:7591426-7591445 Msa1007860:CDS 45.0%
!! TGCTGCTTACGTCGACATTT+TGG + chr7_1:7591501-7591520 Msa1007860:CDS 45.0%
GTACTCCAACTCCAGTACAT+TGG - chr7_1:7591539-7591558 None:intergenic 45.0%
GTACTGGAGTTGGAGTACAA+AGG + chr7_1:7591541-7591560 Msa1007860:CDS 45.0%
TTGGAGTACAAAGGATCCAG+TGG + chr7_1:7591550-7591569 Msa1007860:CDS 45.0%
TCCTCTCGTCATCCAAAACA+AGG + chr7_1:7591607-7591626 Msa1007860:intron 45.0%
!!! ACCTTGTTTTGGATGACGAG+AGG - chr7_1:7591611-7591630 None:intergenic 45.0%
! CTTTTCGGTACAAAATGGCG+AGG + chr7_1:7591632-7591651 Msa1007860:intron 45.0%
GCGCTAAACCACATCAAGAA+AGG + chr7_1:7591757-7591776 Msa1007860:intron 45.0%
GTGGTCCATCTATCCAATTG+TGG + chr7_1:7591780-7591799 Msa1007860:intron 45.0%
TATCCAATTGTGGGTCTAGG+CGG + chr7_1:7591790-7591809 Msa1007860:intron 45.0%
!! AGATCTGTATTGGCTTGTGG+AGG + chr7_1:7592081-7592100 Msa1007860:CDS 45.0%
!! TGTATTGGCTTGTGGAGGAA+AGG + chr7_1:7592086-7592105 Msa1007860:CDS 45.0%
!! GTATTGGCTTGTGGAGGAAA+GGG + chr7_1:7592087-7592106 Msa1007860:CDS 45.0%
TGCCACCAATGTACTGGAGT+TGG + chr7_1:7591531-7591550 Msa1007860:CDS 50.0%
CTCCAACTCCAGTACATTGG+TGG - chr7_1:7591536-7591555 None:intergenic 50.0%
GAGTACAAAGGATCCAGTGG+TGG + chr7_1:7591553-7591572 Msa1007860:CDS 50.0%
CTTACCATGTAGTCCACCAC+TGG - chr7_1:7591569-7591588 None:intergenic 50.0%
! AGAGAAGCGTAGTCCTTGAC+TGG + chr7_1:7591735-7591754 Msa1007860:intron 50.0%
ATGTGGTTTAGCGCCAGTCA+AGG - chr7_1:7591751-7591770 None:intergenic 50.0%
TGGACCACCCTTTCTTGATG+TGG - chr7_1:7591768-7591787 None:intergenic 50.0%
! AGTGTTGGACCACCCTTTCA+TGG - chr7_1:7591852-7591871 None:intergenic 50.0%
GACTAGAGCCATCATCGAAG+CGG + chr7_1:7591924-7591943 Msa1007860:CDS 50.0%
! CTTAGTTGCCGCTTCGATGA+TGG - chr7_1:7591935-7591954 None:intergenic 50.0%
TGCCACCAATGTACTGGAGT+TGG + chr7_1:7591531-7591550 Msa1007860:CDS 50.0%
CTCCAACTCCAGTACATTGG+TGG - chr7_1:7591536-7591555 None:intergenic 50.0%
GAGTACAAAGGATCCAGTGG+TGG + chr7_1:7591553-7591572 Msa1007860:CDS 50.0%
CTTACCATGTAGTCCACCAC+TGG - chr7_1:7591569-7591588 None:intergenic 50.0%
! AGAGAAGCGTAGTCCTTGAC+TGG + chr7_1:7591735-7591754 Msa1007860:intron 50.0%
ATGTGGTTTAGCGCCAGTCA+AGG - chr7_1:7591751-7591770 None:intergenic 50.0%
TGGACCACCCTTTCTTGATG+TGG - chr7_1:7591768-7591787 None:intergenic 50.0%
! AGTGTTGGACCACCCTTTCA+TGG - chr7_1:7591852-7591871 None:intergenic 50.0%
GACTAGAGCCATCATCGAAG+CGG + chr7_1:7591924-7591943 Msa1007860:CDS 50.0%
! CTTAGTTGCCGCTTCGATGA+TGG - chr7_1:7591935-7591954 None:intergenic 50.0%
CGAGTGTGCCACCAATGTAC+TGG + chr7_1:7591525-7591544 Msa1007860:CDS 55.0%
!! GGATCCAGTGGTGGACTACA+TGG + chr7_1:7591562-7591581 Msa1007860:CDS 55.0%
AGTCCGCCTAGACCCACAAT+TGG - chr7_1:7591796-7591815 None:intergenic 55.0%
! ATTGTGGGTCTAGGCGGACT+TGG + chr7_1:7591796-7591815 Msa1007860:intron 55.0%
CGAGTGTGCCACCAATGTAC+TGG + chr7_1:7591525-7591544 Msa1007860:CDS 55.0%
!! GGATCCAGTGGTGGACTACA+TGG + chr7_1:7591562-7591581 Msa1007860:CDS 55.0%
AGTCCGCCTAGACCCACAAT+TGG - chr7_1:7591796-7591815 None:intergenic 55.0%
! ATTGTGGGTCTAGGCGGACT+TGG + chr7_1:7591796-7591815 Msa1007860:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7591301 7592116 7591301 ID=Msa1007860;Name=Msa1007860
chr7_1 mRNA 7591301 7592116 7591301 ID=Msa1007860-mRNA-1;Parent=Msa1007860;Name=Msa1007860-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.5|1|1|2|0|196
chr7_1 exon 7591301 7591583 7591301 ID=Msa1007860-mRNA-1:exon:2307;Parent=Msa1007860-mRNA-1
chr7_1 exon 7591809 7592116 7591809 ID=Msa1007860-mRNA-1:exon:2308;Parent=Msa1007860-mRNA-1
chr7_1 CDS 7591301 7591583 7591301 ID=Msa1007860-mRNA-1:cds;Parent=Msa1007860-mRNA-1
chr7_1 CDS 7591809 7592116 7591809 ID=Msa1007860-mRNA-1:cds;Parent=Msa1007860-mRNA-1
Gene Sequence

>Msa1007860

ATGGCTGAAGCTGTGCTTGAACTTGTCCTTGACAATTTGAGCTCACTCATTCAGAAAGAGATTGGCCTATTTCTTGGTTTCGAAAAAGATTTCAAAAGTCTTCAAAGCTTGTTCACTAGAATCAAGGCTATTCTTGAAGATACCGAGGAGAAACAATTCACTGAGAAAGCTATCAAGGATTGGCTGCTTAAGCTTAAAGATGCTGCTTACGTCGACATTTTGGACGAGTGTGCCACCAATGTACTGGAGTTGGAGTACAAAGGATCCAGTGGTGGACTACATGGCGGACTTGGAAAAACAACACTTGCCCAACTTATCTTCAACCATGAAAGGGTGGTCCAACACTTTGATATGAAGATGTGGGTGTGTGTTTCAGATGATTTTAGTCTTAAAAGAATGACTAGAGCCATCATCGAAGCGGCAACTAAGAAATCTTGTGATGATTTGGATCTAGAGCCACTACAAAGAAGACTTCAAGAACTGCTTCAAGGAAAAAGATTTTTACTAGTATTGGATGATGTTTGGGATGATAAACAAGAGAATTGGCAGAAGTTAAGATCTGTATTGGCTTGTGGAGGAAAGGGTGCTTGA
Protein sequence

>Msa1007860

MAEAVLELVLDNLSSLIQKEIGLFLGFEKDFKSLQSLFTRIKAILEDTEEKQFTEKAIKDWLLKLKDAAYVDILDECATNVLELEYKGSSGGLHGGLGKTTLAQLIFNHERVVQHFDMKMWVCVSDDFSLKRMTRAIIEAATKKSCDDLDLEPLQRRLQELLQGKRFLLVLDDVWDDKQENWQKLRSVLACGGKGA*