Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136950 | MBA0715229.1 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 2.04e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136950 | sp|Q1H595|LSM2_ARATH | 92.391 | 92 | 7 | 0 | 3 | 94 | 2 | 93 | 2.01e-59 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136950 | A0A7J8ZVA2 | 97.872 | 94 | 2 | 0 | 1 | 94 | 1 | 94 | 9.72e-62 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1136920 | Msa1136950 | 0.879194 | 1.520159e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136950 | MtrunA17_Chr7g0259511 | 100.000 | 92 | 0 | 0 | 3 | 94 | 2 | 93 | 1.02e-64 | 189 |
| Msa1136950 | MtrunA17_Chr7g0266371 | 98.913 | 92 | 1 | 0 | 3 | 94 | 2 | 93 | 2.29e-64 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136950 | AT1G03330.1 | 92.391 | 92 | 7 | 0 | 3 | 94 | 2 | 93 | 2.04e-60 | 179 |
Find 35 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATGTCAAAACGTATA+TGG | 0.306358 | 7_4:-5652007 | Msa1136950:three_prime_UTR |
| TTTCTCGTACTTCAAAGATT+TGG | 0.349513 | 7_4:-5654969 | Msa1136950:CDS |
| CGAGCTTGATGTTAAGGTAT+TGG | 0.368384 | 7_4:+5654879 | None:intergenic |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.436743 | 7_4:-5652241 | Msa1136950:CDS |
| TCATCGTATGAGAATTCTAT+AGG | 0.439692 | 7_4:-5652189 | Msa1136950:three_prime_UTR |
| TTTGCTTTCAGCTTTCTGTA+AGG | 0.472959 | 7_4:-5652341 | Msa1136950:intron |
| CATATGTTGTGCATAATACT+TGG | 0.478134 | 7_4:+5651973 | None:intergenic |
| AGTTCAATGTCCACACCTTC+CGG | 0.482532 | 7_4:+5652273 | None:intergenic |
| CTCGTACTTCAAAGATTTGG+TGG | 0.482905 | 7_4:-5654966 | Msa1136950:CDS |
| CGTATGAGAATTCTATAGGC+TGG | 0.489218 | 7_4:-5652185 | Msa1136950:three_prime_UTR |
| TTAATAGATGCATAAGGGGA+AGG | 0.521914 | 7_4:+5652030 | None:intergenic |
| TAATAGATGCATAAGGGGAA+GGG | 0.542987 | 7_4:+5652031 | None:intergenic |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.548759 | 7_4:-5652242 | Msa1136950:CDS |
| GAGATACGTACAATTGCCTC+CGG | 0.563468 | 7_4:-5652292 | Msa1136950:CDS |
| AGAATGCAAGGTTCCTCTGA+TGG | 0.563659 | 7_4:+5654907 | None:intergenic |
| CATAAGGGGAAGGGAAACGC+AGG | 0.566273 | 7_4:+5652040 | None:intergenic |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7_4:+5652239 | None:intergenic |
| TCGTACTTCAAAGATTTGGT+GGG | 0.591251 | 7_4:-5654965 | Msa1136950:CDS |
| CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7_4:-5652316 | Msa1136950:CDS |
| GAGAGAGAGATACCATGTGA+GGG | 0.599690 | 7_4:+5654825 | None:intergenic |
| TTTGGTGGGAAGAGAAGTGA+CGG | 0.599876 | 7_4:-5654951 | Msa1136950:CDS |
| ACAATTGCCTCCGGAAGGTG+TGG | 0.601280 | 7_4:-5652283 | Msa1136950:CDS |
| AGAGAGAGAGATACCATGTG+AGG | 0.605635 | 7_4:+5654824 | None:intergenic |
| TACGTACAATTGCCTCCGGA+AGG | 0.608966 | 7_4:-5652288 | Msa1136950:CDS |
| TTAACAAAATCAACCACCCC+GGG | 0.612233 | 7_4:+5652224 | None:intergenic |
| GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7_4:-5652324 | Msa1136950:CDS |
| GTATTGGTCAACAGAATGCA+AGG | 0.624995 | 7_4:+5654895 | None:intergenic |
| AACTGTTGCATGATGCCACA+AGG | 0.651942 | 7_4:-5652254 | Msa1136950:CDS |
| ATTAACAAAATCAACCACCC+CGG | 0.669310 | 7_4:+5652223 | None:intergenic |
| TCAATGTCCACACCTTCCGG+AGG | 0.686185 | 7_4:+5652276 | None:intergenic |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7_4:-5652237 | Msa1136950:CDS |
| AAGAACGATTTAGCCATCAG+AGG | 0.696928 | 7_4:-5654920 | Msa1136950:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.716300 | 7_4:-5652240 | Msa1136950:CDS |
| TCAAGACAGATACCCTCACA+TGG | 0.727038 | 7_4:-5654837 | Msa1136950:intron |
| ATAAGGGGAAGGGAAACGCA+GGG | 0.742911 | 7_4:+5652041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATTTATTTTATACTTA+TGG | - | chr7_4:5653609-5653628 | Msa1136950:intron | 10.0% |
| !! | ATATATATTATATTTGACAA+TGG | - | chr7_4:5653648-5653667 | Msa1136950:intron | 10.0% |
| !! | ATGTAAAATATCATAAATGA+AGG | - | chr7_4:5653490-5653509 | Msa1136950:intron | 15.0% |
| !!! | TGTTTTATATCTTCTTTTAA+TGG | + | chr7_4:5654260-5654279 | None:intergenic | 15.0% |
| !! | TGGTGTATTAAAATTCAATT+CGG | - | chr7_4:5652290-5652309 | Msa1136950:CDS | 20.0% |
| !! | TTAAAATTCAATTCGGAATT+TGG | - | chr7_4:5652297-5652316 | Msa1136950:CDS | 20.0% |
| !! | TAAAATTCAATTCGGAATTT+GGG | - | chr7_4:5652298-5652317 | Msa1136950:CDS | 20.0% |
| !!! | TACAAATTTTCACTAACTAA+TGG | + | chr7_4:5652561-5652580 | None:intergenic | 20.0% |
| !! | CAGGTTAAAATAATGATATA+TGG | - | chr7_4:5652711-5652730 | Msa1136950:intron | 20.0% |
| !! | AATAATGATATATGGACATT+AGG | - | chr7_4:5652719-5652738 | Msa1136950:intron | 20.0% |
| !!! | ATAAATGAGAGATTTTACAA+GGG | - | chr7_4:5654363-5654382 | Msa1136950:intron | 20.0% |
| !!! | TTCTTTTAATAGATGCATAA+GGG | + | chr7_4:5654945-5654964 | None:intergenic | 20.0% |
| !!! | TTTCTTTTAATAGATGCATA+AGG | + | chr7_4:5654946-5654965 | None:intergenic | 20.0% |
| !!! | TTGAATTTTAATACACCATC+CGG | + | chr7_4:5652288-5652307 | None:intergenic | 25.0% |
| !! | ATTTCATCTGATTGTGATTT+TGG | - | chr7_4:5652326-5652345 | Msa1136950:CDS | 25.0% |
| !!! | TTTGGCTTTATGATTATATG+TGG | - | chr7_4:5652344-5652363 | Msa1136950:intron | 25.0% |
| !!! | CGTTTTTTCATATTCAATTG+AGG | - | chr7_4:5652424-5652443 | Msa1136950:intron | 25.0% |
| ! | TCAGTTATTCAATGAATCTA+AGG | - | chr7_4:5652485-5652504 | Msa1136950:intron | 25.0% |
| ! | TAACATAACATAAGAAGGAA+AGG | + | chr7_4:5652677-5652696 | None:intergenic | 25.0% |
| ! | ACAGATAACATAACATAAGA+AGG | + | chr7_4:5652682-5652701 | None:intergenic | 25.0% |
| !! | ATTTGTGTCATTAACATTTG+TGG | - | chr7_4:5652750-5652769 | Msa1136950:intron | 25.0% |
| ! | AATGTGGATGAAGTAAAAAA+TGG | + | chr7_4:5653236-5653255 | None:intergenic | 25.0% |
| ! | AAGTGTCTAAAAAAAGAGTT+CGG | - | chr7_4:5653764-5653783 | Msa1136950:intron | 25.0% |
| ! | TATAAACAAATTCACGAACA+AGG | + | chr7_4:5654162-5654181 | None:intergenic | 25.0% |
| !!! | ATAATAGCTTTGTGTTTGAA+TGG | - | chr7_4:5654187-5654206 | Msa1136950:intron | 25.0% |
| !!! | TAATAGCTTTGTGTTTGAAT+GGG | - | chr7_4:5654188-5654207 | Msa1136950:intron | 25.0% |
| ! | TGTAGAATCAGAGTATATAT+AGG | - | chr7_4:5654306-5654325 | Msa1136950:intron | 25.0% |
| !! | GATAAATGAGAGATTTTACA+AGG | - | chr7_4:5654362-5654381 | Msa1136950:intron | 25.0% |
| !!! | TACAATTGTATGCTATTTTC+TGG | - | chr7_4:5654504-5654523 | Msa1136950:intron | 25.0% |
| !! | TCTTTTAATAGATGCATAAG+GGG | + | chr7_4:5654944-5654963 | None:intergenic | 25.0% |
| ! | AAGAAATGTCAAAACGTATA+TGG | - | chr7_4:5654960-5654979 | Msa1136950:CDS | 25.0% |
| TTTCTCGTACTTCAAAGATT+TGG | - | chr7_4:5651998-5652017 | Msa1136950:three_prime_UTR | 30.0% | |
| ! | ATCCAATGAATTTCAAGTAC+CGG | - | chr7_4:5652266-5652285 | Msa1136950:CDS | 30.0% |
| TGTTATCTGTGTAATTTCAC+AGG | - | chr7_4:5652692-5652711 | Msa1136950:intron | 30.0% | |
| GTATCCTAATATCACCATAT+TGG | + | chr7_4:5652797-5652816 | None:intergenic | 30.0% | |
| TAGCTAAAACACCTTCAAAA+TGG | + | chr7_4:5652830-5652849 | None:intergenic | 30.0% | |
| CAAAAGATGTTGAAATTCGT+TGG | - | chr7_4:5652961-5652980 | Msa1136950:intron | 30.0% | |
| TTGAAATTCGTTGGTGTATT+GGG | - | chr7_4:5652970-5652989 | Msa1136950:intron | 30.0% | |
| ! | TAATAGAACCATGCATCTTT+TGG | - | chr7_4:5652997-5653016 | Msa1136950:intron | 30.0% |
| AATAAGAACCAAAAGATGCA+TGG | + | chr7_4:5653008-5653027 | None:intergenic | 30.0% | |
| !!! | TCTTATTTTGTGTCAGCATT+AGG | - | chr7_4:5653021-5653040 | Msa1136950:intron | 30.0% |
| TCATTTCTTATTAACAGACG+AGG | + | chr7_4:5653100-5653119 | None:intergenic | 30.0% | |
| ATGTTTATGTATGTCATGTG+TGG | - | chr7_4:5653131-5653150 | Msa1136950:intron | 30.0% | |
| TGTTTATGTATGTCATGTGT+GGG | - | chr7_4:5653132-5653151 | Msa1136950:intron | 30.0% | |
| TTGTAGCATAGATCAAACTA+AGG | + | chr7_4:5653184-5653203 | None:intergenic | 30.0% | |
| TTGATCTATGCTACAAGTTA+CGG | - | chr7_4:5653188-5653207 | Msa1136950:intron | 30.0% | |
| GCTATAATTGTGCCAATTTA+CGG | + | chr7_4:5653276-5653295 | None:intergenic | 30.0% | |
| !! | TTGTGATTTTGATCCTATGT+AGG | - | chr7_4:5653457-5653476 | Msa1136950:intron | 30.0% |
| TGAGTTTCAGATCAATGAAA+CGG | - | chr7_4:5653806-5653825 | Msa1136950:intron | 30.0% | |
| TAGTTTAGTAAGCCTAATGA+AGG | + | chr7_4:5654024-5654043 | None:intergenic | 30.0% | |
| ACCAGAAAACCTAAAATTCA+GGG | + | chr7_4:5654234-5654253 | None:intergenic | 30.0% | |
| TACCAGAAAACCTAAAATTC+AGG | + | chr7_4:5654235-5654254 | None:intergenic | 30.0% | |
| !!! | TGAATTTTAGGTTTTCTGGT+AGG | - | chr7_4:5654234-5654253 | Msa1136950:intron | 30.0% |
| !!! | AGAATTTACCTTTGTTTTCG+AGG | - | chr7_4:5654404-5654423 | Msa1136950:intron | 30.0% |
| !!! | GAATTTACCTTTGTTTTCGA+GGG | - | chr7_4:5654405-5654424 | Msa1136950:intron | 30.0% |
| !!! | ATTGTATGCTATTTTCTGGA+TGG | - | chr7_4:5654508-5654527 | Msa1136950:intron | 30.0% |
| TTCTGGATGGTTGTTATATT+TGG | - | chr7_4:5654521-5654540 | Msa1136950:intron | 30.0% | |
| TCATCGTATGAGAATTCTAT+AGG | - | chr7_4:5654778-5654797 | Msa1136950:intron | 30.0% | |
| AATAGTTTCTTCTCTTAAGC+AGG | + | chr7_4:5654829-5654848 | None:intergenic | 30.0% | |
| CATATGTTGTGCATAATACT+TGG | + | chr7_4:5654997-5655016 | None:intergenic | 30.0% | |
| ! | TCGTACTTCAAAGATTTGGT+GGG | - | chr7_4:5652002-5652021 | Msa1136950:three_prime_UTR | 35.0% |
| !! | TGTTTTCGAGCTTGATGTTA+AGG | + | chr7_4:5652097-5652116 | None:intergenic | 35.0% |
| ATCCGGTACTTGAAATTCAT+TGG | + | chr7_4:5652271-5652290 | None:intergenic | 35.0% | |
| !! | AATGAATTTCAAGTACCGGA+TGG | - | chr7_4:5652270-5652289 | Msa1136950:CDS | 35.0% |
| CTTAAATACGAGACCTAAGA+GGG | + | chr7_4:5652395-5652414 | None:intergenic | 35.0% | |
| TCTTAAATACGAGACCTAAG+AGG | + | chr7_4:5652396-5652415 | None:intergenic | 35.0% | |
| ! | TCATATTCAATTGAGGTGTC+TGG | - | chr7_4:5652431-5652450 | Msa1136950:intron | 35.0% |
| ! | CTTTTGCTTATACATGAGAC+CGG | - | chr7_4:5652514-5652533 | Msa1136950:intron | 35.0% |
| AATTTGTAAGTGAACGCTAG+CGG | - | chr7_4:5652573-5652592 | Msa1136950:intron | 35.0% | |
| AAAACACCTTCAAAATGGAG+TGG | + | chr7_4:5652825-5652844 | None:intergenic | 35.0% | |
| GTTGAAATTCGTTGGTGTAT+TGG | - | chr7_4:5652969-5652988 | Msa1136950:intron | 35.0% | |
| TTTCTTATTAACAGACGAGG+AGG | + | chr7_4:5653097-5653116 | None:intergenic | 35.0% | |
| TCATCCACATTTAATCAGAG+TGG | - | chr7_4:5653245-5653264 | Msa1136950:intron | 35.0% | |
| TAATTGTGCCAATTTACGGA+TGG | + | chr7_4:5653272-5653291 | None:intergenic | 35.0% | |
| GCACAATTATAGCAACAGTA+GGG | - | chr7_4:5653283-5653302 | Msa1136950:intron | 35.0% | |
| CACAATTATAGCAACAGTAG+GGG | - | chr7_4:5653284-5653303 | Msa1136950:intron | 35.0% | |
| ACAATTATAGCAACAGTAGG+GGG | - | chr7_4:5653285-5653304 | Msa1136950:intron | 35.0% | |
| AACAGTTATAACATATCCCG+AGG | - | chr7_4:5653392-5653411 | Msa1136950:intron | 35.0% | |
| ACAGTTATAACATATCCCGA+GGG | - | chr7_4:5653393-5653412 | Msa1136950:intron | 35.0% | |
| TTGGAATTTGGGAACTATGT+TGG | - | chr7_4:5653417-5653436 | Msa1136950:intron | 35.0% | |
| TGGAATTTGGGAACTATGTT+GGG | - | chr7_4:5653418-5653437 | Msa1136950:intron | 35.0% | |
| TAAATGAAGGTAGCGTAACA+TGG | - | chr7_4:5653503-5653522 | Msa1136950:intron | 35.0% | |
| AAATGAAGGTAGCGTAACAT+GGG | - | chr7_4:5653504-5653523 | Msa1136950:intron | 35.0% | |
| TGAGAAAAAGAGTCAGATGA+AGG | - | chr7_4:5653923-5653942 | Msa1136950:intron | 35.0% | |
| TAGTGCAGTTAACCTTCATT+AGG | - | chr7_4:5654009-5654028 | Msa1136950:intron | 35.0% | |
| GAATTGCCATCGAAATTTGA+AGG | + | chr7_4:5654063-5654082 | None:intergenic | 35.0% | |
| TATGTAGCAATCTACTCTGT+AGG | - | chr7_4:5654097-5654116 | Msa1136950:intron | 35.0% | |
| ! | TAATTGTGGCCCTGAATTTT+AGG | - | chr7_4:5654222-5654241 | Msa1136950:intron | 35.0% |
| !! | TTTACAAGGGTATTTGCACA+AGG | - | chr7_4:5654376-5654395 | Msa1136950:intron | 35.0% |
| TTGTACTCTTTGCATGCAAA+AGG | + | chr7_4:5654489-5654508 | None:intergenic | 35.0% | |
| ! | AATCAAATCTGAAGCAAGCT+AGG | + | chr7_4:5654570-5654589 | None:intergenic | 35.0% |
| TTTGCTTTCAGCTTTCTGTA+AGG | - | chr7_4:5654626-5654645 | Msa1136950:intron | 35.0% | |
| ATTAACAAAATCAACCACCC+CGG | + | chr7_4:5654747-5654766 | None:intergenic | 35.0% | |
| TAATAGATGCATAAGGGGAA+GGG | + | chr7_4:5654939-5654958 | None:intergenic | 35.0% | |
| TTAATAGATGCATAAGGGGA+AGG | + | chr7_4:5654940-5654959 | None:intergenic | 35.0% | |
| CTCGTACTTCAAAGATTTGG+TGG | - | chr7_4:5652001-5652020 | Msa1136950:three_prime_UTR | 40.0% | |
| AAGAACGATTTAGCCATCAG+AGG | - | chr7_4:5652047-5652066 | Msa1136950:three_prime_UTR | 40.0% | |
| ! | GTATTGGTCAACAGAATGCA+AGG | + | chr7_4:5652075-5652094 | None:intergenic | 40.0% |
| CGAGCTTGATGTTAAGGTAT+TGG | + | chr7_4:5652091-5652110 | None:intergenic | 40.0% | |
| TCTCTCTCTCTTTCTCTCTA+GGG | - | chr7_4:5652207-5652226 | Msa1136950:three_prime_UTR | 40.0% | |
| GCTGTTATAACTACCCTCTT+AGG | - | chr7_4:5652379-5652398 | Msa1136950:intron | 40.0% | |
| ! | GTTTTATCCGTCCATTCCAA+AGG | - | chr7_4:5652640-5652659 | Msa1136950:intron | 40.0% |
| ! | ACAAGACTTCACCTTTGGAA+TGG | + | chr7_4:5652654-5652673 | None:intergenic | 40.0% |
| AAAGGACAAGACTTCACCTT+TGG | + | chr7_4:5652659-5652678 | None:intergenic | 40.0% | |
| TAACATTTGTGGTGTGATGC+TGG | - | chr7_4:5652761-5652780 | Msa1136950:intron | 40.0% | |
| GAGGCCAATATGGTGATATT+AGG | - | chr7_4:5652790-5652809 | Msa1136950:intron | 40.0% | |
| CCTTCAAAATGGAGTGGAAA+AGG | + | chr7_4:5652819-5652838 | None:intergenic | 40.0% | |
| ! | CCTTTTCCACTCCATTTTGA+AGG | - | chr7_4:5652816-5652835 | Msa1136950:intron | 40.0% |
| ! | CATTAGGTTCCACGTTTTCA+TGG | - | chr7_4:5653037-5653056 | Msa1136950:intron | 40.0% |
| ACACACTAACCATGAAAACG+TGG | + | chr7_4:5653049-5653068 | None:intergenic | 40.0% | |
| TGGTCCACTCTGATTAAATG+TGG | + | chr7_4:5653252-5653271 | None:intergenic | 40.0% | |
| GGCACAATTATAGCAACAGT+AGG | - | chr7_4:5653282-5653301 | Msa1136950:intron | 40.0% | |
| !! | GGGGTATTTGTGTTTTGAGT+GGG | - | chr7_4:5653304-5653323 | Msa1136950:intron | 40.0% |
| !! | GGGTATTTGTGTTTTGAGTG+GGG | - | chr7_4:5653305-5653324 | Msa1136950:intron | 40.0% |
| ! | TGGGAACTATGTTGGGATTT+TGG | - | chr7_4:5653425-5653444 | Msa1136950:intron | 40.0% |
| TGATCCTATGTAGGATCAGA+AGG | - | chr7_4:5653466-5653485 | Msa1136950:intron | 40.0% | |
| CATTCCTTCTGATCCTACAT+AGG | + | chr7_4:5653473-5653492 | None:intergenic | 40.0% | |
| AGTTCACAAGAGAAGCTAAG+AGG | - | chr7_4:5653709-5653728 | Msa1136950:intron | 40.0% | |
| GTTCACAAGAGAAGCTAAGA+GGG | - | chr7_4:5653710-5653729 | Msa1136950:intron | 40.0% | |
| TCAATGAAACGGAGTAAGAG+AGG | - | chr7_4:5653817-5653836 | Msa1136950:intron | 40.0% | |
| ! | AGATGAAGGATTGTTGTTGC+TGG | - | chr7_4:5653937-5653956 | Msa1136950:intron | 40.0% |
| ACTGCTCCTTCAAATTTCGA+TGG | - | chr7_4:5654054-5654073 | Msa1136950:intron | 40.0% | |
| GCTACATAGAAAAGATCAGC+TGG | + | chr7_4:5654085-5654104 | None:intergenic | 40.0% | |
| TTCAGGGCCACAATTATTGT+GGG | + | chr7_4:5654218-5654237 | None:intergenic | 40.0% | |
| ATTCAGGGCCACAATTATTG+TGG | + | chr7_4:5654219-5654238 | None:intergenic | 40.0% | |
| !!! | GCCCTGAATTTTAGGTTTTC+TGG | - | chr7_4:5654230-5654249 | Msa1136950:intron | 40.0% |
| TTTATCATAGCAGCATGCAC+AGG | + | chr7_4:5654339-5654358 | None:intergenic | 40.0% | |
| TTCAGTTCCCTCGAAAACAA+AGG | + | chr7_4:5654415-5654434 | None:intergenic | 40.0% | |
| TTAACAAAATCAACCACCCC+GGG | + | chr7_4:5654746-5654765 | None:intergenic | 40.0% | |
| CGTATGAGAATTCTATAGGC+TGG | - | chr7_4:5654782-5654801 | Msa1136950:intron | 40.0% | |
| TTTGGTGGGAAGAGAAGTGA+CGG | - | chr7_4:5652016-5652035 | Msa1136950:three_prime_UTR | 45.0% | |
| AGAATGCAAGGTTCCTCTGA+TGG | + | chr7_4:5652063-5652082 | None:intergenic | 45.0% | |
| TCAAGACAGATACCCTCACA+TGG | - | chr7_4:5652130-5652149 | Msa1136950:intron | 45.0% | |
| GAGAGAGAGATACCATGTGA+GGG | + | chr7_4:5652145-5652164 | None:intergenic | 45.0% | |
| AGAGAGAGAGATACCATGTG+AGG | + | chr7_4:5652146-5652165 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTTTCTCTCT+AGG | - | chr7_4:5652206-5652225 | Msa1136950:three_prime_UTR | 45.0% | |
| TTGCTTATACATGAGACCGG+AGG | - | chr7_4:5652517-5652536 | Msa1136950:intron | 45.0% | |
| TGCTTATACATGAGACCGGA+GGG | - | chr7_4:5652518-5652537 | Msa1136950:intron | 45.0% | |
| ACACTACTAGATACTCCCTC+CGG | + | chr7_4:5652536-5652555 | None:intergenic | 45.0% | |
| !! | GACTTCACCTTTGGAATGGA+CGG | + | chr7_4:5652650-5652669 | None:intergenic | 45.0% |
| AGAGTGGACCATCCGTAAAT+TGG | - | chr7_4:5653261-5653280 | Msa1136950:intron | 45.0% | |
| !!! | GGGGGTATTTGTGTTTTGAG+TGG | - | chr7_4:5653303-5653322 | Msa1136950:intron | 45.0% |
| TATAACATATCCCGAGGGCT+TGG | - | chr7_4:5653398-5653417 | Msa1136950:intron | 45.0% | |
| ACAAGAGAAGCTAAGAGGGA+AGG | - | chr7_4:5653714-5653733 | Msa1136950:intron | 45.0% | |
| AAGCTAAGAGGGAAGGTAGT+TGG | - | chr7_4:5653721-5653740 | Msa1136950:intron | 45.0% | |
| TAAGAGGGAAGGTAGTTGGA+AGG | - | chr7_4:5653725-5653744 | Msa1136950:intron | 45.0% | |
| ! | GACACTTGAGACTTTTCTCC+AGG | + | chr7_4:5653751-5653770 | None:intergenic | 45.0% |
| GAGAAAGACAATGAGTCGAG+AGG | - | chr7_4:5653851-5653870 | Msa1136950:intron | 45.0% | |
| TCAGGGCCACAATTATTGTG+GGG | + | chr7_4:5654217-5654236 | None:intergenic | 45.0% | |
| ! | GCATGCAAAAGGTGATGATG+AGG | + | chr7_4:5654478-5654497 | None:intergenic | 45.0% |
| ! | AATCTGAAGCAAGCTAGGTC+TGG | + | chr7_4:5654565-5654584 | None:intergenic | 45.0% |
| GTAAGGAACTGCTTCATCAG+AGG | - | chr7_4:5654643-5654662 | Msa1136950:intron | 45.0% | |
| GAGATACGTACAATTGCCTC+CGG | - | chr7_4:5654675-5654694 | Msa1136950:intron | 45.0% | |
| AGTTCAATGTCCACACCTTC+CGG | + | chr7_4:5654697-5654716 | None:intergenic | 45.0% | |
| AACTGTTGCATGATGCCACA+AGG | - | chr7_4:5654713-5654732 | Msa1136950:intron | 45.0% | |
| CATTTGTGGTGTGATGCTGG+AGG | - | chr7_4:5652764-5652783 | Msa1136950:intron | 50.0% | |
| TATCCCGAGGGCTTGGAATT+TGG | - | chr7_4:5653405-5653424 | Msa1136950:intron | 50.0% | |
| ATCCCGAGGGCTTGGAATTT+GGG | - | chr7_4:5653406-5653425 | Msa1136950:intron | 50.0% | |
| TTCCCAAATTCCAAGCCCTC+GGG | + | chr7_4:5653411-5653430 | None:intergenic | 50.0% | |
| GTTCCCAAATTCCAAGCCCT+CGG | + | chr7_4:5653412-5653431 | None:intergenic | 50.0% | |
| AAACGGAGTAAGAGAGGCTG+AGG | - | chr7_4:5653823-5653842 | Msa1136950:intron | 50.0% | |
| AACGGAGTAAGAGAGGCTGA+GGG | - | chr7_4:5653824-5653843 | Msa1136950:intron | 50.0% | |
| AGGCATGAACAGAGAGGTTG+AGG | - | chr7_4:5653871-5653890 | Msa1136950:intron | 50.0% | |
| GGCATGAACAGAGAGGTTGA+GGG | - | chr7_4:5653872-5653891 | Msa1136950:intron | 50.0% | |
| TTGTTGCTGGCATGTGTAGC+TGG | - | chr7_4:5653950-5653969 | Msa1136950:intron | 50.0% | |
| GTGTAGCTGGATGTTGTTGC+TGG | - | chr7_4:5653963-5653982 | Msa1136950:intron | 50.0% | |
| ! | TGCTGGCTGTGTGTCATCAT+CGG | - | chr7_4:5653980-5653999 | Msa1136950:intron | 50.0% |
| GGGATGCCCCACAATAATTG+TGG | - | chr7_4:5654208-5654227 | Msa1136950:intron | 50.0% | |
| CTGCTTCATCAGAGGATCAG+TGG | - | chr7_4:5654651-5654670 | Msa1136950:intron | 50.0% | |
| TACGTACAATTGCCTCCGGA+AGG | - | chr7_4:5654679-5654698 | Msa1136950:intron | 50.0% | |
| ATAAGGGGAAGGGAAACGCA+GGG | + | chr7_4:5654929-5654948 | None:intergenic | 50.0% | |
| ! | CTGGAGGTCTGAGGCCAATA+TGG | - | chr7_4:5652780-5652799 | Msa1136950:intron | 55.0% |
| ! | GTCGAGAGGCATGAACAGAG+AGG | - | chr7_4:5653865-5653884 | Msa1136950:intron | 55.0% |
| CAACCCCTCTGTCTGTCTCT+CGG | + | chr7_4:5653898-5653917 | None:intergenic | 55.0% | |
| ACAATTGCCTCCGGAAGGTG+TGG | - | chr7_4:5654684-5654703 | Msa1136950:intron | 55.0% | |
| TCAATGTCCACACCTTCCGG+AGG | + | chr7_4:5654694-5654713 | None:intergenic | 55.0% | |
| ATGCCACAAGGAGAGAAGCC+CGG | - | chr7_4:5654725-5654744 | Msa1136950:intron | 55.0% | |
| CATAAGGGGAAGGGAAACGC+AGG | + | chr7_4:5654930-5654949 | None:intergenic | 55.0% | |
| GGTGTGATGCTGGAGGTCTG+AGG | - | chr7_4:5652771-5652790 | Msa1136950:intron | 60.0% | |
| GGGAAGGTAGTTGGAAGGCC+TGG | - | chr7_4:5653730-5653749 | Msa1136950:intron | 60.0% | |
| AGGGCCGAGAGACAGACAGA+GGG | - | chr7_4:5653891-5653910 | Msa1136950:intron | 60.0% | |
| TGCCACAAGGAGAGAAGCCC+GGG | - | chr7_4:5654726-5654745 | Msa1136950:intron | 60.0% | |
| GAGGGCCGAGAGACAGACAG+AGG | - | chr7_4:5653890-5653909 | Msa1136950:intron | 65.0% | |
| GGGCCGAGAGACAGACAGAG+GGG | - | chr7_4:5653892-5653911 | Msa1136950:intron | 65.0% | |
| GCCACAAGGAGAGAAGCCCG+GGG | - | chr7_4:5654727-5654746 | Msa1136950:intron | 65.0% | |
| ACCCCGGGCTTCTCTCCTTG+TGG | + | chr7_4:5654731-5654750 | None:intergenic | 65.0% | |
| ACAAGGAGAGAAGCCCGGGG+TGG | - | chr7_4:5654730-5654749 | Msa1136950:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 5651931 | 5655058 | 5651931 | ID=Msa1136950;Name=Msa1136950 |
| chr7_4 | mRNA | 5651931 | 5655058 | 5651931 | ID=Msa1136950-mRNA-1;Parent=Msa1136950;Name=Msa1136950-mRNA-1;_AED=0.22;_eAED=0.22;_QI=56|1|1|1|0.5|0.33|3|258|94 |
| chr7_4 | exon | 5651931 | 5652128 | 5651931 | ID=Msa1136950-mRNA-1:exon:1539;Parent=Msa1136950-mRNA-1 |
| chr7_4 | exon | 5652173 | 5652352 | 5652173 | ID=Msa1136950-mRNA-1:exon:1538;Parent=Msa1136950-mRNA-1 |
| chr7_4 | exon | 5654838 | 5655058 | 5654838 | ID=Msa1136950-mRNA-1:exon:1537;Parent=Msa1136950-mRNA-1 |
| chr7_4 | five_prime_UTR | 5655003 | 5655058 | 5655003 | ID=Msa1136950-mRNA-1:five_prime_utr;Parent=Msa1136950-mRNA-1 |
| chr7_4 | CDS | 5654838 | 5655002 | 5654838 | ID=Msa1136950-mRNA-1:cds;Parent=Msa1136950-mRNA-1 |
| chr7_4 | CDS | 5652233 | 5652352 | 5652233 | ID=Msa1136950-mRNA-1:cds;Parent=Msa1136950-mRNA-1 |
| chr7_4 | three_prime_UTR | 5652173 | 5652232 | 5652173 | ID=Msa1136950-mRNA-1:three_prime_utr;Parent=Msa1136950-mRNA-1 |
| chr7_4 | three_prime_UTR | 5651931 | 5652128 | 5651931 | ID=Msa1136950-mRNA-1:three_prime_utr;Parent=Msa1136950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
