Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136920 | XP_013449697.1 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.81e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136920 | sp|Q1H595|LSM2_ARATH | 92.473 | 93 | 7 | 0 | 1 | 93 | 1 | 93 | 2.34e-60 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136920 | A0A5B6YXR9 | 98.925 | 93 | 1 | 0 | 1 | 93 | 22 | 114 | 8.50e-62 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0234440 | Msa1136920 | -0.800351 | 1.501303e-48 | -8.615850e-47 |
| Msa0475500 | Msa1136920 | -0.817049 | 4.034165e-52 | -8.615850e-47 |
| Msa1136920 | Msa1136950 | 0.879194 | 1.520159e-69 | -8.615850e-47 |
| Msa1136920 | Msa1264330 | 0.806148 | 9.467759e-50 | -8.615850e-47 |
| Msa1136920 | Msa1370470 | 0.803652 | 3.147492e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136920 | MtrunA17_Chr7g0259511 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.67e-65 | 192 |
| Msa1136920 | MtrunA17_Chr7g0266371 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 3.71e-65 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136920 | AT1G03330.1 | 92.473 | 93 | 7 | 0 | 1 | 93 | 1 | 93 | 2.38e-61 | 181 |
Find 42 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGATCGTTACCATTT+TGG | 0.144327 | 7_4:-5632504 | None:intergenic |
| AAGAAATGTCAAAACGTATA+TGG | 0.306358 | 7_4:+5635838 | Msa1136920:three_prime_UTR |
| TTTCTCGTACTTCAAAGATT+TGG | 0.349513 | 7_4:+5632604 | Msa1136920:CDS |
| CGAGCTTGATGTTAAGGTAT+TGG | 0.368384 | 7_4:-5632694 | None:intergenic |
| AGCTTAAATCGTTGAACCCT+TGG | 0.368834 | 7_4:+5632404 | Msa1136920:five_prime_UTR |
| GTTCTCAGCCATATCCAAAA+TGG | 0.376359 | 7_4:+5632490 | Msa1136920:exon |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.436743 | 7_4:+5635604 | Msa1136920:CDS |
| TCATCGTATGAGAATTCTAT+AGG | 0.439692 | 7_4:+5635656 | Msa1136920:three_prime_UTR |
| TTTGCTTTCAGCTTTCTGTA+AGG | 0.472959 | 7_4:+5635504 | Msa1136920:intron |
| CATATGTTGTGCATAATACT+TGG | 0.478134 | 7_4:-5635872 | None:intergenic |
| AGTTCAATGTCCACACCTTC+CGG | 0.482532 | 7_4:-5635572 | None:intergenic |
| CTCGTACTTCAAAGATTTGG+TGG | 0.482905 | 7_4:+5632607 | Msa1136920:CDS |
| CGTATGAGAATTCTATAGGC+TGG | 0.489218 | 7_4:+5635660 | Msa1136920:three_prime_UTR |
| GGATATGGCTGAGAACTAGC+AGG | 0.509593 | 7_4:-5632483 | None:intergenic |
| TTAATAGATGCATAAGGGGA+AGG | 0.521914 | 7_4:-5635815 | None:intergenic |
| TAATAGATGCATAAGGGGAA+GGG | 0.542987 | 7_4:-5635814 | None:intergenic |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.548759 | 7_4:+5635603 | Msa1136920:CDS |
| AGCTTAGCAGGGAGAAACCA+AGG | 0.558174 | 7_4:-5632421 | None:intergenic |
| GAGATACGTACAATTGCCTC+CGG | 0.563468 | 7_4:+5635553 | Msa1136920:CDS |
| AGAATGCAAGGTTCCTCTGA+TGG | 0.563659 | 7_4:-5632666 | None:intergenic |
| CATAAGGGGAAGGGAAACGC+AGG | 0.566273 | 7_4:-5635805 | None:intergenic |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7_4:-5635606 | None:intergenic |
| TCGTACTTCAAAGATTTGGT+GGG | 0.591251 | 7_4:+5632608 | Msa1136920:CDS |
| CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7_4:+5635529 | Msa1136920:CDS |
| GAGAGAGAGATACCATGTGA+GGG | 0.599690 | 7_4:-5632748 | None:intergenic |
| TTTGGTGGGAAGAGAAGTGA+CGG | 0.599876 | 7_4:+5632622 | Msa1136920:CDS |
| ACAATTGCCTCCGGAAGGTG+TGG | 0.601280 | 7_4:+5635562 | Msa1136920:CDS |
| AGAGAGAGAGATACCATGTG+AGG | 0.605635 | 7_4:-5632749 | None:intergenic |
| TACGTACAATTGCCTCCGGA+AGG | 0.608966 | 7_4:+5635557 | Msa1136920:CDS |
| TTAACAAAATCAACCACCCC+GGG | 0.612233 | 7_4:-5635621 | None:intergenic |
| GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7_4:+5635521 | Msa1136920:CDS |
| GTATTGGTCAACAGAATGCA+AGG | 0.624995 | 7_4:-5632678 | None:intergenic |
| GATATGGCTGAGAACTAGCA+GGG | 0.651090 | 7_4:-5632482 | None:intergenic |
| AACTGTTGCATGATGCCACA+AGG | 0.651942 | 7_4:+5635591 | Msa1136920:CDS |
| GCTTAGCAGGGAGAAACCAA+GGG | 0.659675 | 7_4:-5632420 | None:intergenic |
| ATTAACAAAATCAACCACCC+CGG | 0.669310 | 7_4:-5635622 | None:intergenic |
| TCAATGTCCACACCTTCCGG+AGG | 0.686185 | 7_4:-5635569 | None:intergenic |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7_4:+5635608 | Msa1136920:CDS |
| AAGAACGATTTAGCCATCAG+AGG | 0.696928 | 7_4:+5632653 | Msa1136920:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.716300 | 7_4:+5635605 | Msa1136920:CDS |
| TCAAGACAGATACCCTCACA+TGG | 0.727038 | 7_4:+5632736 | Msa1136920:CDS |
| ATAAGGGGAAGGGAAACGCA+GGG | 0.742911 | 7_4:-5635804 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATTTATTTTATACTTA+TGG | + | chr7_4:5634487-5634506 | Msa1136920:intron | 10.0% |
| !! | ATATATATTATATTTGACAA+TGG | + | chr7_4:5634526-5634545 | Msa1136920:intron | 10.0% |
| !! | AAAAAAATGAGAAATCAAAA+AGG | - | chr7_4:5632534-5632553 | None:intergenic | 15.0% |
| !! | ATGTAAAATATCATAAATGA+AGG | + | chr7_4:5634103-5634122 | Msa1136920:intron | 15.0% |
| !!! | TGTTTTATATCTTCTTTTAA+TGG | - | chr7_4:5635138-5635157 | None:intergenic | 15.0% |
| !! | TGGTGTATTAAAATTCAATT+CGG | + | chr7_4:5632872-5632891 | Msa1136920:intron | 20.0% |
| !! | TTAAAATTCAATTCGGAATT+TGG | + | chr7_4:5632879-5632898 | Msa1136920:intron | 20.0% |
| !! | TAAAATTCAATTCGGAATTT+GGG | + | chr7_4:5632880-5632899 | Msa1136920:intron | 20.0% |
| !!! | TACAAATTTTCACTAACTAA+TGG | - | chr7_4:5633142-5633161 | None:intergenic | 20.0% |
| !! | CAGGTTAAAATAATGATATA+TGG | + | chr7_4:5633292-5633311 | Msa1136920:intron | 20.0% |
| !! | AATAATGATATATGGACATT+AGG | + | chr7_4:5633300-5633319 | Msa1136920:intron | 20.0% |
| !!! | ATAAATGAGAGATTTTACAA+GGG | + | chr7_4:5635241-5635260 | Msa1136920:intron | 20.0% |
| !!! | TTCTTTTAATAGATGCATAA+GGG | - | chr7_4:5635823-5635842 | None:intergenic | 20.0% |
| !!! | TTTCTTTTAATAGATGCATA+AGG | - | chr7_4:5635824-5635843 | None:intergenic | 20.0% |
| ! | AAATCAAAAAGGAGAAGAAA+AGG | - | chr7_4:5632523-5632542 | None:intergenic | 25.0% |
| !!! | TTGAATTTTAATACACCATC+CGG | - | chr7_4:5632870-5632889 | None:intergenic | 25.0% |
| !! | ATTTCATCTGATTGTGATTT+TGG | + | chr7_4:5632908-5632927 | Msa1136920:intron | 25.0% |
| !!! | TTTGGCTTTATGATTATATG+TGG | + | chr7_4:5632926-5632945 | Msa1136920:intron | 25.0% |
| !!! | CGTTTTTTCATATTCAATTG+AGG | + | chr7_4:5633005-5633024 | Msa1136920:intron | 25.0% |
| ! | TCAGTTATTCAATGAATCTA+AGG | + | chr7_4:5633066-5633085 | Msa1136920:intron | 25.0% |
| ! | TAACATAACATAAGAAGGAA+AGG | - | chr7_4:5633258-5633277 | None:intergenic | 25.0% |
| ! | ACAGATAACATAACATAAGA+AGG | - | chr7_4:5633263-5633282 | None:intergenic | 25.0% |
| !! | ATTTGTGTCATTAACATTTG+TGG | + | chr7_4:5633331-5633350 | Msa1136920:intron | 25.0% |
| ! | AAATTCGTTGGTGTATTATT+GGG | + | chr7_4:5633583-5633602 | Msa1136920:intron | 25.0% |
| ! | AATGTGGATGAAGTAAAAAA+TGG | - | chr7_4:5633849-5633868 | None:intergenic | 25.0% |
| !! | GTCTTTTTCCTATAAAGTAA+GGG | - | chr7_4:5634277-5634296 | None:intergenic | 25.0% |
| !! | TGTCTTTTTCCTATAAAGTA+AGG | - | chr7_4:5634278-5634297 | None:intergenic | 25.0% |
| ! | AAGTGTCTAAAAAAAGAGTT+CGG | + | chr7_4:5634642-5634661 | Msa1136920:intron | 25.0% |
| ! | TATAAACAAATTCACGAACA+AGG | - | chr7_4:5635040-5635059 | None:intergenic | 25.0% |
| !!! | ATAATAGCTTTGTGTTTGAA+TGG | + | chr7_4:5635065-5635084 | Msa1136920:intron | 25.0% |
| !!! | TAATAGCTTTGTGTTTGAAT+GGG | + | chr7_4:5635066-5635085 | Msa1136920:intron | 25.0% |
| ! | TGTAGAATCAGAGTATATAT+AGG | + | chr7_4:5635184-5635203 | Msa1136920:intron | 25.0% |
| !! | GATAAATGAGAGATTTTACA+AGG | + | chr7_4:5635240-5635259 | Msa1136920:intron | 25.0% |
| !!! | TACAATTGTATGCTATTTTC+TGG | + | chr7_4:5635382-5635401 | Msa1136920:intron | 25.0% |
| !! | TCTTTTAATAGATGCATAAG+GGG | - | chr7_4:5635822-5635841 | None:intergenic | 25.0% |
| ! | AAGAAATGTCAAAACGTATA+TGG | + | chr7_4:5635838-5635857 | Msa1136920:three_prime_UTR | 25.0% |
| TTTCTCGTACTTCAAAGATT+TGG | + | chr7_4:5632604-5632623 | Msa1136920:CDS | 30.0% | |
| ! | ATCCAATGAATTTCAAGTAC+CGG | + | chr7_4:5632848-5632867 | Msa1136920:intron | 30.0% |
| TGTTATCTGTGTAATTTCAC+AGG | + | chr7_4:5633273-5633292 | Msa1136920:intron | 30.0% | |
| GTATCCTAATATCACCATAT+TGG | - | chr7_4:5633378-5633397 | None:intergenic | 30.0% | |
| TAGCTAAAACACCTTCAAAA+TGG | - | chr7_4:5633411-5633430 | None:intergenic | 30.0% | |
| CAAAAGATGTTGAAATTCGT+TGG | + | chr7_4:5633571-5633590 | Msa1136920:intron | 30.0% | |
| GAAATTCGTTGGTGTATTAT+TGG | + | chr7_4:5633582-5633601 | Msa1136920:intron | 30.0% | |
| ! | TAATAGAACCATGCATCTTT+TGG | + | chr7_4:5633610-5633629 | Msa1136920:intron | 30.0% |
| AATAAGAACCAAAAGATGCA+TGG | - | chr7_4:5633621-5633640 | None:intergenic | 30.0% | |
| !!! | TCTTATTTTGTGTCAGCATT+AGG | + | chr7_4:5633634-5633653 | Msa1136920:intron | 30.0% |
| TCATTTCTTATTAACAGACG+AGG | - | chr7_4:5633713-5633732 | None:intergenic | 30.0% | |
| ATGTTTATGTATGTCATGTG+TGG | + | chr7_4:5633744-5633763 | Msa1136920:intron | 30.0% | |
| TGTTTATGTATGTCATGTGT+GGG | + | chr7_4:5633745-5633764 | Msa1136920:intron | 30.0% | |
| TTGTAGCATAGATCAAACTA+AGG | - | chr7_4:5633797-5633816 | None:intergenic | 30.0% | |
| TTGATCTATGCTACAAGTTA+CGG | + | chr7_4:5633801-5633820 | Msa1136920:intron | 30.0% | |
| GCTATAATTGTGCCAATTTA+CGG | - | chr7_4:5633889-5633908 | None:intergenic | 30.0% | |
| !! | TTGTGATTTTGATCCTATGT+AGG | + | chr7_4:5634070-5634089 | Msa1136920:intron | 30.0% |
| TGAGTTTCAGATCAATGAAA+CGG | + | chr7_4:5634684-5634703 | Msa1136920:intron | 30.0% | |
| TAGTTTAGTAAGCCTAATGA+AGG | - | chr7_4:5634902-5634921 | None:intergenic | 30.0% | |
| ACCAGAAAACCTAAAATTCA+GGG | - | chr7_4:5635112-5635131 | None:intergenic | 30.0% | |
| TACCAGAAAACCTAAAATTC+AGG | - | chr7_4:5635113-5635132 | None:intergenic | 30.0% | |
| !!! | TGAATTTTAGGTTTTCTGGT+AGG | + | chr7_4:5635112-5635131 | Msa1136920:intron | 30.0% |
| !!! | AGAATTTACCTTTGTTTTCG+AGG | + | chr7_4:5635282-5635301 | Msa1136920:intron | 30.0% |
| !!! | GAATTTACCTTTGTTTTCGA+GGG | + | chr7_4:5635283-5635302 | Msa1136920:intron | 30.0% |
| !!! | ATTGTATGCTATTTTCTGGA+TGG | + | chr7_4:5635386-5635405 | Msa1136920:intron | 30.0% |
| TTCTGGATGGTTGTTATATT+TGG | + | chr7_4:5635399-5635418 | Msa1136920:intron | 30.0% | |
| TCATCGTATGAGAATTCTAT+AGG | + | chr7_4:5635656-5635675 | Msa1136920:three_prime_UTR | 30.0% | |
| AATAGTTTCTTCTCTTAAGC+AGG | - | chr7_4:5635707-5635726 | None:intergenic | 30.0% | |
| CATATGTTGTGCATAATACT+TGG | - | chr7_4:5635875-5635894 | None:intergenic | 30.0% | |
| ! | GATCGTTACCATTTTGGATA+TGG | - | chr7_4:5632501-5632520 | None:intergenic | 35.0% |
| ! | GAAAAGGATCGTTACCATTT+TGG | - | chr7_4:5632507-5632526 | None:intergenic | 35.0% |
| ! | TCGTACTTCAAAGATTTGGT+GGG | + | chr7_4:5632608-5632627 | Msa1136920:CDS | 35.0% |
| !! | TGTTTTCGAGCTTGATGTTA+AGG | - | chr7_4:5632703-5632722 | None:intergenic | 35.0% |
| ATCCGGTACTTGAAATTCAT+TGG | - | chr7_4:5632853-5632872 | None:intergenic | 35.0% | |
| !! | AATGAATTTCAAGTACCGGA+TGG | + | chr7_4:5632852-5632871 | Msa1136920:intron | 35.0% |
| CTTAAATACGAGACCTAAGA+GGG | - | chr7_4:5632977-5632996 | None:intergenic | 35.0% | |
| TCTTAAATACGAGACCTAAG+AGG | - | chr7_4:5632978-5632997 | None:intergenic | 35.0% | |
| ! | TCATATTCAATTGAGGTGTC+TGG | + | chr7_4:5633012-5633031 | Msa1136920:intron | 35.0% |
| ! | CTTTTGCTTATACATGAGAC+CGG | + | chr7_4:5633095-5633114 | Msa1136920:intron | 35.0% |
| AATTTGTAAGTGAACGCTAG+TGG | + | chr7_4:5633154-5633173 | Msa1136920:intron | 35.0% | |
| AAAACACCTTCAAAATGGAG+TGG | - | chr7_4:5633406-5633425 | None:intergenic | 35.0% | |
| !! | AGTGTCGTTTGTTGATTATG+AGG | + | chr7_4:5633488-5633507 | Msa1136920:intron | 35.0% |
| TTTCTTATTAACAGACGAGG+AGG | - | chr7_4:5633710-5633729 | None:intergenic | 35.0% | |
| TCATCCACATTTAATCAGAG+TGG | + | chr7_4:5633858-5633877 | Msa1136920:intron | 35.0% | |
| TAATTGTGCCAATTTACGGA+TGG | - | chr7_4:5633885-5633904 | None:intergenic | 35.0% | |
| GCACAATTATAGCAACAGTA+GGG | + | chr7_4:5633896-5633915 | Msa1136920:intron | 35.0% | |
| CACAATTATAGCAACAGTAG+GGG | + | chr7_4:5633897-5633916 | Msa1136920:intron | 35.0% | |
| ACAATTATAGCAACAGTAGG+GGG | + | chr7_4:5633898-5633917 | Msa1136920:intron | 35.0% | |
| AACAGTTATAACATATCCCG+AGG | + | chr7_4:5634005-5634024 | Msa1136920:intron | 35.0% | |
| ACAGTTATAACATATCCCGA+GGG | + | chr7_4:5634006-5634025 | Msa1136920:intron | 35.0% | |
| TTGGAATTTGGGAACTATGT+TGG | + | chr7_4:5634030-5634049 | Msa1136920:intron | 35.0% | |
| TGGAATTTGGGAACTATGTT+GGG | + | chr7_4:5634031-5634050 | Msa1136920:intron | 35.0% | |
| TAAATGAAGGTAGCGTAACA+TGG | + | chr7_4:5634116-5634135 | Msa1136920:intron | 35.0% | |
| AAATGAAGGTAGCGTAACAT+GGG | + | chr7_4:5634117-5634136 | Msa1136920:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr7_4:5634411-5634430 | None:intergenic | 35.0% |
| TTCCTTAATCTGTGTGCAAT+GGG | - | chr7_4:5634212-5634231 | None:intergenic | 35.0% | |
| ATTCCTTAATCTGTGTGCAA+TGG | - | chr7_4:5634213-5634232 | None:intergenic | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | + | chr7_4:5634212-5634231 | Msa1136920:intron | 35.0% | |
| CTAAACTGCCCTTACTTTAT+AGG | + | chr7_4:5634266-5634285 | Msa1136920:intron | 35.0% | |
| TTGTGAGAGAAAAGTTGAAG+AGG | + | chr7_4:5634319-5634338 | Msa1136920:intron | 35.0% | |
| TGTGAGAGAAAAGTTGAAGA+GGG | + | chr7_4:5634320-5634339 | Msa1136920:intron | 35.0% | |
| AAAGTTGAAGAGGGTAAAGT+TGG | + | chr7_4:5634329-5634348 | Msa1136920:intron | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr7_4:5634411-5634430 | Msa1136920:intron | 35.0% |
| TGAGAAAAAGAGTCAGATGA+AGG | + | chr7_4:5634801-5634820 | Msa1136920:intron | 35.0% | |
| TAGTGCAGTTAACCTTCATT+AGG | + | chr7_4:5634887-5634906 | Msa1136920:intron | 35.0% | |
| ACTGTTCCTTCAAATTTCGA+TGG | + | chr7_4:5634932-5634951 | Msa1136920:intron | 35.0% | |
| GAATTGCCATCGAAATTTGA+AGG | - | chr7_4:5634941-5634960 | None:intergenic | 35.0% | |
| TATGTAGCAATCTACTCTGT+AGG | + | chr7_4:5634975-5634994 | Msa1136920:intron | 35.0% | |
| ! | TAATTGTGGCCCTGAATTTT+AGG | + | chr7_4:5635100-5635119 | Msa1136920:intron | 35.0% |
| !! | TTTACAAGGGTATTTGCACA+AGG | + | chr7_4:5635254-5635273 | Msa1136920:intron | 35.0% |
| TTGTACTCTTTGCATGCAAA+AGG | - | chr7_4:5635367-5635386 | None:intergenic | 35.0% | |
| ! | AATCAAATCTGAAGCAAGCT+AGG | - | chr7_4:5635448-5635467 | None:intergenic | 35.0% |
| TTTGCTTTCAGCTTTCTGTA+AGG | + | chr7_4:5635504-5635523 | Msa1136920:intron | 35.0% | |
| ATTAACAAAATCAACCACCC+CGG | - | chr7_4:5635625-5635644 | None:intergenic | 35.0% | |
| TAATAGATGCATAAGGGGAA+GGG | - | chr7_4:5635817-5635836 | None:intergenic | 35.0% | |
| TTAATAGATGCATAAGGGGA+AGG | - | chr7_4:5635818-5635837 | None:intergenic | 35.0% | |
| AGCTTAAATCGTTGAACCCT+TGG | + | chr7_4:5632404-5632423 | Msa1136920:five_prime_UTR | 40.0% | |
| GTTCTCAGCCATATCCAAAA+TGG | + | chr7_4:5632490-5632509 | Msa1136920:exon | 40.0% | |
| CTCGTACTTCAAAGATTTGG+TGG | + | chr7_4:5632607-5632626 | Msa1136920:CDS | 40.0% | |
| AAGAACGATTTAGCCATCAG+AGG | + | chr7_4:5632653-5632672 | Msa1136920:CDS | 40.0% | |
| ! | GTATTGGTCAACAGAATGCA+AGG | - | chr7_4:5632681-5632700 | None:intergenic | 40.0% |
| CGAGCTTGATGTTAAGGTAT+TGG | - | chr7_4:5632697-5632716 | None:intergenic | 40.0% | |
| GCTGTTATAACTACCCTCTT+AGG | + | chr7_4:5632961-5632980 | Msa1136920:intron | 40.0% | |
| ! | GTTTTATCCGTCCATTCCAA+AGG | + | chr7_4:5633221-5633240 | Msa1136920:intron | 40.0% |
| ! | ACAAGACTTCACCTTTGGAA+TGG | - | chr7_4:5633235-5633254 | None:intergenic | 40.0% |
| AAAGGACAAGACTTCACCTT+TGG | - | chr7_4:5633240-5633259 | None:intergenic | 40.0% | |
| TAACATTTGTGGTGTGATGC+TGG | + | chr7_4:5633342-5633361 | Msa1136920:intron | 40.0% | |
| GAGGCCAATATGGTGATATT+AGG | + | chr7_4:5633371-5633390 | Msa1136920:intron | 40.0% | |
| CCTTCAAAATGGAGTGGAAA+AGG | - | chr7_4:5633400-5633419 | None:intergenic | 40.0% | |
| ! | CCTTTTCCACTCCATTTTGA+AGG | + | chr7_4:5633397-5633416 | Msa1136920:intron | 40.0% |
| ! | CATTAGGTTCCTCGTTTTCA+TGG | + | chr7_4:5633650-5633669 | Msa1136920:intron | 40.0% |
| ACACACTAACCATGAAAACG+AGG | - | chr7_4:5633662-5633681 | None:intergenic | 40.0% | |
| TGGTCCACTCTGATTAAATG+TGG | - | chr7_4:5633865-5633884 | None:intergenic | 40.0% | |
| GGCACAATTATAGCAACAGT+AGG | + | chr7_4:5633895-5633914 | Msa1136920:intron | 40.0% | |
| !! | GGGGTATTTGTGTTTTGAGT+GGG | + | chr7_4:5633917-5633936 | Msa1136920:intron | 40.0% |
| !! | GGGTATTTGTGTTTTGAGTG+GGG | + | chr7_4:5633918-5633937 | Msa1136920:intron | 40.0% |
| ! | TGGGAACTATGTTGGGATTT+TGG | + | chr7_4:5634038-5634057 | Msa1136920:intron | 40.0% |
| TGATCCTATGTAGGATCAGA+AGG | + | chr7_4:5634079-5634098 | Msa1136920:intron | 40.0% | |
| CATTCCTTCTGATCCTACAT+AGG | - | chr7_4:5634086-5634105 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_4:5634415-5634434 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_4:5634415-5634434 | Msa1136920:intron | 40.0% |
| AGTTCACAAGAGAAGCTAAG+AGG | + | chr7_4:5634587-5634606 | Msa1136920:intron | 40.0% | |
| GTTCACAAGAGAAGCTAAGA+GGG | + | chr7_4:5634588-5634607 | Msa1136920:intron | 40.0% | |
| TCAATGAAACGGAGTAAGAG+AGG | + | chr7_4:5634695-5634714 | Msa1136920:intron | 40.0% | |
| ! | AGATGAAGGATTGTTGTTGC+TGG | + | chr7_4:5634815-5634834 | Msa1136920:intron | 40.0% |
| GCTACATAGAAAAGATCAGC+TGG | - | chr7_4:5634963-5634982 | None:intergenic | 40.0% | |
| TTCAGGGCCACAATTATTGT+GGG | - | chr7_4:5635096-5635115 | None:intergenic | 40.0% | |
| ATTCAGGGCCACAATTATTG+TGG | - | chr7_4:5635097-5635116 | None:intergenic | 40.0% | |
| !!! | GCCCTGAATTTTAGGTTTTC+TGG | + | chr7_4:5635108-5635127 | Msa1136920:intron | 40.0% |
| TTTATCATAGCAGCATGCAC+AGG | - | chr7_4:5635217-5635236 | None:intergenic | 40.0% | |
| TTCAGTTCCCTCGAAAACAA+AGG | - | chr7_4:5635293-5635312 | None:intergenic | 40.0% | |
| TTAACAAAATCAACCACCCC+GGG | - | chr7_4:5635624-5635643 | None:intergenic | 40.0% | |
| CGTATGAGAATTCTATAGGC+TGG | + | chr7_4:5635660-5635679 | Msa1136920:three_prime_UTR | 40.0% | |
| GATATGGCTGAGAACTAGCA+GGG | - | chr7_4:5632485-5632504 | None:intergenic | 45.0% | |
| TTTGGTGGGAAGAGAAGTGA+CGG | + | chr7_4:5632622-5632641 | Msa1136920:CDS | 45.0% | |
| AGAATGCAAGGTTCCTCTGA+TGG | - | chr7_4:5632669-5632688 | None:intergenic | 45.0% | |
| TCAAGACAGATACCCTCACA+TGG | + | chr7_4:5632736-5632755 | Msa1136920:CDS | 45.0% | |
| GAGAGAGAGATACCATGTGA+GGG | - | chr7_4:5632751-5632770 | None:intergenic | 45.0% | |
| AGAGAGAGAGATACCATGTG+AGG | - | chr7_4:5632752-5632771 | None:intergenic | 45.0% | |
| TCTCTCTCTCTCTCTCTCTA+GGG | + | chr7_4:5632789-5632808 | Msa1136920:intron | 45.0% | |
| TTGCTTATACATGAGACCGG+AGG | + | chr7_4:5633098-5633117 | Msa1136920:intron | 45.0% | |
| TGCTTATACATGAGACCGGA+GGG | + | chr7_4:5633099-5633118 | Msa1136920:intron | 45.0% | |
| ACACTACTAGATACTCCCTC+CGG | - | chr7_4:5633117-5633136 | None:intergenic | 45.0% | |
| !! | GACTTCACCTTTGGAATGGA+CGG | - | chr7_4:5633231-5633250 | None:intergenic | 45.0% |
| AGAGTGGACCATCCGTAAAT+TGG | + | chr7_4:5633874-5633893 | Msa1136920:intron | 45.0% | |
| !!! | GGGGGTATTTGTGTTTTGAG+TGG | + | chr7_4:5633916-5633935 | Msa1136920:intron | 45.0% |
| TATAACATATCCCGAGGGCT+TGG | + | chr7_4:5634011-5634030 | Msa1136920:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_4:5634414-5634433 | None:intergenic | 45.0% |
| AGCCCATTGCACACAGATTA+AGG | + | chr7_4:5634207-5634226 | Msa1136920:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_4:5634414-5634433 | Msa1136920:intron | 45.0% |
| ACAAGAGAAGCTAAGAGGGA+AGG | + | chr7_4:5634592-5634611 | Msa1136920:intron | 45.0% | |
| AAGCTAAGAGGGAAGGTAGT+TGG | + | chr7_4:5634599-5634618 | Msa1136920:intron | 45.0% | |
| TAAGAGGGAAGGTAGTTGGA+AGG | + | chr7_4:5634603-5634622 | Msa1136920:intron | 45.0% | |
| ! | GACACTTGAGACTTTTCTCC+AGG | - | chr7_4:5634629-5634648 | None:intergenic | 45.0% |
| GAGAAAGACAATGAGTCGAG+AGG | + | chr7_4:5634729-5634748 | Msa1136920:intron | 45.0% | |
| TCAGGGCCACAATTATTGTG+GGG | - | chr7_4:5635095-5635114 | None:intergenic | 45.0% | |
| ! | GCATGCAAAAGGTGATGATG+AGG | - | chr7_4:5635356-5635375 | None:intergenic | 45.0% |
| ! | AATCTGAAGCAAGCTAGGTC+TGG | - | chr7_4:5635443-5635462 | None:intergenic | 45.0% |
| GTAAGGAACTGCTTCATCAG+AGG | + | chr7_4:5635521-5635540 | Msa1136920:CDS | 45.0% | |
| GAGATACGTACAATTGCCTC+CGG | + | chr7_4:5635553-5635572 | Msa1136920:CDS | 45.0% | |
| AGTTCAATGTCCACACCTTC+CGG | - | chr7_4:5635575-5635594 | None:intergenic | 45.0% | |
| AACTGTTGCATGATGCCACA+AGG | + | chr7_4:5635591-5635610 | Msa1136920:CDS | 45.0% | |
| GCTTAGCAGGGAGAAACCAA+GGG | - | chr7_4:5632423-5632442 | None:intergenic | 50.0% | |
| AGCTTAGCAGGGAGAAACCA+AGG | - | chr7_4:5632424-5632443 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGCTTAGCA+GGG | - | chr7_4:5632435-5632454 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGCTTAGC+AGG | - | chr7_4:5632436-5632455 | None:intergenic | 50.0% | |
| GGATATGGCTGAGAACTAGC+AGG | - | chr7_4:5632486-5632505 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+AGG | + | chr7_4:5632442-5632461 | Msa1136920:five_prime_UTR | 50.0% | |
| CATTTGTGGTGTGATGCTGG+AGG | + | chr7_4:5633345-5633364 | Msa1136920:intron | 50.0% | |
| TATCCCGAGGGCTTGGAATT+TGG | + | chr7_4:5634018-5634037 | Msa1136920:intron | 50.0% | |
| ATCCCGAGGGCTTGGAATTT+GGG | + | chr7_4:5634019-5634038 | Msa1136920:intron | 50.0% | |
| TTCCCAAATTCCAAGCCCTC+GGG | - | chr7_4:5634024-5634043 | None:intergenic | 50.0% | |
| GTTCCCAAATTCCAAGCCCT+CGG | - | chr7_4:5634025-5634044 | None:intergenic | 50.0% | |
| AAACGGAGTAAGAGAGGCTG+AGG | + | chr7_4:5634701-5634720 | Msa1136920:intron | 50.0% | |
| AACGGAGTAAGAGAGGCTGA+GGG | + | chr7_4:5634702-5634721 | Msa1136920:intron | 50.0% | |
| AGGCATGAACAGAGAGGTTG+AGG | + | chr7_4:5634749-5634768 | Msa1136920:intron | 50.0% | |
| GGCATGAACAGAGAGGTTGA+GGG | + | chr7_4:5634750-5634769 | Msa1136920:intron | 50.0% | |
| TTGTTGCTGGCATGTGTAGC+TGG | + | chr7_4:5634828-5634847 | Msa1136920:intron | 50.0% | |
| GTGTAGCTGGATGTTGTTGC+TGG | + | chr7_4:5634841-5634860 | Msa1136920:intron | 50.0% | |
| ! | TGCTGGCTGTGTGTCATCAT+CGG | + | chr7_4:5634858-5634877 | Msa1136920:intron | 50.0% |
| GGGATGCCCCACAATAATTG+TGG | + | chr7_4:5635086-5635105 | Msa1136920:intron | 50.0% | |
| CTGCTTCATCAGAGGATCAG+TGG | + | chr7_4:5635529-5635548 | Msa1136920:CDS | 50.0% | |
| TACGTACAATTGCCTCCGGA+AGG | + | chr7_4:5635557-5635576 | Msa1136920:CDS | 50.0% | |
| ATAAGGGGAAGGGAAACGCA+GGG | - | chr7_4:5635807-5635826 | None:intergenic | 50.0% | |
| ! | CTGGAGGTCTGAGGCCAATA+TGG | + | chr7_4:5633361-5633380 | Msa1136920:intron | 55.0% |
| ! | GTCGAGAGGCATGAACAGAG+AGG | + | chr7_4:5634743-5634762 | Msa1136920:intron | 55.0% |
| CAACCCCTCTGTCTGTCTCT+CGG | - | chr7_4:5634776-5634795 | None:intergenic | 55.0% | |
| ACAATTGCCTCCGGAAGGTG+TGG | + | chr7_4:5635562-5635581 | Msa1136920:CDS | 55.0% | |
| TCAATGTCCACACCTTCCGG+AGG | - | chr7_4:5635572-5635591 | None:intergenic | 55.0% | |
| ATGCCACAAGGAGAGAAGCC+CGG | + | chr7_4:5635603-5635622 | Msa1136920:CDS | 55.0% | |
| CATAAGGGGAAGGGAAACGC+AGG | - | chr7_4:5635808-5635827 | None:intergenic | 55.0% | |
| GGTGTGATGCTGGAGGTCTG+AGG | + | chr7_4:5633352-5633371 | Msa1136920:intron | 60.0% | |
| GGGAAGGTAGTTGGAAGGCC+TGG | + | chr7_4:5634608-5634627 | Msa1136920:intron | 60.0% | |
| AGGGCCGAGAGACAGACAGA+GGG | + | chr7_4:5634769-5634788 | Msa1136920:intron | 60.0% | |
| TGCCACAAGGAGAGAAGCCC+GGG | + | chr7_4:5635604-5635623 | Msa1136920:CDS | 60.0% | |
| GAGGGCCGAGAGACAGACAG+AGG | + | chr7_4:5634768-5634787 | Msa1136920:intron | 65.0% | |
| GGGCCGAGAGACAGACAGAG+GGG | + | chr7_4:5634770-5634789 | Msa1136920:intron | 65.0% | |
| GCCACAAGGAGAGAAGCCCG+GGG | + | chr7_4:5635605-5635624 | Msa1136920:CDS | 65.0% | |
| ACCCCGGGCTTCTCTCCTTG+TGG | - | chr7_4:5635609-5635628 | None:intergenic | 65.0% | |
| ACAAGGAGAGAAGCCCGGGG+TGG | + | chr7_4:5635608-5635627 | Msa1136920:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 5632400 | 5635936 | 5632400 | ID=Msa1136920;Name=Msa1136920 |
| chr7_4 | mRNA | 5632400 | 5635936 | 5632400 | ID=Msa1136920-mRNA-1;Parent=Msa1136920;Name=Msa1136920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=109|1|1|1|0.33|0|4|258|93 |
| chr7_4 | exon | 5632400 | 5632511 | 5632400 | ID=Msa1136920-mRNA-1:exon:1489;Parent=Msa1136920-mRNA-1 |
| chr7_4 | exon | 5632599 | 5632757 | 5632599 | ID=Msa1136920-mRNA-1:exon:1490;Parent=Msa1136920-mRNA-1 |
| chr7_4 | exon | 5635515 | 5635694 | 5635515 | ID=Msa1136920-mRNA-1:exon:1491;Parent=Msa1136920-mRNA-1 |
| chr7_4 | exon | 5635739 | 5635936 | 5635739 | ID=Msa1136920-mRNA-1:exon:1492;Parent=Msa1136920-mRNA-1 |
| chr7_4 | five_prime_UTR | 5632400 | 5632508 | 5632400 | ID=Msa1136920-mRNA-1:five_prime_utr;Parent=Msa1136920-mRNA-1 |
| chr7_4 | CDS | 5632509 | 5632511 | 5632509 | ID=Msa1136920-mRNA-1:cds;Parent=Msa1136920-mRNA-1 |
| chr7_4 | CDS | 5632599 | 5632757 | 5632599 | ID=Msa1136920-mRNA-1:cds;Parent=Msa1136920-mRNA-1 |
| chr7_4 | CDS | 5635515 | 5635634 | 5635515 | ID=Msa1136920-mRNA-1:cds;Parent=Msa1136920-mRNA-1 |
| chr7_4 | three_prime_UTR | 5635635 | 5635694 | 5635635 | ID=Msa1136920-mRNA-1:three_prime_utr;Parent=Msa1136920-mRNA-1 |
| chr7_4 | three_prime_UTR | 5635739 | 5635936 | 5635739 | ID=Msa1136920-mRNA-1:three_prime_utr;Parent=Msa1136920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
