Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137160 | XP_013468204.1 | 62.046 | 303 | 69 | 5 | 2 | 260 | 69 | 369 | 6.81e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137160 | A0A072VKT8 | 62.046 | 303 | 69 | 5 | 2 | 260 | 69 | 369 | 3.25e-109 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0925190 | Msa1137160 | 0.810486 | 1.125631e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137160 | MtrunA17_Chr1g0181301 | 62.046 | 303 | 69 | 5 | 2 | 260 | 69 | 369 | 6.26e-113 | 330 |
| Msa1137160 | MtrunA17_Chr5g0415931 | 43.919 | 296 | 115 | 5 | 2 | 260 | 71 | 352 | 3.76e-72 | 225 |
| Msa1137160 | MtrunA17_Chr5g0415901 | 41.313 | 259 | 124 | 5 | 2 | 260 | 69 | 299 | 1.96e-53 | 176 |
| Msa1137160 | MtrunA17_Chr5g0437241 | 34.507 | 284 | 121 | 6 | 12 | 259 | 1 | 255 | 2.81e-42 | 145 |
| Msa1137160 | MtrunA17_Chr1g0208731 | 32.727 | 275 | 115 | 6 | 4 | 238 | 70 | 314 | 2.45e-33 | 124 |
| Msa1137160 | MtrunA17_Chr5g0437231 | 35.081 | 248 | 104 | 8 | 3 | 215 | 65 | 290 | 8.95e-31 | 115 |
| Msa1137160 | MtrunA17_Chr7g0247701 | 31.707 | 287 | 124 | 9 | 1 | 243 | 76 | 334 | 5.24e-27 | 107 |
| Msa1137160 | MtrunA17_Chr7g0247731 | 31.333 | 300 | 124 | 11 | 5 | 260 | 78 | 339 | 5.79e-24 | 99.0 |
| Msa1137160 | MtrunA17_Chr7g0246641 | 32.941 | 255 | 104 | 12 | 26 | 240 | 2 | 229 | 3.67e-21 | 89.7 |
| Msa1137160 | MtrunA17_Chr7g0247721 | 31.271 | 291 | 118 | 12 | 4 | 243 | 116 | 375 | 5.92e-21 | 91.3 |
| Msa1137160 | MtrunA17_Chr1g0151451 | 37.838 | 111 | 48 | 4 | 4 | 108 | 79 | 174 | 4.82e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTTGTTGTAGCAATTTA+TGG | 0.243421 | 7_4:+5864692 | Msa1137160:CDS |
| AATGTTAAGGCTTGATAGTT+TGG | 0.251290 | 7_4:+5865104 | Msa1137160:CDS |
| TGTTATGAGGGAGTGATAAT+TGG | 0.265291 | 7_4:-5864457 | None:intergenic |
| AGCATATCTATTTAAATCAT+TGG | 0.316681 | 7_4:+5864939 | Msa1137160:CDS |
| TTCATATCAAATGGTCCATT+CGG | 0.350533 | 7_4:-5865255 | None:intergenic |
| CGAAGTGTATAAGTTGGAAT+TGG | 0.356208 | 7_4:+5865056 | Msa1137160:CDS |
| AGAACAATGAGATGTTTATA+TGG | 0.371045 | 7_4:+5864407 | None:intergenic |
| ATATATATCCGGCATGTAGA+TGG | 0.378221 | 7_4:-5864594 | None:intergenic |
| ATGTTAAGGCTTGATAGTTT+GGG | 0.380504 | 7_4:+5865105 | Msa1137160:CDS |
| TCTTCATCGTCGTCGTCATC+AGG | 0.386056 | 7_4:-5865000 | None:intergenic |
| TTATGATTGTAATGTTTGTA+AGG | 0.390266 | 7_4:+5864631 | Msa1137160:CDS |
| TAGGGTTATAAATGTAGCTT+TGG | 0.392133 | 7_4:-5864531 | None:intergenic |
| ATATCTAGTAGTGGTGCTAT+AGG | 0.404207 | 7_4:+5865030 | Msa1137160:CDS |
| TTTCGTCCAACAAAATTTAC+CGG | 0.410684 | 7_4:+5864432 | Msa1137160:CDS |
| TCATATCAAATGGTCCATTC+GGG | 0.418206 | 7_4:-5865254 | None:intergenic |
| GATGAAAGCTAGATTGTTGA+AGG | 0.422444 | 7_4:-5864561 | None:intergenic |
| TTGGAATTGGATCTTCAAAC+TGG | 0.428934 | 7_4:+5865069 | Msa1137160:CDS |
| CGACAAAACCTCTTGTTATG+AGG | 0.434459 | 7_4:-5864470 | None:intergenic |
| TGGCTTGTAAGAAAAGCTAT+TGG | 0.434695 | 7_4:+5864973 | Msa1137160:CDS |
| GAACAATGAGATGTTTATAT+GGG | 0.439022 | 7_4:+5864408 | None:intergenic |
| GTAAGCTTATACAAATGTTA+AGG | 0.439309 | 7_4:+5865091 | Msa1137160:CDS |
| GATTGTTGAAGGGATTAAGT+AGG | 0.459812 | 7_4:-5864550 | None:intergenic |
| CTAATTCGTCTATATATATC+CGG | 0.461173 | 7_4:-5864605 | None:intergenic |
| TCATGGTTGGCTAGCAAAGA+TGG | 0.473384 | 7_4:+5864499 | Msa1137160:CDS |
| ATTGTTGAAGGGATTAAGTA+GGG | 0.478071 | 7_4:-5864549 | None:intergenic |
| GGTCCATTCGGGTAAGGATG+TGG | 0.500949 | 7_4:-5865243 | None:intergenic |
| CAACTCGAAGGATTGTGAAA+AGG | 0.503350 | 7_4:+5864864 | Msa1137160:CDS |
| TAATCGTGCGGACTAGTTGT+AGG | 0.504337 | 7_4:-5864671 | None:intergenic |
| CCCAATGTTGTTTCATCGCG+AGG | 0.517264 | 7_4:+5864892 | Msa1137160:CDS |
| TGGTCTATGCCGTGGGACGT+TGG | 0.518643 | 7_4:+5864815 | Msa1137160:CDS |
| TCAAATGGTCCATTCGGGTA+AGG | 0.521367 | 7_4:-5865249 | None:intergenic |
| GAGGGAGTGATAATTGGAAC+CGG | 0.528057 | 7_4:-5864451 | None:intergenic |
| AGGATTCGAAGTGTATAAGT+TGG | 0.528528 | 7_4:+5865050 | Msa1137160:CDS |
| GGCATGTAGATGGGTGGTAG+AGG | 0.528816 | 7_4:-5864584 | None:intergenic |
| TATATATCCGGCATGTAGAT+GGG | 0.534477 | 7_4:-5864593 | None:intergenic |
| CCCTCGCGATGAAACAACAT+TGG | 0.534928 | 7_4:-5864893 | None:intergenic |
| TTTGTCGTTCAAGTCATGGT+TGG | 0.548450 | 7_4:+5864486 | Msa1137160:CDS |
| CCTCGCGATGAAACAACATT+GGG | 0.556507 | 7_4:-5864892 | None:intergenic |
| TATCTATTTAAATCATTGGA+GGG | 0.561312 | 7_4:+5864943 | Msa1137160:CDS |
| TAAAGGCCTGGTCTATGCCG+TGG | 0.566400 | 7_4:+5864807 | Msa1137160:intron |
| AACGTCCCACGGCATAGACC+AGG | 0.566682 | 7_4:-5864813 | None:intergenic |
| TTTAGACATTTGCAACTCGA+AGG | 0.569913 | 7_4:+5864852 | Msa1137160:CDS |
| ATATCTATTTAAATCATTGG+AGG | 0.573961 | 7_4:+5864942 | Msa1137160:CDS |
| TATCACTCCCTCATAACAAG+AGG | 0.587347 | 7_4:+5864462 | Msa1137160:CDS |
| GCATGTAGATGGGTGGTAGA+GGG | 0.595686 | 7_4:-5864583 | None:intergenic |
| CCAATGTTGTTTCATCGCGA+GGG | 0.596874 | 7_4:+5864893 | Msa1137160:CDS |
| GACAAAACCTCTTGTTATGA+GGG | 0.599913 | 7_4:-5864469 | None:intergenic |
| AAAGGCCTGGTCTATGCCGT+GGG | 0.605272 | 7_4:+5864808 | Msa1137160:intron |
| ATGAAAGCTAGATTGTTGAA+GGG | 0.612620 | 7_4:-5864560 | None:intergenic |
| GATGTTATTCCAACGTCCCA+CGG | 0.615721 | 7_4:-5864824 | None:intergenic |
| GATAGTCATATATCTAGTAG+TGG | 0.626262 | 7_4:+5865021 | Msa1137160:CDS |
| TCTACCACCCATCTACATGC+CGG | 0.627361 | 7_4:+5864586 | Msa1137160:CDS |
| AATCATTGGAGGGAGACTTG+TGG | 0.628442 | 7_4:+5864953 | Msa1137160:CDS |
| TGTCCACATCCTTACCCGAA+TGG | 0.630695 | 7_4:+5865240 | Msa1137160:CDS |
| ACAGTCTTCATAGAAATCAT+CGG | 0.647279 | 7_4:-5865220 | None:intergenic |
| ATATCCGGCATGTAGATGGG+TGG | 0.694912 | 7_4:-5864590 | None:intergenic |
| GCTACAACAACATAATCGTG+CGG | 0.702126 | 7_4:-5864683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGATTTTCATATCAAA+TGG | - | chr7_4:5865267-5865286 | None:intergenic | 15.0% |
| !!! | TTAAAGATTTTCATATCAAA+TGG | - | chr7_4:5865267-5865286 | None:intergenic | 15.0% |
| !! | TTATGATTGTAATGTTTGTA+AGG | + | chr7_4:5864631-5864650 | Msa1137160:CDS | 20.0% |
| !!! | ACCGATGTTATATTTTATAA+AGG | + | chr7_4:5864790-5864809 | Msa1137160:intron | 20.0% |
| !! | GCCTTTATAAAATATAACAT+CGG | - | chr7_4:5864794-5864813 | None:intergenic | 20.0% |
| !! | AGCATATCTATTTAAATCAT+TGG | + | chr7_4:5864939-5864958 | Msa1137160:CDS | 20.0% |
| !! | ATATCTATTTAAATCATTGG+AGG | + | chr7_4:5864942-5864961 | Msa1137160:CDS | 20.0% |
| !! | TATCTATTTAAATCATTGGA+GGG | + | chr7_4:5864943-5864962 | Msa1137160:CDS | 20.0% |
| !! | TTATGATTGTAATGTTTGTA+AGG | + | chr7_4:5864631-5864650 | Msa1137160:CDS | 20.0% |
| !!! | ACCGATGTTATATTTTATAA+AGG | + | chr7_4:5864790-5864809 | Msa1137160:intron | 20.0% |
| !! | GCCTTTATAAAATATAACAT+CGG | - | chr7_4:5864794-5864813 | None:intergenic | 20.0% |
| !! | AGCATATCTATTTAAATCAT+TGG | + | chr7_4:5864939-5864958 | Msa1137160:CDS | 20.0% |
| !! | ATATCTATTTAAATCATTGG+AGG | + | chr7_4:5864942-5864961 | Msa1137160:CDS | 20.0% |
| !! | TATCTATTTAAATCATTGGA+GGG | + | chr7_4:5864943-5864962 | Msa1137160:CDS | 20.0% |
| ! | CTAATTCGTCTATATATATC+CGG | - | chr7_4:5864608-5864627 | None:intergenic | 25.0% |
| ! | TATGTTGTTGTAGCAATTTA+TGG | + | chr7_4:5864692-5864711 | Msa1137160:CDS | 25.0% |
| !! | TGTTATATTTTATAAAGGCC+TGG | + | chr7_4:5864795-5864814 | Msa1137160:intron | 25.0% |
| ! | GTAAGCTTATACAAATGTTA+AGG | + | chr7_4:5865091-5865110 | Msa1137160:CDS | 25.0% |
| !!! | GGAGACAATGTTTTATTTAT+GGG | + | chr7_4:5865126-5865145 | Msa1137160:CDS | 25.0% |
| ! | CTAATTCGTCTATATATATC+CGG | - | chr7_4:5864608-5864627 | None:intergenic | 25.0% |
| ! | TATGTTGTTGTAGCAATTTA+TGG | + | chr7_4:5864692-5864711 | Msa1137160:CDS | 25.0% |
| !! | TGTTATATTTTATAAAGGCC+TGG | + | chr7_4:5864795-5864814 | Msa1137160:intron | 25.0% |
| ! | GTAAGCTTATACAAATGTTA+AGG | + | chr7_4:5865091-5865110 | Msa1137160:CDS | 25.0% |
| !!! | GGAGACAATGTTTTATTTAT+GGG | + | chr7_4:5865126-5865145 | Msa1137160:CDS | 25.0% |
| TTTCGTCCAACAAAATTTAC+CGG | + | chr7_4:5864432-5864451 | Msa1137160:CDS | 30.0% | |
| TAGGGTTATAAATGTAGCTT+TGG | - | chr7_4:5864534-5864553 | None:intergenic | 30.0% | |
| ATTGTTGAAGGGATTAAGTA+GGG | - | chr7_4:5864552-5864571 | None:intergenic | 30.0% | |
| ATGAAAGCTAGATTGTTGAA+GGG | - | chr7_4:5864563-5864582 | None:intergenic | 30.0% | |
| ! | ATAAGTCCAAAACTTTTGTC+CGG | - | chr7_4:5864746-5864765 | None:intergenic | 30.0% |
| GATAGTCATATATCTAGTAG+TGG | + | chr7_4:5865021-5865040 | Msa1137160:CDS | 30.0% | |
| ! | AATGTTAAGGCTTGATAGTT+TGG | + | chr7_4:5865104-5865123 | Msa1137160:CDS | 30.0% |
| ! | ATGTTAAGGCTTGATAGTTT+GGG | + | chr7_4:5865105-5865124 | Msa1137160:CDS | 30.0% |
| !!! | GGGAGACAATGTTTTATTTA+TGG | + | chr7_4:5865125-5865144 | Msa1137160:CDS | 30.0% |
| ACAGTCTTCATAGAAATCAT+CGG | - | chr7_4:5865223-5865242 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+CGG | - | chr7_4:5865258-5865277 | None:intergenic | 30.0% | |
| TTTCGTCCAACAAAATTTAC+CGG | + | chr7_4:5864432-5864451 | Msa1137160:CDS | 30.0% | |
| TAGGGTTATAAATGTAGCTT+TGG | - | chr7_4:5864534-5864553 | None:intergenic | 30.0% | |
| ATTGTTGAAGGGATTAAGTA+GGG | - | chr7_4:5864552-5864571 | None:intergenic | 30.0% | |
| ATGAAAGCTAGATTGTTGAA+GGG | - | chr7_4:5864563-5864582 | None:intergenic | 30.0% | |
| ! | ATAAGTCCAAAACTTTTGTC+CGG | - | chr7_4:5864746-5864765 | None:intergenic | 30.0% |
| GATAGTCATATATCTAGTAG+TGG | + | chr7_4:5865021-5865040 | Msa1137160:CDS | 30.0% | |
| ! | AATGTTAAGGCTTGATAGTT+TGG | + | chr7_4:5865104-5865123 | Msa1137160:CDS | 30.0% |
| ! | ATGTTAAGGCTTGATAGTTT+GGG | + | chr7_4:5865105-5865124 | Msa1137160:CDS | 30.0% |
| !!! | GGGAGACAATGTTTTATTTA+TGG | + | chr7_4:5865125-5865144 | Msa1137160:CDS | 30.0% |
| ACAGTCTTCATAGAAATCAT+CGG | - | chr7_4:5865223-5865242 | None:intergenic | 30.0% | |
| TTCATATCAAATGGTCCATT+CGG | - | chr7_4:5865258-5865277 | None:intergenic | 30.0% | |
| ! | TTGGAACCGGTAAATTTTGT+TGG | - | chr7_4:5864441-5864460 | None:intergenic | 35.0% |
| TGTTATGAGGGAGTGATAAT+TGG | - | chr7_4:5864460-5864479 | None:intergenic | 35.0% | |
| ! | GACAAAACCTCTTGTTATGA+GGG | - | chr7_4:5864472-5864491 | None:intergenic | 35.0% |
| GATTGTTGAAGGGATTAAGT+AGG | - | chr7_4:5864553-5864572 | None:intergenic | 35.0% | |
| GATGAAAGCTAGATTGTTGA+AGG | - | chr7_4:5864564-5864583 | None:intergenic | 35.0% | |
| TATATATCCGGCATGTAGAT+GGG | - | chr7_4:5864596-5864615 | None:intergenic | 35.0% | |
| ATATATATCCGGCATGTAGA+TGG | - | chr7_4:5864597-5864616 | None:intergenic | 35.0% | |
| TTTAGACATTTGCAACTCGA+AGG | + | chr7_4:5864852-5864871 | Msa1137160:CDS | 35.0% | |
| ! | TGGCTTGTAAGAAAAGCTAT+TGG | + | chr7_4:5864973-5864992 | Msa1137160:CDS | 35.0% |
| !! | ATATCTAGTAGTGGTGCTAT+AGG | + | chr7_4:5865030-5865049 | Msa1137160:CDS | 35.0% |
| AGGATTCGAAGTGTATAAGT+TGG | + | chr7_4:5865050-5865069 | Msa1137160:CDS | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr7_4:5865056-5865075 | Msa1137160:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAC+TGG | + | chr7_4:5865069-5865088 | Msa1137160:CDS | 35.0% | |
| TCATATCAAATGGTCCATTC+GGG | - | chr7_4:5865257-5865276 | None:intergenic | 35.0% | |
| ! | TTGGAACCGGTAAATTTTGT+TGG | - | chr7_4:5864441-5864460 | None:intergenic | 35.0% |
| TGTTATGAGGGAGTGATAAT+TGG | - | chr7_4:5864460-5864479 | None:intergenic | 35.0% | |
| ! | GACAAAACCTCTTGTTATGA+GGG | - | chr7_4:5864472-5864491 | None:intergenic | 35.0% |
| GATTGTTGAAGGGATTAAGT+AGG | - | chr7_4:5864553-5864572 | None:intergenic | 35.0% | |
| GATGAAAGCTAGATTGTTGA+AGG | - | chr7_4:5864564-5864583 | None:intergenic | 35.0% | |
| TATATATCCGGCATGTAGAT+GGG | - | chr7_4:5864596-5864615 | None:intergenic | 35.0% | |
| ATATATATCCGGCATGTAGA+TGG | - | chr7_4:5864597-5864616 | None:intergenic | 35.0% | |
| TTTAGACATTTGCAACTCGA+AGG | + | chr7_4:5864852-5864871 | Msa1137160:CDS | 35.0% | |
| ! | TGGCTTGTAAGAAAAGCTAT+TGG | + | chr7_4:5864973-5864992 | Msa1137160:CDS | 35.0% |
| !! | ATATCTAGTAGTGGTGCTAT+AGG | + | chr7_4:5865030-5865049 | Msa1137160:CDS | 35.0% |
| AGGATTCGAAGTGTATAAGT+TGG | + | chr7_4:5865050-5865069 | Msa1137160:CDS | 35.0% | |
| ! | CGAAGTGTATAAGTTGGAAT+TGG | + | chr7_4:5865056-5865075 | Msa1137160:CDS | 35.0% |
| TTGGAATTGGATCTTCAAAC+TGG | + | chr7_4:5865069-5865088 | Msa1137160:CDS | 35.0% | |
| TCATATCAAATGGTCCATTC+GGG | - | chr7_4:5865257-5865276 | None:intergenic | 35.0% | |
| TATCACTCCCTCATAACAAG+AGG | + | chr7_4:5864462-5864481 | Msa1137160:CDS | 40.0% | |
| ! | CGACAAAACCTCTTGTTATG+AGG | - | chr7_4:5864473-5864492 | None:intergenic | 40.0% |
| !! | AGGTTTTGTCGTTCAAGTCA+TGG | + | chr7_4:5864482-5864501 | Msa1137160:CDS | 40.0% |
| TTTGTCGTTCAAGTCATGGT+TGG | + | chr7_4:5864486-5864505 | Msa1137160:CDS | 40.0% | |
| GCTACAACAACATAATCGTG+CGG | - | chr7_4:5864686-5864705 | None:intergenic | 40.0% | |
| GTTCTTGCTTTCATGAAAGC+CGG | + | chr7_4:5864724-5864743 | Msa1137160:intron | 40.0% | |
| ! | TGAAAGCCGGACAAAAGTTT+TGG | + | chr7_4:5864737-5864756 | Msa1137160:intron | 40.0% |
| CAACTCGAAGGATTGTGAAA+AGG | + | chr7_4:5864864-5864883 | Msa1137160:CDS | 40.0% | |
| TATCACTCCCTCATAACAAG+AGG | + | chr7_4:5864462-5864481 | Msa1137160:CDS | 40.0% | |
| ! | CGACAAAACCTCTTGTTATG+AGG | - | chr7_4:5864473-5864492 | None:intergenic | 40.0% |
| !! | AGGTTTTGTCGTTCAAGTCA+TGG | + | chr7_4:5864482-5864501 | Msa1137160:CDS | 40.0% |
| TTTGTCGTTCAAGTCATGGT+TGG | + | chr7_4:5864486-5864505 | Msa1137160:CDS | 40.0% | |
| GCTACAACAACATAATCGTG+CGG | - | chr7_4:5864686-5864705 | None:intergenic | 40.0% | |
| GTTCTTGCTTTCATGAAAGC+CGG | + | chr7_4:5864724-5864743 | Msa1137160:intron | 40.0% | |
| ! | TGAAAGCCGGACAAAAGTTT+TGG | + | chr7_4:5864737-5864756 | Msa1137160:intron | 40.0% |
| CAACTCGAAGGATTGTGAAA+AGG | + | chr7_4:5864864-5864883 | Msa1137160:CDS | 40.0% | |
| GAGGGAGTGATAATTGGAAC+CGG | - | chr7_4:5864454-5864473 | None:intergenic | 45.0% | |
| ! | TCATGGTTGGCTAGCAAAGA+TGG | + | chr7_4:5864499-5864518 | Msa1137160:CDS | 45.0% |
| !! | TAATCGTGCGGACTAGTTGT+AGG | - | chr7_4:5864674-5864693 | None:intergenic | 45.0% |
| GATGTTATTCCAACGTCCCA+CGG | - | chr7_4:5864827-5864846 | None:intergenic | 45.0% | |
| CCTCGCGATGAAACAACATT+GGG | - | chr7_4:5864895-5864914 | None:intergenic | 45.0% | |
| !! | CCAATGTTGTTTCATCGCGA+GGG | + | chr7_4:5864893-5864912 | Msa1137160:CDS | 45.0% |
| AATCATTGGAGGGAGACTTG+TGG | + | chr7_4:5864953-5864972 | Msa1137160:CDS | 45.0% | |
| TCAAATGGTCCATTCGGGTA+AGG | - | chr7_4:5865252-5865271 | None:intergenic | 45.0% | |
| GAGGGAGTGATAATTGGAAC+CGG | - | chr7_4:5864454-5864473 | None:intergenic | 45.0% | |
| ! | TCATGGTTGGCTAGCAAAGA+TGG | + | chr7_4:5864499-5864518 | Msa1137160:CDS | 45.0% |
| !! | TAATCGTGCGGACTAGTTGT+AGG | - | chr7_4:5864674-5864693 | None:intergenic | 45.0% |
| GATGTTATTCCAACGTCCCA+CGG | - | chr7_4:5864827-5864846 | None:intergenic | 45.0% | |
| CCTCGCGATGAAACAACATT+GGG | - | chr7_4:5864895-5864914 | None:intergenic | 45.0% | |
| !! | CCAATGTTGTTTCATCGCGA+GGG | + | chr7_4:5864893-5864912 | Msa1137160:CDS | 45.0% |
| AATCATTGGAGGGAGACTTG+TGG | + | chr7_4:5864953-5864972 | Msa1137160:CDS | 45.0% | |
| TCAAATGGTCCATTCGGGTA+AGG | - | chr7_4:5865252-5865271 | None:intergenic | 45.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr7_4:5864586-5864605 | None:intergenic | 50.0% | |
| TCTACCACCCATCTACATGC+CGG | + | chr7_4:5864586-5864605 | Msa1137160:CDS | 50.0% | |
| ATATCCGGCATGTAGATGGG+TGG | - | chr7_4:5864593-5864612 | None:intergenic | 50.0% | |
| !! | CCCAATGTTGTTTCATCGCG+AGG | + | chr7_4:5864892-5864911 | Msa1137160:CDS | 50.0% |
| CCCTCGCGATGAAACAACAT+TGG | - | chr7_4:5864896-5864915 | None:intergenic | 50.0% | |
| TCTTCATCGTCGTCGTCATC+AGG | - | chr7_4:5865003-5865022 | None:intergenic | 50.0% | |
| TGTCCACATCCTTACCCGAA+TGG | + | chr7_4:5865240-5865259 | Msa1137160:CDS | 50.0% | |
| GCATGTAGATGGGTGGTAGA+GGG | - | chr7_4:5864586-5864605 | None:intergenic | 50.0% | |
| TCTACCACCCATCTACATGC+CGG | + | chr7_4:5864586-5864605 | Msa1137160:CDS | 50.0% | |
| ATATCCGGCATGTAGATGGG+TGG | - | chr7_4:5864593-5864612 | None:intergenic | 50.0% | |
| !! | CCCAATGTTGTTTCATCGCG+AGG | + | chr7_4:5864892-5864911 | Msa1137160:CDS | 50.0% |
| CCCTCGCGATGAAACAACAT+TGG | - | chr7_4:5864896-5864915 | None:intergenic | 50.0% | |
| TCTTCATCGTCGTCGTCATC+AGG | - | chr7_4:5865003-5865022 | None:intergenic | 50.0% | |
| TGTCCACATCCTTACCCGAA+TGG | + | chr7_4:5865240-5865259 | Msa1137160:CDS | 50.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr7_4:5864587-5864606 | None:intergenic | 55.0% | |
| TAAAGGCCTGGTCTATGCCG+TGG | + | chr7_4:5864807-5864826 | Msa1137160:intron | 55.0% | |
| AAAGGCCTGGTCTATGCCGT+GGG | + | chr7_4:5864808-5864827 | Msa1137160:intron | 55.0% | |
| GGTCCATTCGGGTAAGGATG+TGG | - | chr7_4:5865246-5865265 | None:intergenic | 55.0% | |
| GGCATGTAGATGGGTGGTAG+AGG | - | chr7_4:5864587-5864606 | None:intergenic | 55.0% | |
| TAAAGGCCTGGTCTATGCCG+TGG | + | chr7_4:5864807-5864826 | Msa1137160:intron | 55.0% | |
| AAAGGCCTGGTCTATGCCGT+GGG | + | chr7_4:5864808-5864827 | Msa1137160:intron | 55.0% | |
| GGTCCATTCGGGTAAGGATG+TGG | - | chr7_4:5865246-5865265 | None:intergenic | 55.0% | |
| AACGTCCCACGGCATAGACC+AGG | - | chr7_4:5864816-5864835 | None:intergenic | 60.0% | |
| TGGTCTATGCCGTGGGACGT+TGG | + | chr7_4:5864815-5864834 | Msa1137160:CDS | 60.0% | |
| AACGTCCCACGGCATAGACC+AGG | - | chr7_4:5864816-5864835 | None:intergenic | 60.0% | |
| TGGTCTATGCCGTGGGACGT+TGG | + | chr7_4:5864815-5864834 | Msa1137160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 5864413 | 5865293 | 5864413 | ID=Msa1137160;Name=Msa1137160 |
| chr7_4 | mRNA | 5864413 | 5865293 | 5864413 | ID=Msa1137160-mRNA-1;Parent=Msa1137160;Name=Msa1137160-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|260 |
| chr7_4 | exon | 5864413 | 5864713 | 5864413 | ID=Msa1137160-mRNA-1:exon:1612;Parent=Msa1137160-mRNA-1 |
| chr7_4 | exon | 5864812 | 5865293 | 5864812 | ID=Msa1137160-mRNA-1:exon:1613;Parent=Msa1137160-mRNA-1 |
| chr7_4 | CDS | 5864413 | 5864713 | 5864413 | ID=Msa1137160-mRNA-1:cds;Parent=Msa1137160-mRNA-1 |
| chr7_4 | CDS | 5864812 | 5865293 | 5864812 | ID=Msa1137160-mRNA-1:cds;Parent=Msa1137160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
