Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925190 | XP_013452099.1 | 89.337 | 769 | 77 | 2 | 1 | 765 | 1 | 768 | 0.0 | 1303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0632410 | Msa0925190 | 0.802334 | 5.894879e-49 | -8.615850e-47 |
| Msa0641100 | Msa0925190 | 0.800250 | 1.573999e-48 | -8.615850e-47 |
| Msa0768290 | Msa0925190 | 0.817849 | 2.664130e-52 | -8.615850e-47 |
| Msa0768370 | Msa0925190 | 0.811725 | 6.065434e-51 | -8.615850e-47 |
| Msa0824590 | Msa0925190 | 0.812713 | 3.690820e-51 | -8.615850e-47 |
| Msa0236510 | Msa0925190 | -0.804524 | 2.072978e-49 | -8.615850e-47 |
| Msa0240420 | Msa0925190 | 0.866892 | 2.044284e-65 | -8.615850e-47 |
| Msa0271770 | Msa0925190 | 0.820784 | 5.711630e-53 | -8.615850e-47 |
| Msa0275020 | Msa0925190 | 0.800191 | 1.618156e-48 | -8.615850e-47 |
| Msa0575010 | Msa0925190 | 0.832362 | 9.869342e-56 | -8.615850e-47 |
| Msa0890310 | Msa0925190 | 0.867193 | 1.639520e-65 | -8.615850e-47 |
| Msa0899430 | Msa0925190 | 0.802740 | 4.860820e-49 | -8.615850e-47 |
| Msa0916690 | Msa0925190 | 0.822827 | 1.923769e-53 | -8.615850e-47 |
| Msa0918400 | Msa0925190 | 0.804634 | 1.966122e-49 | -8.615850e-47 |
| Msa0925190 | Msa0955280 | 0.809412 | 1.916770e-50 | -8.615850e-47 |
| Msa0925190 | Msa0990530 | 0.811768 | 5.935845e-51 | -8.615850e-47 |
| Msa0925190 | Msa1137160 | 0.810486 | 1.125631e-50 | -8.615850e-47 |
| Msa0925190 | Msa1210220 | 0.800516 | 1.389567e-48 | -8.615850e-47 |
| Msa0925190 | Msa1319800 | 0.823374 | 1.433913e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925190 | MtrunA17_Chr6g0471251 | 89.337 | 769 | 77 | 2 | 1 | 765 | 1 | 768 | 0.0 | 1303 |
| Msa0925190 | MtrunA17_Chr2g0325661 | 64.174 | 896 | 170 | 11 | 2 | 765 | 1 | 877 | 0.0 | 987 |
| Msa0925190 | MtrunA17_Chr2g0325351 | 53.369 | 742 | 245 | 11 | 55 | 764 | 16 | 688 | 0.0 | 606 |
| Msa0925190 | MtrunA17_Chr2g0325621 | 51.796 | 724 | 269 | 12 | 51 | 765 | 9 | 661 | 0.0 | 556 |
| Msa0925190 | MtrunA17_Chr2g0325811 | 44.084 | 862 | 350 | 18 | 2 | 763 | 1 | 830 | 0.0 | 553 |
| Msa0925190 | MtrunA17_Chr2g0325711 | 44.931 | 799 | 324 | 12 | 57 | 745 | 26 | 818 | 0.0 | 546 |
| Msa0925190 | MtrunA17_Chr2g0325611 | 56.987 | 551 | 186 | 4 | 214 | 764 | 91 | 590 | 1.07e-178 | 524 |
| Msa0925190 | MtrunA17_Chr2g0325361 | 51.307 | 612 | 237 | 4 | 192 | 764 | 488 | 1077 | 8.22e-159 | 489 |
| Msa0925190 | MtrunA17_Chr2g0325361 | 39.636 | 550 | 223 | 13 | 47 | 504 | 2 | 534 | 4.01e-74 | 261 |
| Msa0925190 | MtrunA17_Chr2g0280141 | 40.723 | 830 | 333 | 18 | 57 | 764 | 25 | 817 | 1.01e-156 | 476 |
| Msa0925190 | MtrunA17_Chr2g0325321 | 45.396 | 771 | 255 | 13 | 48 | 664 | 3 | 761 | 1.29e-156 | 473 |
| Msa0925190 | MtrunA17_Chr2g0325761 | 52.692 | 613 | 138 | 13 | 2 | 484 | 1 | 591 | 2.09e-155 | 468 |
| Msa0925190 | MtrunA17_Chr2g0325761 | 58.586 | 99 | 40 | 1 | 661 | 759 | 591 | 688 | 5.43e-26 | 114 |
| Msa0925190 | MtrunA17_Chr2g0325701 | 43.852 | 675 | 271 | 13 | 5 | 661 | 5 | 589 | 6.25e-136 | 414 |
| Msa0925190 | MtrunA17_Chr5g0434761 | 70.566 | 265 | 78 | 0 | 500 | 764 | 1 | 265 | 6.59e-123 | 369 |
| Msa0925190 | MtrunA17_Chr2g0325231 | 50.731 | 479 | 209 | 6 | 200 | 674 | 427 | 882 | 8.66e-121 | 384 |
| Msa0925190 | MtrunA17_Chr2g0325231 | 37.812 | 521 | 253 | 12 | 1 | 510 | 1 | 461 | 9.32e-58 | 212 |
| Msa0925190 | MtrunA17_Chr2g0333341 | 39.919 | 739 | 292 | 16 | 2 | 706 | 1 | 621 | 5.94e-114 | 358 |
| Msa0925190 | MtrunA17_Chr5g0416271 | 41.541 | 597 | 226 | 11 | 74 | 669 | 14 | 488 | 4.42e-111 | 346 |
| Msa0925190 | MtrunA17_Chr2g0325631 | 70.677 | 266 | 78 | 0 | 500 | 765 | 1 | 266 | 1.61e-110 | 337 |
| Msa0925190 | MtrunA17_Chr2g0325861 | 42.274 | 563 | 271 | 9 | 158 | 683 | 296 | 841 | 3.64e-99 | 326 |
| Msa0925190 | MtrunA17_Chr2g0325861 | 40.589 | 611 | 184 | 14 | 1 | 484 | 1 | 559 | 1.30e-89 | 300 |
| Msa0925190 | MtrunA17_Chr2g0325861 | 31.159 | 276 | 136 | 8 | 126 | 389 | 425 | 658 | 6.40e-14 | 75.9 |
| Msa0925190 | MtrunA17_Chr2g0325721 | 43.223 | 546 | 184 | 12 | 2 | 471 | 1 | 496 | 2.67e-93 | 300 |
| Msa0925190 | MtrunA17_Chr2g0325281 | 41.882 | 542 | 198 | 11 | 48 | 484 | 3 | 532 | 2.98e-92 | 301 |
| Msa0925190 | MtrunA17_Chr2g0325281 | 37.119 | 361 | 181 | 5 | 158 | 495 | 255 | 592 | 4.32e-37 | 147 |
| Msa0925190 | MtrunA17_Chr2g0325221 | 39.232 | 599 | 238 | 14 | 2 | 485 | 1 | 588 | 6.89e-92 | 302 |
| Msa0925190 | MtrunA17_Chr2g0325221 | 57.843 | 102 | 42 | 1 | 662 | 763 | 599 | 699 | 2.25e-26 | 115 |
| Msa0925190 | MtrunA17_Chr2g0325221 | 32.353 | 204 | 110 | 4 | 199 | 402 | 414 | 589 | 1.50e-11 | 68.2 |
| Msa0925190 | MtrunA17_Chr2g0325651 | 44.394 | 437 | 175 | 9 | 1 | 421 | 1 | 385 | 5.76e-84 | 272 |
| Msa0925190 | MtrunA17_Chr2g0325651 | 39.367 | 221 | 117 | 4 | 287 | 500 | 177 | 387 | 8.30e-19 | 89.4 |
| Msa0925190 | MtrunA17_Chr5g0434741 | 47.105 | 380 | 116 | 9 | 2 | 372 | 1 | 304 | 2.14e-77 | 251 |
| Msa0925190 | MtrunA17_Chr2g0325261 | 46.859 | 382 | 117 | 9 | 1 | 373 | 1 | 305 | 7.82e-77 | 250 |
| Msa0925190 | MtrunA17_Chr2g0325341 | 46.859 | 382 | 117 | 9 | 1 | 373 | 1 | 305 | 7.82e-77 | 250 |
| Msa0925190 | MtrunA17_Chr2g0325291 | 58.209 | 201 | 84 | 0 | 519 | 719 | 6 | 206 | 6.11e-68 | 223 |
| Msa0925190 | MtrunA17_Chr2g0325691 | 40.741 | 513 | 234 | 10 | 5 | 479 | 5 | 485 | 3.65e-67 | 236 |
| Msa0925190 | MtrunA17_Chr2g0325691 | 39.823 | 339 | 189 | 4 | 158 | 491 | 391 | 719 | 1.18e-38 | 153 |
| Msa0925190 | MtrunA17_Chr2g0325691 | 38.158 | 304 | 167 | 5 | 199 | 492 | 323 | 615 | 1.58e-28 | 122 |
| Msa0925190 | MtrunA17_Chr2g0332961 | 45.946 | 296 | 129 | 7 | 342 | 634 | 86 | 353 | 2.22e-57 | 199 |
| Msa0925190 | MtrunA17_Chr2g0332961 | 35.043 | 234 | 134 | 6 | 87 | 312 | 2 | 225 | 6.81e-21 | 95.1 |
| Msa0925190 | MtrunA17_Chr2g0325241 | 42.675 | 314 | 161 | 3 | 283 | 586 | 120 | 424 | 1.05e-54 | 194 |
| Msa0925190 | MtrunA17_Chr2g0325331 | 67.097 | 155 | 51 | 0 | 500 | 654 | 1 | 155 | 7.50e-54 | 183 |
| Msa0925190 | MtrunA17_Chr2g0325781 | 39.683 | 378 | 150 | 12 | 2 | 378 | 1 | 301 | 2.82e-52 | 184 |
| Msa0925190 | MtrunA17_Chr2g0325741 | 41.379 | 348 | 137 | 12 | 1 | 328 | 1 | 301 | 3.20e-51 | 181 |
| Msa0925190 | MtrunA17_Chr2g0332951 | 44.939 | 247 | 91 | 5 | 419 | 661 | 2 | 207 | 1.34e-49 | 173 |
| Msa0925190 | MtrunA17_Chr2g0325771 | 61.988 | 171 | 55 | 2 | 493 | 661 | 10 | 172 | 1.51e-48 | 169 |
| Msa0925190 | MtrunA17_Chr2g0325311 | 68.067 | 119 | 36 | 2 | 648 | 764 | 1 | 119 | 9.07e-44 | 154 |
| Msa0925190 | MtrunA17_Chr7g0235901 | 38.286 | 350 | 160 | 8 | 106 | 440 | 1 | 309 | 4.54e-42 | 155 |
| Msa0925190 | MtrunA17_Chr8g0361651 | 36.458 | 384 | 196 | 8 | 396 | 765 | 59 | 408 | 7.09e-41 | 157 |
| Msa0925190 | MtrunA17_Chr3g0140591 | 53.333 | 165 | 76 | 1 | 497 | 661 | 6 | 169 | 7.19e-40 | 144 |
| Msa0925190 | MtrunA17_Chr2g0325641 | 39.117 | 317 | 126 | 6 | 239 | 495 | 2 | 311 | 9.11e-38 | 144 |
| Msa0925190 | MtrunA17_Chr2g0325641 | 36.538 | 260 | 113 | 8 | 276 | 504 | 1 | 239 | 2.99e-17 | 84.0 |
| Msa0925190 | MtrunA17_Chr2g0325641 | 31.621 | 253 | 135 | 5 | 192 | 416 | 53 | 295 | 6.30e-15 | 76.6 |
| Msa0925190 | MtrunA17_Chr2g0325641 | 28.094 | 299 | 159 | 6 | 119 | 417 | 68 | 310 | 1.33e-11 | 66.6 |
| Msa0925190 | MtrunA17_Chr2g0325271 | 62.500 | 104 | 39 | 0 | 661 | 764 | 40 | 143 | 3.29e-37 | 136 |
| Msa0925190 | MtrunA17_Chr4g0024061 | 27.514 | 716 | 351 | 15 | 135 | 761 | 14 | 650 | 8.16e-35 | 142 |
| Msa0925190 | MtrunA17_Chr5g0434751 | 39.803 | 304 | 145 | 5 | 199 | 495 | 4 | 276 | 4.45e-30 | 120 |
| Msa0925190 | MtrunA17_Chr5g0434751 | 42.473 | 186 | 107 | 0 | 276 | 461 | 1 | 186 | 4.33e-20 | 91.7 |
| Msa0925190 | MtrunA17_Chr5g0434751 | 43.478 | 184 | 104 | 0 | 290 | 473 | 1 | 184 | 1.70e-19 | 89.7 |
| Msa0925190 | MtrunA17_Chr2g0325201 | 40.367 | 218 | 118 | 4 | 167 | 372 | 11 | 228 | 1.37e-29 | 117 |
| Msa0925190 | MtrunA17_Chr2g0325751 | 52.985 | 134 | 56 | 1 | 362 | 495 | 9 | 135 | 5.08e-27 | 107 |
| Msa0925190 | MtrunA17_Chr2g0325751 | 36.486 | 148 | 84 | 2 | 286 | 433 | 3 | 140 | 2.55e-13 | 68.6 |
| Msa0925190 | MtrunA17_Chr7g0235921 | 71.134 | 97 | 27 | 1 | 578 | 674 | 1 | 96 | 1.14e-24 | 99.4 |
| Msa0925190 | MtrunA17_Chr4g0044221 | 52.033 | 123 | 52 | 3 | 480 | 596 | 170 | 291 | 7.76e-24 | 103 |
| Msa0925190 | MtrunA17_Chr4g0044221 | 35.326 | 184 | 83 | 3 | 153 | 301 | 12 | 194 | 1.84e-14 | 75.1 |
| Msa0925190 | MtrunA17_Chr2g0325801 | 64.062 | 64 | 23 | 0 | 127 | 190 | 62 | 125 | 3.75e-19 | 84.0 |
| Msa0925190 | MtrunA17_Chr4g0053711 | 28.346 | 254 | 161 | 7 | 530 | 763 | 189 | 441 | 1.37e-17 | 87.0 |
| Msa0925190 | MtrunA17_Chr3g0101121 | 30.000 | 190 | 127 | 3 | 571 | 759 | 172 | 356 | 1.44e-14 | 77.4 |
| Msa0925190 | MtrunA17_Chr2g0325791 | 39.041 | 146 | 78 | 2 | 289 | 434 | 22 | 156 | 8.41e-14 | 73.2 |
| Msa0925190 | MtrunA17_Chr2g0325791 | 39.394 | 132 | 78 | 2 | 233 | 363 | 25 | 155 | 1.49e-12 | 69.7 |
| Msa0925190 | MtrunA17_Chr3g0140581 | 33.987 | 153 | 69 | 3 | 135 | 256 | 4 | 155 | 8.81e-13 | 66.6 |
| Msa0925190 | MtrunA17_Chr2g0325211 | 37.430 | 179 | 94 | 3 | 314 | 492 | 3 | 163 | 8.81e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925190 | AT5G27220.4 | 25.355 | 493 | 327 | 11 | 193 | 658 | 322 | 800 | 1.41e-12 | 72.0 |
| Msa0925190 | AT5G27220.2 | 25.355 | 493 | 327 | 11 | 193 | 658 | 322 | 800 | 1.41e-12 | 72.0 |
| Msa0925190 | AT5G27220.1 | 25.355 | 493 | 327 | 11 | 193 | 658 | 322 | 800 | 1.55e-12 | 72.0 |
| Msa0925190 | AT5G27220.1 | 26.147 | 218 | 151 | 4 | 529 | 743 | 861 | 1071 | 2.02e-12 | 71.6 |
| Msa0925190 | AT5G27220.3 | 25.355 | 493 | 327 | 11 | 193 | 658 | 322 | 800 | 1.55e-12 | 72.0 |
| Msa0925190 | AT5G27220.3 | 26.147 | 218 | 151 | 4 | 529 | 743 | 861 | 1071 | 2.02e-12 | 71.6 |
| Msa0925190 | AT5G48385.1 | 24.542 | 273 | 186 | 5 | 511 | 764 | 185 | 456 | 7.29e-12 | 69.3 |
Find 118 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTCTTTCAATATA+TGG | 0.222340 | 6_2:-67997052 | Msa0925190:CDS |
| AGATCAAGAAATCGCTATTC+TGG | 0.228035 | 6_2:-67995045 | Msa0925190:CDS |
| GATGGGAACTTAAATGTTAA+AGG | 0.230809 | 6_2:-67999247 | Msa0925190:CDS |
| GCTGAAGAAAGAAGTTAATT+TGG | 0.233019 | 6_2:-67998897 | Msa0925190:CDS |
| TTAGGGCTATCTGTATTTCT+TGG | 0.240950 | 6_2:-67994850 | Msa0925190:three_prime_UTR |
| AAGCAAGAGAGAGGAATTTA+AGG | 0.253598 | 6_2:-67998657 | Msa0925190:CDS |
| TGCATCAAGCTCTTTCTCTT+TGG | 0.259439 | 6_2:+67998592 | None:intergenic |
| AGATCCATCTAGACTTGTTT+TGG | 0.287421 | 6_2:-67997284 | Msa0925190:CDS |
| GAGTCAAAGCTGAACGAATT+TGG | 0.299814 | 6_2:-67997915 | Msa0925190:CDS |
| TCATAATATGGTGACATCTT+TGG | 0.299892 | 6_2:+67998974 | None:intergenic |
| AACCAACATAAAGGCAAATA+AGG | 0.305551 | 6_2:-67994936 | Msa0925190:exon |
| GTAGCAGATCCTCAGATTCT+AGG | 0.306498 | 6_2:+67994991 | None:intergenic |
| GCAGCTTGAAGGCCAGAAAA+AGG | 0.319865 | 6_2:-67998195 | Msa0925190:CDS |
| ATATTCTCCGAGTTCAAGTT+TGG | 0.326157 | 6_2:-67999113 | Msa0925190:CDS |
| CCGAAGAAGCCCGAGTTAAC+AGG | 0.344138 | 6_2:-67997885 | Msa0925190:CDS |
| CCTGTTAACTCGGGCTTCTT+CGG | 0.349937 | 6_2:+67997885 | None:intergenic |
| TTCTTACACAGTGGAGTGTC+GGG | 0.354275 | 6_2:+67997247 | None:intergenic |
| TTATCAAACAACCTCTTAAC+TGG | 0.355392 | 6_2:+67999028 | None:intergenic |
| TCTTCGCCGTGATCATAATA+TGG | 0.366420 | 6_2:+67998962 | None:intergenic |
| AAAAGTTGCTGAATGTAATC+TGG | 0.380835 | 6_2:-67998624 | Msa0925190:CDS |
| GTACTTAGAAGGACAATTAA+AGG | 0.383331 | 6_2:-67998363 | Msa0925190:CDS |
| TTGCTATAGTTGATTAATGA+TGG | 0.385227 | 6_2:-67999314 | Msa0925190:exon |
| CGTACACAAGGTTTAATAGT+TGG | 0.390627 | 6_2:+67997157 | None:intergenic |
| ATTTCCAAAACAAGTCTAGA+TGG | 0.395227 | 6_2:+67997280 | None:intergenic |
| GCAAGTTGAAGGACGAGAAA+TGG | 0.399180 | 6_2:-67998237 | Msa0925190:CDS |
| CTTTAGTAACTGCTTCCTTT+CGG | 0.405060 | 6_2:+67998529 | None:intergenic |
| GGAACTTGAAAATCATATAA+AGG | 0.412247 | 6_2:-67998279 | Msa0925190:CDS |
| TCGAAGGAGAAGTACTTAGA+AGG | 0.422549 | 6_2:-67998374 | Msa0925190:CDS |
| ACACATGCAGAATGCGAAAC+TGG | 0.427975 | 6_2:-67995228 | Msa0925190:CDS |
| CATTAATCAACTATAGCAAC+TGG | 0.436179 | 6_2:+67999318 | None:intergenic |
| TCAAAGTCCTCACAAGAAAC+AGG | 0.437023 | 6_2:+67999175 | None:intergenic |
| AATTATTTACAACAAAATGC+TGG | 0.446749 | 6_2:-67998732 | Msa0925190:CDS |
| TATTCTCCGAGTTCAAGTTT+GGG | 0.447098 | 6_2:-67999112 | Msa0925190:CDS |
| CTTGAACTCGGAGAATATCT+TGG | 0.448365 | 6_2:+67999118 | None:intergenic |
| AACCTTATTTGCCTTTATGT+TGG | 0.455584 | 6_2:+67994934 | None:intergenic |
| ATGGGAACTTAAATGTTAAA+GGG | 0.457071 | 6_2:-67999246 | Msa0925190:CDS |
| TCAAAAGAGATGCAGCTTGA+AGG | 0.459792 | 6_2:-67998206 | Msa0925190:CDS |
| CATGAGCTAAACCAACATAA+AGG | 0.466032 | 6_2:-67994945 | Msa0925190:CDS |
| GATCAAGAAATCGCTATTCT+GGG | 0.466046 | 6_2:-67995044 | Msa0925190:CDS |
| CTCTTCTTAACAGAAACATC+AGG | 0.468989 | 6_2:+67999073 | None:intergenic |
| AACTAACTCAATTGAAATCA+AGG | 0.469031 | 6_2:-67995183 | Msa0925190:intron |
| TCAATTCATGCTCCTTCACT+CGG | 0.469446 | 6_2:+67998141 | None:intergenic |
| TTAAGAATTGCAAAAGGAAG+AGG | 0.479453 | 6_2:-67998862 | Msa0925190:CDS |
| AGAACTCGAAGGTCGAGTTA+AGG | 0.480507 | 6_2:-67998111 | Msa0925190:CDS |
| TTTCTTGACAGAAATGTTCA+AGG | 0.482922 | 6_2:+67998997 | None:intergenic |
| ATTCAGTTGTGCATATAACT+TGG | 0.485633 | 6_2:-67995285 | Msa0925190:CDS |
| ATACTACACTGCCAGTTAAG+AGG | 0.487504 | 6_2:-67999039 | Msa0925190:CDS |
| AAAGTGTTTCCCTGTTAACT+CGG | 0.488456 | 6_2:+67997875 | None:intergenic |
| TTCCCTCAACACATCTGAAT+GGG | 0.489378 | 6_2:+67999198 | None:intergenic |
| GCGACTTGAAGATCATGTTA+AGG | 0.491092 | 6_2:-67998447 | Msa0925190:CDS |
| ATGGAGCTGTTTGAGACCCT+CGG | 0.491984 | 6_2:-67996959 | Msa0925190:CDS |
| GATCAATTAAGTCATACAAT+TGG | 0.493216 | 6_2:-67997397 | Msa0925190:CDS |
| AGAGAATCAATTCAAAGTAA+AGG | 0.495255 | 6_2:-67997991 | Msa0925190:CDS |
| AAAGGAGTTGGAATTAAAAG+AGG | 0.497111 | 6_2:-67998177 | Msa0925190:CDS |
| CGACACTCCACTGTGTAAGA+AGG | 0.497985 | 6_2:-67997245 | Msa0925190:CDS |
| ATCAAGAGCGAAGCAGATGA+AGG | 0.506269 | 6_2:-67998333 | Msa0925190:CDS |
| TTCTGTGTTGGTGATGATGA+TGG | 0.509317 | 6_2:-67999265 | Msa0925190:CDS |
| ATTATTTACAACAAAATGCT+GGG | 0.509387 | 6_2:-67998731 | Msa0925190:CDS |
| AGAATAATCGTGCTCAAATG+AGG | 0.509795 | 6_2:-67998490 | Msa0925190:CDS |
| GTTCCCTCAACACATCTGAA+TGG | 0.509947 | 6_2:+67999197 | None:intergenic |
| TTGATTTGAAATACTCAACT+TGG | 0.512958 | 6_2:+67998057 | None:intergenic |
| CTTCTTACACAGTGGAGTGT+CGG | 0.518399 | 6_2:+67997246 | None:intergenic |
| AAGCAAGGAAGAGGAACTTA+AGG | 0.518404 | 6_2:-67998699 | Msa0925190:CDS |
| ATCCCATTCAGATGTGTTGA+GGG | 0.518671 | 6_2:-67999200 | Msa0925190:CDS |
| ATTAACTTCTTTCTTCAGCA+AGG | 0.524372 | 6_2:+67998901 | None:intergenic |
| CGAAAGGAAGCAGTTACTAA+AGG | 0.530759 | 6_2:-67998528 | Msa0925190:CDS |
| CAGAAATATTAGAGTCCGAA+AGG | 0.531965 | 6_2:-67998544 | Msa0925190:CDS |
| TGGTAGAACAAGTTTGCAGT+TGG | 0.534933 | 6_2:-67997377 | Msa0925190:CDS |
| AAGTGTTTCCCTGTTAACTC+GGG | 0.540442 | 6_2:+67997876 | None:intergenic |
| GAGGGAACCTGTTTCTTGTG+AGG | 0.542255 | 6_2:-67999182 | Msa0925190:CDS |
| AATTGTTTAAGAATTGCAAA+AGG | 0.542780 | 6_2:-67998868 | Msa0925190:CDS |
| AACAATTTAAGTCAACGAAG+AGG | 0.547610 | 6_2:-67998301 | Msa0925190:CDS |
| GCATATTGAAGTACAAGTCA+AGG | 0.550943 | 6_2:-67997943 | Msa0925190:CDS |
| CTGATGTTTCTGTTAAGAAG+AGG | 0.551021 | 6_2:-67999072 | Msa0925190:CDS |
| TCAATTCAAAGTAAAGGAGA+AGG | 0.554204 | 6_2:-67997985 | Msa0925190:CDS |
| AGAGAATGAGTGCAAAGGAC+GGG | 0.555516 | 6_2:-67998411 | Msa0925190:CDS |
| CGAAGGTCGAGTTAAGGAGA+TGG | 0.560126 | 6_2:-67998105 | Msa0925190:CDS |
| TGATGTTTCTGTTAAGAAGA+GGG | 0.562050 | 6_2:-67999071 | Msa0925190:CDS |
| TGCTCAACACAAGACAGCTA+TGG | 0.566775 | 6_2:-67996978 | Msa0925190:CDS |
| CGAAGAAGCCCGAGTTAACA+GGG | 0.567490 | 6_2:-67997884 | Msa0925190:CDS |
| TGAGTGCAAAGGACGGGTGG+AGG | 0.569550 | 6_2:-67998405 | Msa0925190:CDS |
| CATCCCATTCAGATGTGTTG+AGG | 0.570187 | 6_2:-67999201 | Msa0925190:CDS |
| AAAAGTTGAAAGCAAGGAAG+AGG | 0.574724 | 6_2:-67998708 | Msa0925190:CDS |
| AACTTTATTTGCAAAACCGA+GGG | 0.584666 | 6_2:+67996943 | None:intergenic |
| TCAAGAGCGAAGCAGATGAA+GGG | 0.584809 | 6_2:-67998332 | Msa0925190:CDS |
| GATAAGCGAAACTTCTGTGT+TGG | 0.587037 | 6_2:-67999277 | Msa0925190:CDS |
| ATATGCAGTTGCATCTCACA+TGG | 0.591770 | 6_2:-67997422 | Msa0925190:intron |
| GGTGGAGGAACTTGAGTCGA+AGG | 0.591983 | 6_2:-67998390 | Msa0925190:CDS |
| CATGTTCCCAAACTTGAACT+CGG | 0.594075 | 6_2:+67999106 | None:intergenic |
| GCTGGGAAAAGTTGAAAGCA+AGG | 0.594654 | 6_2:-67998714 | Msa0925190:CDS |
| TGCAAGACAAGGGAAGTACA+TGG | 0.597292 | 6_2:+67994825 | None:intergenic |
| AAACTTTATTTGCAAAACCG+AGG | 0.599977 | 6_2:+67996942 | None:intergenic |
| AAAAGTTGAAAGCAAGAGAG+AGG | 0.600380 | 6_2:-67998666 | Msa0925190:CDS |
| ACAATTTAAGTCAACGAAGA+GGG | 0.600475 | 6_2:-67998300 | Msa0925190:CDS |
| GAATAATCGTGCTCAAATGA+GGG | 0.601937 | 6_2:-67998489 | Msa0925190:CDS |
| GACACTCCACTGTGTAAGAA+GGG | 0.602308 | 6_2:-67997244 | Msa0925190:CDS |
| AGACAACAGCCTAGAATCTG+AGG | 0.608679 | 6_2:-67995000 | Msa0925190:CDS |
| GCAATGAAGATATTAATTAG+CGG | 0.609335 | 6_2:-67998572 | Msa0925190:CDS |
| ATGTCACCATATTATGATCA+CGG | 0.609362 | 6_2:-67998968 | Msa0925190:CDS |
| ATCTGAGGATCTGCTACGAG+AGG | 0.611669 | 6_2:-67994985 | Msa0925190:CDS |
| GAATGAGTGCAAAGGACGGG+TGG | 0.612112 | 6_2:-67998408 | Msa0925190:CDS |
| AAGAGAATGAGTGCAAAGGA+CGG | 0.612372 | 6_2:-67998412 | Msa0925190:CDS |
| AAAATGGGAAGGCCGAGTGA+AGG | 0.620364 | 6_2:-67998153 | Msa0925190:CDS |
| TCAAAGCTGAACGAATTTGG+CGG | 0.620958 | 6_2:-67997912 | Msa0925190:CDS |
| GGAGAATATCTTGGTGACAC+AGG | 0.622505 | 6_2:+67999127 | None:intergenic |
| AAAGGGCTCAATTCATGTGA+GGG | 0.623050 | 6_2:-67999229 | Msa0925190:CDS |
| TCTTACACAGTGGAGTGTCG+GGG | 0.627543 | 6_2:+67997248 | None:intergenic |
| TTGTTAAATATCTTATCAGG+AGG | 0.629954 | 6_2:-67995331 | Msa0925190:CDS |
| AATCAACTATAGCAACTGGA+AGG | 0.630773 | 6_2:+67999322 | None:intergenic |
| GTTGAAGCTAGCGCGTGATG+TGG | 0.638239 | 6_2:-67997125 | Msa0925190:CDS |
| TCTGTGTTGGTGATGATGAT+GGG | 0.640405 | 6_2:-67999264 | Msa0925190:CDS |
| TAAAGGGCTCAATTCATGTG+AGG | 0.641920 | 6_2:-67999230 | Msa0925190:CDS |
| ACGATACGCAATTTGAAGAA+CGG | 0.645083 | 6_2:-67998034 | Msa0925190:CDS |
| TCAAAAGAGAATGAGTGCAA+AGG | 0.645579 | 6_2:-67998416 | Msa0925190:CDS |
| GTTCTTCTAACAGATAGATG+TGG | 0.646254 | 6_2:+67997194 | None:intergenic |
| ACTTGAAAATCATATAAAGG+AGG | 0.666678 | 6_2:-67998276 | Msa0925190:CDS |
| TTGAAAGCAGAAGAACTCGA+AGG | 0.687468 | 6_2:-67998122 | Msa0925190:CDS |
| ATACGCAATTTGAAGAACGG+TGG | 0.693928 | 6_2:-67998031 | Msa0925190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAATAATTTGACTT+CGG | + | chr6_2:67999004-67999023 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTTTTCAATTTTA+TGG | - | chr6_2:67999795-67999814 | Msa0925190:five_prime_UTR | 10.0% |
| !!! | AATCAATAACAGATTTTATA+AGG | + | chr6_2:67994786-67994805 | None:intergenic | 15.0% |
| !! | AATTCAATTGAAAAATTCAT+AGG | + | chr6_2:67994828-67994847 | None:intergenic | 15.0% |
| !! | TCTTCAATTGTAAAATTTAT+AGG | + | chr6_2:67995200-67995219 | None:intergenic | 15.0% |
| !!! | TTTACTCATTTTATCATTTA+TGG | - | chr6_2:67997812-67997831 | Msa0925190:intron | 15.0% |
| !!! | TTAATTAGTTAGATACATTT+TGG | - | chr6_2:67998083-67998102 | Msa0925190:CDS | 15.0% |
| !!! | TATTTATTTTGGGTTATATT+TGG | + | chr6_2:67998213-67998232 | None:intergenic | 15.0% |
| !!! | TCATTTCAGATATTTATTTT+GGG | + | chr6_2:67998223-67998242 | None:intergenic | 15.0% |
| !!! | TTCATTTCAGATATTTATTT+TGG | + | chr6_2:67998224-67998243 | None:intergenic | 15.0% |
| !!! | ATTTTATGTCTTTTTTTTTC+TGG | - | chr6_2:67999204-67999223 | Msa0925190:CDS | 15.0% |
| !!! | ATTTTGTTAAATATCTTATC+AGG | - | chr6_2:67999264-67999283 | Msa0925190:CDS | 15.0% |
| !! | ATCAAACATAAATGATAAAC+AGG | + | chr6_2:67995003-67995022 | None:intergenic | 20.0% |
| !! | TTATCATTTATGTTTGATTC+TGG | - | chr6_2:67995005-67995024 | Msa0925190:CDS | 20.0% |
| !! | AATTGTTTAAGAATTGCAAA+AGG | - | chr6_2:67995730-67995749 | Msa0925190:intron | 20.0% |
| !! | AATTATTTACAACAAAATGC+TGG | - | chr6_2:67995866-67995885 | Msa0925190:intron | 20.0% |
| !! | ATTATTTACAACAAAATGCT+GGG | - | chr6_2:67995867-67995886 | Msa0925190:intron | 20.0% |
| !! | ATTAAAAAAACATATTGACG+AGG | - | chr6_2:67996751-67996770 | Msa0925190:intron | 20.0% |
| !!! | TACAGATTAGTATTTTAATG+TGG | - | chr6_2:67996990-67997009 | Msa0925190:CDS | 20.0% |
| !! | AGAGAATACTAAAAATTCTT+CGG | - | chr6_2:67997509-67997528 | Msa0925190:intron | 20.0% |
| !!! | TTTTCTATCCTACAATTTTA+TGG | - | chr6_2:67997937-67997956 | Msa0925190:CDS | 20.0% |
| !! | ATGTATCTAACTAATTAATG+TGG | + | chr6_2:67998081-67998100 | None:intergenic | 20.0% |
| !! | TAAAAAATGGAATCAATTCA+AGG | - | chr6_2:67998935-67998954 | Msa0925190:CDS | 20.0% |
| !! | ATGAATCATTTCAAGAAAAT+AGG | - | chr6_2:67998958-67998977 | Msa0925190:CDS | 20.0% |
| !! | ATGCTTAATGTAAAGAAATT+TGG | - | chr6_2:67999700-67999719 | Msa0925190:intron | 20.0% |
| !! | AATGTAAAGAAATTTGGTAA+TGG | - | chr6_2:67999706-67999725 | Msa0925190:intron | 20.0% |
| !! | TCAAAACTTTTAACATTGCA+TGG | + | chr6_2:67994956-67994975 | None:intergenic | 25.0% |
| ! | ATGATAAACAGGAAGAAAAA+TGG | + | chr6_2:67994992-67995011 | None:intergenic | 25.0% |
| ! | TTGCTATAGTTGATTAATGA+TGG | - | chr6_2:67995284-67995303 | Msa0925190:CDS | 25.0% |
| !!! | TTGATTAATGATGGATTTTG+AGG | - | chr6_2:67995293-67995312 | Msa0925190:CDS | 25.0% |
| ! | ATGGGAACTTAAATGTTAAA+GGG | - | chr6_2:67995352-67995371 | Msa0925190:intron | 25.0% |
| !! | ATTACATTCAGCAACTTTTT+GGG | + | chr6_2:67995973-67995992 | None:intergenic | 25.0% |
| ! | GCAATGAAGATATTAATTAG+CGG | - | chr6_2:67996026-67996045 | Msa0925190:intron | 25.0% |
| ! | GGAACTTGAAAATCATATAA+AGG | - | chr6_2:67996319-67996338 | Msa0925190:intron | 25.0% |
| ! | ACTTGAAAATCATATAAAGG+AGG | - | chr6_2:67996322-67996341 | Msa0925190:intron | 25.0% |
| !! | TCAAAAAATAAGCAAGTTGA+AGG | - | chr6_2:67996350-67996369 | Msa0925190:intron | 25.0% |
| ! | TGGAATTAAAAGAGGAAAAA+TGG | - | chr6_2:67996429-67996448 | Msa0925190:intron | 25.0% |
| ! | GGAATTAAAAGAGGAAAAAT+GGG | - | chr6_2:67996430-67996449 | Msa0925190:intron | 25.0% |
| !! | TTGATTTGAAATACTCAACT+TGG | + | chr6_2:67996544-67996563 | None:intergenic | 25.0% |
| ! | AGAGAATCAATTCAAAGTAA+AGG | - | chr6_2:67996607-67996626 | Msa0925190:intron | 25.0% |
| ! | GAGATTCATAAAATGTTCAA+GGG | + | chr6_2:67996911-67996930 | None:intergenic | 25.0% |
| ! | AGAGATTCATAAAATGTTCA+AGG | + | chr6_2:67996912-67996931 | None:intergenic | 25.0% |
| ! | TTATAATTAAACCTTAGCCA+TGG | + | chr6_2:67996963-67996982 | None:intergenic | 25.0% |
| ! | TTACACTATTTGCATATACT+TGG | + | chr6_2:67997026-67997045 | None:intergenic | 25.0% |
| ! | CAAAGAATGTATACTATGAA+AGG | + | chr6_2:67997079-67997098 | None:intergenic | 25.0% |
| ! | CATTAAATGAAGGTAACAAT+AGG | + | chr6_2:67997107-67997126 | None:intergenic | 25.0% |
| ! | GATCAATTAAGTCATACAAT+TGG | - | chr6_2:67997201-67997220 | Msa0925190:CDS | 25.0% |
| ! | AAAGCATAAAGATAAAAGGA+GGG | + | chr6_2:67997723-67997742 | None:intergenic | 25.0% |
| ! | TACCAAAGCATAAAGATAAA+AGG | + | chr6_2:67997727-67997746 | None:intergenic | 25.0% |
| ! | TTTATCATTTATGGTAGATG+TGG | - | chr6_2:67997821-67997840 | Msa0925190:intron | 25.0% |
| ! | TTATCATTTATGGTAGATGT+GGG | - | chr6_2:67997822-67997841 | Msa0925190:intron | 25.0% |
| ! | AATTGTAGGATAGAAAAACA+TGG | + | chr6_2:67997934-67997953 | None:intergenic | 25.0% |
| !!! | ACTATATTGATAGCGTAAAA+GGG | - | chr6_2:67998407-67998426 | Msa0925190:CDS | 25.0% |
| !! | TTTATGTGCCTTCAATATTT+TGG | - | chr6_2:67998570-67998589 | Msa0925190:CDS | 25.0% |
| ! | AAATGAGTCCAAAATATTGA+AGG | + | chr6_2:67998581-67998600 | None:intergenic | 25.0% |
| ! | CATGTTATAAGCTGTAATTA+GGG | - | chr6_2:67998657-67998676 | Msa0925190:CDS | 25.0% |
| ! | ATTACAAGTAAAATCTATGC+AGG | - | chr6_2:67999021-67999040 | Msa0925190:CDS | 25.0% |
| !!! | AAGATTAAGATTTTAGCTGT+TGG | - | chr6_2:67999061-67999080 | Msa0925190:CDS | 25.0% |
| ! | TAACAAATCATTTAGCAGAT+TGG | + | chr6_2:67999174-67999193 | None:intergenic | 25.0% |
| ! | GATATTTAACAAAATCTGCA+AGG | + | chr6_2:67999259-67999278 | None:intergenic | 25.0% |
| ! | TTGTTAAATATCTTATCAGG+AGG | - | chr6_2:67999267-67999286 | Msa0925190:CDS | 25.0% |
| ! | AACTAACTCAATTGAAATCA+AGG | - | chr6_2:67999415-67999434 | Msa0925190:intron | 25.0% |
| !!! | TAAAGGCAAATAAGGTTTTT+TGG | - | chr6_2:67999670-67999689 | Msa0925190:intron | 25.0% |
| ! | AAACAAAAAATGCAAGACAA+GGG | + | chr6_2:67999786-67999805 | None:intergenic | 25.0% |
| ! | AAAACAAAAAATGCAAGACA+AGG | + | chr6_2:67999787-67999806 | None:intergenic | 25.0% |
| TGTCTGTACTTCATAGATTA+CGG | + | chr6_2:67995033-67995052 | None:intergenic | 30.0% | |
| ! | TGATTTTCTCAAACTATCTG+CGG | - | chr6_2:67995130-67995149 | Msa0925190:intron | 30.0% |
| CATTAATCAACTATAGCAAC+TGG | + | chr6_2:67995283-67995302 | None:intergenic | 30.0% | |
| GATGGGAACTTAAATGTTAA+AGG | - | chr6_2:67995351-67995370 | Msa0925190:intron | 30.0% | |
| ! | TGATGTTTCTGTTAAGAAGA+GGG | - | chr6_2:67995527-67995546 | Msa0925190:intron | 30.0% |
| TTATCAAACAACCTCTTAAC+TGG | + | chr6_2:67995573-67995592 | None:intergenic | 30.0% | |
| TTTCTTGACAGAAATGTTCA+AGG | + | chr6_2:67995604-67995623 | None:intergenic | 30.0% | |
| TCATAATATGGTGACATCTT+TGG | + | chr6_2:67995627-67995646 | None:intergenic | 30.0% | |
| ATGTCACCATATTATGATCA+CGG | - | chr6_2:67995630-67995649 | Msa0925190:intron | 30.0% | |
| ATTAACTTCTTTCTTCAGCA+AGG | + | chr6_2:67995700-67995719 | None:intergenic | 30.0% | |
| GCTGAAGAAAGAAGTTAATT+TGG | - | chr6_2:67995701-67995720 | Msa0925190:intron | 30.0% | |
| TTAAGAATTGCAAAAGGAAG+AGG | - | chr6_2:67995736-67995755 | Msa0925190:intron | 30.0% | |
| ! | TCTCTTGCTTTCAACTTTTT+GGG | + | chr6_2:67995931-67995950 | None:intergenic | 30.0% |
| ! | GATTACATTCAGCAACTTTT+TGG | + | chr6_2:67995974-67995993 | None:intergenic | 30.0% |
| AAAAGTTGCTGAATGTAATC+TGG | - | chr6_2:67995974-67995993 | Msa0925190:intron | 30.0% | |
| GTACTTAGAAGGACAATTAA+AGG | - | chr6_2:67996235-67996254 | Msa0925190:intron | 30.0% | |
| AACAATTTAAGTCAACGAAG+AGG | - | chr6_2:67996297-67996316 | Msa0925190:intron | 30.0% | |
| ACAATTTAAGTCAACGAAGA+GGG | - | chr6_2:67996298-67996317 | Msa0925190:intron | 30.0% | |
| ! | TTAATTCCAACTCCTTTTTC+TGG | + | chr6_2:67996418-67996437 | None:intergenic | 30.0% |
| AAAGGAGTTGGAATTAAAAG+AGG | - | chr6_2:67996421-67996440 | Msa0925190:intron | 30.0% | |
| TTAAAAGAGGAAAAATGGGA+AGG | - | chr6_2:67996434-67996453 | Msa0925190:intron | 30.0% | |
| ! | GGAGTCAAAAAATAAGCTTT+TGG | - | chr6_2:67996514-67996533 | Msa0925190:intron | 30.0% |
| TCAATTCAAAGTAAAGGAGA+AGG | - | chr6_2:67996613-67996632 | Msa0925190:intron | 30.0% | |
| TATTGACGAGGAAAAAGAAT+CGG | - | chr6_2:67996763-67996782 | Msa0925190:intron | 30.0% | |
| ! | ATCTCTCTGATCTAAAATGT+AGG | - | chr6_2:67997045-67997064 | Msa0925190:CDS | 30.0% |
| ! | ATCGAAGCATCATTAAATGA+AGG | + | chr6_2:67997117-67997136 | None:intergenic | 30.0% |
| ATTTCCAAAACAAGTCTAGA+TGG | + | chr6_2:67997321-67997340 | None:intergenic | 30.0% | |
| CTTCTGCTTCTTTCAATATA+TGG | - | chr6_2:67997546-67997565 | Msa0925190:intron | 30.0% | |
| ! | AACTTTATTTGCAAAACCGA+GGG | + | chr6_2:67997658-67997677 | None:intergenic | 30.0% |
| ! | AAACTTTATTTGCAAAACCG+AGG | + | chr6_2:67997659-67997678 | None:intergenic | 30.0% |
| ! | GGTTTTGCAAATAAAGTTTC+TGG | - | chr6_2:67997660-67997679 | Msa0925190:intron | 30.0% |
| CAAAGCATAAAGATAAAAGG+AGG | + | chr6_2:67997724-67997743 | None:intergenic | 30.0% | |
| ! | CTCCTTTTATCTTTATGCTT+TGG | - | chr6_2:67997722-67997741 | Msa0925190:intron | 30.0% |
| ATCTTATATGCAGTTAGATG+TGG | - | chr6_2:67997784-67997803 | Msa0925190:intron | 30.0% | |
| ! | GTGTTGATCCATAAAATTGT+AGG | + | chr6_2:67997948-67997967 | None:intergenic | 30.0% |
| TTTAAATCTCCCAAGAATCT+AGG | - | chr6_2:67998287-67998306 | Msa0925190:CDS | 30.0% | |
| !! | CACTATATTGATAGCGTAAA+AGG | - | chr6_2:67998406-67998425 | Msa0925190:CDS | 30.0% |
| !! | CTATATTGATAGCGTAAAAG+GGG | - | chr6_2:67998408-67998427 | Msa0925190:CDS | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | - | chr6_2:67998589-67998608 | Msa0925190:CDS | 30.0% |
| GCATGTTATAAGCTGTAATT+AGG | - | chr6_2:67998656-67998675 | Msa0925190:CDS | 30.0% | |
| ! | CTTGTTACTTATCAGTATGT+TGG | - | chr6_2:67998694-67998713 | Msa0925190:CDS | 30.0% |
| TGCTGAAGCAGTATAAAAAA+TGG | - | chr6_2:67998922-67998941 | Msa0925190:CDS | 30.0% | |
| ATTCAGTTGTGCATATAACT+TGG | - | chr6_2:67999313-67999332 | Msa0925190:exon | 30.0% | |
| !!! | TTGAGTTAGTTTTCTCACAA+CGG | + | chr6_2:67999406-67999425 | None:intergenic | 30.0% |
| TTATTTACGACTATCATGCA+GGG | + | chr6_2:67999500-67999519 | None:intergenic | 30.0% | |
| ATTATTTACGACTATCATGC+AGG | + | chr6_2:67999501-67999520 | None:intergenic | 30.0% | |
| TTTACTATGAACTTGAACTC+AGG | - | chr6_2:67999520-67999539 | Msa0925190:intron | 30.0% | |
| AACCAACATAAAGGCAAATA+AGG | - | chr6_2:67999662-67999681 | Msa0925190:intron | 30.0% | |
| ! | AACCTTATTTGCCTTTATGT+TGG | + | chr6_2:67999667-67999686 | None:intergenic | 30.0% |
| !! | AACCTACTACTACTTTTGTT+AGG | - | chr6_2:67999730-67999749 | Msa0925190:intron | 30.0% |
| !! | ACCTACTACTACTTTTGTTA+GGG | - | chr6_2:67999731-67999750 | Msa0925190:intron | 30.0% |
| CAACTGGAAGGAAAAATCTT+GGG | + | chr6_2:67995267-67995286 | None:intergenic | 35.0% | |
| AATCAACTATAGCAACTGGA+AGG | + | chr6_2:67995279-67995298 | None:intergenic | 35.0% | |
| ! | ATATTCTCCGAGTTCAAGTT+TGG | - | chr6_2:67995485-67995504 | Msa0925190:intron | 35.0% |
| ! | TATTCTCCGAGTTCAAGTTT+GGG | - | chr6_2:67995486-67995505 | Msa0925190:intron | 35.0% |
| CTCTTCTTAACAGAAACATC+AGG | + | chr6_2:67995528-67995547 | None:intergenic | 35.0% | |
| ! | CTGATGTTTCTGTTAAGAAG+AGG | - | chr6_2:67995526-67995545 | Msa0925190:intron | 35.0% |
| AAAAGTTGAAAGCAAGGAAG+AGG | - | chr6_2:67995890-67995909 | Msa0925190:intron | 35.0% | |
| !!! | GCTTTCAACTTTTTGGGTAA+GGG | + | chr6_2:67995925-67995944 | None:intergenic | 35.0% |
| !!! | TGCTTTCAACTTTTTGGGTA+AGG | + | chr6_2:67995926-67995945 | None:intergenic | 35.0% |
| ! | CTCTCTTGCTTTCAACTTTT+TGG | + | chr6_2:67995932-67995951 | None:intergenic | 35.0% |
| AAAAGTTGAAAGCAAGAGAG+AGG | - | chr6_2:67995932-67995951 | Msa0925190:intron | 35.0% | |
| AAGCAAGAGAGAGGAATTTA+AGG | - | chr6_2:67995941-67995960 | Msa0925190:intron | 35.0% | |
| CAGAAATATTAGAGTCCGAA+AGG | - | chr6_2:67996054-67996073 | Msa0925190:intron | 35.0% | |
| CTTTAGTAACTGCTTCCTTT+CGG | + | chr6_2:67996072-67996091 | None:intergenic | 35.0% | |
| AGAATAATCGTGCTCAAATG+AGG | - | chr6_2:67996108-67996127 | Msa0925190:intron | 35.0% | |
| GAATAATCGTGCTCAAATGA+GGG | - | chr6_2:67996109-67996128 | Msa0925190:intron | 35.0% | |
| TCAAAAGAGAATGAGTGCAA+AGG | - | chr6_2:67996182-67996201 | Msa0925190:intron | 35.0% | |
| ACGATACGCAATTTGAAGAA+CGG | - | chr6_2:67996564-67996583 | Msa0925190:intron | 35.0% | |
| GCATATTGAAGTACAAGTCA+AGG | - | chr6_2:67996655-67996674 | Msa0925190:intron | 35.0% | |
| ! | AAAGTGTTTCCCTGTTAACT+CGG | + | chr6_2:67996726-67996745 | None:intergenic | 35.0% |
| ATTGACGAGGAAAAAGAATC+GGG | - | chr6_2:67996764-67996783 | Msa0925190:intron | 35.0% | |
| ! | AACTCTTGCGTTTTTATCCA+TGG | - | chr6_2:67996943-67996962 | Msa0925190:CDS | 35.0% |
| !! | TACGAGGGTGCTAAAATATT+TGG | - | chr6_2:67997140-67997159 | Msa0925190:CDS | 35.0% |
| !! | AGATCCATCTAGACTTGTTT+TGG | - | chr6_2:67997314-67997333 | Msa0925190:CDS | 35.0% |
| GTTCTTCTAACAGATAGATG+TGG | + | chr6_2:67997407-67997426 | None:intergenic | 35.0% | |
| CGTACACAAGGTTTAATAGT+TGG | + | chr6_2:67997444-67997463 | None:intergenic | 35.0% | |
| AAAAATTCTTCGGCTGTTCT+TGG | - | chr6_2:67997519-67997538 | Msa0925190:intron | 35.0% | |
| ATGTGTCTCATTCATGACTA+GGG | + | chr6_2:67998140-67998159 | None:intergenic | 35.0% | |
| ! | TGGGTTATATTTGGTGATTC+AGG | + | chr6_2:67998204-67998223 | None:intergenic | 35.0% |
| TGCAGAAATCCTAGATTCTT+GGG | + | chr6_2:67998299-67998318 | None:intergenic | 35.0% | |
| TTTATGCCTTCATCATCACT+TGG | + | chr6_2:67998341-67998360 | None:intergenic | 35.0% | |
| AGGCACATAAATCCAAAACA+TGG | + | chr6_2:67998561-67998580 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+CGG | - | chr6_2:67998607-67998626 | Msa0925190:CDS | 35.0% | |
| ! | AATCTCTGATTCGTGATTCA+TGG | - | chr6_2:67998721-67998740 | Msa0925190:CDS | 35.0% |
| AAGATAGAAATTGTCCCTTC+TGG | - | chr6_2:67998854-67998873 | Msa0925190:CDS | 35.0% | |
| !! | GTCATTTTCTGTGATATCAG+TGG | - | chr6_2:67998878-67998897 | Msa0925190:CDS | 35.0% |
| TATTTACGACTATCATGCAG+GGG | + | chr6_2:67999499-67999518 | None:intergenic | 35.0% | |
| ATGAACTTGAACTCAGGATA+AGG | - | chr6_2:67999526-67999545 | Msa0925190:intron | 35.0% | |
| AGATCAAGAAATCGCTATTC+TGG | - | chr6_2:67999553-67999572 | Msa0925190:intron | 35.0% | |
| GATCAAGAAATCGCTATTCT+GGG | - | chr6_2:67999554-67999573 | Msa0925190:intron | 35.0% | |
| CATGAGCTAAACCAACATAA+AGG | - | chr6_2:67999653-67999672 | Msa0925190:intron | 35.0% | |
| TTAGGGCTATCTGTATTTCT+TGG | - | chr6_2:67999748-67999767 | Msa0925190:intron | 35.0% | |
| TATGAAGTACAGACACTCCA+CGG | - | chr6_2:67995038-67995057 | Msa0925190:CDS | 40.0% | |
| TTTATAGGCCCTATGAAGCA+CGG | + | chr6_2:67995185-67995204 | None:intergenic | 40.0% | |
| GCAACTGGAAGGAAAAATCT+TGG | + | chr6_2:67995268-67995287 | None:intergenic | 40.0% | |
| GATAAGCGAAACTTCTGTGT+TGG | - | chr6_2:67995321-67995340 | Msa0925190:CDS | 40.0% | |
| !! | TTCTGTGTTGGTGATGATGA+TGG | - | chr6_2:67995333-67995352 | Msa0925190:CDS | 40.0% |
| !! | TCTGTGTTGGTGATGATGAT+GGG | - | chr6_2:67995334-67995353 | Msa0925190:CDS | 40.0% |
| TAAAGGGCTCAATTCATGTG+AGG | - | chr6_2:67995368-67995387 | Msa0925190:intron | 40.0% | |
| AAAGGGCTCAATTCATGTGA+GGG | - | chr6_2:67995369-67995388 | Msa0925190:intron | 40.0% | |
| ATCCCATTCAGATGTGTTGA+GGG | - | chr6_2:67995398-67995417 | Msa0925190:intron | 40.0% | |
| TTCCCTCAACACATCTGAAT+GGG | + | chr6_2:67995403-67995422 | None:intergenic | 40.0% | |
| TCAAAGTCCTCACAAGAAAC+AGG | + | chr6_2:67995426-67995445 | None:intergenic | 40.0% | |
| CTTGAACTCGGAGAATATCT+TGG | + | chr6_2:67995483-67995502 | None:intergenic | 40.0% | |
| CATGTTCCCAAACTTGAACT+CGG | + | chr6_2:67995495-67995514 | None:intergenic | 40.0% | |
| ATACTACACTGCCAGTTAAG+AGG | - | chr6_2:67995559-67995578 | Msa0925190:intron | 40.0% | |
| TCTTCGCCGTGATCATAATA+TGG | + | chr6_2:67995639-67995658 | None:intergenic | 40.0% | |
| AAGCAAGGAAGAGGAACTTA+AGG | - | chr6_2:67995899-67995918 | Msa0925190:intron | 40.0% | |
| TGCATCAAGCTCTTTCTCTT+TGG | + | chr6_2:67996009-67996028 | None:intergenic | 40.0% | |
| CGAAAGGAAGCAGTTACTAA+AGG | - | chr6_2:67996070-67996089 | Msa0925190:intron | 40.0% | |
| GCGACTTGAAGATCATGTTA+AGG | - | chr6_2:67996151-67996170 | Msa0925190:intron | 40.0% | |
| AAGAGAATGAGTGCAAAGGA+CGG | - | chr6_2:67996186-67996205 | Msa0925190:intron | 40.0% | |
| !! | TCGAAGGAGAAGTACTTAGA+AGG | - | chr6_2:67996224-67996243 | Msa0925190:intron | 40.0% |
| TCAAAAGAGATGCAGCTTGA+AGG | - | chr6_2:67996392-67996411 | Msa0925190:intron | 40.0% | |
| TCAATTCATGCTCCTTCACT+CGG | + | chr6_2:67996460-67996479 | None:intergenic | 40.0% | |
| TTGAAAGCAGAAGAACTCGA+AGG | - | chr6_2:67996476-67996495 | Msa0925190:intron | 40.0% | |
| ATACGCAATTTGAAGAACGG+TGG | - | chr6_2:67996567-67996586 | Msa0925190:intron | 40.0% | |
| GAGTCAAAGCTGAACGAATT+TGG | - | chr6_2:67996683-67996702 | Msa0925190:intron | 40.0% | |
| TCAAAGCTGAACGAATTTGG+CGG | - | chr6_2:67996686-67996705 | Msa0925190:intron | 40.0% | |
| AAGTGTTTCCCTGTTAACTC+GGG | + | chr6_2:67996725-67996744 | None:intergenic | 40.0% | |
| ! | TGCGTTTTTATCCATGGCTA+AGG | - | chr6_2:67996949-67996968 | Msa0925190:CDS | 40.0% |
| ATGATGCTTCGATCAATACG+AGG | - | chr6_2:67997124-67997143 | Msa0925190:CDS | 40.0% | |
| TGATGCTTCGATCAATACGA+GGG | - | chr6_2:67997125-67997144 | Msa0925190:CDS | 40.0% | |
| ATATGCAGTTGCATCTCACA+TGG | - | chr6_2:67997176-67997195 | Msa0925190:CDS | 40.0% | |
| TGGTAGAACAAGTTTGCAGT+TGG | - | chr6_2:67997221-67997240 | Msa0925190:CDS | 40.0% | |
| ! | TTTTCTCCCTTCTTACACAG+TGG | + | chr6_2:67997363-67997382 | None:intergenic | 40.0% |
| !!! | AACGCTTTTTCTCGTACACA+AGG | + | chr6_2:67997456-67997475 | None:intergenic | 40.0% |
| TGTGTCTCATTCATGACTAG+GGG | + | chr6_2:67998139-67998158 | None:intergenic | 40.0% | |
| CATGTGTCTCATTCATGACT+AGG | + | chr6_2:67998141-67998160 | None:intergenic | 40.0% | |
| GTGCAGAAATCCTAGATTCT+TGG | + | chr6_2:67998300-67998319 | None:intergenic | 40.0% | |
| GCGTAAAAGGGGTTATTCTA+TGG | - | chr6_2:67998419-67998438 | Msa0925190:CDS | 40.0% | |
| ATGACGTAAATCACGCAGAT+GGG | + | chr6_2:67998490-67998509 | None:intergenic | 40.0% | |
| AATGACGTAAATCACGCAGA+TGG | + | chr6_2:67998491-67998510 | None:intergenic | 40.0% | |
| !!! | GTGCTTTGTGTTTTTTCGAC+TGG | - | chr6_2:67998535-67998554 | Msa0925190:CDS | 40.0% |
| !! | TTTTTCGACTGGCCATGTTT+TGG | - | chr6_2:67998546-67998565 | Msa0925190:CDS | 40.0% |
| TTCGTGATTCATGGTTCAAC+TGG | - | chr6_2:67998730-67998749 | Msa0925190:CDS | 40.0% | |
| !! | TCATGGTTCAACTGGTTTGA+TGG | - | chr6_2:67998738-67998757 | Msa0925190:CDS | 40.0% |
| TTCCTCTTTGCTACAACACT+CGG | - | chr6_2:67998794-67998813 | Msa0925190:CDS | 40.0% | |
| CACAGAAAATGACACCAGAA+GGG | + | chr6_2:67998871-67998890 | None:intergenic | 40.0% | |
| TCACAGAAAATGACACCAGA+AGG | + | chr6_2:67998872-67998891 | None:intergenic | 40.0% | |
| TATCAGTGGCAAGAGAATCA+AGG | - | chr6_2:67998892-67998911 | Msa0925190:CDS | 40.0% | |
| GTGAGAACTGTGAGAATTGT+TGG | + | chr6_2:67999129-67999148 | None:intergenic | 40.0% | |
| GCCCTAACAAAAGTAGTAGT+AGG | + | chr6_2:67999735-67999754 | None:intergenic | 40.0% | |
| ! | TCGTATCGGTATTGGACACA+TGG | + | chr6_2:67995075-67995094 | None:intergenic | 45.0% |
| CATCCCATTCAGATGTGTTG+AGG | - | chr6_2:67995397-67995416 | Msa0925190:intron | 45.0% | |
| GTTCCCTCAACACATCTGAA+TGG | + | chr6_2:67995404-67995423 | None:intergenic | 45.0% | |
| ! | GGAGAATATCTTGGTGACAC+AGG | + | chr6_2:67995474-67995493 | None:intergenic | 45.0% |
| GCTGGGAAAAGTTGAAAGCA+AGG | - | chr6_2:67995884-67995903 | Msa0925190:intron | 45.0% | |
| AGAGAATGAGTGCAAAGGAC+GGG | - | chr6_2:67996187-67996206 | Msa0925190:intron | 45.0% | |
| ATCAAGAGCGAAGCAGATGA+AGG | - | chr6_2:67996265-67996284 | Msa0925190:intron | 45.0% | |
| TCAAGAGCGAAGCAGATGAA+GGG | - | chr6_2:67996266-67996285 | Msa0925190:intron | 45.0% | |
| ! | GCAAGTTGAAGGACGAGAAA+TGG | - | chr6_2:67996361-67996380 | Msa0925190:intron | 45.0% |
| TGAAGGCCAGAAAAAGGAGT+TGG | - | chr6_2:67996409-67996428 | Msa0925190:intron | 45.0% | |
| AGAACTCGAAGGTCGAGTTA+AGG | - | chr6_2:67996487-67996506 | Msa0925190:intron | 45.0% | |
| ! | TTCTTACACAGTGGAGTGTC+GGG | + | chr6_2:67997354-67997373 | None:intergenic | 45.0% |
| CTTCTTACACAGTGGAGTGT+CGG | + | chr6_2:67997355-67997374 | None:intergenic | 45.0% | |
| GACACTCCACTGTGTAAGAA+GGG | - | chr6_2:67997354-67997373 | Msa0925190:CDS | 45.0% | |
| TGCTCAACACAAGACAGCTA+TGG | - | chr6_2:67997620-67997639 | Msa0925190:intron | 45.0% | |
| GTGTCTCATTCATGACTAGG+GGG | + | chr6_2:67998138-67998157 | None:intergenic | 45.0% | |
| ! | TTGGTGATTCAGGAATGCAC+TGG | + | chr6_2:67998194-67998213 | None:intergenic | 45.0% |
| ! | ACGCAGATGGGTTCATGATT+TGG | + | chr6_2:67998478-67998497 | None:intergenic | 45.0% |
| ACACATGCAGAATGCGAAAC+TGG | - | chr6_2:67999370-67999389 | Msa0925190:intron | 45.0% | |
| ! | GCAGGGGTATATGTCTGAAA+TGG | + | chr6_2:67999483-67999502 | None:intergenic | 45.0% |
| AGACAACAGCCTAGAATCTG+AGG | - | chr6_2:67999598-67999617 | Msa0925190:intron | 45.0% | |
| GTAGCAGATCCTCAGATTCT+AGG | + | chr6_2:67999610-67999629 | None:intergenic | 45.0% | |
| ! | TGCAAGACAAGGGAAGTACA+TGG | + | chr6_2:67999776-67999795 | None:intergenic | 45.0% |
| ACATGGACACGTCTAATCCG+TGG | + | chr6_2:67995058-67995077 | None:intergenic | 50.0% | |
| ! | GTGTCGTGTCGTATCGGTAT+TGG | + | chr6_2:67995083-67995102 | None:intergenic | 50.0% |
| GTGTCTGTGTCGTGTCGTAT+CGG | + | chr6_2:67995089-67995108 | None:intergenic | 50.0% | |
| CAGCGTATCAGTGTTGTGTC+CGG | - | chr6_2:67995156-67995175 | Msa0925190:intron | 50.0% | |
| ! | GAGGGAACCTGTTTCTTGTG+AGG | - | chr6_2:67995416-67995435 | Msa0925190:intron | 50.0% |
| GCAGCTTGAAGGCCAGAAAA+AGG | - | chr6_2:67996403-67996422 | Msa0925190:intron | 50.0% | |
| AAAATGGGAAGGCCGAGTGA+AGG | - | chr6_2:67996445-67996464 | Msa0925190:intron | 50.0% | |
| CGAAGGTCGAGTTAAGGAGA+TGG | - | chr6_2:67996493-67996512 | Msa0925190:intron | 50.0% | |
| CCTGTTAACTCGGGCTTCTT+CGG | + | chr6_2:67996716-67996735 | None:intergenic | 50.0% | |
| CGAAGAAGCCCGAGTTAACA+GGG | - | chr6_2:67996714-67996733 | Msa0925190:intron | 50.0% | |
| !! | TCTTACACAGTGGAGTGTCG+GGG | + | chr6_2:67997353-67997372 | None:intergenic | 50.0% |
| CGACACTCCACTGTGTAAGA+AGG | - | chr6_2:67997353-67997372 | Msa0925190:CDS | 50.0% | |
| ! | ATGGAGCTGTTTGAGACCCT+CGG | - | chr6_2:67997639-67997658 | Msa0925190:intron | 50.0% |
| ! | TCTAGGATTTCTGCACCGTG+TGG | - | chr6_2:67998304-67998323 | Msa0925190:CDS | 50.0% |
| ! | GCAGAGCCAAGTGATGATGA+AGG | - | chr6_2:67998332-67998351 | Msa0925190:CDS | 50.0% |
| ATCTGAGGATCTGCTACGAG+AGG | - | chr6_2:67999613-67999632 | Msa0925190:intron | 50.0% | |
| TCCGGTGTCCGTGCTTCATA+GGG | - | chr6_2:67995174-67995193 | Msa0925190:intron | 55.0% | |
| GAATGAGTGCAAAGGACGGG+TGG | - | chr6_2:67996190-67996209 | Msa0925190:intron | 55.0% | |
| GGTGGAGGAACTTGAGTCGA+AGG | - | chr6_2:67996208-67996227 | Msa0925190:intron | 55.0% | |
| CCGAAGAAGCCCGAGTTAAC+AGG | - | chr6_2:67996713-67996732 | Msa0925190:intron | 55.0% | |
| GTTGAAGCTAGCGCGTGATG+TGG | - | chr6_2:67997473-67997492 | Msa0925190:intron | 55.0% | |
| !! | TTGGCTCTGCAGCTACCACA+CGG | + | chr6_2:67998322-67998341 | None:intergenic | 55.0% |
| ! | CGCCGAGTGTTGTAGCAAAG+AGG | + | chr6_2:67998799-67998818 | None:intergenic | 55.0% |
| GTCCGGTGTCCGTGCTTCAT+AGG | - | chr6_2:67995173-67995192 | Msa0925190:intron | 60.0% | |
| GCCCTATGAAGCACGGACAC+CGG | + | chr6_2:67995178-67995197 | None:intergenic | 60.0% | |
| TGAGTGCAAAGGACGGGTGG+AGG | - | chr6_2:67996193-67996212 | Msa0925190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 67994740 | 67999880 | 67994740 | ID=Msa0925190;Name=Msa0925190 |
| chr6_2 | mRNA | 67994740 | 67999880 | 67994740 | ID=Msa0925190-mRNA-1;Parent=Msa0925190;Name=Msa0925190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=140|1|1|1|0.4|0.16|6|159|765 |
| chr6_2 | exon | 67994740 | 67994881 | 67994740 | ID=Msa0925190-mRNA-1:exon:10794;Parent=Msa0925190-mRNA-1 |
| chr6_2 | exon | 67994921 | 67995078 | 67994921 | ID=Msa0925190-mRNA-1:exon:10793;Parent=Msa0925190-mRNA-1 |
| chr6_2 | exon | 67995184 | 67995356 | 67995184 | ID=Msa0925190-mRNA-1:exon:10792;Parent=Msa0925190-mRNA-1 |
| chr6_2 | exon | 67996939 | 67997436 | 67996939 | ID=Msa0925190-mRNA-1:exon:10791;Parent=Msa0925190-mRNA-1 |
| chr6_2 | exon | 67997835 | 67999350 | 67997835 | ID=Msa0925190-mRNA-1:exon:10790;Parent=Msa0925190-mRNA-1 |
| chr6_2 | exon | 67999771 | 67999880 | 67999771 | ID=Msa0925190-mRNA-1:exon:10789;Parent=Msa0925190-mRNA-1 |
| chr6_2 | five_prime_UTR | 67999771 | 67999880 | 67999771 | ID=Msa0925190-mRNA-1:five_prime_utr;Parent=Msa0925190-mRNA-1 |
| chr6_2 | five_prime_UTR | 67999321 | 67999350 | 67999321 | ID=Msa0925190-mRNA-1:five_prime_utr;Parent=Msa0925190-mRNA-1 |
| chr6_2 | CDS | 67997835 | 67999320 | 67997835 | ID=Msa0925190-mRNA-1:cds;Parent=Msa0925190-mRNA-1 |
| chr6_2 | CDS | 67996939 | 67997436 | 67996939 | ID=Msa0925190-mRNA-1:cds;Parent=Msa0925190-mRNA-1 |
| chr6_2 | CDS | 67995184 | 67995356 | 67995184 | ID=Msa0925190-mRNA-1:cds;Parent=Msa0925190-mRNA-1 |
| chr6_2 | CDS | 67994938 | 67995078 | 67994938 | ID=Msa0925190-mRNA-1:cds;Parent=Msa0925190-mRNA-1 |
| chr6_2 | three_prime_UTR | 67994921 | 67994937 | 67994921 | ID=Msa0925190-mRNA-1:three_prime_utr;Parent=Msa0925190-mRNA-1 |
| chr6_2 | three_prime_UTR | 67994740 | 67994881 | 67994740 | ID=Msa0925190-mRNA-1:three_prime_utr;Parent=Msa0925190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
