AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1138430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138430 MtrunA17_Chr8g0341721 92.952 227 13 1 1 224 41 267 2.96e-158 439
Msa1138430 MtrunA17_Chr8g0341741 80.702 228 36 3 1 224 41 264 1.01e-133 377
Msa1138430 MtrunA17_Chr8g0341701 81.735 219 37 1 1 216 41 259 1.31e-133 376
Msa1138430 MtrunA17_Chr8g0341731 79.545 220 41 2 1 216 41 260 1.89e-130 369
Msa1138430 MtrunA17_Chr2g0330511 73.756 221 54 2 1 218 40 259 4.97e-119 339
Msa1138430 MtrunA17_Chr2g0309111 72.072 222 59 1 1 219 84 305 3.86e-116 334
Msa1138430 MtrunA17_Chr2g0330491 56.502 223 90 2 1 216 40 262 1.10e-88 263
Msa1138430 MtrunA17_Chr8g0389271 58.794 199 78 3 1 195 38 236 2.71e-81 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138430 AT1G17710.1 63.063 222 73 3 1 213 43 264 4.28e-101 295
Msa1138430 AT1G17710.2 61.818 220 75 3 3 213 13 232 3.09e-97 284
Msa1138430 AT1G73010.1 64.615 195 64 2 1 190 50 244 1.14e-92 274
Msa1138430 AT4G29530.1 51.471 204 95 1 1 200 40 243 1.32e-76 231
Msa1138430 AT4G29530.2 51.269 197 92 1 8 200 36 232 4.49e-73 222

Find 61 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATTATTCTGTGATTAAT+TGG 0.161270 7_4:+7898803 None:intergenic
ATCACTCCAACCATGAATTT+TGG 0.169708 7_4:+7898282 None:intergenic
TGCTCTCAAAATTGGTTCTT+TGG 0.208038 7_4:+7899258 None:intergenic
TATGCCTTTCAATTCTCTTA+TGG 0.235071 7_4:-7899019 Msa1138430:intron
TCTCTCAGTGCTCTCAAAAT+TGG 0.235886 7_4:+7899250 None:intergenic
TTGATTGTGATAGTGATAAT+TGG 0.238396 7_4:-7899085 Msa1138430:five_prime_UTR
ATTAAATCAGCTTATGCATT+AGG 0.247679 7_4:-7898776 Msa1138430:CDS
CTTGTCAAAGCCAAAATTCA+TGG 0.270050 7_4:-7898292 Msa1138430:CDS
GATTTGGAAGAATGCATATT+TGG 0.270829 7_4:-7898083 Msa1138430:three_prime_UTR
TAGTGATAATTGGGTGAATT+AGG 0.294368 7_4:-7899075 Msa1138430:five_prime_UTR
ATTATACCTTGCACATGTTT+GGG 0.294621 7_4:+7898567 None:intergenic
GATTATACCTTGCACATGTT+TGG 0.298306 7_4:+7898566 None:intergenic
TTAAATCAGCTTATGCATTA+GGG 0.371086 7_4:-7898775 Msa1138430:CDS
CACAAGAAATAGAAGACAAA+TGG 0.381654 7_4:+7899224 None:intergenic
ATGATGGAGCTTCATTCAAA+TGG 0.391230 7_4:-7898866 Msa1138430:CDS
GAGATTGACTGGTGTAGATT+TGG 0.397546 7_4:-7898099 Msa1138430:three_prime_UTR
TGCAGTCAGATGCAATGAAT+TGG 0.398816 7_4:+7898197 None:intergenic
ATCTACCTTGGTGATGGTGC+TGG 0.412159 7_4:-7898409 Msa1138430:CDS
CCTTCTTGATTAACATAACC+AGG 0.424126 7_4:+7898653 None:intergenic
ATGCATTAGGGTGTGATTTG+AGG 0.437272 7_4:-7898763 Msa1138430:CDS
TAAGGCAATGACTGGTGAAC+GGG 0.438722 7_4:+7898150 None:intergenic
TTGGAGTGATGGAGAAGAAT+TGG 0.439096 7_4:-7898269 Msa1138430:CDS
CACACTGGAAAATTCTTCCT+TGG 0.458582 7_4:+7898340 None:intergenic
TGATTGTGATAGTGATAATT+GGG 0.461891 7_4:-7899084 Msa1138430:five_prime_UTR
TCTGAGATTAACACTAATCC+TGG 0.477118 7_4:-7898671 Msa1138430:CDS
AAAATTCATGGTTGGAGTGA+TGG 0.481230 7_4:-7898280 Msa1138430:CDS
AACAAGAGGTTTATCTACCT+TGG 0.481752 7_4:-7898421 Msa1138430:CDS
TGAAGAAAAGATGAATTTGA+TGG 0.485483 7_4:-7898014 Msa1138430:three_prime_UTR
TACAAGCTTATGTTATATCA+TGG 0.488232 7_4:-7897991 Msa1138430:three_prime_UTR
ACAAGAAATAGAAGACAAAT+GGG 0.488463 7_4:+7899225 None:intergenic
TTAGAATTGTTGAGATTGAC+TGG 0.490810 7_4:-7898110 Msa1138430:three_prime_UTR
AACCTCTTCAATCTCTTCGA+TGG 0.499828 7_4:+7898838 None:intergenic
CCTGGTTATGTTAATCAAGA+AGG 0.499879 7_4:-7898653 Msa1138430:CDS
CTTTCTCTAAGTCTCAAGCT+AGG 0.506175 7_4:+7898376 None:intergenic
TGATGGAGCTTCATTCAAAT+GGG 0.508401 7_4:-7898865 Msa1138430:CDS
GCTTTGTTGAAGTCATGATA+AGG 0.514128 7_4:+7898614 None:intergenic
GACTTCAACAAAGCTTCTCA+TGG 0.521531 7_4:-7898605 Msa1138430:CDS
TTTACAGGACAGAATGATGA+TGG 0.525460 7_4:-7898882 Msa1138430:intron
AAGAGAATTGAAAGGCATAG+TGG 0.528235 7_4:+7899023 None:intergenic
TAAGAATTTAAGGCAATGAC+TGG 0.535490 7_4:+7898142 None:intergenic
AGGTTTATCTACCTTGGTGA+TGG 0.549393 7_4:-7898415 Msa1138430:CDS
GTTGATTAACAAAATTGTGA+TGG 0.556897 7_4:-7898230 Msa1138430:CDS
AAGGAGTTGATTGAACAAAT+CGG 0.557882 7_4:+7899047 None:intergenic
TCAAAGCCAAAATTCATGGT+TGG 0.559853 7_4:-7898288 Msa1138430:CDS
AGAGAATTGAAAGGCATAGT+GGG 0.565487 7_4:+7899024 None:intergenic
AGATTGAAGAGGTTCTTCAA+AGG 0.570752 7_4:-7898829 Msa1138430:CDS
AATTGAAAGGCATAGTGGGA+AGG 0.577724 7_4:+7899028 None:intergenic
TTATACCTTGCACATGTTTG+GGG 0.581671 7_4:+7898568 None:intergenic
GATGAATGAATTCTATACAT+CGG 0.584905 7_4:-7898053 Msa1138430:three_prime_UTR
AAAGTGACTTTGTGATGCCA+AGG 0.591849 7_4:-7898357 Msa1138430:CDS
TTTCTCTAAGTCTCAAGCTA+GGG 0.592139 7_4:+7898377 None:intergenic
ACATCGGATACAATGTATGT+TGG 0.600490 7_4:-7898037 Msa1138430:three_prime_UTR
TTAAGGCAATGACTGGTGAA+CGG 0.600752 7_4:+7898149 None:intergenic
TATACCTTGCACATGTTTGG+GGG 0.606803 7_4:+7898569 None:intergenic
GATTAACAAAATTGTGATGG+AGG 0.620153 7_4:-7898227 Msa1138430:CDS
AACCATCGAAGAGATTGAAG+AGG 0.624606 7_4:-7898840 Msa1138430:CDS
CATACCATAAGAGAATTGAA+AGG 0.628950 7_4:+7899015 None:intergenic
TTGCATATCAAATCCCACAC+TGG 0.630294 7_4:+7898325 None:intergenic
TTTGAGTGGTGAGAAAGTGA+AGG 0.640246 7_4:+7899164 None:intergenic
GATTGTTAGTGATGCTAATG+CGG 0.651747 7_4:-7898741 Msa1138430:CDS
AGTCTCCAGCACCATCACCA+AGG 0.694728 7_4:+7898404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTTTTTTTCTTTGAG+TGG + chr7_4:7898079-7898098 None:intergenic 20.0%
!!! ATTAACTTGTGTTTTGATTT+TGG - chr7_4:7898319-7898338 Msa1138430:CDS 20.0%
!! GATATTATTCTGTGATTAAT+TGG + chr7_4:7898426-7898445 None:intergenic 20.0%
!! ACACAAAAACTAAGAATTTA+AGG + chr7_4:7899097-7899116 None:intergenic 20.0%
!!! ACATTTTTTTTTTCTTTGAG+TGG + chr7_4:7898079-7898098 None:intergenic 20.0%
!!! ATTAACTTGTGTTTTGATTT+TGG - chr7_4:7898319-7898338 Msa1138430:CDS 20.0%
!! GATATTATTCTGTGATTAAT+TGG + chr7_4:7898426-7898445 None:intergenic 20.0%
!! ACACAAAAACTAAGAATTTA+AGG + chr7_4:7899097-7899116 None:intergenic 20.0%
! ACAAGAAATAGAAGACAAAT+GGG + chr7_4:7898004-7898023 None:intergenic 25.0%
!! TTGATTGTGATAGTGATAAT+TGG - chr7_4:7898141-7898160 Msa1138430:CDS 25.0%
!! TGATTGTGATAGTGATAATT+GGG - chr7_4:7898142-7898161 Msa1138430:CDS 25.0%
!!! GTTTTGATTTTGGAATTTAC+AGG - chr7_4:7898329-7898348 Msa1138430:CDS 25.0%
! ATTAAATCAGCTTATGCATT+AGG - chr7_4:7898450-7898469 Msa1138430:CDS 25.0%
! TTAAATCAGCTTATGCATTA+GGG - chr7_4:7898451-7898470 Msa1138430:CDS 25.0%
!!! AACACAATTTTGAAGCATTT+GGG - chr7_4:7898516-7898535 Msa1138430:intron 25.0%
!!! TCTTGTTCGAAATTGATTTT+TGG + chr7_4:7898792-7898811 None:intergenic 25.0%
! AAAAATCAATTTCGAACAAG+AGG - chr7_4:7898791-7898810 Msa1138430:CDS 25.0%
! GTTGATTAACAAAATTGTGA+TGG - chr7_4:7898996-7899015 Msa1138430:intron 25.0%
! GATGAATGAATTCTATACAT+CGG - chr7_4:7899173-7899192 Msa1138430:five_prime_UTR 25.0%
! TGAAGAAAAGATGAATTTGA+TGG - chr7_4:7899212-7899231 Msa1138430:five_prime_UTR 25.0%
! TACAAGCTTATGTTATATCA+TGG - chr7_4:7899235-7899254 Msa1138430:five_prime_UTR 25.0%
!! TCATGGATCAAACTTTTTAT+TGG - chr7_4:7899252-7899271 Msa1138430:five_prime_UTR 25.0%
! ACAAGAAATAGAAGACAAAT+GGG + chr7_4:7898004-7898023 None:intergenic 25.0%
!! TTGATTGTGATAGTGATAAT+TGG - chr7_4:7898141-7898160 Msa1138430:CDS 25.0%
!! TGATTGTGATAGTGATAATT+GGG - chr7_4:7898142-7898161 Msa1138430:CDS 25.0%
!!! GTTTTGATTTTGGAATTTAC+AGG - chr7_4:7898329-7898348 Msa1138430:CDS 25.0%
! ATTAAATCAGCTTATGCATT+AGG - chr7_4:7898450-7898469 Msa1138430:CDS 25.0%
! TTAAATCAGCTTATGCATTA+GGG - chr7_4:7898451-7898470 Msa1138430:CDS 25.0%
!!! AACACAATTTTGAAGCATTT+GGG - chr7_4:7898516-7898535 Msa1138430:intron 25.0%
!!! TCTTGTTCGAAATTGATTTT+TGG + chr7_4:7898792-7898811 None:intergenic 25.0%
! AAAAATCAATTTCGAACAAG+AGG - chr7_4:7898791-7898810 Msa1138430:CDS 25.0%
! GTTGATTAACAAAATTGTGA+TGG - chr7_4:7898996-7899015 Msa1138430:intron 25.0%
! GATGAATGAATTCTATACAT+CGG - chr7_4:7899173-7899192 Msa1138430:five_prime_UTR 25.0%
! TGAAGAAAAGATGAATTTGA+TGG - chr7_4:7899212-7899231 Msa1138430:five_prime_UTR 25.0%
! TACAAGCTTATGTTATATCA+TGG - chr7_4:7899235-7899254 Msa1138430:five_prime_UTR 25.0%
!! TCATGGATCAAACTTTTTAT+TGG - chr7_4:7899252-7899271 Msa1138430:five_prime_UTR 25.0%
CACAAGAAATAGAAGACAAA+TGG + chr7_4:7898005-7898024 None:intergenic 30.0%
!!! TGAACGTGTTTTTTCATTCT+GGG - chr7_4:7898023-7898042 Msa1138430:three_prime_UTR 30.0%
TAGTGATAATTGGGTGAATT+AGG - chr7_4:7898151-7898170 Msa1138430:CDS 30.0%
! AAGGAGTTGATTGAACAAAT+CGG + chr7_4:7898182-7898201 None:intergenic 30.0%
TATGCCTTTCAATTCTCTTA+TGG - chr7_4:7898207-7898226 Msa1138430:CDS 30.0%
CATACCATAAGAGAATTGAA+AGG + chr7_4:7898214-7898233 None:intergenic 30.0%
!!! CAACACAATTTTGAAGCATT+TGG - chr7_4:7898515-7898534 Msa1138430:intron 30.0%
ATTATACCTTGCACATGTTT+GGG + chr7_4:7898662-7898681 None:intergenic 30.0%
GATTAACAAAATTGTGATGG+AGG - chr7_4:7898999-7899018 Msa1138430:intron 30.0%
! TAAGAATTTAAGGCAATGAC+TGG + chr7_4:7899087-7899106 None:intergenic 30.0%
TTAGAATTGTTGAGATTGAC+TGG - chr7_4:7899116-7899135 Msa1138430:five_prime_UTR 30.0%
GATTTGGAAGAATGCATATT+TGG - chr7_4:7899143-7899162 Msa1138430:five_prime_UTR 30.0%
CACAAGAAATAGAAGACAAA+TGG + chr7_4:7898005-7898024 None:intergenic 30.0%
!!! TGAACGTGTTTTTTCATTCT+GGG - chr7_4:7898023-7898042 Msa1138430:three_prime_UTR 30.0%
TAGTGATAATTGGGTGAATT+AGG - chr7_4:7898151-7898170 Msa1138430:CDS 30.0%
! AAGGAGTTGATTGAACAAAT+CGG + chr7_4:7898182-7898201 None:intergenic 30.0%
TATGCCTTTCAATTCTCTTA+TGG - chr7_4:7898207-7898226 Msa1138430:CDS 30.0%
CATACCATAAGAGAATTGAA+AGG + chr7_4:7898214-7898233 None:intergenic 30.0%
!!! CAACACAATTTTGAAGCATT+TGG - chr7_4:7898515-7898534 Msa1138430:intron 30.0%
ATTATACCTTGCACATGTTT+GGG + chr7_4:7898662-7898681 None:intergenic 30.0%
GATTAACAAAATTGTGATGG+AGG - chr7_4:7898999-7899018 Msa1138430:intron 30.0%
! TAAGAATTTAAGGCAATGAC+TGG + chr7_4:7899087-7899106 None:intergenic 30.0%
TTAGAATTGTTGAGATTGAC+TGG - chr7_4:7899116-7899135 Msa1138430:five_prime_UTR 30.0%
GATTTGGAAGAATGCATATT+TGG - chr7_4:7899143-7899162 Msa1138430:five_prime_UTR 30.0%
! TGCTCTCAAAATTGGTTCTT+TGG + chr7_4:7897971-7897990 None:intergenic 35.0%
!!! GTGAACGTGTTTTTTCATTC+TGG - chr7_4:7898022-7898041 Msa1138430:three_prime_UTR 35.0%
! AGAGAATTGAAAGGCATAGT+GGG + chr7_4:7898205-7898224 None:intergenic 35.0%
! AAGAGAATTGAAAGGCATAG+TGG + chr7_4:7898206-7898225 None:intergenic 35.0%
TTTACAGGACAGAATGATGA+TGG - chr7_4:7898344-7898363 Msa1138430:CDS 35.0%
! ATGATGGAGCTTCATTCAAA+TGG - chr7_4:7898360-7898379 Msa1138430:CDS 35.0%
TGATGGAGCTTCATTCAAAT+GGG - chr7_4:7898361-7898380 Msa1138430:CDS 35.0%
AGATTGAAGAGGTTCTTCAA+AGG - chr7_4:7898397-7898416 Msa1138430:CDS 35.0%
GATTGTTAGTGATGCTAATG+CGG - chr7_4:7898485-7898504 Msa1138430:intron 35.0%
! TCTGAGATTAACACTAATCC+TGG - chr7_4:7898555-7898574 Msa1138430:intron 35.0%
CCTTCTTGATTAACATAACC+AGG + chr7_4:7898576-7898595 None:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG - chr7_4:7898573-7898592 Msa1138430:intron 35.0%
! GCTTTGTTGAAGTCATGATA+AGG + chr7_4:7898615-7898634 None:intergenic 35.0%
TTATACCTTGCACATGTTTG+GGG + chr7_4:7898661-7898680 None:intergenic 35.0%
GATTATACCTTGCACATGTT+TGG + chr7_4:7898663-7898682 None:intergenic 35.0%
AACAAGAGGTTTATCTACCT+TGG - chr7_4:7898805-7898824 Msa1138430:CDS 35.0%
TTTCTCTAAGTCTCAAGCTA+GGG + chr7_4:7898852-7898871 None:intergenic 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG - chr7_4:7898888-7898907 Msa1138430:intron 35.0%
CTTGTCAAAGCCAAAATTCA+TGG - chr7_4:7898934-7898953 Msa1138430:intron 35.0%
TCAAAGCCAAAATTCATGGT+TGG - chr7_4:7898938-7898957 Msa1138430:intron 35.0%
! ATCACTCCAACCATGAATTT+TGG + chr7_4:7898947-7898966 None:intergenic 35.0%
AAAATTCATGGTTGGAGTGA+TGG - chr7_4:7898946-7898965 Msa1138430:intron 35.0%
ACATCGGATACAATGTATGT+TGG - chr7_4:7899189-7899208 Msa1138430:five_prime_UTR 35.0%
! TGCTCTCAAAATTGGTTCTT+TGG + chr7_4:7897971-7897990 None:intergenic 35.0%
!!! GTGAACGTGTTTTTTCATTC+TGG - chr7_4:7898022-7898041 Msa1138430:three_prime_UTR 35.0%
! AGAGAATTGAAAGGCATAGT+GGG + chr7_4:7898205-7898224 None:intergenic 35.0%
! AAGAGAATTGAAAGGCATAG+TGG + chr7_4:7898206-7898225 None:intergenic 35.0%
TTTACAGGACAGAATGATGA+TGG - chr7_4:7898344-7898363 Msa1138430:CDS 35.0%
! ATGATGGAGCTTCATTCAAA+TGG - chr7_4:7898360-7898379 Msa1138430:CDS 35.0%
TGATGGAGCTTCATTCAAAT+GGG - chr7_4:7898361-7898380 Msa1138430:CDS 35.0%
AGATTGAAGAGGTTCTTCAA+AGG - chr7_4:7898397-7898416 Msa1138430:CDS 35.0%
GATTGTTAGTGATGCTAATG+CGG - chr7_4:7898485-7898504 Msa1138430:intron 35.0%
! TCTGAGATTAACACTAATCC+TGG - chr7_4:7898555-7898574 Msa1138430:intron 35.0%
CCTTCTTGATTAACATAACC+AGG + chr7_4:7898576-7898595 None:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG - chr7_4:7898573-7898592 Msa1138430:intron 35.0%
! GCTTTGTTGAAGTCATGATA+AGG + chr7_4:7898615-7898634 None:intergenic 35.0%
TTATACCTTGCACATGTTTG+GGG + chr7_4:7898661-7898680 None:intergenic 35.0%
GATTATACCTTGCACATGTT+TGG + chr7_4:7898663-7898682 None:intergenic 35.0%
AACAAGAGGTTTATCTACCT+TGG - chr7_4:7898805-7898824 Msa1138430:CDS 35.0%
TTTCTCTAAGTCTCAAGCTA+GGG + chr7_4:7898852-7898871 None:intergenic 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG - chr7_4:7898888-7898907 Msa1138430:intron 35.0%
CTTGTCAAAGCCAAAATTCA+TGG - chr7_4:7898934-7898953 Msa1138430:intron 35.0%
TCAAAGCCAAAATTCATGGT+TGG - chr7_4:7898938-7898957 Msa1138430:intron 35.0%
! ATCACTCCAACCATGAATTT+TGG + chr7_4:7898947-7898966 None:intergenic 35.0%
AAAATTCATGGTTGGAGTGA+TGG - chr7_4:7898946-7898965 Msa1138430:intron 35.0%
ACATCGGATACAATGTATGT+TGG - chr7_4:7899189-7899208 Msa1138430:five_prime_UTR 35.0%
TCTCTCAGTGCTCTCAAAAT+TGG + chr7_4:7897979-7897998 None:intergenic 40.0%
TTTGAGTGGTGAGAAAGTGA+AGG + chr7_4:7898065-7898084 None:intergenic 40.0%
! AATTGAAAGGCATAGTGGGA+AGG + chr7_4:7898201-7898220 None:intergenic 40.0%
AACCATCGAAGAGATTGAAG+AGG - chr7_4:7898386-7898405 Msa1138430:CDS 40.0%
AACCTCTTCAATCTCTTCGA+TGG + chr7_4:7898391-7898410 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG - chr7_4:7898463-7898482 Msa1138430:intron 40.0%
GACTTCAACAAAGCTTCTCA+TGG - chr7_4:7898621-7898640 Msa1138430:CDS 40.0%
TATACCTTGCACATGTTTGG+GGG + chr7_4:7898660-7898679 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG - chr7_4:7898811-7898830 Msa1138430:CDS 40.0%
CTTTCTCTAAGTCTCAAGCT+AGG + chr7_4:7898853-7898872 None:intergenic 40.0%
AAAGTGACTTTGTGATGCCA+AGG - chr7_4:7898869-7898888 Msa1138430:CDS 40.0%
CACACTGGAAAATTCTTCCT+TGG + chr7_4:7898889-7898908 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG - chr7_4:7898887-7898906 Msa1138430:intron 40.0%
TTGCATATCAAATCCCACAC+TGG + chr7_4:7898904-7898923 None:intergenic 40.0%
! TTGGAGTGATGGAGAAGAAT+TGG - chr7_4:7898957-7898976 Msa1138430:intron 40.0%
TGCAGTCAGATGCAATGAAT+TGG + chr7_4:7899032-7899051 None:intergenic 40.0%
TTAAGGCAATGACTGGTGAA+CGG + chr7_4:7899080-7899099 None:intergenic 40.0%
GAGATTGACTGGTGTAGATT+TGG - chr7_4:7899127-7899146 Msa1138430:five_prime_UTR 40.0%
TCTCTCAGTGCTCTCAAAAT+TGG + chr7_4:7897979-7897998 None:intergenic 40.0%
TTTGAGTGGTGAGAAAGTGA+AGG + chr7_4:7898065-7898084 None:intergenic 40.0%
! AATTGAAAGGCATAGTGGGA+AGG + chr7_4:7898201-7898220 None:intergenic 40.0%
AACCATCGAAGAGATTGAAG+AGG - chr7_4:7898386-7898405 Msa1138430:CDS 40.0%
AACCTCTTCAATCTCTTCGA+TGG + chr7_4:7898391-7898410 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG - chr7_4:7898463-7898482 Msa1138430:intron 40.0%
GACTTCAACAAAGCTTCTCA+TGG - chr7_4:7898621-7898640 Msa1138430:CDS 40.0%
TATACCTTGCACATGTTTGG+GGG + chr7_4:7898660-7898679 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG - chr7_4:7898811-7898830 Msa1138430:CDS 40.0%
CTTTCTCTAAGTCTCAAGCT+AGG + chr7_4:7898853-7898872 None:intergenic 40.0%
AAAGTGACTTTGTGATGCCA+AGG - chr7_4:7898869-7898888 Msa1138430:CDS 40.0%
CACACTGGAAAATTCTTCCT+TGG + chr7_4:7898889-7898908 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG - chr7_4:7898887-7898906 Msa1138430:intron 40.0%
TTGCATATCAAATCCCACAC+TGG + chr7_4:7898904-7898923 None:intergenic 40.0%
! TTGGAGTGATGGAGAAGAAT+TGG - chr7_4:7898957-7898976 Msa1138430:intron 40.0%
TGCAGTCAGATGCAATGAAT+TGG + chr7_4:7899032-7899051 None:intergenic 40.0%
TTAAGGCAATGACTGGTGAA+CGG + chr7_4:7899080-7899099 None:intergenic 40.0%
GAGATTGACTGGTGTAGATT+TGG - chr7_4:7899127-7899146 Msa1138430:five_prime_UTR 40.0%
TAAGGCAATGACTGGTGAAC+GGG + chr7_4:7899079-7899098 None:intergenic 45.0%
TAAGGCAATGACTGGTGAAC+GGG + chr7_4:7899079-7899098 None:intergenic 45.0%
!! TAAATTATTATTATTATTTC+AGG - chr7_4:7898747-7898766 Msa1138430:CDS 5.0%
!! AAATTATTATTATTATTTCA+GGG - chr7_4:7898748-7898767 Msa1138430:CDS 5.0%
!! TAAATTATTATTATTATTTC+AGG - chr7_4:7898747-7898766 Msa1138430:CDS 5.0%
!! AAATTATTATTATTATTTCA+GGG - chr7_4:7898748-7898767 Msa1138430:CDS 5.0%
TTGTCCCCCAAACATGTGCA+AGG - chr7_4:7898653-7898672 Msa1138430:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG - chr7_4:7898817-7898836 Msa1138430:CDS 50.0%
TTGTCCCCCAAACATGTGCA+AGG - chr7_4:7898653-7898672 Msa1138430:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG - chr7_4:7898817-7898836 Msa1138430:CDS 50.0%
AGTCTCCAGCACCATCACCA+AGG + chr7_4:7898825-7898844 None:intergenic 55.0%
AGTCTCCAGCACCATCACCA+AGG + chr7_4:7898825-7898844 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 7897965 7899283 7897965 ID=Msa1138430;Name=Msa1138430
chr7_4 mRNA 7897965 7899283 7897965 ID=Msa1138430-mRNA-1;Parent=Msa1138430;Name=Msa1138430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=243|1|1|1|1|1|3|176|227
chr7_4 exon 7897965 7898479 7897965 ID=Msa1138430-mRNA-1:exon:2180;Parent=Msa1138430-mRNA-1
chr7_4 exon 7898574 7898897 7898574 ID=Msa1138430-mRNA-1:exon:2179;Parent=Msa1138430-mRNA-1
chr7_4 exon 7899020 7899283 7899020 ID=Msa1138430-mRNA-1:exon:2178;Parent=Msa1138430-mRNA-1
chr7_4 five_prime_UTR 7899041 7899283 7899041 ID=Msa1138430-mRNA-1:five_prime_utr;Parent=Msa1138430-mRNA-1
chr7_4 CDS 7899020 7899040 7899020 ID=Msa1138430-mRNA-1:cds;Parent=Msa1138430-mRNA-1
chr7_4 CDS 7898574 7898897 7898574 ID=Msa1138430-mRNA-1:cds;Parent=Msa1138430-mRNA-1
chr7_4 CDS 7898141 7898479 7898141 ID=Msa1138430-mRNA-1:cds;Parent=Msa1138430-mRNA-1
chr7_4 three_prime_UTR 7897965 7898140 7897965 ID=Msa1138430-mRNA-1:three_prime_utr;Parent=Msa1138430-mRNA-1
Gene Sequence

>Msa1138430

ATGCCTTTCAATTCTCTTATGGACAGAATGATGATGGAGCTTCATTCAAATGGGAAAACCATCGAAGAGATTGAAGAGGTTCTTCAAAGGATTCCAATTAATCACAGAATAATATCTGCTATTAAATCAGCTTATGCATTAGGGTGTGATTTGAGGATTGTTAGTGATGCTAATGCGGTTTTCATCAACACAATTTTGAAGCATTTGGGAATAAGTGAATGCTTTTCTGAGATTAACACTAATCCTGGTTATGTTAATCAAGAAGGAAGATTAAAAGTTATGCCTTATCATGACTTCAACAAAGCTTCTCATGGTTGCACTCTTTGTCCCCCAAACATGTGCAAGGGTTTAATCATTGATAGAATCCAAAAATCAATTTCGAACAAGAGGTTTATCTACCTTGGTGATGGTGCTGGAGACTATTGCCCTAGCTTGAGACTTAGAGAAAGTGACTTTGTGATGCCAAGGAAGAATTTTCCAGTGTGGGATTTGATATGCAAAGATACTTCACTTGTCAAAGCCAAAATTCATGGTTGGAGTGATGGAGAAGAATTGGAACAAACTTTGATGATGTTGATTAACAAAATTGTGATGGAGGAACATGTCCAATTCATTGCATCTGACTGCAAGCTAGCTACAAACTCTATTTGTTCCCGTTCACCAGTCATTGCCTTAAATTCTTAG
Protein sequence

>Msa1138430

MPFNSLMDRMMMELHSNGKTIEEIEEVLQRIPINHRIISAIKSAYALGCDLRIVSDANAVFINTILKHLGISECFSEINTNPGYVNQEGRLKVMPYHDFNKASHGCTLCPPNMCKGLIIDRIQKSISNKRFIYLGDGAGDYCPSLRLRESDFVMPRKNFPVWDLICKDTSLVKAKIHGWSDGEELEQTLMMLINKIVMEEHVQFIASDCKLATNSICSRSPVIALNS*