AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139630 MtrunA17_Chr7g0218571 92.254 284 15 1 1 277 255 538 0.0 554
Msa1139630 MtrunA17_Chr6g0454101 82.394 284 43 1 1 277 250 533 6.49e-173 488
Msa1139630 MtrunA17_Chr2g0319311 56.028 282 117 1 1 275 259 540 4.99e-120 353
Msa1139630 MtrunA17_Chr4g0076011 51.203 291 126 1 1 275 182 472 9.63e-113 333
Msa1139630 MtrunA17_Chr3g0097091 46.316 285 131 5 1 274 255 528 3.44e-85 264
Msa1139630 MtrunA17_Chr2g0283461 45.000 280 128 6 1 273 271 531 1.06e-82 258
Msa1139630 MtrunA17_Chr7g0235161 44.128 281 135 5 1 274 293 558 1.34e-80 253
Msa1139630 MtrunA17_Chr8g0351091 43.110 283 140 6 1 276 344 612 2.20e-79 251
Msa1139630 MtrunA17_Chr7g0246371 42.756 283 139 5 1 276 398 664 5.88e-79 251
Msa1139630 MtrunA17_Chr2g0290961 44.484 281 131 6 1 274 403 665 3.26e-78 249
Msa1139630 MtrunA17_Chr8g0383241 43.463 283 132 6 1 276 230 491 4.46e-78 244
Msa1139630 MtrunA17_Chr3g0138381 41.696 283 144 4 1 276 397 665 1.02e-74 240
Msa1139630 MtrunA17_Chr6g0456071 42.349 281 139 5 1 273 287 552 6.49e-72 230
Msa1139630 MtrunA17_Chr4g0061711 40.860 279 139 6 1 272 273 532 5.88e-70 224
Msa1139630 MtrunA17_Chr2g0308241 37.722 281 149 5 1 274 273 534 2.33e-63 207
Msa1139630 MtrunA17_Chr2g0277591 39.068 279 120 7 1 272 271 506 2.74e-62 204
Msa1139630 MtrunA17_Chr7g0260711 31.786 280 144 5 4 275 413 653 2.47e-48 169
Msa1139630 MtrunA17_Chr1g0184751 36.364 209 124 2 74 275 392 598 1.66e-40 147
Msa1139630 MtrunA17_Chr4g0076331 39.130 207 82 4 79 275 1 173 1.14e-39 136
Msa1139630 MtrunA17_Chr7g0245621 35.514 214 105 6 75 274 449 643 1.72e-30 120
Msa1139630 MtrunA17_Chr4g0066331 30.288 208 112 9 80 266 145 340 2.52e-21 92.0
Msa1139630 MtrunA17_Chr7g0259321 27.805 205 116 7 80 264 151 343 2.25e-18 83.6
Msa1139630 MtrunA17_Chr5g0414981 30.978 184 101 8 80 247 180 353 2.26e-18 84.3
Msa1139630 MtrunA17_Chr3g0127611 29.570 186 100 7 80 247 140 312 1.06e-17 81.6
Msa1139630 MtrunA17_Chr7g0269751 27.805 205 133 7 46 246 137 330 6.53e-17 79.7
Msa1139630 MtrunA17_Chr6g0451981 28.571 182 108 6 80 246 165 339 5.38e-16 77.0
Msa1139630 MtrunA17_Chr3g0141321 29.348 184 104 8 80 247 139 312 1.73e-15 75.5
Msa1139630 MtrunA17_Chr1g0196511 27.778 198 125 6 77 265 159 347 6.44e-14 70.9
Msa1139630 MtrunA17_Chr8g0373671 25.946 185 109 6 80 246 142 316 1.22e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139630 AT3G01040.2 81.272 283 46 1 1 276 250 532 3.92e-176 496
Msa1139630 AT3G01040.3 81.272 283 46 1 1 276 250 532 3.92e-176 496
Msa1139630 AT5G15470.1 80.212 283 49 1 1 276 250 532 6.70e-176 496
Msa1139630 AT3G01040.1 80.469 256 43 1 28 276 244 499 4.86e-155 442
Msa1139630 AT5G54690.1 55.986 284 118 1 1 277 252 535 4.03e-121 357
Msa1139630 AT3G25140.1 45.000 280 132 5 1 273 292 556 4.21e-81 254
Msa1139630 AT3G58790.2 44.876 283 144 4 1 274 127 406 8.69e-81 249
Msa1139630 AT3G58790.1 44.876 283 144 4 1 274 259 538 1.46e-79 250
Msa1139630 AT3G61130.1 41.696 283 141 5 1 276 408 673 1.04e-78 251
Msa1139630 AT4G38270.2 43.463 283 139 4 1 276 408 676 4.84e-78 249
Msa1139630 AT4G38270.1 43.463 283 139 4 1 276 412 680 5.70e-78 249
Msa1139630 AT5G47780.1 43.060 281 135 5 1 274 352 614 6.16e-78 248
Msa1139630 AT1G18580.1 42.294 279 137 6 1 272 273 534 4.87e-74 236
Msa1139630 AT2G20810.1 42.908 282 133 7 1 273 272 534 5.54e-70 225
Msa1139630 AT2G46480.3 42.403 283 142 5 1 276 272 540 1.59e-69 224
Msa1139630 AT2G46480.4 42.403 283 142 5 1 276 285 553 2.56e-69 224
Msa1139630 AT3G02350.1 43.446 267 129 5 15 274 308 559 6.53e-66 215
Msa1139630 AT2G46480.2 37.809 283 130 5 1 276 272 515 1.00e-57 192
Msa1139630 AT2G46480.1 37.809 283 130 5 1 276 285 528 1.42e-57 192
Msa1139630 AT1G06780.1 34.643 280 138 6 4 275 346 588 3.81e-50 174
Msa1139630 AT1G06780.2 34.643 280 138 6 4 275 359 601 6.40e-50 174
Msa1139630 AT2G30575.1 38.426 216 122 3 68 276 399 610 4.10e-47 166
Msa1139630 AT2G38650.2 34.286 175 102 3 100 274 456 617 3.27e-31 122
Msa1139630 AT2G38650.1 34.286 175 102 3 100 274 456 617 3.27e-31 122
Msa1139630 AT4G02130.3 27.638 199 124 5 80 264 150 342 3.62e-18 83.6
Msa1139630 AT4G02130.1 27.638 199 124 5 80 264 150 342 3.62e-18 83.6
Msa1139630 AT4G02130.2 27.638 199 124 5 80 264 150 342 3.62e-18 83.6
Msa1139630 AT1G70090.1 27.237 257 134 12 51 264 116 362 1.17e-17 82.4
Msa1139630 AT1G70090.2 27.237 257 134 12 51 264 116 362 1.17e-17 82.4
Msa1139630 AT3G06260.1 26.442 208 119 8 80 266 150 344 1.48e-17 81.6
Msa1139630 AT3G28340.1 29.670 182 111 5 78 247 153 329 1.82e-17 81.6
Msa1139630 AT1G24170.1 29.412 204 115 9 80 264 172 365 4.59e-17 80.9
Msa1139630 AT1G13250.1 30.769 182 103 5 80 247 144 316 4.85e-16 77.4
Msa1139630 AT3G62660.1 27.374 179 113 4 80 247 164 336 5.83e-16 77.4
Msa1139630 AT1G02720.1 26.829 205 131 5 80 273 165 361 1.64e-15 75.9
Msa1139630 AT1G02720.2 26.829 205 131 5 80 273 165 361 1.64e-15 75.9
Msa1139630 AT2G38650.3 40.476 84 38 2 100 183 456 527 5.20e-13 69.3
Msa1139630 AT1G19300.1 26.776 183 108 7 80 246 150 322 5.62e-13 68.6
Msa1139630 AT3G50760.1 26.111 180 112 6 79 247 143 312 5.29e-12 65.5

Find 161 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACATAATTGTTTCATTT+TGG 0.100792 7_4:+10216798 Msa1139630:three_prime_UTR
TGGCGTATTCTCTTCTAATT+TGG 0.129256 7_4:+10216627 Msa1139630:three_prime_UTR
ACAAACAAGACACTGAAATT+TGG 0.143086 7_4:+10215938 Msa1139630:three_prime_UTR
TTGAACATCTTCAGCCATTT+TGG 0.166080 7_4:+10215182 Msa1139630:CDS
CATGCGTTGATTGCATTTAA+AGG 0.203469 7_4:+10215025 Msa1139630:CDS
AGATATGTACTTTGGGCTTC+TGG 0.206684 7_4:-10212831 None:intergenic
AATTATGGAAAACGATAATT+TGG 0.207616 7_4:-10216909 None:intergenic
TAACTCCAAACCACGTTAAT+TGG 0.231060 7_4:+10215793 Msa1139630:three_prime_UTR
ATGGAGACAAGTTGCTTAAA+TGG 0.236059 7_4:+10216039 Msa1139630:three_prime_UTR
ATGAAAATCAAACAAAATTA+TGG 0.249857 7_4:-10216924 None:intergenic
TCTCAATGAAGATCTTCTTT+TGG 0.263264 7_4:+10216573 Msa1139630:three_prime_UTR
ATACTATTATTGATCTTCTA+TGG 0.263987 7_4:+10215543 Msa1139630:three_prime_UTR
GAAGCTGTAGAAAATCAAAA+TGG 0.269468 7_4:+10212722 Msa1139630:CDS
CCTTTGATTTCAACTACAAT+AGG 0.270761 7_4:-10212653 None:intergenic
ACGCGACTTGTCTGCACTTT+GGG 0.274770 7_4:+10214041 Msa1139630:CDS
ATCCCCTTCCTGCAAAGTTC+TGG 0.283122 7_4:-10216336 None:intergenic
AAGATTCCATAGTTGAATAT+TGG 0.284120 7_4:+10215578 Msa1139630:three_prime_UTR
TCTAGTCCTTTACTTTACTA+TGG 0.294932 7_4:+10216212 Msa1139630:three_prime_UTR
TCAAAACTCACAAGATTTAT+CGG 0.298293 7_4:+10215766 Msa1139630:three_prime_UTR
GGCGTATTCTCTTCTAATTT+GGG 0.298742 7_4:+10216628 Msa1139630:three_prime_UTR
CTGAATTGGTGCCTTGTATC+TGG 0.301037 7_4:+10216767 Msa1139630:three_prime_UTR
CAAACAAGACACTGAAATTT+GGG 0.309224 7_4:+10215939 Msa1139630:three_prime_UTR
CTAGCTCATTCTCTTTCTTA+AGG 0.317157 7_4:-10216144 None:intergenic
TAAGAGAAACTTATCATTCC+TGG 0.318236 7_4:+10214259 Msa1139630:CDS
TTCCTAGCTTCCACATTGTT+AGG 0.326112 7_4:-10214994 None:intergenic
CGCCATTTACCTTTCCTTCA+AGG 0.327824 7_4:-10214071 None:intergenic
GATTTCTTTAGGAACATATA+TGG 0.328562 7_4:+10216882 Msa1139630:three_prime_UTR
TTATTAGGGAAGATTTCTTT+AGG 0.337493 7_4:+10216871 Msa1139630:three_prime_UTR
CAAAACATATTTCTTGCAAT+AGG 0.338026 7_4:+10216006 Msa1139630:three_prime_UTR
GACCTTGAAGGAAAGGTAAA+TGG 0.341478 7_4:+10214069 Msa1139630:CDS
TATTCTCCAATATTCAACTA+TGG 0.341554 7_4:-10215584 None:intergenic
TTGACATACTTGGTCCAAAA+TGG 0.341875 7_4:-10215196 None:intergenic
TGCGTTTAAGAATTCTGAAT+TGG 0.354824 7_4:+10216753 Msa1139630:three_prime_UTR
CTTTGATTTCAACTACAATA+GGG 0.368912 7_4:-10212652 None:intergenic
ACCTGTTTCATCAATCTTGT+TGG 0.369660 7_4:+10215632 Msa1139630:three_prime_UTR
TCCCCTCATATCAAATCATT+TGG 0.373039 7_4:+10214167 Msa1139630:CDS
CGGCAGCGGACTATGATTCT+TGG 0.378716 7_4:-10215252 None:intergenic
CGTAACCAATTAACGTGGTT+TGG 0.380062 7_4:-10215798 None:intergenic
AAAACATATTTCTTGCAATA+GGG 0.383275 7_4:+10216007 Msa1139630:three_prime_UTR
AATGAGTTCCTCATTTATAA+TGG 0.388771 7_4:+10216607 Msa1139630:three_prime_UTR
CCAGCCAGCCAGAACTTTGC+AGG 0.389806 7_4:+10216328 Msa1139630:three_prime_UTR
TTAAGCAACTTGTCTCCATT+TGG 0.390437 7_4:-10216035 None:intergenic
TCTTGGCACATGGTTGGCTT+AGG 0.393502 7_4:+10215070 Msa1139630:CDS
GAGTTATTACAGTCTCTAAA+TGG 0.393922 7_4:+10215448 Msa1139630:three_prime_UTR
CTCTAGTCAACCAGTCAAAC+TGG 0.398268 7_4:-10212682 None:intergenic
TATGATGGAAATCATTTAGC+TGG 0.410207 7_4:+10212758 Msa1139630:CDS
CTTGCAGAGGAGAAGATGAT+TGG 0.415124 7_4:+10214103 Msa1139630:CDS
TACGTCCATGCACACTCATC+AGG 0.418925 7_4:-10214192 None:intergenic
TTGAGTAAAGATATGTACTT+TGG 0.419115 7_4:-10212839 None:intergenic
CTAGGGGTTGCTTTGATTGA+GGG 0.419525 7_4:+10216720 Msa1139630:three_prime_UTR
CTTTGGGAAATTGACCTTGA+AGG 0.420319 7_4:+10214057 Msa1139630:CDS
CCTGCAAAGTTCTGGCTGGC+TGG 0.428294 7_4:-10216328 None:intergenic
TTTGGGTTGTTACTATTTGA+AGG 0.429768 7_4:+10215956 Msa1139630:three_prime_UTR
AACGCGACTTGTCTGCACTT+TGG 0.431424 7_4:+10214040 Msa1139630:CDS
GGTCCAAATGATTTGATATG+AGG 0.436395 7_4:-10214170 None:intergenic
TAGAAAATCAAAATGGGATC+AGG 0.436638 7_4:+10212729 Msa1139630:CDS
GAGTTGGAGGACCCTAAAAC+CGG 0.445712 7_4:-10216545 None:intergenic
TAATTATTCTTGCAACTAGC+TGG 0.446206 7_4:+10216238 Msa1139630:three_prime_UTR
GAGTGATTCTGTGTTGCTGC+TGG 0.448682 7_4:-10216463 None:intergenic
ATTTGAATAATTGACATACT+TGG 0.448993 7_4:-10215206 None:intergenic
TGAGTAAAGATATGTACTTT+GGG 0.451858 7_4:-10212838 None:intergenic
TTCAAAGCCAGTTGGTAACC+AGG 0.456907 7_4:-10215164 None:intergenic
GGAATGAATATCTTCGATCT+TGG 0.464332 7_4:+10214216 Msa1139630:CDS
AAATCTTCCCTAATAAAATC+AGG 0.472781 7_4:-10216864 None:intergenic
ACTAGGGGTTGCTTTGATTG+AGG 0.473454 7_4:+10216719 Msa1139630:three_prime_UTR
GCAATCTTGTTAATATCTCC+TGG 0.473484 7_4:-10216092 None:intergenic
ACCAACAAGATTGATGAAAC+AGG 0.477905 7_4:-10215633 None:intergenic
AGCCAGAACTTTGCAGGAAG+GGG 0.481304 7_4:+10216334 Msa1139630:three_prime_UTR
GCTTGGATTCATTATTGCTA+GGG 0.482078 7_4:+10216678 Msa1139630:three_prime_UTR
AAGGCATTCACCAGTTTGAC+TGG 0.483682 7_4:+10212672 Msa1139630:CDS
TGGACTCGATTCACTAAGAT+TGG 0.485471 7_4:-10212783 None:intergenic
TGCAATAGGGCATTGCCAAA+TGG 0.490524 7_4:+10216020 Msa1139630:three_prime_UTR
CATCTATTTCGCCAGATACA+AGG 0.493525 7_4:-10216778 None:intergenic
GGAAATTGACCTTGAAGGAA+AGG 0.495339 7_4:+10214062 Msa1139630:CDS
CCTTCCTGCAAAGTTCTGGC+TGG 0.498484 7_4:-10216332 None:intergenic
AAGCTGTAGAAAATCAAAAT+GGG 0.500474 7_4:+10212723 Msa1139630:CDS
TTATCATTCCTGGCTTAAAG+AGG 0.501060 7_4:+10214269 Msa1139630:CDS
CAGCCAGAACTTTGCAGGAA+GGG 0.504412 7_4:+10216333 Msa1139630:three_prime_UTR
CATTGAGAACCCGGAGTTGG+AGG 0.506360 7_4:-10216558 None:intergenic
TCAAAACCCTGGTTACCAAC+TGG 0.506378 7_4:+10215157 Msa1139630:CDS
GAATGAGCTAGATGTAGCTT+CGG 0.507883 7_4:+10216156 Msa1139630:three_prime_UTR
TGTACAATAGTGAATATGAA+AGG 0.508963 7_4:+10215295 Msa1139630:three_prime_UTR
TTGCAGAGGAGAAGATGATT+GGG 0.512655 7_4:+10214104 Msa1139630:CDS
TTCATCCAATCGATCCCTCT+TGG 0.512998 7_4:+10215053 Msa1139630:CDS
TGCTTGGATTCATTATTGCT+AGG 0.522667 7_4:+10216677 Msa1139630:three_prime_UTR
GTCCAAATGATTTGATATGA+GGG 0.523698 7_4:-10214169 None:intergenic
CTTCATTGAGAACCCGGAGT+TGG 0.525832 7_4:-10216561 None:intergenic
TAAATACTACTGCAAACAAA+GGG 0.528120 7_4:-10217010 None:intergenic
TTCTCCTCTGCAAGTTTCCA+CGG 0.529247 7_4:-10214094 None:intergenic
TGCAATCAACGCATGAGGTA+GGG 0.530685 7_4:-10215017 None:intergenic
ACTAGCTGGTTAAATTAGCC+AGG 0.530938 7_4:+10216252 Msa1139630:three_prime_UTR
GGAAAATATGTACAAGAGAG+GGG 0.532116 7_4:-10216989 None:intergenic
GGGATCAGGAATTACTATGA+TGG 0.532599 7_4:+10212743 Msa1139630:CDS
ATTTGATGCGTGTAATCACT+AGG 0.533370 7_4:+10216702 Msa1139630:three_prime_UTR
CGAAGTTGCAGATGTAGTCC+TGG 0.535626 7_4:-10216270 None:intergenic
GATCCCTCTTGGCACATGGT+TGG 0.535847 7_4:+10215064 Msa1139630:CDS
GTACAATAGTGAATATGAAA+GGG 0.543451 7_4:+10215296 Msa1139630:three_prime_UTR
ATGCAATCAACGCATGAGGT+AGG 0.544130 7_4:-10215018 None:intergenic
AGAATACGCCATTATAAATG+AGG 0.545677 7_4:-10216615 None:intergenic
TCTTAGTTTGAGTTACAACC+AGG 0.553481 7_4:+10216074 Msa1139630:three_prime_UTR
GCGTATTCTCTTCTAATTTG+GGG 0.553966 7_4:+10216629 Msa1139630:three_prime_UTR
ATAAATACTACTGCAAACAA+AGG 0.555819 7_4:-10217011 None:intergenic
CTTATGCGGGTATGCACTCG+TGG 0.556287 7_4:+10212609 None:intergenic
TTATAACCATAGTAAAGTAA+AGG 0.556632 7_4:-10216218 None:intergenic
TATGAGTGAGTGGCAGCAGA+AGG 0.558677 7_4:+10217033 Msa1139630:three_prime_UTR
CCAGCCAGAACTTTGCAGGA+AGG 0.559947 7_4:+10216332 Msa1139630:three_prime_UTR
CCTATTGTAGTTGAAATCAA+AGG 0.559965 7_4:+10212653 Msa1139630:CDS
TGAGTGAGTGGCAGCAGAAG+GGG 0.559989 7_4:+10217035 Msa1139630:three_prime_UTR
AACCTAACAATGTGGAAGCT+AGG 0.560299 7_4:+10214992 Msa1139630:CDS
ATGTGCCAAGAGGGATCGAT+TGG 0.560966 7_4:-10215058 None:intergenic
ATGAGTGAGTGGCAGCAGAA+GGG 0.561022 7_4:+10217034 Msa1139630:three_prime_UTR
CGTATTCTCTTCTAATTTGG+GGG 0.561956 7_4:+10216630 Msa1139630:three_prime_UTR
CTGGTAGGTATATGCGCAGA+TGG 0.563571 7_4:-10212862 None:intergenic
GGGAAAATATGTACAAGAGA+GGG 0.563931 7_4:-10216990 None:intergenic
ACAATAGAGCTAGTCGGCAG+CGG 0.564775 7_4:-10215266 None:intergenic
TTTGATTTCAACTACAATAG+GGG 0.566287 7_4:-10212651 None:intergenic
CAAGTTGCTTAAATGGAACA+AGG 0.571185 7_4:+10216046 Msa1139630:three_prime_UTR
TTTGATGCGTGTAATCACTA+GGG 0.574434 7_4:+10216703 Msa1139630:three_prime_UTR
AAGATTGATGAAACAGGTCC+TGG 0.579216 7_4:-10215627 None:intergenic
ATATTGGAGAATAAACTGAA+TGG 0.579279 7_4:+10215594 Msa1139630:three_prime_UTR
TTGTTTGTGATTGATTCATG+TGG 0.580813 7_4:-10215923 None:intergenic
GATGAGTGTGCATGGACGTA+TGG 0.582392 7_4:+10214195 Msa1139630:CDS
ATCATGTGTATGATAACGCA+AGG 0.583153 7_4:-10215896 None:intergenic
GAAGATCTTCATTGAGAACC+CGG 0.584773 7_4:-10216567 None:intergenic
GTCATTCAGTAATTAAAACC+CGG 0.584825 7_4:+10216526 Msa1139630:three_prime_UTR
GTGTTGAGAACATTACTACT+AGG 0.585200 7_4:+10215654 Msa1139630:three_prime_UTR
AATCGATCCCTCTTGGCACA+TGG 0.589521 7_4:+10215060 Msa1139630:CDS
ACTAGGACAGTTAATTTGTG+AGG 0.594125 7_4:+10215671 Msa1139630:three_prime_UTR
ATAGTGAATATGAAAGGGAT+CGG 0.597848 7_4:+10215301 Msa1139630:three_prime_UTR
GATTTCAACTACAATAGGGG+AGG 0.600418 7_4:-10212648 None:intergenic
GAATATTGAGAACGTGAACA+AGG 0.602080 7_4:+10215108 Msa1139630:CDS
ATATCTTCGATCTTGGTGCA+TGG 0.602662 7_4:+10214223 Msa1139630:CDS
TCAAAGCCAGTTGGTAACCA+GGG 0.606623 7_4:-10215163 None:intergenic
GTAGTATTTATATGAGTGAG+TGG 0.615148 7_4:+10217023 Msa1139630:three_prime_UTR
AAGCCAACCATGTGCCAAGA+GGG 0.615400 7_4:-10215067 None:intergenic
AGGGAAAATATGTACAAGAG+AGG 0.620359 7_4:-10216991 None:intergenic
AATTTAGATGCAAATTTACG+TGG 0.628008 7_4:-10212803 None:intergenic
ACGTCCATGCACACTCATCA+GGG 0.632289 7_4:-10214191 None:intergenic
AATCAAACAATAGAGCTAGT+CGG 0.633478 7_4:-10215272 None:intergenic
GAAAATATGTACAAGAGAGG+GGG 0.634586 7_4:-10216988 None:intergenic
GAGTGAGTGGCAGCAGAAGG+GGG 0.635397 7_4:+10217036 Msa1139630:three_prime_UTR
TCGTTGTTCGAATGTTAACA+AGG 0.637124 7_4:+10216407 Msa1139630:three_prime_UTR
GAATCCAACCTACCTCTGGT+AGG 0.638773 7_4:-10212877 None:intergenic
TGAAGATGTTCAAAGCCAGT+TGG 0.639536 7_4:-10215172 None:intergenic
TTGATGCGTGTAATCACTAG+GGG 0.643048 7_4:+10216704 Msa1139630:three_prime_UTR
TCCAAATGATTTGATATGAG+GGG 0.652975 7_4:-10214168 None:intergenic
TGGACCCTGATGAGTGTGCA+TGG 0.653353 7_4:+10214187 Msa1139630:CDS
CTTCTCGATAGCAGAATCTG+AGG 0.658904 7_4:+10214966 Msa1139630:intron
AGTTGGAGGACCCTAAAACC+GGG 0.659071 7_4:-10216544 None:intergenic
TTAAATGCAATCAACGCATG+AGG 0.667883 7_4:-10215022 None:intergenic
AAAATATGTACAAGAGAGGG+GGG 0.678367 7_4:-10216987 None:intergenic
ACAACGGCCAGTCAAAACCC+TGG 0.684054 7_4:+10215146 Msa1139630:CDS
TGAGGTCAAACCTAACAATG+TGG 0.684783 7_4:+10214984 Msa1139630:CDS
TAAGCCAACCATGTGCCAAG+AGG 0.687884 7_4:-10215068 None:intergenic
GCCGTTGTAGTGAGTAACAG+CGG 0.690484 7_4:-10215131 None:intergenic
CGGGTCGTAACCAATTAACG+TGG 0.692373 7_4:-10215803 None:intergenic
GCCGCTGTTACTCACTACAA+CGG 0.698719 7_4:+10215130 Msa1139630:CDS
GGCGCCGTGGAAACTTGCAG+AGG 0.701048 7_4:+10214090 Msa1139630:CDS
AGGAAAGGTAAATGGCGCCG+TGG 0.717361 7_4:+10214077 Msa1139630:CDS
TCTGCGCATATACCTACCAG+AGG 0.745858 7_4:+10212865 Msa1139630:CDS
ATGTGTATGATAACGCAAGG+TGG 0.766747 7_4:-10215893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATTTATTGAAACT+TGG - chr7_4:10213627-10213646 None:intergenic 10.0%
!! AAAATGATAAACTAATCATA+AGG - chr7_4:10213541-10213560 None:intergenic 15.0%
!! TCAATAAATTTATATAGCTT+TGG + chr7_4:10213631-10213650 Msa1139630:intron 15.0%
!! TCATCCATAAATTAATTATA+AGG + chr7_4:10214394-10214413 Msa1139630:intron 15.0%
!! ATGAAAATCAAACAAAATTA+TGG - chr7_4:10216927-10216946 None:intergenic 15.0%
!!! TATTTGAACAACCATTTTAT+AGG - chr7_4:10212995-10213014 None:intergenic 20.0%
!! ACACAATATATTCTATGAAA+TGG - chr7_4:10213234-10213253 None:intergenic 20.0%
!! TTACAGATAAATAGTAATCT+TGG - chr7_4:10213295-10213314 None:intergenic 20.0%
!!! TTTTTCTTATTGTCATTTTC+TGG + chr7_4:10213900-10213919 Msa1139630:intron 20.0%
!!! ATATAAACTCAGACTTATTT+TGG + chr7_4:10214301-10214320 Msa1139630:intron 20.0%
!! ACTGCCTTATAATTAATTTA+TGG - chr7_4:10214401-10214420 None:intergenic 20.0%
!! TTCAAATAAACAAAAGCAAA+AGG - chr7_4:10214456-10214475 None:intergenic 20.0%
!! AATTACATTCAATAGATACA+TGG - chr7_4:10214750-10214769 None:intergenic 20.0%
!!! GATTTTTACAACAATTTAGA+TGG - chr7_4:10214797-10214816 None:intergenic 20.0%
!!! TTTTTTCTGAAATTGAGATA+GGG + chr7_4:10214864-10214883 Msa1139630:intron 20.0%
!! ATTTGAATAATTGACATACT+TGG - chr7_4:10215209-10215228 None:intergenic 20.0%
!!! AAAAACATATCCTCTATTTT+TGG + chr7_4:10215507-10215526 Msa1139630:three_prime_UTR 20.0%
!! ATACTATTATTGATCTTCTA+TGG + chr7_4:10215543-10215562 Msa1139630:three_prime_UTR 20.0%
!!! AGGAAAAAAGAATTTTAGAA+GGG - chr7_4:10215702-10215721 None:intergenic 20.0%
!!! TAGGAAAAAAGAATTTTAGA+AGG - chr7_4:10215703-10215722 None:intergenic 20.0%
!! ATGAAAAGAAAAATGAACAT+AGG - chr7_4:10215722-10215741 None:intergenic 20.0%
!! AATTCAAAAAAACAATGATC+GGG - chr7_4:10215825-10215844 None:intergenic 20.0%
!! CAATTCAAAAAAACAATGAT+CGG - chr7_4:10215826-10215845 None:intergenic 20.0%
!! AAAACATATTTCTTGCAATA+GGG + chr7_4:10216007-10216026 Msa1139630:three_prime_UTR 20.0%
!! TTATAACCATAGTAAAGTAA+AGG - chr7_4:10216221-10216240 None:intergenic 20.0%
!! TCTTATTGAAAACAGAAAAA+AGG - chr7_4:10216386-10216405 None:intergenic 20.0%
!!! ATGACATAATTGTTTCATTT+TGG + chr7_4:10216798-10216817 Msa1139630:three_prime_UTR 20.0%
!!! TGACATAATTGTTTCATTTT+GGG + chr7_4:10216799-10216818 Msa1139630:three_prime_UTR 20.0%
!! AATTATGGAAAACGATAATT+TGG - chr7_4:10216912-10216931 None:intergenic 20.0%
!!! TTTTTCTTTGTGTTTTTTAG+AGG + chr7_4:10216951-10216970 Msa1139630:three_prime_UTR 20.0%
!!! TTTTCTTTGTGTTTTTTAGA+GGG + chr7_4:10216952-10216971 Msa1139630:three_prime_UTR 20.0%
!! TTTGATTTCAACTACAATAG+GGG - chr7_4:10212654-10212673 None:intergenic 25.0%
!! CTTTGATTTCAACTACAATA+GGG - chr7_4:10212655-10212674 None:intergenic 25.0%
! AAGCTGTAGAAAATCAAAAT+GGG + chr7_4:10212723-10212742 Msa1139630:CDS 25.0%
! AATTTAGATGCAAATTTACG+TGG - chr7_4:10212806-10212825 None:intergenic 25.0%
! TGAGTAAAGATATGTACTTT+GGG - chr7_4:10212841-10212860 None:intergenic 25.0%
! TTGAGTAAAGATATGTACTT+TGG - chr7_4:10212842-10212861 None:intergenic 25.0%
! GAGATAAAGTTGTCATAAAA+TGG - chr7_4:10213009-10213028 None:intergenic 25.0%
!! ATACACTTCTTTGTCTTTTT+CGG + chr7_4:10213098-10213117 Msa1139630:intron 25.0%
! CTATCATTTATTTCACAAAG+AGG - chr7_4:10213168-10213187 None:intergenic 25.0%
! TATTGTGTTGAATGTAACAT+AGG + chr7_4:10213246-10213265 Msa1139630:intron 25.0%
! ATTGTGTTGAATGTAACATA+GGG + chr7_4:10213247-10213266 Msa1139630:intron 25.0%
!! TTCAACAATAGCATTTTTGA+TGG + chr7_4:10213869-10213888 Msa1139630:intron 25.0%
! AAAATGAGAGAACAATTGAT+TGG + chr7_4:10214489-10214508 Msa1139630:intron 25.0%
! CTATCTCAATTTCAGAAAAA+AGG - chr7_4:10214865-10214884 None:intergenic 25.0%
!!! CTTTTTTCTGAAATTGAGAT+AGG + chr7_4:10214863-10214882 Msa1139630:intron 25.0%
! TGTACAATAGTGAATATGAA+AGG + chr7_4:10215295-10215314 Msa1139630:three_prime_UTR 25.0%
! GTACAATAGTGAATATGAAA+GGG + chr7_4:10215296-10215315 Msa1139630:three_prime_UTR 25.0%
! AAGATTCCATAGTTGAATAT+TGG + chr7_4:10215578-10215597 Msa1139630:three_prime_UTR 25.0%
! TATTCTCCAATATTCAACTA+TGG - chr7_4:10215587-10215606 None:intergenic 25.0%
! ATATTGGAGAATAAACTGAA+TGG + chr7_4:10215594-10215613 Msa1139630:three_prime_UTR 25.0%
!!! AAAAAAGAATTTTAGAAGGG+GGG - chr7_4:10215699-10215718 None:intergenic 25.0%
!!! GAAAAAAGAATTTTAGAAGG+GGG - chr7_4:10215700-10215719 None:intergenic 25.0%
!!! GGAAAAAAGAATTTTAGAAG+GGG - chr7_4:10215701-10215720 None:intergenic 25.0%
! TCAAAACTCACAAGATTTAT+CGG + chr7_4:10215766-10215785 Msa1139630:three_prime_UTR 25.0%
!!! CGATCATTGTTTTTTTGAAT+TGG + chr7_4:10215824-10215843 Msa1139630:three_prime_UTR 25.0%
! CAAAACATATTTCTTGCAAT+AGG + chr7_4:10216006-10216025 Msa1139630:three_prime_UTR 25.0%
! AATGAGTTCCTCATTTATAA+TGG + chr7_4:10216607-10216626 Msa1139630:three_prime_UTR 25.0%
!! GTTCTTTCTTCTCATATTTT+TGG + chr7_4:10216829-10216848 Msa1139630:three_prime_UTR 25.0%
!!! TTTCTTCTCATATTTTTGGT+GGG + chr7_4:10216833-10216852 Msa1139630:three_prime_UTR 25.0%
!!! ATGATTTGCCTGATTTTATT+AGG + chr7_4:10216856-10216875 Msa1139630:three_prime_UTR 25.0%
!!! TGATTTGCCTGATTTTATTA+GGG + chr7_4:10216857-10216876 Msa1139630:three_prime_UTR 25.0%
! AAATCTTCCCTAATAAAATC+AGG - chr7_4:10216867-10216886 None:intergenic 25.0%
! TTATTAGGGAAGATTTCTTT+AGG + chr7_4:10216871-10216890 Msa1139630:three_prime_UTR 25.0%
!! GATTTCTTTAGGAACATATA+TGG + chr7_4:10216882-10216901 Msa1139630:three_prime_UTR 25.0%
! TAAATACTACTGCAAACAAA+GGG - chr7_4:10217013-10217032 None:intergenic 25.0%
! ATAAATACTACTGCAAACAA+AGG - chr7_4:10217014-10217033 None:intergenic 25.0%
! CCTTTGATTTCAACTACAAT+AGG - chr7_4:10212656-10212675 None:intergenic 30.0%
CCTATTGTAGTTGAAATCAA+AGG + chr7_4:10212653-10212672 Msa1139630:CDS 30.0%
GAAGCTGTAGAAAATCAAAA+TGG + chr7_4:10212722-10212741 Msa1139630:CDS 30.0%
TAGAAAATCAAAATGGGATC+AGG + chr7_4:10212729-10212748 Msa1139630:CDS 30.0%
! TATGATGGAAATCATTTAGC+TGG + chr7_4:10212758-10212777 Msa1139630:CDS 30.0%
GAGATATGAAGAAACAAAAC+AGG - chr7_4:10212919-10212938 None:intergenic 30.0%
! CATTTTATAGGACAACTTGT+GGG - chr7_4:10213128-10213147 None:intergenic 30.0%
TCAACGAATTCAATTTACTG+TGG + chr7_4:10213342-10213361 Msa1139630:intron 30.0%
TTTACGTTCTCTTCAATTAC+TGG - chr7_4:10213412-10213431 None:intergenic 30.0%
AGTATTAACTGACCTACTAT+CGG - chr7_4:10213446-10213465 None:intergenic 30.0%
AATACTGTTAGTTGGTTAGA+CGG + chr7_4:10213460-10213479 Msa1139630:intron 30.0%
TATTGAAACTTGGCCAAAAA+AGG - chr7_4:10213617-10213636 None:intergenic 30.0%
CAAAACAACAAAACGATAGA+GGG - chr7_4:10213741-10213760 None:intergenic 30.0%
! GGGTAATGTCTAAACATTTT+AGG + chr7_4:10214124-10214143 Msa1139630:CDS 30.0%
TCCAAATGATTTGATATGAG+GGG - chr7_4:10214171-10214190 None:intergenic 30.0%
GTCCAAATGATTTGATATGA+GGG - chr7_4:10214172-10214191 None:intergenic 30.0%
TAAGAGAAACTTATCATTCC+TGG + chr7_4:10214259-10214278 Msa1139630:CDS 30.0%
ATTATAAGGCAGTAGTTATG+TGG + chr7_4:10214408-10214427 Msa1139630:intron 30.0%
TTATAAGGCAGTAGTTATGT+GGG + chr7_4:10214409-10214428 Msa1139630:intron 30.0%
ACATGCTTAATTATGTTCAG+TGG + chr7_4:10214528-10214547 Msa1139630:intron 30.0%
GATAGTTCATGGATATTACA+GGG + chr7_4:10214550-10214569 Msa1139630:intron 30.0%
GATACATGGTGAATATAACA+AGG - chr7_4:10214736-10214755 None:intergenic 30.0%
GTTATTGCAGTTCAAATATG+TGG - chr7_4:10214775-10214794 None:intergenic 30.0%
TCAATTTCAGAAAAAAGGAG+AGG - chr7_4:10214860-10214879 None:intergenic 30.0%
AATCAAACAATAGAGCTAGT+CGG - chr7_4:10215275-10215294 None:intergenic 30.0%
ATAGTGAATATGAAAGGGAT+CGG + chr7_4:10215301-10215320 Msa1139630:three_prime_UTR 30.0%
CTTCAAGACGATAGAAAAAA+TGG + chr7_4:10215357-10215376 Msa1139630:three_prime_UTR 30.0%
CAGCGATTAAAAAACTTTGT+TGG + chr7_4:10215391-10215410 Msa1139630:three_prime_UTR 30.0%
CGATTAAAAAACTTTGTTGG+TGG + chr7_4:10215394-10215413 Msa1139630:three_prime_UTR 30.0%
TTTCTGCAAAAATGTAGGAA+TGG - chr7_4:10215428-10215447 None:intergenic 30.0%
AACTCTTTCTGCAAAAATGT+AGG - chr7_4:10215433-10215452 None:intergenic 30.0%
GAGTTATTACAGTCTCTAAA+TGG + chr7_4:10215448-10215467 Msa1139630:three_prime_UTR 30.0%
!!! ACATATCCTCTATTTTTGGT+TGG + chr7_4:10215511-10215530 Msa1139630:three_prime_UTR 30.0%
! AATTGGAGCATAACTTTTAG+AGG + chr7_4:10215841-10215860 Msa1139630:three_prime_UTR 30.0%
! TTGTTTGTGATTGATTCATG+TGG - chr7_4:10215926-10215945 None:intergenic 30.0%
ACAAACAAGACACTGAAATT+TGG + chr7_4:10215938-10215957 Msa1139630:three_prime_UTR 30.0%
CAAACAAGACACTGAAATTT+GGG + chr7_4:10215939-10215958 Msa1139630:three_prime_UTR 30.0%
!! TTTGGGTTGTTACTATTTGA+AGG + chr7_4:10215956-10215975 Msa1139630:three_prime_UTR 30.0%
TCTAGTCCTTTACTTTACTA+TGG + chr7_4:10216212-10216231 Msa1139630:three_prime_UTR 30.0%
TAATTATTCTTGCAACTAGC+TGG + chr7_4:10216238-10216257 Msa1139630:three_prime_UTR 30.0%
GAAAACAGAAAAAAGGATGT+TGG - chr7_4:10216379-10216398 None:intergenic 30.0%
ATTGAAGTCGCAAAAAAAGA+AGG + chr7_4:10216500-10216519 Msa1139630:three_prime_UTR 30.0%
GTCATTCAGTAATTAAAACC+CGG + chr7_4:10216526-10216545 Msa1139630:three_prime_UTR 30.0%
! AGTAATTAAAACCCGGTTTT+AGG + chr7_4:10216533-10216552 Msa1139630:three_prime_UTR 30.0%
! GTAATTAAAACCCGGTTTTA+GGG + chr7_4:10216534-10216553 Msa1139630:three_prime_UTR 30.0%
! TCTCAATGAAGATCTTCTTT+TGG + chr7_4:10216573-10216592 Msa1139630:three_prime_UTR 30.0%
!!! ATCTTCTTTTGGAACATTTG+TGG + chr7_4:10216584-10216603 Msa1139630:three_prime_UTR 30.0%
AGAATACGCCATTATAAATG+AGG - chr7_4:10216618-10216637 None:intergenic 30.0%
!! GGGGGATATATATATTTTTG+AGG + chr7_4:10216648-10216667 Msa1139630:three_prime_UTR 30.0%
TGCGTTTAAGAATTCTGAAT+TGG + chr7_4:10216753-10216772 Msa1139630:three_prime_UTR 30.0%
!!! CTTTCTTCTCATATTTTTGG+TGG + chr7_4:10216832-10216851 Msa1139630:three_prime_UTR 30.0%
!!! TTGTGTTTTTTAGAGGGTTT+TGG + chr7_4:10216958-10216977 Msa1139630:three_prime_UTR 30.0%
!!! TTTTTTAGAGGGTTTTGGTT+TGG + chr7_4:10216963-10216982 Msa1139630:three_prime_UTR 30.0%
GTAGTATTTATATGAGTGAG+TGG + chr7_4:10217023-10217042 Msa1139630:three_prime_UTR 30.0%
! TTTTCTACAGCTTCAAGTAC+AGG - chr7_4:10212716-10212735 None:intergenic 35.0%
! CCATTTTATAGGACAACTTG+TGG - chr7_4:10213129-10213148 None:intergenic 35.0%
CCACAAGTTGTCCTATAAAA+TGG + chr7_4:10213126-10213145 Msa1139630:intron 35.0%
ATAGGGAATGAGTGATTAAC+TGG + chr7_4:10213264-10213283 Msa1139630:intron 35.0%
ACTGTGGTAAAAGTTGCTAT+TGG + chr7_4:10213358-10213377 Msa1139630:intron 35.0%
! CTGTGGTAAAAGTTGCTATT+GGG + chr7_4:10213359-10213378 Msa1139630:intron 35.0%
!! TCTCTTCAATTACTGGTTTG+TGG - chr7_4:10213405-10213424 None:intergenic 35.0%
GGTCAGTTAATACTGTTAGT+TGG + chr7_4:10213452-10213471 Msa1139630:intron 35.0%
ATACTGTTAGTTGGTTAGAC+GGG + chr7_4:10213461-10213480 Msa1139630:intron 35.0%
CCAAAACAACAAAACGATAG+AGG - chr7_4:10213742-10213761 None:intergenic 35.0%
!!! CCTCTATCGTTTTGTTGTTT+TGG + chr7_4:10213739-10213758 Msa1139630:intron 35.0%
TCCCCTCATATCAAATCATT+TGG + chr7_4:10214167-10214186 Msa1139630:CDS 35.0%
GGTCCAAATGATTTGATATG+AGG - chr7_4:10214173-10214192 None:intergenic 35.0%
GGAATGAATATCTTCGATCT+TGG + chr7_4:10214216-10214235 Msa1139630:CDS 35.0%
TTATCATTCCTGGCTTAAAG+AGG + chr7_4:10214269-10214288 Msa1139630:CDS 35.0%
! AACTTTTACCTCTTTAAGCC+AGG - chr7_4:10214280-10214299 None:intergenic 35.0%
TATGTTCAGTGGATAGTTCA+TGG + chr7_4:10214539-10214558 Msa1139630:intron 35.0%
GGATAGTTCATGGATATTAC+AGG + chr7_4:10214549-10214568 Msa1139630:intron 35.0%
ACTACTCATTAACCATCCAT+TGG + chr7_4:10214577-10214596 Msa1139630:intron 35.0%
TCATGGTTAATTGTGTCCAA+TGG - chr7_4:10214596-10214615 None:intergenic 35.0%
GTCAATGACGTTGAAAATCA+TGG - chr7_4:10214613-10214632 None:intergenic 35.0%
AAATATACACCTGAAAGTCG+TGG - chr7_4:10214635-10214654 None:intergenic 35.0%
TCATGAACTACGACTTTCAA+GGG - chr7_4:10214661-10214680 None:intergenic 35.0%
GTTCATGAGGTTCAAAATCT+TGG + chr7_4:10214673-10214692 Msa1139630:intron 35.0%
! TCTTGGTTAGTTACATTCAG+CGG + chr7_4:10214690-10214709 Msa1139630:intron 35.0%
TTAAATGCAATCAACGCATG+AGG - chr7_4:10215025-10215044 None:intergenic 35.0%
!! CATGCGTTGATTGCATTTAA+AGG + chr7_4:10215025-10215044 Msa1139630:CDS 35.0%
GAATATTGAGAACGTGAACA+AGG + chr7_4:10215108-10215127 Msa1139630:CDS 35.0%
! TTGAACATCTTCAGCCATTT+TGG + chr7_4:10215182-10215201 Msa1139630:CDS 35.0%
TTGACATACTTGGTCCAAAA+TGG - chr7_4:10215199-10215218 None:intergenic 35.0%
GATAGAAAAAATGGCTGAGA+GGG + chr7_4:10215366-10215385 Msa1139630:three_prime_UTR 35.0%
! GTTTTTCATGTCACAACTCA+AGG - chr7_4:10215493-10215512 None:intergenic 35.0%
CTTTCACCAACCAAAAATAG+AGG - chr7_4:10215520-10215539 None:intergenic 35.0%
!!! CTCTATTTTTGGTTGGTGAA+AGG + chr7_4:10215518-10215537 Msa1139630:three_prime_UTR 35.0%
ACCTGTTTCATCAATCTTGT+TGG + chr7_4:10215632-10215651 Msa1139630:three_prime_UTR 35.0%
ACCAACAAGATTGATGAAAC+AGG - chr7_4:10215636-10215655 None:intergenic 35.0%
GTGTTGAGAACATTACTACT+AGG + chr7_4:10215654-10215673 Msa1139630:three_prime_UTR 35.0%
!! ACTAGGACAGTTAATTTGTG+AGG + chr7_4:10215671-10215690 Msa1139630:three_prime_UTR 35.0%
TAACTCCAAACCACGTTAAT+TGG + chr7_4:10215793-10215812 Msa1139630:three_prime_UTR 35.0%
! ATCATGTGTATGATAACGCA+AGG - chr7_4:10215899-10215918 None:intergenic 35.0%
TTAAGCAACTTGTCTCCATT+TGG - chr7_4:10216038-10216057 None:intergenic 35.0%
ATGGAGACAAGTTGCTTAAA+TGG + chr7_4:10216039-10216058 Msa1139630:three_prime_UTR 35.0%
CAAGTTGCTTAAATGGAACA+AGG + chr7_4:10216046-10216065 Msa1139630:three_prime_UTR 35.0%
! TCTTAGTTTGAGTTACAACC+AGG + chr7_4:10216074-10216093 Msa1139630:three_prime_UTR 35.0%
GCAATCTTGTTAATATCTCC+TGG - chr7_4:10216095-10216114 None:intergenic 35.0%
CTAGCTCATTCTCTTTCTTA+AGG - chr7_4:10216147-10216166 None:intergenic 35.0%
TCGTTGTTCGAATGTTAACA+AGG + chr7_4:10216407-10216426 Msa1139630:three_prime_UTR 35.0%
TGGCGTATTCTCTTCTAATT+TGG + chr7_4:10216627-10216646 Msa1139630:three_prime_UTR 35.0%
GGCGTATTCTCTTCTAATTT+GGG + chr7_4:10216628-10216647 Msa1139630:three_prime_UTR 35.0%
GCGTATTCTCTTCTAATTTG+GGG + chr7_4:10216629-10216648 Msa1139630:three_prime_UTR 35.0%
CGTATTCTCTTCTAATTTGG+GGG + chr7_4:10216630-10216649 Msa1139630:three_prime_UTR 35.0%
!!! ATTTTTGAGGCTGAATTGCT+TGG + chr7_4:10216661-10216680 Msa1139630:three_prime_UTR 35.0%
TGCTTGGATTCATTATTGCT+AGG + chr7_4:10216677-10216696 Msa1139630:three_prime_UTR 35.0%
GCTTGGATTCATTATTGCTA+GGG + chr7_4:10216678-10216697 Msa1139630:three_prime_UTR 35.0%
ATTTGATGCGTGTAATCACT+AGG + chr7_4:10216702-10216721 Msa1139630:three_prime_UTR 35.0%
TTTGATGCGTGTAATCACTA+GGG + chr7_4:10216703-10216722 Msa1139630:three_prime_UTR 35.0%
AAAATATGTACAAGAGAGGG+GGG - chr7_4:10216990-10217009 None:intergenic 35.0%
GAAAATATGTACAAGAGAGG+GGG - chr7_4:10216991-10217010 None:intergenic 35.0%
GGAAAATATGTACAAGAGAG+GGG - chr7_4:10216992-10217011 None:intergenic 35.0%
GGGAAAATATGTACAAGAGA+GGG - chr7_4:10216993-10217012 None:intergenic 35.0%
AGGGAAAATATGTACAAGAG+AGG - chr7_4:10216994-10217013 None:intergenic 35.0%
GATTTCAACTACAATAGGGG+AGG - chr7_4:10212651-10212670 None:intergenic 40.0%
GGGATCAGGAATTACTATGA+TGG + chr7_4:10212743-10212762 Msa1139630:CDS 40.0%
TGGACTCGATTCACTAAGAT+TGG - chr7_4:10212786-10212805 None:intergenic 40.0%
AGATATGTACTTTGGGCTTC+TGG - chr7_4:10212834-10212853 None:intergenic 40.0%
GTGGAAAATTCAGAGACACT+TGG - chr7_4:10213386-10213405 None:intergenic 40.0%
AACCATGTGTAACCGATAGT+AGG + chr7_4:10213431-10213450 Msa1139630:intron 40.0%
! GGAGAGGATGCTTCTTTTAA+AGG - chr7_4:10213596-10213615 None:intergenic 40.0%
!!! AGAAGCATCCTCTCCTTTTT+TGG + chr7_4:10213601-10213620 Msa1139630:intron 40.0%
AAACTTGGCCAAAAAAGGAG+AGG - chr7_4:10213612-10213631 None:intergenic 40.0%
AACAAAACGATAGAGGGTCA+GGG - chr7_4:10213735-10213754 None:intergenic 40.0%
! ACTTTTCCCAAACCTTGACA+AGG + chr7_4:10213987-10214006 Msa1139630:intron 40.0%
AGACTACCTTGTCAAGGTTT+GGG - chr7_4:10213996-10214015 None:intergenic 40.0%
AAGACTACCTTGTCAAGGTT+TGG - chr7_4:10213997-10214016 None:intergenic 40.0%
CCAAAAAGACTACCTTGTCA+AGG - chr7_4:10214002-10214021 None:intergenic 40.0%
! CCTTGACAAGGTAGTCTTTT+TGG + chr7_4:10213999-10214018 Msa1139630:intron 40.0%
! AGTCTTTTTGGACGATGATG+TGG + chr7_4:10214011-10214030 Msa1139630:CDS 40.0%
! CTTTGGGAAATTGACCTTGA+AGG + chr7_4:10214057-10214076 Msa1139630:CDS 40.0%
GGAAATTGACCTTGAAGGAA+AGG + chr7_4:10214062-10214081 Msa1139630:CDS 40.0%
GACCTTGAAGGAAAGGTAAA+TGG + chr7_4:10214069-10214088 Msa1139630:CDS 40.0%
TTGCAGAGGAGAAGATGATT+GGG + chr7_4:10214104-10214123 Msa1139630:CDS 40.0%
! ATATCTTCGATCTTGGTGCA+TGG + chr7_4:10214223-10214242 Msa1139630:CDS 40.0%
CAAAAGCAAAAGGCAGCAAA+AGG - chr7_4:10214446-10214465 None:intergenic 40.0%
GGTTAATTGTGTCCAATGGA+TGG - chr7_4:10214592-10214611 None:intergenic 40.0%
CTCATGAACTACGACTTTCA+AGG - chr7_4:10214662-10214681 None:intergenic 40.0%
CTTGAAAGTCGTAGTTCATG+AGG + chr7_4:10214660-10214679 Msa1139630:intron 40.0%
CTGAAATTGAGATAGGGTGA+TGG + chr7_4:10214870-10214889 Msa1139630:intron 40.0%
! AAATTGAGATAGGGTGATGG+AGG + chr7_4:10214873-10214892 Msa1139630:intron 40.0%
TGATGGAGGTTAGAAAGTCT+TGG + chr7_4:10214887-10214906 Msa1139630:intron 40.0%
TGAGGTCAAACCTAACAATG+TGG + chr7_4:10214984-10215003 Msa1139630:CDS 40.0%
AACCTAACAATGTGGAAGCT+AGG + chr7_4:10214992-10215011 Msa1139630:CDS 40.0%
TTCCTAGCTTCCACATTGTT+AGG - chr7_4:10214997-10215016 None:intergenic 40.0%
TGAAGATGTTCAAAGCCAGT+TGG - chr7_4:10215175-10215194 None:intergenic 40.0%
CGATAGAAAAAATGGCTGAG+AGG + chr7_4:10215365-10215384 Msa1139630:three_prime_UTR 40.0%
CTGAATGGTAAAAAGTCACC+AGG + chr7_4:10215609-10215628 Msa1139630:three_prime_UTR 40.0%
AAGATTGATGAAACAGGTCC+TGG - chr7_4:10215630-10215649 None:intergenic 40.0%
CGTAACCAATTAACGTGGTT+TGG - chr7_4:10215801-10215820 None:intergenic 40.0%
! ATGTGTATGATAACGCAAGG+TGG - chr7_4:10215896-10215915 None:intergenic 40.0%
GAATGAGCTAGATGTAGCTT+CGG + chr7_4:10216156-10216175 Msa1139630:three_prime_UTR 40.0%
ACTAGCTGGTTAAATTAGCC+AGG + chr7_4:10216252-10216271 Msa1139630:three_prime_UTR 40.0%
GAAGATCTTCATTGAGAACC+CGG - chr7_4:10216570-10216589 None:intergenic 40.0%
TTGATGCGTGTAATCACTAG+GGG + chr7_4:10216704-10216723 Msa1139630:three_prime_UTR 40.0%
CATCTATTTCGCCAGATACA+AGG - chr7_4:10216781-10216800 None:intergenic 40.0%
! AAGGCATTCACCAGTTTGAC+TGG + chr7_4:10212672-10212691 Msa1139630:CDS 45.0%
CTCTAGTCAACCAGTCAAAC+TGG - chr7_4:10212685-10212704 None:intergenic 45.0%
TATACCTACCAGAGGTAGGT+TGG + chr7_4:10212873-10212892 Msa1139630:intron 45.0%
AGTTGAATCCAACCTACCTC+TGG - chr7_4:10212884-10212903 None:intergenic 45.0%
! GACCTACTATCGGTTACACA+TGG - chr7_4:10213436-10213455 None:intergenic 45.0%
TAGACGGGTGAAAGAGATAG+TGG + chr7_4:10213476-10213495 Msa1139630:intron 45.0%
ACAAAACGATAGAGGGTCAG+GGG - chr7_4:10213734-10213753 None:intergenic 45.0%
CAACAAAACGATAGAGGGTC+AGG - chr7_4:10213736-10213755 None:intergenic 45.0%
CGCCATTTACCTTTCCTTCA+AGG - chr7_4:10214074-10214093 None:intergenic 45.0%
TTCTCCTCTGCAAGTTTCCA+CGG - chr7_4:10214097-10214116 None:intergenic 45.0%
CTTGCAGAGGAGAAGATGAT+TGG + chr7_4:10214103-10214122 Msa1139630:CDS 45.0%
CAGTAGTTATGTGGGAACAC+AGG + chr7_4:10214417-10214436 Msa1139630:intron 45.0%
GGAGGTTAGAAAGTCTTGGT+TGG + chr7_4:10214891-10214910 Msa1139630:intron 45.0%
CTTCTCGATAGCAGAATCTG+AGG + chr7_4:10214966-10214985 Msa1139630:intron 45.0%
TGCAATCAACGCATGAGGTA+GGG - chr7_4:10215020-10215039 None:intergenic 45.0%
ATGCAATCAACGCATGAGGT+AGG - chr7_4:10215021-10215040 None:intergenic 45.0%
TTCATCCAATCGATCCCTCT+TGG + chr7_4:10215053-10215072 Msa1139630:CDS 45.0%
!! TTGGTAACCAGGGTTTTGAC+TGG - chr7_4:10215156-10215175 None:intergenic 45.0%
TCAAAACCCTGGTTACCAAC+TGG + chr7_4:10215157-10215176 Msa1139630:CDS 45.0%
!! TCAAAGCCAGTTGGTAACCA+GGG - chr7_4:10215166-10215185 None:intergenic 45.0%
!! TTCAAAGCCAGTTGGTAACC+AGG - chr7_4:10215167-10215186 None:intergenic 45.0%
!! TGCAATAGGGCATTGCCAAA+TGG + chr7_4:10216020-10216039 Msa1139630:three_prime_UTR 45.0%
! ACTAGGGGTTGCTTTGATTG+AGG + chr7_4:10216719-10216738 Msa1139630:three_prime_UTR 45.0%
! CTAGGGGTTGCTTTGATTGA+GGG + chr7_4:10216720-10216739 Msa1139630:three_prime_UTR 45.0%
! CTGAATTGGTGCCTTGTATC+TGG + chr7_4:10216767-10216786 Msa1139630:three_prime_UTR 45.0%
!!! TATCAAAAATTTTAAATTAT+TGG + chr7_4:10214368-10214387 Msa1139630:intron 5.0%
CTGGTAGGTATATGCGCAGA+TGG - chr7_4:10212865-10212884 None:intergenic 50.0%
TCTGCGCATATACCTACCAG+AGG + chr7_4:10212865-10212884 Msa1139630:CDS 50.0%
CGCATATACCTACCAGAGGT+AGG + chr7_4:10212869-10212888 Msa1139630:intron 50.0%
GAATCCAACCTACCTCTGGT+AGG - chr7_4:10212880-10212899 None:intergenic 50.0%
! GGGTGAAAGAGATAGTGGCA+GGG + chr7_4:10213481-10213500 Msa1139630:intron 50.0%
! GGTGAAAGAGATAGTGGCAG+GGG + chr7_4:10213482-10213501 Msa1139630:intron 50.0%
AAAACGATAGAGGGTCAGGG+GGG - chr7_4:10213732-10213751 None:intergenic 50.0%
CAAAACGATAGAGGGTCAGG+GGG - chr7_4:10213733-10213752 None:intergenic 50.0%
AACGCGACTTGTCTGCACTT+TGG + chr7_4:10214040-10214059 Msa1139630:CDS 50.0%
ACGCGACTTGTCTGCACTTT+GGG + chr7_4:10214041-10214060 Msa1139630:CDS 50.0%
ACGTCCATGCACACTCATCA+GGG - chr7_4:10214194-10214213 None:intergenic 50.0%
TACGTCCATGCACACTCATC+AGG - chr7_4:10214195-10214214 None:intergenic 50.0%
GATGAGTGTGCATGGACGTA+TGG + chr7_4:10214195-10214214 Msa1139630:CDS 50.0%
CGTCATTGACCACGACTTTC+AGG + chr7_4:10214623-10214642 Msa1139630:intron 50.0%
ATGTGCCAAGAGGGATCGAT+TGG - chr7_4:10215061-10215080 None:intergenic 50.0%
AATCGATCCCTCTTGGCACA+TGG + chr7_4:10215060-10215079 Msa1139630:CDS 50.0%
AAGCCAACCATGTGCCAAGA+GGG - chr7_4:10215070-10215089 None:intergenic 50.0%
TAAGCCAACCATGTGCCAAG+AGG - chr7_4:10215071-10215090 None:intergenic 50.0%
!! TCTTGGCACATGGTTGGCTT+AGG + chr7_4:10215070-10215089 Msa1139630:CDS 50.0%
GCCGCTGTTACTCACTACAA+CGG + chr7_4:10215130-10215149 Msa1139630:CDS 50.0%
GCCGTTGTAGTGAGTAACAG+CGG - chr7_4:10215134-10215153 None:intergenic 50.0%
ACAATAGAGCTAGTCGGCAG+CGG - chr7_4:10215269-10215288 None:intergenic 50.0%
CGGGTCGTAACCAATTAACG+TGG - chr7_4:10215806-10215825 None:intergenic 50.0%
CGAAGTTGCAGATGTAGTCC+TGG - chr7_4:10216273-10216292 None:intergenic 50.0%
CAGCCAGAACTTTGCAGGAA+GGG + chr7_4:10216333-10216352 Msa1139630:three_prime_UTR 50.0%
AGCCAGAACTTTGCAGGAAG+GGG + chr7_4:10216334-10216353 Msa1139630:three_prime_UTR 50.0%
ATCCCCTTCCTGCAAAGTTC+TGG - chr7_4:10216339-10216358 None:intergenic 50.0%
! GAGTGATTCTGTGTTGCTGC+TGG - chr7_4:10216466-10216485 None:intergenic 50.0%
AGTTGGAGGACCCTAAAACC+GGG - chr7_4:10216547-10216566 None:intergenic 50.0%
GAGTTGGAGGACCCTAAAAC+CGG - chr7_4:10216548-10216567 None:intergenic 50.0%
!!! GTTTTAGGGTCCTCCAACTC+CGG + chr7_4:10216548-10216567 Msa1139630:three_prime_UTR 50.0%
!!! TTTTAGGGTCCTCCAACTCC+GGG + chr7_4:10216549-10216568 Msa1139630:three_prime_UTR 50.0%
CTTCATTGAGAACCCGGAGT+TGG - chr7_4:10216564-10216583 None:intergenic 50.0%
TATGAGTGAGTGGCAGCAGA+AGG + chr7_4:10217033-10217052 Msa1139630:three_prime_UTR 50.0%
ATGAGTGAGTGGCAGCAGAA+GGG + chr7_4:10217034-10217053 Msa1139630:three_prime_UTR 50.0%
! CGGGTGAAAGAGATAGTGGC+AGG + chr7_4:10213480-10213499 Msa1139630:intron 55.0%
AGGAAAGGTAAATGGCGCCG+TGG + chr7_4:10214077-10214096 Msa1139630:CDS 55.0%
TGGACCCTGATGAGTGTGCA+TGG + chr7_4:10214187-10214206 Msa1139630:CDS 55.0%
GATCCCTCTTGGCACATGGT+TGG + chr7_4:10215064-10215083 Msa1139630:CDS 55.0%
ACAACGGCCAGTCAAAACCC+TGG + chr7_4:10215146-10215165 Msa1139630:CDS 55.0%
!! CGGCAGCGGACTATGATTCT+TGG - chr7_4:10215255-10215274 None:intergenic 55.0%
! CCTTCCTGCAAAGTTCTGGC+TGG - chr7_4:10216335-10216354 None:intergenic 55.0%
CCAGCCAGAACTTTGCAGGA+AGG + chr7_4:10216332-10216351 Msa1139630:three_prime_UTR 55.0%
CATTGAGAACCCGGAGTTGG+AGG - chr7_4:10216561-10216580 None:intergenic 55.0%
TGAGTGAGTGGCAGCAGAAG+GGG + chr7_4:10217035-10217054 Msa1139630:three_prime_UTR 55.0%
! CCTGCAAAGTTCTGGCTGGC+TGG - chr7_4:10216331-10216350 None:intergenic 60.0%
CCAGCCAGCCAGAACTTTGC+AGG + chr7_4:10216328-10216347 Msa1139630:three_prime_UTR 60.0%
GAGTGAGTGGCAGCAGAAGG+GGG + chr7_4:10217036-10217055 Msa1139630:three_prime_UTR 60.0%
GGCGCCGTGGAAACTTGCAG+AGG + chr7_4:10214090-10214109 Msa1139630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 10212620 10217065 10212620 ID=Msa1139630;Name=Msa1139630
chr7_4 mRNA 10212620 10217065 10212620 ID=Msa1139630-mRNA-1;Parent=Msa1139630;Name=Msa1139630-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.5|0.33|1|1|1|3|1801|277
chr7_4 exon 10212620 10212886 10212620 ID=Msa1139630-mRNA-1:exon:2521;Parent=Msa1139630-mRNA-1
chr7_4 exon 10214009 10214290 10214009 ID=Msa1139630-mRNA-1:exon:2522;Parent=Msa1139630-mRNA-1
chr7_4 exon 10214980 10217065 10214980 ID=Msa1139630-mRNA-1:exon:2523;Parent=Msa1139630-mRNA-1
chr7_4 CDS 10212620 10212886 10212620 ID=Msa1139630-mRNA-1:cds;Parent=Msa1139630-mRNA-1
chr7_4 CDS 10214009 10214290 10214009 ID=Msa1139630-mRNA-1:cds;Parent=Msa1139630-mRNA-1
chr7_4 CDS 10214980 10215264 10214980 ID=Msa1139630-mRNA-1:cds;Parent=Msa1139630-mRNA-1
chr7_4 three_prime_UTR 10215265 10217065 10215265 ID=Msa1139630-mRNA-1:three_prime_utr;Parent=Msa1139630-mRNA-1
Gene Sequence

>Msa1139630

ATGCACTCGTGGTTTGCGCTAAATTTTGCCTCCCCTATTGTAGTTGAAATCAAAGGCATTCACCAGTTTGACTGGTTGACTAGAGAAAATGTTCCTGTACTTGAAGCTGTAGAAAATCAAAATGGGATCAGGAATTACTATGATGGAAATCATTTAGCTGGAGCCAATCTTAGTGAATCGAGTCCACGTAAATTTGCATCTAAATTGCAATCCAGAAGCCCAAAGTACATATCTTTACTCAACCATCTGCGCATATACCTACCAGAGGTAGTCTTTTTGGACGATGATGTGGTGATTCAACGCGACTTGTCTGCACTTTGGGAAATTGACCTTGAAGGAAAGGTAAATGGCGCCGTGGAAACTTGCAGAGGAGAAGATGATTGGGTAATGTCTAAACATTTTAGGAACTACTTCAATTTTTCTCATCCCCTCATATCAAATCATTTGGACCCTGATGAGTGTGCATGGACGTATGGAATGAATATCTTCGATCTTGGTGCATGGAGAAGAACTAATATAAGAGAAACTTATCATTCCTGGCTTAAAGAGAATCTGAGGTCAAACCTAACAATGTGGAAGCTAGGAACCCTACCTCATGCGTTGATTGCATTTAAAGGTCACGTTCATCCAATCGATCCCTCTTGGCACATGGTTGGCTTAGGCTATCAGAGCAATACGAATATTGAGAACGTGAACAAGGCCGCTGTTACTCACTACAACGGCCAGTCAAAACCCTGGTTACCAACTGGCTTTGAACATCTTCAGCCATTTTGGACCAAGTATGTCAATTATTCAAATGATTTTGTGAAGAACTGTCATATCCAAGAATCATAG
Protein sequence

>Msa1139630

MHSWFALNFASPIVVEIKGIHQFDWLTRENVPVLEAVENQNGIRNYYDGNHLAGANLSESSPRKFASKLQSRSPKYISLLNHLRIYLPEVVFLDDDVVIQRDLSALWEIDLEGKVNGAVETCRGEDDWVMSKHFRNYFNFSHPLISNHLDPDECAWTYGMNIFDLGAWRRTNIRETYHSWLKENLRSNLTMWKLGTLPHALIAFKGHVHPIDPSWHMVGLGYQSNTNIENVNKAAVTHYNGQSKPWLPTGFEHLQPFWTKYVNYSNDFVKNCHIQES*