Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139830 | CAI29046.1 | 94.882 | 254 | 8 | 1 | 1 | 254 | 1 | 249 | 9.86e-175 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139830 | sp|Q75KD7|AOC_ORYSJ | 70.256 | 195 | 56 | 2 | 62 | 255 | 47 | 240 | 1.41e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139830 | Q599T8 | 94.882 | 254 | 8 | 1 | 1 | 254 | 1 | 249 | 4.71e-175 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1051530 | Msa1139830 | 0.821792 | 3.345007e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139830 | MtrunA17_Chr7g0220911 | 94.118 | 255 | 10 | 1 | 1 | 255 | 1 | 250 | 1.73e-178 | 490 |
| Msa1139830 | MtrunA17_Chr4g0034431 | 77.220 | 259 | 53 | 4 | 1 | 255 | 1 | 257 | 6.59e-143 | 400 |
| Msa1139830 | MtrunA17_Chr5g0422541 | 66.518 | 224 | 72 | 2 | 32 | 255 | 32 | 252 | 4.31e-105 | 305 |
| Msa1139830 | MtrunA17_Chr6g0456981 | 64.407 | 236 | 76 | 4 | 1 | 235 | 1 | 229 | 5.30e-100 | 291 |
| Msa1139830 | MtrunA17_Chr6g0456971 | 57.664 | 274 | 92 | 2 | 1 | 255 | 1 | 269 | 4.23e-99 | 290 |
| Msa1139830 | MtrunA17_Chr8g0364271 | 85.246 | 122 | 8 | 1 | 1 | 122 | 1 | 112 | 4.89e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1139830 | AT1G13280.1 | 64.362 | 188 | 64 | 3 | 70 | 255 | 68 | 254 | 1.25e-84 | 253 |
| Msa1139830 | AT3G25780.1 | 59.716 | 211 | 70 | 4 | 47 | 255 | 61 | 258 | 7.65e-84 | 251 |
| Msa1139830 | AT3G25770.1 | 62.983 | 181 | 65 | 2 | 76 | 255 | 74 | 253 | 2.01e-81 | 245 |
| Msa1139830 | AT3G25760.1 | 59.067 | 193 | 77 | 2 | 64 | 255 | 63 | 254 | 8.57e-81 | 243 |
Find 55 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATTTCAGTTTGAATT+TGG | 0.144744 | 7_4:-10552513 | Msa1139830:three_prime_UTR |
| GCAATCTACAGTTTCCATTT+TGG | 0.160250 | 7_4:-10553009 | Msa1139830:CDS |
| CAAACTGAAATATTAATTTA+TGG | 0.177396 | 7_4:+10552520 | None:intergenic |
| GAGCCTCATGCTGTCATTGC+TGG | 0.269913 | 7_4:-10552736 | Msa1139830:CDS |
| GGAATATTTGAAGGTGTTAA+AGG | 0.277922 | 7_4:-10552907 | Msa1139830:CDS |
| AGAATGCAGCGTTCATCTTT+AGG | 0.278655 | 7_4:+10553859 | None:intergenic |
| CTAGCTGTGACTGGTGGTTC+TGG | 0.279570 | 7_4:-10552928 | Msa1139830:CDS |
| AGTGACCATAATCTCCAAAA+TGG | 0.326462 | 7_4:+10552995 | None:intergenic |
| GTGGTTGTCATCATTGAAAT+TGG | 0.330567 | 7_4:-10552544 | Msa1139830:three_prime_UTR |
| TGCTTAATTATATTGTTTGT+TGG | 0.332392 | 7_4:+10554046 | None:intergenic |
| ATTACGGAAATATTAACTTA+TGG | 0.338624 | 7_4:+10552489 | None:intergenic |
| TCCTCAGGATAGGTCAAATA+TGG | 0.373814 | 7_4:+10552958 | None:intergenic |
| AATGTGTAGAAAATCTTAAA+AGG | 0.374409 | 7_4:+10552856 | None:intergenic |
| TTGCAAGTAAAAGATTTCAT+AGG | 0.385497 | 7_4:+10553813 | None:intergenic |
| AAACGTATTGGAATAACAAC+TGG | 0.388638 | 7_4:-10553084 | Msa1139830:CDS |
| GATTTGCCTCAAGAGCTTCT+TGG | 0.394018 | 7_4:-10552814 | Msa1139830:CDS |
| TAATTAGTTGATTTATTAAG+TGG | 0.407279 | 7_4:-10552707 | Msa1139830:exon |
| TGTCAGCATGCTCATTTGCT+TGG | 0.409144 | 7_4:+10553787 | None:intergenic |
| ACAGCAGGAGAAGGCTCAAC+AGG | 0.409306 | 7_4:+10552787 | None:intergenic |
| TTGCTTAATCTCAAGTAAGC+TGG | 0.430132 | 7_4:+10553607 | None:intergenic |
| GTTGGTTTAACAAAGGAAGA+TGG | 0.461263 | 7_4:+10553969 | None:intergenic |
| AAGGATGTGAAAGCAGATGA+GGG | 0.471406 | 7_4:+10553912 | None:intergenic |
| AATAAAAGTGTCAATTCTCT+TGG | 0.471904 | 7_4:-10553586 | Msa1139830:CDS |
| AATAATTAGTGGTGTGATGA+TGG | 0.477178 | 7_4:-10552663 | Msa1139830:three_prime_UTR |
| TGCTTAATCTCAAGTAAGCT+GGG | 0.477724 | 7_4:+10553608 | None:intergenic |
| GCAGGAGAAGCTTCAACAGC+AGG | 0.485103 | 7_4:+10552772 | None:intergenic |
| TTTGATGGTGAAATAATTAG+TGG | 0.486984 | 7_4:-10552674 | Msa1139830:three_prime_UTR |
| GGCTCAAGAGCCTTAGCAGC+AGG | 0.487676 | 7_4:+10552754 | None:intergenic |
| TGAAGCTTCTCCTGCTGCTA+AGG | 0.489670 | 7_4:-10552764 | Msa1139830:CDS |
| TATGGTCACTTAGCAGTTCA+AGG | 0.495065 | 7_4:-10552982 | Msa1139830:CDS |
| GGTGGTTCTGGAATATTTGA+AGG | 0.514948 | 7_4:-10552916 | Msa1139830:CDS |
| GGGGTGGTGGCAAAAGCAGT+TGG | 0.517114 | 7_4:+10553951 | None:intergenic |
| CAACACATTGCAGAAAAGAA+AGG | 0.527550 | 7_4:-10553045 | Msa1139830:CDS |
| GAAGGATGTGAAAGCAGATG+AGG | 0.534044 | 7_4:+10553911 | None:intergenic |
| TAGATAAGTGTCCTCAGGAT+AGG | 0.557748 | 7_4:+10552948 | None:intergenic |
| ACAGCTAGATAAGTGTCCTC+AGG | 0.560526 | 7_4:+10552943 | None:intergenic |
| AGATGAGTTTGATGAAGTGA+AGG | 0.562385 | 7_4:+10553893 | None:intergenic |
| TGAATTATGCAGTTATACAC+AGG | 0.568803 | 7_4:-10553117 | Msa1139830:intron |
| GCAAATGAGCATGCTGACAC+TGG | 0.571331 | 7_4:-10553783 | Msa1139830:intron |
| GAAGCTTCAACAGCAGGAGA+AGG | 0.572761 | 7_4:+10552778 | None:intergenic |
| GACACTTATCTAGCTGTGAC+TGG | 0.577356 | 7_4:-10552937 | Msa1139830:CDS |
| TCAAGTAAGCTGGGCTACCA+CGG | 0.602620 | 7_4:+10553617 | None:intergenic |
| AAAAGCAGTTGGTTTAACAA+AGG | 0.604904 | 7_4:+10553962 | None:intergenic |
| TCTCAAAGCATAGCTTGAAG+AGG | 0.618632 | 7_4:+10553998 | None:intergenic |
| GGTTTACCAAGAAGCTCTTG+AGG | 0.629043 | 7_4:+10552808 | None:intergenic |
| AAACCAGCAATGACAGCATG+AGG | 0.634146 | 7_4:+10552733 | None:intergenic |
| ACTTATCTAGCTGTGACTGG+TGG | 0.640066 | 7_4:-10552934 | Msa1139830:CDS |
| GGATGTGAAAGCAGATGAGG+GGG | 0.651228 | 7_4:+10553914 | None:intergenic |
| GAGCTTAATGAGAGGGACCG+TGG | 0.672691 | 7_4:-10553634 | Msa1139830:CDS |
| TGTGTATGAGCTTAATGAGA+GGG | 0.682673 | 7_4:-10553641 | Msa1139830:CDS |
| ACCATATTTGACCTATCCTG+AGG | 0.683765 | 7_4:-10552959 | Msa1139830:CDS |
| AGGATGTGAAAGCAGATGAG+GGG | 0.691672 | 7_4:+10553913 | None:intergenic |
| AATAATGCAAAAGTACCATG+TGG | 0.701736 | 7_4:-10552563 | Msa1139830:three_prime_UTR |
| TTTCAATGATGACAACCACA+TGG | 0.711995 | 7_4:+10552548 | None:intergenic |
| ATGTGTATGAGCTTAATGAG+AGG | 0.762359 | 7_4:-10553642 | Msa1139830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTAATTATAAAAAATTAA+GGG | - | chr7_4:10553104-10553123 | Msa1139830:CDS | 10.0% |
| !!! | AATTGTATTTTTTTTTTCTT+TGG | - | chr7_4:10553193-10553212 | Msa1139830:intron | 10.0% |
| !! | ACCTAATTATAAAAAATTAA+GGG | - | chr7_4:10553104-10553123 | Msa1139830:CDS | 10.0% |
| !!! | AATTGTATTTTTTTTTTCTT+TGG | - | chr7_4:10553193-10553212 | Msa1139830:intron | 10.0% |
| !! | ATCACAAAAATAAAATATAG+AGG | + | chr7_4:10553011-10553030 | None:intergenic | 15.0% |
| !!! | ATTTTCGATAGTTTTTTTAT+CGG | - | chr7_4:10553035-10553054 | Msa1139830:CDS | 15.0% |
| !! | GACCTAATTATAAAAAATTA+AGG | - | chr7_4:10553103-10553122 | Msa1139830:CDS | 15.0% |
| !!! | ACCCTTAATTTTTTATAATT+AGG | + | chr7_4:10553108-10553127 | None:intergenic | 15.0% |
| !!! | ATCCATAAACAATTTTTTAA+TGG | + | chr7_4:10553140-10553159 | None:intergenic | 15.0% |
| !! | CATAAATCATAAACAAAATA+AGG | + | chr7_4:10553274-10553293 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAAGAGGTATTA+AGG | - | chr7_4:10553681-10553700 | Msa1139830:intron | 15.0% |
| !!! | TAATTAGTTGATTTATTAAG+TGG | - | chr7_4:10553810-10553829 | Msa1139830:CDS | 15.0% |
| !! | CAAACTGAAATATTAATTTA+TGG | + | chr7_4:10554000-10554019 | None:intergenic | 15.0% |
| !! | TTAATATTTCAGTTTGAATT+TGG | - | chr7_4:10554004-10554023 | Msa1139830:CDS | 15.0% |
| !! | ATCACAAAAATAAAATATAG+AGG | + | chr7_4:10553011-10553030 | None:intergenic | 15.0% |
| !!! | ATTTTCGATAGTTTTTTTAT+CGG | - | chr7_4:10553035-10553054 | Msa1139830:CDS | 15.0% |
| !! | GACCTAATTATAAAAAATTA+AGG | - | chr7_4:10553103-10553122 | Msa1139830:CDS | 15.0% |
| !!! | ACCCTTAATTTTTTATAATT+AGG | + | chr7_4:10553108-10553127 | None:intergenic | 15.0% |
| !!! | ATCCATAAACAATTTTTTAA+TGG | + | chr7_4:10553140-10553159 | None:intergenic | 15.0% |
| !! | CATAAATCATAAACAAAATA+AGG | + | chr7_4:10553274-10553293 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAAGAGGTATTA+AGG | - | chr7_4:10553681-10553700 | Msa1139830:intron | 15.0% |
| !!! | TAATTAGTTGATTTATTAAG+TGG | - | chr7_4:10553810-10553829 | Msa1139830:CDS | 15.0% |
| !! | CAAACTGAAATATTAATTTA+TGG | + | chr7_4:10554000-10554019 | None:intergenic | 15.0% |
| !! | TTAATATTTCAGTTTGAATT+TGG | - | chr7_4:10554004-10554023 | Msa1139830:CDS | 15.0% |
| !! | TGCTTAATTATATTGTTTGT+TGG | + | chr7_4:10552474-10552493 | None:intergenic | 20.0% |
| !! | TTCATTCTATCATCAAAAAA+TGG | - | chr7_4:10552496-10552515 | Msa1139830:three_prime_UTR | 20.0% |
| !!! | TTTTGAAAAACACGTATATT+TGG | + | chr7_4:10552777-10552796 | None:intergenic | 20.0% |
| !! | CTCCATTAAAAAATTGTTTA+TGG | - | chr7_4:10553135-10553154 | Msa1139830:intron | 20.0% |
| !! | AATGTGTAGAAAATCTTAAA+AGG | + | chr7_4:10553664-10553683 | None:intergenic | 20.0% |
| !!! | TTCTACACATTTTATTTAAG+AGG | - | chr7_4:10553673-10553692 | Msa1139830:intron | 20.0% |
| !! | ATTACGGAAATATTAACTTA+TGG | + | chr7_4:10554031-10554050 | None:intergenic | 20.0% |
| !! | AAAAAAGAAGAAAGCAATTA+CGG | + | chr7_4:10554047-10554066 | None:intergenic | 20.0% |
| !! | TGCTTAATTATATTGTTTGT+TGG | + | chr7_4:10552474-10552493 | None:intergenic | 20.0% |
| !! | TTCATTCTATCATCAAAAAA+TGG | - | chr7_4:10552496-10552515 | Msa1139830:three_prime_UTR | 20.0% |
| !!! | TTTTGAAAAACACGTATATT+TGG | + | chr7_4:10552777-10552796 | None:intergenic | 20.0% |
| !! | CTCCATTAAAAAATTGTTTA+TGG | - | chr7_4:10553135-10553154 | Msa1139830:intron | 20.0% |
| !! | AATGTGTAGAAAATCTTAAA+AGG | + | chr7_4:10553664-10553683 | None:intergenic | 20.0% |
| !!! | TTCTACACATTTTATTTAAG+AGG | - | chr7_4:10553673-10553692 | Msa1139830:intron | 20.0% |
| !! | ATTACGGAAATATTAACTTA+TGG | + | chr7_4:10554031-10554050 | None:intergenic | 20.0% |
| !! | AAAAAAGAAGAAAGCAATTA+CGG | + | chr7_4:10554047-10554066 | None:intergenic | 20.0% |
| ! | TTGCAAGTAAAAGATTTCAT+AGG | + | chr7_4:10552707-10552726 | None:intergenic | 25.0% |
| !!! | AATAAAAGTGTCAATTCTCT+TGG | - | chr7_4:10552931-10552950 | Msa1139830:CDS | 25.0% |
| !! | TTTTTACTTTGTTGCTGAAT+GGG | + | chr7_4:10552966-10552985 | None:intergenic | 25.0% |
| !!! | TTTTTTACTTTGTTGCTGAA+TGG | + | chr7_4:10552967-10552986 | None:intergenic | 25.0% |
| !!! | TTCCATGAACTATTTTAGTA+GGG | - | chr7_4:10553081-10553100 | Msa1139830:CDS | 25.0% |
| !!! | TTTGATGGTGAAATAATTAG+TGG | - | chr7_4:10553843-10553862 | Msa1139830:CDS | 25.0% |
| ! | TTGCAAGTAAAAGATTTCAT+AGG | + | chr7_4:10552707-10552726 | None:intergenic | 25.0% |
| !!! | AATAAAAGTGTCAATTCTCT+TGG | - | chr7_4:10552931-10552950 | Msa1139830:CDS | 25.0% |
| !! | TTTTTACTTTGTTGCTGAAT+GGG | + | chr7_4:10552966-10552985 | None:intergenic | 25.0% |
| !!! | TTTTTTACTTTGTTGCTGAA+TGG | + | chr7_4:10552967-10552986 | None:intergenic | 25.0% |
| !!! | TTCCATGAACTATTTTAGTA+GGG | - | chr7_4:10553081-10553100 | Msa1139830:CDS | 25.0% |
| !!! | TTTGATGGTGAAATAATTAG+TGG | - | chr7_4:10553843-10553862 | Msa1139830:CDS | 25.0% |
| ! | AAAAGCAGTTGGTTTAACAA+AGG | + | chr7_4:10552558-10552577 | None:intergenic | 30.0% |
| !! | CGTGTTTTTCAAAAGTTTCT+TGG | - | chr7_4:10552783-10552802 | Msa1139830:CDS | 30.0% |
| CTAAAATAGTTCATGGAAGT+TGG | + | chr7_4:10553079-10553098 | None:intergenic | 30.0% | |
| !!! | CTTCCATGAACTATTTTAGT+AGG | - | chr7_4:10553080-10553099 | Msa1139830:CDS | 30.0% |
| TGAATTATGCAGTTATACAC+AGG | - | chr7_4:10553400-10553419 | Msa1139830:intron | 30.0% | |
| AAACGTATTGGAATAACAAC+TGG | - | chr7_4:10553433-10553452 | Msa1139830:intron | 30.0% | |
| !! | AGTTTCCATTTTGGAGATTA+TGG | - | chr7_4:10553517-10553536 | Msa1139830:intron | 30.0% |
| !! | GGAATATTTGAAGGTGTTAA+AGG | - | chr7_4:10553610-10553629 | Msa1139830:CDS | 30.0% |
| !!! | AGTGGTTTGTTTTTGTTTGA+TGG | - | chr7_4:10553828-10553847 | Msa1139830:CDS | 30.0% |
| AATAATTAGTGGTGTGATGA+TGG | - | chr7_4:10553854-10553873 | Msa1139830:CDS | 30.0% | |
| !!! | TGTGATGATGGATTTTGTAA+TGG | - | chr7_4:10553866-10553885 | Msa1139830:CDS | 30.0% |
| !!! | GTGATGATGGATTTTGTAAT+GGG | - | chr7_4:10553867-10553886 | Msa1139830:CDS | 30.0% |
| !!! | TGATGATGGATTTTGTAATG+GGG | - | chr7_4:10553868-10553887 | Msa1139830:CDS | 30.0% |
| !!! | GTTTTTTGAGTTGTAATGCT+TGG | - | chr7_4:10553897-10553916 | Msa1139830:CDS | 30.0% |
| !! | AATAATGCAAAAGTACCATG+TGG | - | chr7_4:10553954-10553973 | Msa1139830:CDS | 30.0% |
| ! | AAAAGCAGTTGGTTTAACAA+AGG | + | chr7_4:10552558-10552577 | None:intergenic | 30.0% |
| !! | CGTGTTTTTCAAAAGTTTCT+TGG | - | chr7_4:10552783-10552802 | Msa1139830:CDS | 30.0% |
| CTAAAATAGTTCATGGAAGT+TGG | + | chr7_4:10553079-10553098 | None:intergenic | 30.0% | |
| !!! | CTTCCATGAACTATTTTAGT+AGG | - | chr7_4:10553080-10553099 | Msa1139830:CDS | 30.0% |
| TGAATTATGCAGTTATACAC+AGG | - | chr7_4:10553400-10553419 | Msa1139830:intron | 30.0% | |
| AAACGTATTGGAATAACAAC+TGG | - | chr7_4:10553433-10553452 | Msa1139830:intron | 30.0% | |
| !! | AGTTTCCATTTTGGAGATTA+TGG | - | chr7_4:10553517-10553536 | Msa1139830:intron | 30.0% |
| !! | GGAATATTTGAAGGTGTTAA+AGG | - | chr7_4:10553610-10553629 | Msa1139830:CDS | 30.0% |
| !!! | AGTGGTTTGTTTTTGTTTGA+TGG | - | chr7_4:10553828-10553847 | Msa1139830:CDS | 30.0% |
| AATAATTAGTGGTGTGATGA+TGG | - | chr7_4:10553854-10553873 | Msa1139830:CDS | 30.0% | |
| !!! | TGTGATGATGGATTTTGTAA+TGG | - | chr7_4:10553866-10553885 | Msa1139830:CDS | 30.0% |
| !!! | GTGATGATGGATTTTGTAAT+GGG | - | chr7_4:10553867-10553886 | Msa1139830:CDS | 30.0% |
| !!! | TGATGATGGATTTTGTAATG+GGG | - | chr7_4:10553868-10553887 | Msa1139830:CDS | 30.0% |
| !!! | GTTTTTTGAGTTGTAATGCT+TGG | - | chr7_4:10553897-10553916 | Msa1139830:CDS | 30.0% |
| !! | AATAATGCAAAAGTACCATG+TGG | - | chr7_4:10553954-10553973 | Msa1139830:CDS | 30.0% |
| ! | GTTGGTTTAACAAAGGAAGA+TGG | + | chr7_4:10552551-10552570 | None:intergenic | 35.0% |
| AGATGAGTTTGATGAAGTGA+AGG | + | chr7_4:10552627-10552646 | None:intergenic | 35.0% | |
| ATGTGTATGAGCTTAATGAG+AGG | - | chr7_4:10552875-10552894 | Msa1139830:CDS | 35.0% | |
| TGTGTATGAGCTTAATGAGA+GGG | - | chr7_4:10552876-10552895 | Msa1139830:CDS | 35.0% | |
| TGCTTAATCTCAAGTAAGCT+GGG | + | chr7_4:10552912-10552931 | None:intergenic | 35.0% | |
| TTGCTTAATCTCAAGTAAGC+TGG | + | chr7_4:10552913-10552932 | None:intergenic | 35.0% | |
| GTCCCTACTAAAATAGTTCA+TGG | + | chr7_4:10553086-10553105 | None:intergenic | 35.0% | |
| GACACAAAATGAGACTACTA+CGG | + | chr7_4:10553309-10553328 | None:intergenic | 35.0% | |
| GGTGATCTACAAAAACGTAT+TGG | - | chr7_4:10553421-10553440 | Msa1139830:intron | 35.0% | |
| ! | CTTTCTTTTCTGCAATGTGT+TGG | + | chr7_4:10553474-10553493 | None:intergenic | 35.0% |
| CAACACATTGCAGAAAAGAA+AGG | - | chr7_4:10553472-10553491 | Msa1139830:intron | 35.0% | |
| ! | GCAATCTACAGTTTCCATTT+TGG | - | chr7_4:10553508-10553527 | Msa1139830:intron | 35.0% |
| AGTGACCATAATCTCCAAAA+TGG | + | chr7_4:10553525-10553544 | None:intergenic | 35.0% | |
| TTTCAATGATGACAACCACA+TGG | + | chr7_4:10553972-10553991 | None:intergenic | 35.0% | |
| GTGGTTGTCATCATTGAAAT+TGG | - | chr7_4:10553973-10553992 | Msa1139830:CDS | 35.0% | |
| ! | GTTGGTTTAACAAAGGAAGA+TGG | + | chr7_4:10552551-10552570 | None:intergenic | 35.0% |
| AGATGAGTTTGATGAAGTGA+AGG | + | chr7_4:10552627-10552646 | None:intergenic | 35.0% | |
| ATGTGTATGAGCTTAATGAG+AGG | - | chr7_4:10552875-10552894 | Msa1139830:CDS | 35.0% | |
| TGTGTATGAGCTTAATGAGA+GGG | - | chr7_4:10552876-10552895 | Msa1139830:CDS | 35.0% | |
| TGCTTAATCTCAAGTAAGCT+GGG | + | chr7_4:10552912-10552931 | None:intergenic | 35.0% | |
| TTGCTTAATCTCAAGTAAGC+TGG | + | chr7_4:10552913-10552932 | None:intergenic | 35.0% | |
| GTCCCTACTAAAATAGTTCA+TGG | + | chr7_4:10553086-10553105 | None:intergenic | 35.0% | |
| GACACAAAATGAGACTACTA+CGG | + | chr7_4:10553309-10553328 | None:intergenic | 35.0% | |
| GGTGATCTACAAAAACGTAT+TGG | - | chr7_4:10553421-10553440 | Msa1139830:intron | 35.0% | |
| ! | CTTTCTTTTCTGCAATGTGT+TGG | + | chr7_4:10553474-10553493 | None:intergenic | 35.0% |
| CAACACATTGCAGAAAAGAA+AGG | - | chr7_4:10553472-10553491 | Msa1139830:intron | 35.0% | |
| ! | GCAATCTACAGTTTCCATTT+TGG | - | chr7_4:10553508-10553527 | Msa1139830:intron | 35.0% |
| AGTGACCATAATCTCCAAAA+TGG | + | chr7_4:10553525-10553544 | None:intergenic | 35.0% | |
| TTTCAATGATGACAACCACA+TGG | + | chr7_4:10553972-10553991 | None:intergenic | 35.0% | |
| GTGGTTGTCATCATTGAAAT+TGG | - | chr7_4:10553973-10553992 | Msa1139830:CDS | 35.0% | |
| TCTCAAAGCATAGCTTGAAG+AGG | + | chr7_4:10552522-10552541 | None:intergenic | 40.0% | |
| AAGGATGTGAAAGCAGATGA+GGG | + | chr7_4:10552608-10552627 | None:intergenic | 40.0% | |
| AGAATGCAGCGTTCATCTTT+AGG | + | chr7_4:10552661-10552680 | None:intergenic | 40.0% | |
| TATGGTCACTTAGCAGTTCA+AGG | - | chr7_4:10553535-10553554 | Msa1139830:intron | 40.0% | |
| ACCATATTTGACCTATCCTG+AGG | - | chr7_4:10553558-10553577 | Msa1139830:intron | 40.0% | |
| TCCTCAGGATAGGTCAAATA+TGG | + | chr7_4:10553562-10553581 | None:intergenic | 40.0% | |
| TAGATAAGTGTCCTCAGGAT+AGG | + | chr7_4:10553572-10553591 | None:intergenic | 40.0% | |
| !! | GGTGGTTCTGGAATATTTGA+AGG | - | chr7_4:10553601-10553620 | Msa1139830:CDS | 40.0% |
| TCTCAAAGCATAGCTTGAAG+AGG | + | chr7_4:10552522-10552541 | None:intergenic | 40.0% | |
| AAGGATGTGAAAGCAGATGA+GGG | + | chr7_4:10552608-10552627 | None:intergenic | 40.0% | |
| AGAATGCAGCGTTCATCTTT+AGG | + | chr7_4:10552661-10552680 | None:intergenic | 40.0% | |
| TATGGTCACTTAGCAGTTCA+AGG | - | chr7_4:10553535-10553554 | Msa1139830:intron | 40.0% | |
| ACCATATTTGACCTATCCTG+AGG | - | chr7_4:10553558-10553577 | Msa1139830:intron | 40.0% | |
| TCCTCAGGATAGGTCAAATA+TGG | + | chr7_4:10553562-10553581 | None:intergenic | 40.0% | |
| TAGATAAGTGTCCTCAGGAT+AGG | + | chr7_4:10553572-10553591 | None:intergenic | 40.0% | |
| !! | GGTGGTTCTGGAATATTTGA+AGG | - | chr7_4:10553601-10553620 | Msa1139830:CDS | 40.0% |
| AGGATGTGAAAGCAGATGAG+GGG | + | chr7_4:10552607-10552626 | None:intergenic | 45.0% | |
| GAAGGATGTGAAAGCAGATG+AGG | + | chr7_4:10552609-10552628 | None:intergenic | 45.0% | |
| TGTCAGCATGCTCATTTGCT+TGG | + | chr7_4:10552733-10552752 | None:intergenic | 45.0% | |
| ACAGCTAGATAAGTGTCCTC+AGG | + | chr7_4:10553577-10553596 | None:intergenic | 45.0% | |
| GACACTTATCTAGCTGTGAC+TGG | - | chr7_4:10553580-10553599 | Msa1139830:CDS | 45.0% | |
| ACTTATCTAGCTGTGACTGG+TGG | - | chr7_4:10553583-10553602 | Msa1139830:CDS | 45.0% | |
| GATTTGCCTCAAGAGCTTCT+TGG | - | chr7_4:10553703-10553722 | Msa1139830:intron | 45.0% | |
| GGTTTACCAAGAAGCTCTTG+AGG | + | chr7_4:10553712-10553731 | None:intergenic | 45.0% | |
| AAACCAGCAATGACAGCATG+AGG | + | chr7_4:10553787-10553806 | None:intergenic | 45.0% | |
| AGGATGTGAAAGCAGATGAG+GGG | + | chr7_4:10552607-10552626 | None:intergenic | 45.0% | |
| GAAGGATGTGAAAGCAGATG+AGG | + | chr7_4:10552609-10552628 | None:intergenic | 45.0% | |
| TGTCAGCATGCTCATTTGCT+TGG | + | chr7_4:10552733-10552752 | None:intergenic | 45.0% | |
| ACAGCTAGATAAGTGTCCTC+AGG | + | chr7_4:10553577-10553596 | None:intergenic | 45.0% | |
| GACACTTATCTAGCTGTGAC+TGG | - | chr7_4:10553580-10553599 | Msa1139830:CDS | 45.0% | |
| ACTTATCTAGCTGTGACTGG+TGG | - | chr7_4:10553583-10553602 | Msa1139830:CDS | 45.0% | |
| GATTTGCCTCAAGAGCTTCT+TGG | - | chr7_4:10553703-10553722 | Msa1139830:intron | 45.0% | |
| GGTTTACCAAGAAGCTCTTG+AGG | + | chr7_4:10553712-10553731 | None:intergenic | 45.0% | |
| AAACCAGCAATGACAGCATG+AGG | + | chr7_4:10553787-10553806 | None:intergenic | 45.0% | |
| !!! | TAATTTGAAAATTTTAAAAT+AGG | + | chr7_4:10553227-10553246 | None:intergenic | 5.0% |
| !!! | TAAAATTTTCAAATTATTTA+AGG | - | chr7_4:10553231-10553250 | Msa1139830:intron | 5.0% |
| !!! | TAATTTGAAAATTTTAAAAT+AGG | + | chr7_4:10553227-10553246 | None:intergenic | 5.0% |
| !!! | TAAAATTTTCAAATTATTTA+AGG | - | chr7_4:10553231-10553250 | Msa1139830:intron | 5.0% |
| ! | AGGGGGTGAGGAAGGATTTT+GGG | + | chr7_4:10552589-10552608 | None:intergenic | 50.0% |
| GGATGTGAAAGCAGATGAGG+GGG | + | chr7_4:10552606-10552625 | None:intergenic | 50.0% | |
| GCAAATGAGCATGCTGACAC+TGG | - | chr7_4:10552734-10552753 | Msa1139830:CDS | 50.0% | |
| TCAAGTAAGCTGGGCTACCA+CGG | + | chr7_4:10552903-10552922 | None:intergenic | 50.0% | |
| GAAGCTTCAACAGCAGGAGA+AGG | + | chr7_4:10553742-10553761 | None:intergenic | 50.0% | |
| TGAAGCTTCTCCTGCTGCTA+AGG | - | chr7_4:10553753-10553772 | Msa1139830:intron | 50.0% | |
| ! | AGGGGGTGAGGAAGGATTTT+GGG | + | chr7_4:10552589-10552608 | None:intergenic | 50.0% |
| GGATGTGAAAGCAGATGAGG+GGG | + | chr7_4:10552606-10552625 | None:intergenic | 50.0% | |
| GCAAATGAGCATGCTGACAC+TGG | - | chr7_4:10552734-10552753 | Msa1139830:CDS | 50.0% | |
| TCAAGTAAGCTGGGCTACCA+CGG | + | chr7_4:10552903-10552922 | None:intergenic | 50.0% | |
| GAAGCTTCAACAGCAGGAGA+AGG | + | chr7_4:10553742-10553761 | None:intergenic | 50.0% | |
| TGAAGCTTCTCCTGCTGCTA+AGG | - | chr7_4:10553753-10553772 | Msa1139830:intron | 50.0% | |
| !!! | GAGGAAGGATTTTGGGGTGG+TGG | + | chr7_4:10552582-10552601 | None:intergenic | 55.0% |
| !! | GGTGAGGAAGGATTTTGGGG+TGG | + | chr7_4:10552585-10552604 | None:intergenic | 55.0% |
| ! | GGGGGTGAGGAAGGATTTTG+GGG | + | chr7_4:10552588-10552607 | None:intergenic | 55.0% |
| ! | GAGGGGGTGAGGAAGGATTT+TGG | + | chr7_4:10552590-10552609 | None:intergenic | 55.0% |
| TGAAAGCAGATGAGGGGGTG+AGG | + | chr7_4:10552601-10552620 | None:intergenic | 55.0% | |
| GAGCTTAATGAGAGGGACCG+TGG | - | chr7_4:10552883-10552902 | Msa1139830:CDS | 55.0% | |
| CTAGCTGTGACTGGTGGTTC+TGG | - | chr7_4:10553589-10553608 | Msa1139830:CDS | 55.0% | |
| ACAGCAGGAGAAGGCTCAAC+AGG | + | chr7_4:10553733-10553752 | None:intergenic | 55.0% | |
| GCAGGAGAAGCTTCAACAGC+AGG | + | chr7_4:10553748-10553767 | None:intergenic | 55.0% | |
| GAGCCTCATGCTGTCATTGC+TGG | - | chr7_4:10553781-10553800 | Msa1139830:intron | 55.0% | |
| !!! | GAGGAAGGATTTTGGGGTGG+TGG | + | chr7_4:10552582-10552601 | None:intergenic | 55.0% |
| !! | GGTGAGGAAGGATTTTGGGG+TGG | + | chr7_4:10552585-10552604 | None:intergenic | 55.0% |
| ! | GGGGGTGAGGAAGGATTTTG+GGG | + | chr7_4:10552588-10552607 | None:intergenic | 55.0% |
| ! | GAGGGGGTGAGGAAGGATTT+TGG | + | chr7_4:10552590-10552609 | None:intergenic | 55.0% |
| TGAAAGCAGATGAGGGGGTG+AGG | + | chr7_4:10552601-10552620 | None:intergenic | 55.0% | |
| GAGCTTAATGAGAGGGACCG+TGG | - | chr7_4:10552883-10552902 | Msa1139830:CDS | 55.0% | |
| CTAGCTGTGACTGGTGGTTC+TGG | - | chr7_4:10553589-10553608 | Msa1139830:CDS | 55.0% | |
| ACAGCAGGAGAAGGCTCAAC+AGG | + | chr7_4:10553733-10553752 | None:intergenic | 55.0% | |
| GCAGGAGAAGCTTCAACAGC+AGG | + | chr7_4:10553748-10553767 | None:intergenic | 55.0% | |
| GAGCCTCATGCTGTCATTGC+TGG | - | chr7_4:10553781-10553800 | Msa1139830:intron | 55.0% | |
| ! | GGGGTGGTGGCAAAAGCAGT+TGG | + | chr7_4:10552569-10552588 | None:intergenic | 60.0% |
| AGCAGATGAGGGGGTGAGGA+AGG | + | chr7_4:10552597-10552616 | None:intergenic | 60.0% | |
| GGCTCAAGAGCCTTAGCAGC+AGG | + | chr7_4:10553766-10553785 | None:intergenic | 60.0% | |
| ! | GGGGTGGTGGCAAAAGCAGT+TGG | + | chr7_4:10552569-10552588 | None:intergenic | 60.0% |
| AGCAGATGAGGGGGTGAGGA+AGG | + | chr7_4:10552597-10552616 | None:intergenic | 60.0% | |
| GGCTCAAGAGCCTTAGCAGC+AGG | + | chr7_4:10553766-10553785 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 10552451 | 10554088 | 10552451 | ID=Msa1139830;Name=Msa1139830 |
| chr7_4 | mRNA | 10552451 | 10554088 | 10552451 | ID=Msa1139830-mRNA-1;Parent=Msa1139830;Name=Msa1139830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=64|1|1|1|1|1|3|272|255 |
| chr7_4 | exon | 10552451 | 10553127 | 10552451 | ID=Msa1139830-mRNA-1:exon:2584;Parent=Msa1139830-mRNA-1 |
| chr7_4 | exon | 10553561 | 10553682 | 10553561 | ID=Msa1139830-mRNA-1:exon:2583;Parent=Msa1139830-mRNA-1 |
| chr7_4 | exon | 10553784 | 10554088 | 10553784 | ID=Msa1139830-mRNA-1:exon:2582;Parent=Msa1139830-mRNA-1 |
| chr7_4 | five_prime_UTR | 10554025 | 10554088 | 10554025 | ID=Msa1139830-mRNA-1:five_prime_utr;Parent=Msa1139830-mRNA-1 |
| chr7_4 | CDS | 10553784 | 10554024 | 10553784 | ID=Msa1139830-mRNA-1:cds;Parent=Msa1139830-mRNA-1 |
| chr7_4 | CDS | 10553561 | 10553682 | 10553561 | ID=Msa1139830-mRNA-1:cds;Parent=Msa1139830-mRNA-1 |
| chr7_4 | CDS | 10552723 | 10553127 | 10552723 | ID=Msa1139830-mRNA-1:cds;Parent=Msa1139830-mRNA-1 |
| chr7_4 | three_prime_UTR | 10552451 | 10552722 | 10552451 | ID=Msa1139830-mRNA-1:three_prime_utr;Parent=Msa1139830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
