AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051530 MtrunA17_Chr7g0220911 94.118 255 10 1 1 255 1 250 4.03e-178 489
Msa1051530 MtrunA17_Chr4g0034431 77.992 259 51 4 1 255 1 257 3.20e-144 404
Msa1051530 MtrunA17_Chr5g0422541 68.224 214 65 2 42 255 42 252 1.49e-103 301
Msa1051530 MtrunA17_Chr6g0456981 63.404 235 80 4 1 235 1 229 2.07e-100 292
Msa1051530 MtrunA17_Chr6g0456971 56.934 274 94 3 1 255 1 269 1.36e-98 289
Msa1051530 MtrunA17_Chr8g0364271 83.607 122 10 1 1 122 1 112 1.30e-65 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051530 AT1G13280.1 64.894 188 63 3 70 255 68 254 4.45e-85 254
Msa1051530 AT3G25780.1 62.245 196 71 3 62 255 64 258 4.83e-83 249
Msa1051530 AT3G25770.1 50.746 268 104 6 1 255 1 253 4.88e-82 246
Msa1051530 AT3G25760.1 50.382 262 115 7 1 255 1 254 6.46e-81 244

Find 68 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATCTACAGTTTCCATTT+TGG 0.157767 7_2:+18816743 Msa1051530:CDS
GAGACTGAAATATTAATTTA+TGG 0.178581 7_2:-18817236 None:intergenic
TTAATATTTCAGTCTCAATT+TGG 0.223489 7_2:+18817243 Msa1051530:three_prime_UTR
GAGCCTCATGCTGTCATTGC+TGG 0.269913 7_2:+18817016 Msa1051530:CDS
GGAATATTTGAAGGTGTTAA+AGG 0.277922 7_2:+18816845 Msa1051530:CDS
CTAGCTGTGACTGGTGGTTC+TGG 0.279570 7_2:+18816824 Msa1051530:CDS
AGAATGCAGTGTTCATCTTT+AGG 0.295981 7_2:-18815734 None:intergenic
TGCTTAGTTATATTGTTTGT+TGG 0.307818 7_2:-18815547 None:intergenic
TTGCAAGTAAAAGATTTCTT+AGG 0.309240 7_2:-18815780 None:intergenic
AAAGCAACATACTAAGATTT+AGG 0.317843 7_2:-18817358 None:intergenic
AGTGACCATAATCTCCAAAA+TGG 0.326462 7_2:-18816757 None:intergenic
TAATTAGTTGATTTAATTAG+TGG 0.334412 7_2:+18817045 Msa1051530:exon
GTATTATAAAATTAAAATAA+TGG 0.339229 7_2:-18817407 None:intergenic
GTTGTCGTCATCATTGAAAT+TGG 0.360779 7_2:+18817212 Msa1051530:three_prime_UTR
TCCTCAGGATAGGTTAAATA+TGG 0.365478 7_2:-18816794 None:intergenic
AAACGTATTGGTATAACAAC+TGG 0.370481 7_2:+18816668 Msa1051530:CDS
AATTAAAATAATGGATCATA+AGG 0.385507 7_2:-18817398 None:intergenic
AATTTACTTTGTTGCTGAAT+GGG 0.389231 7_2:-18816034 None:intergenic
GATTTGCCTCAAGAGCTTCT+TGG 0.394018 7_2:+18816938 Msa1051530:CDS
GAAGGGTGTGAAAGCGGAAG+AGG 0.409177 7_2:-18815682 None:intergenic
ACAGCAGGAGAAGGCTCAAC+AGG 0.409306 7_2:-18816965 None:intergenic
AAATTTACTTTGTTGCTGAA+TGG 0.410166 7_2:-18816035 None:intergenic
TTGCTTAATCTCAAGTAAGC+TGG 0.430132 7_2:-18815981 None:intergenic
AAGGGTGTGAAAGCGGAAGA+GGG 0.432598 7_2:-18815681 None:intergenic
AATAATAAGTGGTGTGATGA+TGG 0.455759 7_2:+18817090 Msa1051530:three_prime_UTR
TGTCAGCATACTCATTTGCT+TGG 0.464345 7_2:-18815806 None:intergenic
AATAAAAGTGTCAATTCTCT+TGG 0.471904 7_2:+18816002 Msa1051530:CDS
TGCTTAATCTCAAGTAAGCT+GGG 0.477724 7_2:-18815980 None:intergenic
GCAGGAGAAGCTTCAACAGC+AGG 0.485103 7_2:-18816980 None:intergenic
GGCTCAAGAGCCTTAGCAGC+AGG 0.487676 7_2:-18816998 None:intergenic
TGAAGCTTCTCCTGCTGCTA+AGG 0.489670 7_2:+18816988 Msa1051530:CDS
TTTAATGGAGAAATAATAAG+TGG 0.491460 7_2:+18817079 Msa1051530:three_prime_UTR
TATGGTCACTTAGCAGTTCA+AGG 0.495065 7_2:+18816770 Msa1051530:CDS
GGTGGTTCTGGAATATTTGA+AGG 0.514948 7_2:+18816836 Msa1051530:CDS
GTTGGATTAACAAAGGAAGA+TGG 0.515342 7_2:-18815624 None:intergenic
CTTATGTATCCCTCCTCTGA+TGG 0.516137 7_2:+18817331 Msa1051530:three_prime_UTR
ATTACGGAAATATTAACTTA+CGG 0.518843 7_2:-18817267 None:intergenic
CAACACATTGCAGAAAAGAA+AGG 0.527550 7_2:+18816707 Msa1051530:CDS
ATGTATCCCTCCTCTGATGG+TGG 0.537016 7_2:+18817334 Msa1051530:three_prime_UTR
TAGATAAGTGTCCTCAGGAT+AGG 0.537416 7_2:-18816804 None:intergenic
TCTATTCTTTCATCAAACAA+TGG 0.541530 7_2:+18815572 Msa1051530:exon
AGGGTGTGAAAGCGGAAGAG+GGG 0.545725 7_2:-18815680 None:intergenic
GGGTGTGAAAGCGGAAGAGG+GGG 0.552253 7_2:-18815679 None:intergenic
ACAGCTAGATAAGTGTCCTC+AGG 0.560526 7_2:-18816809 None:intergenic
AATGTGTAGAAAATCTTGAA+AGG 0.563806 7_2:-18816896 None:intergenic
TGAATTATGCAGTTATACAC+AGG 0.568803 7_2:+18816635 Msa1051530:intron
AGATGAATTTGATGAAGTGA+AGG 0.569673 7_2:-18815700 None:intergenic
GAAGCTTCAACAGCAGGAGA+AGG 0.572761 7_2:-18816974 None:intergenic
GACACTTATCTAGCTGTGAC+TGG 0.577356 7_2:+18816815 Msa1051530:CDS
GGTGTGGTGGCAAAAGCAGT+TGG 0.597148 7_2:-18815642 None:intergenic
TCAAGTAAGCTGGGCTACCA+CGG 0.602620 7_2:-18815971 None:intergenic
TTTAGGTCCACCATCAGAGG+AGG 0.606472 7_2:-18817341 None:intergenic
AGATTTAGGTCCACCATCAG+AGG 0.617087 7_2:-18817344 None:intergenic
TCTCAAAGCATAGCTTGAAG+AGG 0.618632 7_2:-18815595 None:intergenic
GCAAATGAGTATGCTGACAC+TGG 0.626985 7_2:+18815810 Msa1051530:CDS
GGTTTACCAAGAAGCTCTTG+AGG 0.629043 7_2:-18816944 None:intergenic
GATGAATTTGATGAAGTGAA+GGG 0.631012 7_2:-18815699 None:intergenic
CAATGATGACGACAACCACA+TGG 0.633334 7_2:-18817205 None:intergenic
AAACCAGCAATGACAGCATG+AGG 0.634146 7_2:-18817019 None:intergenic
AAAAGCAGTTGGATTAACAA+AGG 0.635467 7_2:-18815631 None:intergenic
ACTTATCTAGCTGTGACTGG+TGG 0.640066 7_2:+18816818 Msa1051530:CDS
TGAAGTGAAGGGTGTGAAAG+CGG 0.642059 7_2:-18815688 None:intergenic
TTAGGTCCACCATCAGAGGA+GGG 0.668338 7_2:-18817340 None:intergenic
GAGCTTAATGAGAGGGACCG+TGG 0.672691 7_2:+18815954 Msa1051530:CDS
ACCATATTTAACCTATCCTG+AGG 0.673220 7_2:+18816793 Msa1051530:CDS
ATTTATGCAAAAGTACCATG+TGG 0.680195 7_2:+18817190 Msa1051530:three_prime_UTR
TGTGTATGAGCTTAATGAGA+GGG 0.682673 7_2:+18815947 Msa1051530:CDS
ATGTGTATGAGCTTAATGAG+AGG 0.762359 7_2:+18815946 Msa1051530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCAAATTATAAAAAATTAA+GGG + chr7_2:18816337-18816356 Msa1051530:intron 10.0%
!! ACCAAATTATAAAAAATTAA+GGG + chr7_2:18816337-18816356 Msa1051530:intron 10.0%
!! ATCACAAAAATAAAATATAG+TGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTATTGATAGTTTTACTAT+CGG + chr7_2:18816100-18816119 Msa1051530:intron 15.0%
!! ATCACAAAAATAAAATATAG+AGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTATTGATAGTTTTACTAT+CGG + chr7_2:18816100-18816119 Msa1051530:intron 15.0%
!! ATCACAAAAATAAAATATAG+AGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTTTCGATAGTTTTTTTAT+CGG + chr7_2:18816268-18816287 Msa1051530:intron 15.0%
!! GACCAAATTATAAAAAATTA+AGG + chr7_2:18816336-18816355 Msa1051530:intron 15.0%
!!! ACCCTTAATTTTTTATAATT+TGG - chr7_2:18816341-18816360 None:intergenic 15.0%
!! TTCCATTAAAAAATTGTTTA+TGG + chr7_2:18816368-18816387 Msa1051530:intron 15.0%
!!! ATCCATAAACAATTTTTTAA+TGG - chr7_2:18816373-18816392 None:intergenic 15.0%
!!! AATTGCAATTTTTTTTTCTT+CGG + chr7_2:18816426-18816445 Msa1051530:intron 15.0%
!!! TAATTAGTTGATTTAATTAG+TGG + chr7_2:18817045-18817064 Msa1051530:exon 15.0%
!!! AATTAAAATAATGGATCATA+AGG - chr7_2:18817401-18817420 None:intergenic 15.0%
!! ATCACAAAAATAAAATATAG+TGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTATTGATAGTTTTACTAT+CGG + chr7_2:18816100-18816119 Msa1051530:intron 15.0%
!! ATCACAAAAATAAAATATAG+AGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTATTGATAGTTTTACTAT+CGG + chr7_2:18816100-18816119 Msa1051530:intron 15.0%
!! ATCACAAAAATAAAATATAG+AGG - chr7_2:18816076-18816095 None:intergenic 15.0%
!!! ATTTTCGATAGTTTTTTTAT+CGG + chr7_2:18816268-18816287 Msa1051530:intron 15.0%
!! GACCAAATTATAAAAAATTA+AGG + chr7_2:18816336-18816355 Msa1051530:intron 15.0%
!!! ACCCTTAATTTTTTATAATT+TGG - chr7_2:18816341-18816360 None:intergenic 15.0%
!! TTCCATTAAAAAATTGTTTA+TGG + chr7_2:18816368-18816387 Msa1051530:intron 15.0%
!!! ATCCATAAACAATTTTTTAA+TGG - chr7_2:18816373-18816392 None:intergenic 15.0%
!!! AATTGCAATTTTTTTTTCTT+CGG + chr7_2:18816426-18816445 Msa1051530:intron 15.0%
!!! TAATTAGTTGATTTAATTAG+TGG + chr7_2:18817045-18817064 Msa1051530:exon 15.0%
!!! AATTAAAATAATGGATCATA+AGG - chr7_2:18817401-18817420 None:intergenic 15.0%
!!! TTTAGAAAAGCATGTATATT+TGG - chr7_2:18815853-18815872 None:intergenic 20.0%
!! CATAAATCATAAACAAAAGA+AGG - chr7_2:18816507-18816526 None:intergenic 20.0%
!!! TTTTCTACACATTTTATTTG+AGG + chr7_2:18816906-18816925 Msa1051530:CDS 20.0%
!!! TTTCTACACATTTTATTTGA+GGG + chr7_2:18816907-18816926 Msa1051530:CDS 20.0%
!! TTTAATGGAGAAATAATAAG+TGG + chr7_2:18817079-18817098 Msa1051530:three_prime_UTR 20.0%
!! GAGACTGAAATATTAATTTA+TGG - chr7_2:18817239-18817258 None:intergenic 20.0%
!! TTAATATTTCAGTCTCAATT+TGG + chr7_2:18817243-18817262 Msa1051530:three_prime_UTR 20.0%
!! ATTACGGAAATATTAACTTA+CGG - chr7_2:18817270-18817289 None:intergenic 20.0%
!! AAAAAAGAAGAAAGCAATTA+CGG - chr7_2:18817286-18817305 None:intergenic 20.0%
!!! TTTAGAAAAGCATGTATATT+TGG - chr7_2:18815853-18815872 None:intergenic 20.0%
!! CATAAATCATAAACAAAAGA+AGG - chr7_2:18816507-18816526 None:intergenic 20.0%
!!! TTTTCTACACATTTTATTTG+AGG + chr7_2:18816906-18816925 Msa1051530:CDS 20.0%
!!! TTTCTACACATTTTATTTGA+GGG + chr7_2:18816907-18816926 Msa1051530:CDS 20.0%
!! TTTAATGGAGAAATAATAAG+TGG + chr7_2:18817079-18817098 Msa1051530:three_prime_UTR 20.0%
!! GAGACTGAAATATTAATTTA+TGG - chr7_2:18817239-18817258 None:intergenic 20.0%
!! TTAATATTTCAGTCTCAATT+TGG + chr7_2:18817243-18817262 Msa1051530:three_prime_UTR 20.0%
!! ATTACGGAAATATTAACTTA+CGG - chr7_2:18817270-18817289 None:intergenic 20.0%
!! AAAAAAGAAGAAAGCAATTA+CGG - chr7_2:18817286-18817305 None:intergenic 20.0%
! TGCTTAGTTATATTGTTTGT+TGG - chr7_2:18815550-18815569 None:intergenic 25.0%
! TCTATTCTTTCATCAAACAA+TGG + chr7_2:18815572-18815591 Msa1051530:exon 25.0%
! TTGCAAGTAAAAGATTTCTT+AGG - chr7_2:18815783-18815802 None:intergenic 25.0%
!!! AATAAAAGTGTCAATTCTCT+TGG + chr7_2:18816002-18816021 Msa1051530:CDS 25.0%
! AATTTACTTTGTTGCTGAAT+GGG - chr7_2:18816037-18816056 None:intergenic 25.0%
! AAATTTACTTTGTTGCTGAA+TGG - chr7_2:18816038-18816057 None:intergenic 25.0%
!!! TTCCATGAACTATTTTAGTA+GGG + chr7_2:18816314-18816333 Msa1051530:intron 25.0%
!! TTATACCAATACGTTTTTGT+AGG - chr7_2:18816664-18816683 None:intergenic 25.0%
! AATGTGTAGAAAATCTTGAA+AGG - chr7_2:18816899-18816918 None:intergenic 25.0%
!!! TTCTACACATTTTATTTGAG+GGG + chr7_2:18816908-18816927 Msa1051530:CDS 25.0%
!!! ATTTTATTTGAGGGGTATTA+AGG + chr7_2:18816916-18816935 Msa1051530:CDS 25.0%
!!! GTGGTTTTTGTTTTGTTTAA+TGG + chr7_2:18817064-18817083 Msa1051530:three_prime_UTR 25.0%
! AAAGCAACATACTAAGATTT+AGG - chr7_2:18817361-18817380 None:intergenic 25.0%
! TGCTTAGTTATATTGTTTGT+TGG - chr7_2:18815550-18815569 None:intergenic 25.0%
! TCTATTCTTTCATCAAACAA+TGG + chr7_2:18815572-18815591 Msa1051530:exon 25.0%
! TTGCAAGTAAAAGATTTCTT+AGG - chr7_2:18815783-18815802 None:intergenic 25.0%
!!! AATAAAAGTGTCAATTCTCT+TGG + chr7_2:18816002-18816021 Msa1051530:CDS 25.0%
! AATTTACTTTGTTGCTGAAT+GGG - chr7_2:18816037-18816056 None:intergenic 25.0%
! AAATTTACTTTGTTGCTGAA+TGG - chr7_2:18816038-18816057 None:intergenic 25.0%
!!! TTCCATGAACTATTTTAGTA+GGG + chr7_2:18816314-18816333 Msa1051530:intron 25.0%
!! TTATACCAATACGTTTTTGT+AGG - chr7_2:18816664-18816683 None:intergenic 25.0%
! AATGTGTAGAAAATCTTGAA+AGG - chr7_2:18816899-18816918 None:intergenic 25.0%
!!! TTCTACACATTTTATTTGAG+GGG + chr7_2:18816908-18816927 Msa1051530:CDS 25.0%
!!! ATTTTATTTGAGGGGTATTA+AGG + chr7_2:18816916-18816935 Msa1051530:CDS 25.0%
!!! GTGGTTTTTGTTTTGTTTAA+TGG + chr7_2:18817064-18817083 Msa1051530:three_prime_UTR 25.0%
! AAAGCAACATACTAAGATTT+AGG - chr7_2:18817361-18817380 None:intergenic 25.0%
AAAAGCAGTTGGATTAACAA+AGG - chr7_2:18815634-18815653 None:intergenic 30.0%
GATGAATTTGATGAAGTGAA+GGG - chr7_2:18815702-18815721 None:intergenic 30.0%
AGATGAATTTGATGAAGTGA+AGG - chr7_2:18815703-18815722 None:intergenic 30.0%
CTAAAATAGTTCATGGAAGT+TGG - chr7_2:18816312-18816331 None:intergenic 30.0%
!!! CTTCCATGAACTATTTTAGT+AGG + chr7_2:18816313-18816332 Msa1051530:intron 30.0%
TGAATTATGCAGTTATACAC+AGG + chr7_2:18816635-18816654 Msa1051530:intron 30.0%
! AAACGTATTGGTATAACAAC+TGG + chr7_2:18816668-18816687 Msa1051530:CDS 30.0%
!! AGTTTCCATTTTGGAGATTA+TGG + chr7_2:18816752-18816771 Msa1051530:CDS 30.0%
!! GGAATATTTGAAGGTGTTAA+AGG + chr7_2:18816845-18816864 Msa1051530:CDS 30.0%
AATAATAAGTGGTGTGATGA+TGG + chr7_2:18817090-18817109 Msa1051530:three_prime_UTR 30.0%
!!! GTTTTTTGAGTTGTAATGCT+TGG + chr7_2:18817133-18817152 Msa1051530:three_prime_UTR 30.0%
!! ATTTATGCAAAAGTACCATG+TGG + chr7_2:18817190-18817209 Msa1051530:three_prime_UTR 30.0%
!! TTTTTCTTCTAGTTATGCAG+TGG + chr7_2:18817301-18817320 Msa1051530:three_prime_UTR 30.0%
AAAAGCAGTTGGATTAACAA+AGG - chr7_2:18815634-18815653 None:intergenic 30.0%
GATGAATTTGATGAAGTGAA+GGG - chr7_2:18815702-18815721 None:intergenic 30.0%
AGATGAATTTGATGAAGTGA+AGG - chr7_2:18815703-18815722 None:intergenic 30.0%
CTAAAATAGTTCATGGAAGT+TGG - chr7_2:18816312-18816331 None:intergenic 30.0%
!!! CTTCCATGAACTATTTTAGT+AGG + chr7_2:18816313-18816332 Msa1051530:intron 30.0%
TGAATTATGCAGTTATACAC+AGG + chr7_2:18816635-18816654 Msa1051530:intron 30.0%
! AAACGTATTGGTATAACAAC+TGG + chr7_2:18816668-18816687 Msa1051530:CDS 30.0%
!! AGTTTCCATTTTGGAGATTA+TGG + chr7_2:18816752-18816771 Msa1051530:CDS 30.0%
!! GGAATATTTGAAGGTGTTAA+AGG + chr7_2:18816845-18816864 Msa1051530:CDS 30.0%
AATAATAAGTGGTGTGATGA+TGG + chr7_2:18817090-18817109 Msa1051530:three_prime_UTR 30.0%
!!! GTTTTTTGAGTTGTAATGCT+TGG + chr7_2:18817133-18817152 Msa1051530:three_prime_UTR 30.0%
!! ATTTATGCAAAAGTACCATG+TGG + chr7_2:18817190-18817209 Msa1051530:three_prime_UTR 30.0%
!! TTTTTCTTCTAGTTATGCAG+TGG + chr7_2:18817301-18817320 Msa1051530:three_prime_UTR 30.0%
GTTGGATTAACAAAGGAAGA+TGG - chr7_2:18815627-18815646 None:intergenic 35.0%
AGAATGCAGTGTTCATCTTT+AGG - chr7_2:18815737-18815756 None:intergenic 35.0%
ATGTGTATGAGCTTAATGAG+AGG + chr7_2:18815946-18815965 Msa1051530:CDS 35.0%
TGTGTATGAGCTTAATGAGA+GGG + chr7_2:18815947-18815966 Msa1051530:CDS 35.0%
TGCTTAATCTCAAGTAAGCT+GGG - chr7_2:18815983-18816002 None:intergenic 35.0%
TTGCTTAATCTCAAGTAAGC+TGG - chr7_2:18815984-18816003 None:intergenic 35.0%
GTCCCTACTAAAATAGTTCA+TGG - chr7_2:18816319-18816338 None:intergenic 35.0%
GACACAAAATGAGACTACTA+CGG - chr7_2:18816542-18816561 None:intergenic 35.0%
! CTTTCTTTTCTGCAATGTGT+TGG - chr7_2:18816709-18816728 None:intergenic 35.0%
CAACACATTGCAGAAAAGAA+AGG + chr7_2:18816707-18816726 Msa1051530:CDS 35.0%
! GCTATCTACAGTTTCCATTT+TGG + chr7_2:18816743-18816762 Msa1051530:CDS 35.0%
AGTGACCATAATCTCCAAAA+TGG - chr7_2:18816760-18816779 None:intergenic 35.0%
ACCATATTTAACCTATCCTG+AGG + chr7_2:18816793-18816812 Msa1051530:CDS 35.0%
TCCTCAGGATAGGTTAAATA+TGG - chr7_2:18816797-18816816 None:intergenic 35.0%
!!! TGTGATGATGGATTTTGTGA+TGG + chr7_2:18817102-18817121 Msa1051530:three_prime_UTR 35.0%
GTTGTCGTCATCATTGAAAT+TGG + chr7_2:18817212-18817231 Msa1051530:three_prime_UTR 35.0%
GTTGGATTAACAAAGGAAGA+TGG - chr7_2:18815627-18815646 None:intergenic 35.0%
AGAATGCAGTGTTCATCTTT+AGG - chr7_2:18815737-18815756 None:intergenic 35.0%
ATGTGTATGAGCTTAATGAG+AGG + chr7_2:18815946-18815965 Msa1051530:CDS 35.0%
TGTGTATGAGCTTAATGAGA+GGG + chr7_2:18815947-18815966 Msa1051530:CDS 35.0%
TGCTTAATCTCAAGTAAGCT+GGG - chr7_2:18815983-18816002 None:intergenic 35.0%
TTGCTTAATCTCAAGTAAGC+TGG - chr7_2:18815984-18816003 None:intergenic 35.0%
GTCCCTACTAAAATAGTTCA+TGG - chr7_2:18816319-18816338 None:intergenic 35.0%
GACACAAAATGAGACTACTA+CGG - chr7_2:18816542-18816561 None:intergenic 35.0%
! CTTTCTTTTCTGCAATGTGT+TGG - chr7_2:18816709-18816728 None:intergenic 35.0%
CAACACATTGCAGAAAAGAA+AGG + chr7_2:18816707-18816726 Msa1051530:CDS 35.0%
! GCTATCTACAGTTTCCATTT+TGG + chr7_2:18816743-18816762 Msa1051530:CDS 35.0%
AGTGACCATAATCTCCAAAA+TGG - chr7_2:18816760-18816779 None:intergenic 35.0%
ACCATATTTAACCTATCCTG+AGG + chr7_2:18816793-18816812 Msa1051530:CDS 35.0%
TCCTCAGGATAGGTTAAATA+TGG - chr7_2:18816797-18816816 None:intergenic 35.0%
!!! TGTGATGATGGATTTTGTGA+TGG + chr7_2:18817102-18817121 Msa1051530:three_prime_UTR 35.0%
GTTGTCGTCATCATTGAAAT+TGG + chr7_2:18817212-18817231 Msa1051530:three_prime_UTR 35.0%
TCTCAAAGCATAGCTTGAAG+AGG - chr7_2:18815598-18815617 None:intergenic 40.0%
TGTCAGCATACTCATTTGCT+TGG - chr7_2:18815809-18815828 None:intergenic 40.0%
GGTGACCTACAAAAACGTAT+TGG + chr7_2:18816656-18816675 Msa1051530:CDS 40.0%
TATGGTCACTTAGCAGTTCA+AGG + chr7_2:18816770-18816789 Msa1051530:CDS 40.0%
TAGATAAGTGTCCTCAGGAT+AGG - chr7_2:18816807-18816826 None:intergenic 40.0%
!! GGTGGTTCTGGAATATTTGA+AGG + chr7_2:18816836-18816855 Msa1051530:CDS 40.0%
TCTCAAAGCATAGCTTGAAG+AGG - chr7_2:18815598-18815617 None:intergenic 40.0%
TGTCAGCATACTCATTTGCT+TGG - chr7_2:18815809-18815828 None:intergenic 40.0%
GGTGACCTACAAAAACGTAT+TGG + chr7_2:18816656-18816675 Msa1051530:CDS 40.0%
TATGGTCACTTAGCAGTTCA+AGG + chr7_2:18816770-18816789 Msa1051530:CDS 40.0%
TAGATAAGTGTCCTCAGGAT+AGG - chr7_2:18816807-18816826 None:intergenic 40.0%
!! GGTGGTTCTGGAATATTTGA+AGG + chr7_2:18816836-18816855 Msa1051530:CDS 40.0%
! TGAAGTGAAGGGTGTGAAAG+CGG - chr7_2:18815691-18815710 None:intergenic 45.0%
GCAAATGAGTATGCTGACAC+TGG + chr7_2:18815810-18815829 Msa1051530:CDS 45.0%
ACAGCTAGATAAGTGTCCTC+AGG - chr7_2:18816812-18816831 None:intergenic 45.0%
GACACTTATCTAGCTGTGAC+TGG + chr7_2:18816815-18816834 Msa1051530:CDS 45.0%
ACTTATCTAGCTGTGACTGG+TGG + chr7_2:18816818-18816837 Msa1051530:CDS 45.0%
GATTTGCCTCAAGAGCTTCT+TGG + chr7_2:18816938-18816957 Msa1051530:CDS 45.0%
GGTTTACCAAGAAGCTCTTG+AGG - chr7_2:18816947-18816966 None:intergenic 45.0%
AAACCAGCAATGACAGCATG+AGG - chr7_2:18817022-18817041 None:intergenic 45.0%
! CAATGATGACGACAACCACA+TGG - chr7_2:18817208-18817227 None:intergenic 45.0%
CTTATGTATCCCTCCTCTGA+TGG + chr7_2:18817331-18817350 Msa1051530:three_prime_UTR 45.0%
AGATTTAGGTCCACCATCAG+AGG - chr7_2:18817347-18817366 None:intergenic 45.0%
! TGAAGTGAAGGGTGTGAAAG+CGG - chr7_2:18815691-18815710 None:intergenic 45.0%
GCAAATGAGTATGCTGACAC+TGG + chr7_2:18815810-18815829 Msa1051530:CDS 45.0%
ACAGCTAGATAAGTGTCCTC+AGG - chr7_2:18816812-18816831 None:intergenic 45.0%
GACACTTATCTAGCTGTGAC+TGG + chr7_2:18816815-18816834 Msa1051530:CDS 45.0%
ACTTATCTAGCTGTGACTGG+TGG + chr7_2:18816818-18816837 Msa1051530:CDS 45.0%
GATTTGCCTCAAGAGCTTCT+TGG + chr7_2:18816938-18816957 Msa1051530:CDS 45.0%
GGTTTACCAAGAAGCTCTTG+AGG - chr7_2:18816947-18816966 None:intergenic 45.0%
AAACCAGCAATGACAGCATG+AGG - chr7_2:18817022-18817041 None:intergenic 45.0%
! CAATGATGACGACAACCACA+TGG - chr7_2:18817208-18817227 None:intergenic 45.0%
CTTATGTATCCCTCCTCTGA+TGG + chr7_2:18817331-18817350 Msa1051530:three_prime_UTR 45.0%
AGATTTAGGTCCACCATCAG+AGG - chr7_2:18817347-18817366 None:intergenic 45.0%
!!! TTATTTGAAAATTTTAAAAT+AGG - chr7_2:18816460-18816479 None:intergenic 5.0%
!!! TAAAATTTTCAAATAATTTA+AGG + chr7_2:18816464-18816483 Msa1051530:intron 5.0%
!! GTATTATAAAATTAAAATAA+TGG - chr7_2:18817410-18817429 None:intergenic 5.0%
!!! TTATTTGAAAATTTTAAAAT+AGG - chr7_2:18816460-18816479 None:intergenic 5.0%
!!! TAAAATTTTCAAATAATTTA+AGG + chr7_2:18816464-18816483 Msa1051530:intron 5.0%
!! GTATTATAAAATTAAAATAA+TGG - chr7_2:18817410-18817429 None:intergenic 5.0%
!! GAGGAACGATTTTGGTGTGG+TGG - chr7_2:18815658-18815677 None:intergenic 50.0%
!! GGTGAGGAACGATTTTGGTG+TGG - chr7_2:18815661-18815680 None:intergenic 50.0%
! AAGGGTGTGAAAGCGGAAGA+GGG - chr7_2:18815684-18815703 None:intergenic 50.0%
TCAAGTAAGCTGGGCTACCA+CGG - chr7_2:18815974-18815993 None:intergenic 50.0%
GAAGCTTCAACAGCAGGAGA+AGG - chr7_2:18816977-18816996 None:intergenic 50.0%
TGAAGCTTCTCCTGCTGCTA+AGG + chr7_2:18816988-18817007 Msa1051530:CDS 50.0%
ATGTATCCCTCCTCTGATGG+TGG + chr7_2:18817334-18817353 Msa1051530:three_prime_UTR 50.0%
TTAGGTCCACCATCAGAGGA+GGG - chr7_2:18817343-18817362 None:intergenic 50.0%
TTTAGGTCCACCATCAGAGG+AGG - chr7_2:18817344-18817363 None:intergenic 50.0%
!! GAGGAACGATTTTGGTGTGG+TGG - chr7_2:18815658-18815677 None:intergenic 50.0%
!! GGTGAGGAACGATTTTGGTG+TGG - chr7_2:18815661-18815680 None:intergenic 50.0%
! AAGGGTGTGAAAGCGGAAGA+GGG - chr7_2:18815684-18815703 None:intergenic 50.0%
TCAAGTAAGCTGGGCTACCA+CGG - chr7_2:18815974-18815993 None:intergenic 50.0%
GAAGCTTCAACAGCAGGAGA+AGG - chr7_2:18816977-18816996 None:intergenic 50.0%
TGAAGCTTCTCCTGCTGCTA+AGG + chr7_2:18816988-18817007 Msa1051530:CDS 50.0%
ATGTATCCCTCCTCTGATGG+TGG + chr7_2:18817334-18817353 Msa1051530:three_prime_UTR 50.0%
TTAGGTCCACCATCAGAGGA+GGG - chr7_2:18817343-18817362 None:intergenic 50.0%
TTTAGGTCCACCATCAGAGG+AGG - chr7_2:18817344-18817363 None:intergenic 50.0%
GGTGTGGTGGCAAAAGCAGT+TGG - chr7_2:18815645-18815664 None:intergenic 55.0%
! GAGGGGGTGAGGAACGATTT+TGG - chr7_2:18815666-18815685 None:intergenic 55.0%
AGGGTGTGAAAGCGGAAGAG+GGG - chr7_2:18815683-18815702 None:intergenic 55.0%
! GAAGGGTGTGAAAGCGGAAG+AGG - chr7_2:18815685-18815704 None:intergenic 55.0%
GAGCTTAATGAGAGGGACCG+TGG + chr7_2:18815954-18815973 Msa1051530:CDS 55.0%
CTAGCTGTGACTGGTGGTTC+TGG + chr7_2:18816824-18816843 Msa1051530:CDS 55.0%
ACAGCAGGAGAAGGCTCAAC+AGG - chr7_2:18816968-18816987 None:intergenic 55.0%
GCAGGAGAAGCTTCAACAGC+AGG - chr7_2:18816983-18817002 None:intergenic 55.0%
GAGCCTCATGCTGTCATTGC+TGG + chr7_2:18817016-18817035 Msa1051530:CDS 55.0%
GGTGTGGTGGCAAAAGCAGT+TGG - chr7_2:18815645-18815664 None:intergenic 55.0%
! GAGGGGGTGAGGAACGATTT+TGG - chr7_2:18815666-18815685 None:intergenic 55.0%
AGGGTGTGAAAGCGGAAGAG+GGG - chr7_2:18815683-18815702 None:intergenic 55.0%
! GAAGGGTGTGAAAGCGGAAG+AGG - chr7_2:18815685-18815704 None:intergenic 55.0%
GAGCTTAATGAGAGGGACCG+TGG + chr7_2:18815954-18815973 Msa1051530:CDS 55.0%
CTAGCTGTGACTGGTGGTTC+TGG + chr7_2:18816824-18816843 Msa1051530:CDS 55.0%
ACAGCAGGAGAAGGCTCAAC+AGG - chr7_2:18816968-18816987 None:intergenic 55.0%
GCAGGAGAAGCTTCAACAGC+AGG - chr7_2:18816983-18817002 None:intergenic 55.0%
GAGCCTCATGCTGTCATTGC+TGG + chr7_2:18817016-18817035 Msa1051530:CDS 55.0%
TGAAAGCGGAAGAGGGGGTG+AGG - chr7_2:18815677-18815696 None:intergenic 60.0%
GGGTGTGAAAGCGGAAGAGG+GGG - chr7_2:18815682-18815701 None:intergenic 60.0%
GGCTCAAGAGCCTTAGCAGC+AGG - chr7_2:18817001-18817020 None:intergenic 60.0%
TGAAAGCGGAAGAGGGGGTG+AGG - chr7_2:18815677-18815696 None:intergenic 60.0%
GGGTGTGAAAGCGGAAGAGG+GGG - chr7_2:18815682-18815701 None:intergenic 60.0%
GGCTCAAGAGCCTTAGCAGC+AGG - chr7_2:18817001-18817020 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 18815527 18817434 18815527 ID=Msa1051530;Name=Msa1051530
chr7_2 mRNA 18815527 18817434 18815527 ID=Msa1051530-mRNA-1;Parent=Msa1051530;Name=Msa1051530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=64|1|1|1|1|1|3|383|255
chr7_2 exon 18815527 18815831 18815527 ID=Msa1051530-mRNA-1:exon:4157;Parent=Msa1051530-mRNA-1
chr7_2 exon 18815928 18816049 18815928 ID=Msa1051530-mRNA-1:exon:4158;Parent=Msa1051530-mRNA-1
chr7_2 exon 18816647 18817434 18816647 ID=Msa1051530-mRNA-1:exon:4159;Parent=Msa1051530-mRNA-1
chr7_2 five_prime_UTR 18815527 18815590 18815527 ID=Msa1051530-mRNA-1:five_prime_utr;Parent=Msa1051530-mRNA-1
chr7_2 CDS 18815591 18815831 18815591 ID=Msa1051530-mRNA-1:cds;Parent=Msa1051530-mRNA-1
chr7_2 CDS 18815928 18816049 18815928 ID=Msa1051530-mRNA-1:cds;Parent=Msa1051530-mRNA-1
chr7_2 CDS 18816647 18817051 18816647 ID=Msa1051530-mRNA-1:cds;Parent=Msa1051530-mRNA-1
chr7_2 three_prime_UTR 18817052 18817434 18817052 ID=Msa1051530-mRNA-1:three_prime_utr;Parent=Msa1051530-mRNA-1
Gene Sequence

>Msa1051530

ATGGCCTCTTCAAGCTATGCTTTGAGAACTATTCCATCTTCCTTTGTTAATCCAACTGCTTTTGCCACCACACCAAAATCGTTCCTCACCCCCTCTTCCGCTTTCACACCCTTCACTTCATCAAATTCATCTCTCACAAAGAACCTAAAGATGAACACTGCATTCTCACAATCTTGCTTTTCTTCTGTGCCTAAGAAATCTTTTACTTGCAAAAGCCAAGCAAATGAGTATGCTGACACTGAAAAAGTTCAAGAAATGCATGTGTATGAGCTTAATGAGAGGGACCGTGGTAGCCCAGCTTACTTGAGATTAAGCAATAAAAGTGTCAATTCTCTTGGTGATTTAGTCCCATTCAGCAACAAATTATACACAGGTGACCTACAAAAACGTATTGGTATAACAACTGGAATTTGCATATTAATCCAACACATTGCAGAAAAGAAAGGTGATAGATATGAAGCTATCTACAGTTTCCATTTTGGAGATTATGGTCACTTAGCAGTTCAAGGACCATATTTAACCTATCCTGAGGACACTTATCTAGCTGTGACTGGTGGTTCTGGAATATTTGAAGGTGTTAAAGGTCAAGTGAAGTTGCATCAAATTGTTTTTCCTTTCAAGATTTTCTACACATTTTATTTGAGGGGTATTAAGGATTTGCCTCAAGAGCTTCTTGGTAAACCTGTTGAGCCTTCTCCTGCTGTTGAAGCTTCTCCTGCTGCTAAGGCTCTTGAGCCTCATGCTGTCATTGCTGGTTTTACTAATTAG

Protein sequence

>Msa1051530

MASSSYALRTIPSSFVNPTAFATTPKSFLTPSSAFTPFTSSNSSLTKNLKMNTAFSQSCFSSVPKKSFTCKSQANEYADTEKVQEMHVYELNERDRGSPAYLRLSNKSVNSLGDLVPFSNKLYTGDLQKRIGITTGICILIQHIAEKKGDRYEAIYSFHFGDYGHLAVQGPYLTYPEDTYLAVTGGSGIFEGVKGQVKLHQIVFPFKIFYTFYLRGIKDLPQELLGKPVEPSPAVEASPAAKALEPHAVIAGFTN*