Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140160 | XP_003621615.2 | 85.669 | 314 | 4 | 1 | 1 | 314 | 1 | 273 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140160 | sp|Q4FZQ0|YF1BB_XENLA | 29.197 | 274 | 133 | 11 | 45 | 305 | 69 | 294 | 5.35e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140160 | G7KSU9 | 85.669 | 314 | 4 | 1 | 1 | 314 | 1 | 273 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0773850 | Msa1140160 | 0.802207 | 6.260872e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140160 | MtrunA17_Chr7g0221381 | 85.669 | 314 | 4 | 1 | 1 | 314 | 1 | 273 | 0.0 | 531 |
| Msa1140160 | MtrunA17_Chr6g0456411 | 74.841 | 314 | 34 | 3 | 1 | 314 | 1 | 269 | 2.59e-164 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140160 | AT3G59500.2 | 70.159 | 315 | 45 | 3 | 1 | 313 | 1 | 268 | 1.20e-155 | 436 |
| Msa1140160 | AT3G59500.1 | 70.159 | 315 | 45 | 3 | 1 | 313 | 1 | 268 | 1.20e-155 | 436 |
| Msa1140160 | AT1G30890.1 | 69.427 | 314 | 51 | 2 | 1 | 314 | 1 | 269 | 1.48e-153 | 431 |
| Msa1140160 | AT1G30890.2 | 69.427 | 314 | 51 | 2 | 1 | 314 | 1 | 269 | 1.48e-153 | 431 |
Find 95 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGCACATAACGTTTC+TGG | 0.152216 | 7_4:-11550103 | None:intergenic |
| AGGTTTAATTGCAAAGTTTA+AGG | 0.169490 | 7_4:+11547554 | Msa1140160:five_prime_UTR |
| AGTATGGCCTTCAATAAATT+TGG | 0.177118 | 7_4:+11552746 | Msa1140160:three_prime_UTR |
| CATTCACTTGGAAGTAATAT+TGG | 0.215642 | 7_4:-11549577 | None:intergenic |
| GCATTTAATGCTGCCGGTTC+TGG | 0.228445 | 7_4:+11548760 | Msa1140160:CDS |
| GGCATGTCTTTGGCTGTTCT+TGG | 0.258756 | 7_4:+11552328 | Msa1140160:CDS |
| TTGGAAGTTGAGGCTGAAAT+TGG | 0.266583 | 7_4:-11548708 | None:intergenic |
| GGTACCTATGTTGTGCTTGC+TGG | 0.276469 | 7_4:+11549862 | Msa1140160:CDS |
| TAGGAAATTTATTCATGTTA+TGG | 0.288756 | 7_4:-11550018 | None:intergenic |
| GGAGCATTTATGTCGTAAAT+TGG | 0.289759 | 7_4:-11549811 | None:intergenic |
| ATTCACTTGGAAGTAATATT+GGG | 0.296238 | 7_4:-11549576 | None:intergenic |
| TAGCCTTTGCAAAAGTGATT+TGG | 0.299266 | 7_4:+11550075 | Msa1140160:CDS |
| AATAACCAGTTTAATGCTTC+AGG | 0.308938 | 7_4:-11552184 | None:intergenic |
| ATTCATGTTATGGACTAGTT+TGG | 0.322856 | 7_4:-11550008 | None:intergenic |
| AACTCCTGACTTCGGCAAAA+AGG | 0.323609 | 7_4:-11552441 | None:intergenic |
| TCTCTTGCTCTTCATTGCTT+TGG | 0.324393 | 7_4:+11552486 | Msa1140160:CDS |
| AGCTCACAACCTAATGTGTT+TGG | 0.336218 | 7_4:+11548733 | Msa1140160:CDS |
| ATTCTAATGTTTAGGGTCAT+TGG | 0.341737 | 7_4:+11549743 | Msa1140160:intron |
| TACATTCCATTGATGGCATT+TGG | 0.342285 | 7_4:+11549841 | Msa1140160:CDS |
| CTATGTCAAGAACAAGTTAA+AGG | 0.347261 | 7_4:+11549604 | Msa1140160:CDS |
| AATGCATTCCCAAACACATT+AGG | 0.355561 | 7_4:-11548742 | None:intergenic |
| TAACAATGTCAGGCCACAAC+TGG | 0.356484 | 7_4:+11548678 | Msa1140160:CDS |
| CTATAGTACATTGTAAATAC+TGG | 0.393292 | 7_4:-11552569 | None:intergenic |
| TGGACTCATTCGAGGAGGAT+TGG | 0.397681 | 7_4:+11548780 | Msa1140160:CDS |
| GGCATTTCACTTGGTCTTCG+TGG | 0.398166 | 7_4:+11549883 | Msa1140160:CDS |
| TGCTTACCCGGTGCAGGAAC+GGG | 0.406546 | 7_4:-11549637 | None:intergenic |
| GGACTCATTCGAGGAGGATT+GGG | 0.409440 | 7_4:+11548781 | Msa1140160:CDS |
| CAAAACGGTGCGGATTTAGA+AGG | 0.410344 | 7_4:+11547727 | Msa1140160:five_prime_UTR |
| TTCCCATTGTTCATGTGGCT+TGG | 0.411357 | 7_4:+11552514 | Msa1140160:CDS |
| CGAGGAGGATTGGGTGCATA+TGG | 0.414855 | 7_4:+11548790 | Msa1140160:CDS |
| AAAGTGACATTGCTTTCATT+AGG | 0.416985 | 7_4:+11552250 | Msa1140160:CDS |
| TGACCTGTACATTCCATTGA+TGG | 0.418395 | 7_4:+11549834 | Msa1140160:CDS |
| TTAGTCCTGAAGCATTAAAC+TGG | 0.419593 | 7_4:+11552179 | Msa1140160:CDS |
| GTGCTTGCTGGCATTTCACT+TGG | 0.423642 | 7_4:+11549874 | Msa1140160:CDS |
| ATTAAACTGGTTATTCATCA+AGG | 0.432372 | 7_4:+11552192 | Msa1140160:CDS |
| TTGGAAACATCACTGTCAAT+TGG | 0.440429 | 7_4:+11552533 | Msa1140160:CDS |
| CTCAGTTCCCATTGTTCATG+TGG | 0.444522 | 7_4:+11552509 | Msa1140160:CDS |
| TAAAAGCAAGGGAGAGAGAG+AGG | 0.455055 | 7_4:-11552655 | None:intergenic |
| TTGGACATTGTAGCATATGC+AGG | 0.461681 | 7_4:+11552292 | Msa1140160:CDS |
| GCTCACAACCTAATGTGTTT+GGG | 0.467004 | 7_4:+11548734 | Msa1140160:CDS |
| TCCTCGAATGAGTCCAGAAC+CGG | 0.468153 | 7_4:-11548773 | None:intergenic |
| ACATTAGGTTGTGAGCTTGT+TGG | 0.468307 | 7_4:-11548727 | None:intergenic |
| TGAGAATGTATAACAATGTC+AGG | 0.471616 | 7_4:+11548668 | Msa1140160:exon |
| CAATGAAGAGCAAGAGATAG+TGG | 0.472019 | 7_4:-11552480 | None:intergenic |
| AAGTGGAGAAGCACCACTAT+TGG | 0.474140 | 7_4:+11552273 | Msa1140160:CDS |
| TTATAGAGAAATAATTTACA+AGG | 0.479962 | 7_4:-11547637 | None:intergenic |
| ATCAATGGAATGTACAGGTC+AGG | 0.483410 | 7_4:-11549832 | None:intergenic |
| TTTGTTCCCGTTCCTGCACC+GGG | 0.484466 | 7_4:+11549631 | Msa1140160:CDS |
| GCCGGTTCTGGACTCATTCG+AGG | 0.485329 | 7_4:+11548772 | Msa1140160:CDS |
| CTGCTTACCCGGTGCAGGAA+CGG | 0.485701 | 7_4:-11549638 | None:intergenic |
| TTGAAGGCCATACTGAAAGA+AGG | 0.488181 | 7_4:-11552737 | None:intergenic |
| TGGAAGTTGAGGCTGAAATT+GGG | 0.489055 | 7_4:-11548707 | None:intergenic |
| TAGGTACCAAATGCCATCAA+TGG | 0.490484 | 7_4:-11549847 | None:intergenic |
| TTCCAAGCCACATGAACAAT+GGG | 0.491751 | 7_4:-11552516 | None:intergenic |
| AAAAGAGCCAAATTTATTGA+AGG | 0.500094 | 7_4:-11552753 | None:intergenic |
| CCATGGCATCAAAACGTAGT+AGG | 0.501741 | 7_4:-11552371 | None:intergenic |
| GGGAATGCATTTAATGCTGC+CGG | 0.513526 | 7_4:+11548754 | Msa1140160:CDS |
| CTGGTTATTCATCAAGGGAA+TGG | 0.515001 | 7_4:+11552198 | Msa1140160:CDS |
| ACATTGCTTTCATTAGGAAG+TGG | 0.517128 | 7_4:+11552256 | Msa1140160:CDS |
| TGTGAGCTTGTTGGAAGTTG+AGG | 0.518984 | 7_4:-11548718 | None:intergenic |
| TCATCAAGGGAATGGTTGGT+TGG | 0.519640 | 7_4:+11552206 | Msa1140160:CDS |
| TTAACTTGTTCTTGACATAG+TGG | 0.522980 | 7_4:-11549601 | None:intergenic |
| TTATTCATCAAGGGAATGGT+TGG | 0.526967 | 7_4:+11552202 | Msa1140160:CDS |
| TGACATAGTGGTCATTCACT+TGG | 0.532391 | 7_4:-11549589 | None:intergenic |
| AACAATGTCAGGCCACAACT+GGG | 0.538188 | 7_4:+11548679 | Msa1140160:CDS |
| CATTACTGCTTACCCGGTGC+AGG | 0.538370 | 7_4:-11549643 | None:intergenic |
| GGCTCATAATTACATAGCTA+TGG | 0.538530 | 7_4:-11552689 | None:intergenic |
| ATGCCATCAATGGAATGTAC+AGG | 0.551498 | 7_4:-11549837 | None:intergenic |
| TATAGAGAAATAATTTACAA+GGG | 0.555172 | 7_4:-11547636 | None:intergenic |
| TTAAACTGGTTATTCATCAA+GGG | 0.556823 | 7_4:+11552193 | Msa1140160:CDS |
| AGAAGAAGAAAACATCAAAA+CGG | 0.557549 | 7_4:+11547712 | Msa1140160:five_prime_UTR |
| TTTCCAAGCCACATGAACAA+TGG | 0.572969 | 7_4:-11552517 | None:intergenic |
| TAAGAGAGTCTACCTCCCAC+TGG | 0.572982 | 7_4:-11549781 | None:intergenic |
| GCATTTATGTCGTAAATTGG+AGG | 0.584087 | 7_4:-11549808 | None:intergenic |
| TATGCTACAATGTCCAATAG+TGG | 0.586254 | 7_4:-11552286 | None:intergenic |
| GTATCCATTAAATAAAAGCA+AGG | 0.587866 | 7_4:-11552667 | None:intergenic |
| CAATGTCAGGCCACAACTGG+GGG | 0.592342 | 7_4:+11548681 | Msa1140160:CDS |
| TTGCATTGCACACTTCACTC+AGG | 0.593274 | 7_4:+11547755 | Msa1140160:five_prime_UTR |
| ACAGACATATCAGCATGGAT+AGG | 0.596075 | 7_4:-11550037 | None:intergenic |
| GACTAGAATCACTGAACCAG+TGG | 0.600152 | 7_4:+11549765 | Msa1140160:CDS |
| GCCATGCATAAGCAGAACCA+TGG | 0.608918 | 7_4:-11552388 | None:intergenic |
| AATGCCAGCAAGCACAACAT+AGG | 0.611720 | 7_4:-11549866 | None:intergenic |
| TTCACTTGGAAGTAATATTG+GGG | 0.618593 | 7_4:-11549575 | None:intergenic |
| CGAGTCATAACTCCTGACTT+CGG | 0.621337 | 7_4:-11552449 | None:intergenic |
| AGTTTGGAGAATTTATCGCA+TGG | 0.628217 | 7_4:-11549992 | None:intergenic |
| TATCCATTAAATAAAAGCAA+GGG | 0.629875 | 7_4:-11552666 | None:intergenic |
| GGAAGTTGAGGCTGAAATTG+GGG | 0.632982 | 7_4:-11548706 | None:intergenic |
| GCCATGGTTCTGCTTATGCA+TGG | 0.637020 | 7_4:+11552387 | Msa1140160:CDS |
| TGGACATTGTAGCATATGCA+GGG | 0.640725 | 7_4:+11552293 | Msa1140160:CDS |
| ACAATGTCAGGCCACAACTG+GGG | 0.647290 | 7_4:+11548680 | Msa1140160:CDS |
| GGTTCTGGACTCATTCGAGG+AGG | 0.682009 | 7_4:+11548775 | Msa1140160:CDS |
| ACTAGAATCACTGAACCAGT+GGG | 0.692133 | 7_4:+11549766 | Msa1140160:CDS |
| CAATAACAGACATATCAGCA+TGG | 0.693473 | 7_4:-11550042 | None:intergenic |
| AGAATCACTGAACCAGTGGG+AGG | 0.714128 | 7_4:+11549769 | Msa1140160:CDS |
| AAGAAAACATCAAAACGGTG+CGG | 0.720437 | 7_4:+11547717 | Msa1140160:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTAATATTAATTTA+AGG | + | chr7_4:11547929-11547948 | Msa1140160:intron | 0.0% |
| !!! | TTTTTTTATTTTTTCTTTTG+AGG | + | chr7_4:11547520-11547539 | Msa1140160:five_prime_UTR | 10.0% |
| !! | TTAAGGAATAAAAAATATTT+AGG | + | chr7_4:11547571-11547590 | Msa1140160:five_prime_UTR | 10.0% |
| !! | TAAGGAATAAAAAATATTTA+GGG | + | chr7_4:11547572-11547591 | Msa1140160:five_prime_UTR | 10.0% |
| !!! | TTGAAATTTTTTTTTTTGTA+TGG | + | chr7_4:11548940-11548959 | Msa1140160:intron | 10.0% |
| !! | TAGAATAAAGAATATTAATT+AGG | + | chr7_4:11550702-11550721 | Msa1140160:intron | 10.0% |
| !! | ATAAAATAAACTTCAAATTA+TGG | - | chr7_4:11550948-11550967 | None:intergenic | 10.0% |
| !! | AAATATATACAAAATTTCAT+AGG | - | chr7_4:11551534-11551553 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAAAAACTGTT+TGG | - | chr7_4:11551606-11551625 | None:intergenic | 10.0% |
| !! | AATATTTATTAGGATTAATT+TGG | + | chr7_4:11551846-11551865 | Msa1140160:intron | 10.0% |
| !! | ATATTTATTAGGATTAATTT+GGG | + | chr7_4:11551847-11551866 | Msa1140160:intron | 10.0% |
| !!! | TTTAACTTAGTAATATTTTT+TGG | + | chr7_4:11552592-11552611 | Msa1140160:three_prime_UTR | 10.0% |
| !! | AAGGAATAAAAAATATTTAG+GGG | + | chr7_4:11547573-11547592 | Msa1140160:five_prime_UTR | 15.0% |
| !! | TATAGAGAAATAATTTACAA+GGG | - | chr7_4:11547639-11547658 | None:intergenic | 15.0% |
| !! | TTATAGAGAAATAATTTACA+AGG | - | chr7_4:11547640-11547659 | None:intergenic | 15.0% |
| !! | TATTAATTTAAGGAGTTTAA+TGG | + | chr7_4:11547939-11547958 | Msa1140160:intron | 15.0% |
| !! | ATTAATTTAAGGAGTTTAAT+GGG | + | chr7_4:11547940-11547959 | Msa1140160:intron | 15.0% |
| !! | TATATATACTTCTGATTATA+TGG | + | chr7_4:11548548-11548567 | Msa1140160:intron | 15.0% |
| !!! | TTTTAAATCTATTTCATACA+CGG | + | chr7_4:11549154-11549173 | Msa1140160:intron | 15.0% |
| !! | ATAAACAAAAACAAAGAAAA+AGG | - | chr7_4:11550414-11550433 | None:intergenic | 15.0% |
| !!! | TCTTTGTTTTTGTTTATAAT+TGG | + | chr7_4:11550417-11550436 | Msa1140160:intron | 15.0% |
| !!! | TCACAAGAAAAATATAATTT+TGG | - | chr7_4:11550446-11550465 | None:intergenic | 15.0% |
| !! | AATATTAATTAGGATTAATC+AGG | + | chr7_4:11550712-11550731 | Msa1140160:intron | 15.0% |
| !! | ATATTAATTAGGATTAATCA+GGG | + | chr7_4:11550713-11550732 | Msa1140160:intron | 15.0% |
| !! | TATAAACAAAAACAAGAAAA+AGG | - | chr7_4:11551143-11551162 | None:intergenic | 15.0% |
| !!! | TCACAAGAAAAATATAATTT+TGG | - | chr7_4:11550446-11550465 | None:intergenic | 15.0% |
| !! | TAGGATAAAGAATATTTATT+AGG | + | chr7_4:11551836-11551855 | Msa1140160:intron | 15.0% |
| !! | ATAAATAGAATAAATAAGGA+TGG | + | chr7_4:11551892-11551911 | Msa1140160:intron | 15.0% |
| !! | AAAAAAAAATCTATGTGAAA+AGG | - | chr7_4:11552713-11552732 | None:intergenic | 15.0% |
| !! | TTAATTTAAGGAGTTTAATG+GGG | + | chr7_4:11547941-11547960 | Msa1140160:intron | 20.0% |
| !! | GTAAAATAAATTTACACTGA+CGG | - | chr7_4:11547972-11547991 | None:intergenic | 20.0% |
| !! | AATGATTGAATGTGATTATA+TGG | + | chr7_4:11548153-11548172 | Msa1140160:intron | 20.0% |
| !! | ATGATTGAATGTGATTATAT+GGG | + | chr7_4:11548154-11548173 | Msa1140160:intron | 20.0% |
| !! | AATCTAAAGGGAAAAAAAAA+TGG | - | chr7_4:11548589-11548608 | None:intergenic | 20.0% |
| !! | AATAAAATTCCTAGAGATAT+GGG | - | chr7_4:11549032-11549051 | None:intergenic | 20.0% |
| !! | TAATAAAATTCCTAGAGATA+TGG | - | chr7_4:11549033-11549052 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTGCAAAACTAAA+TGG | - | chr7_4:11549113-11549132 | None:intergenic | 20.0% |
| !! | AATGCCTAAATATATGATAT+TGG | + | chr7_4:11549196-11549215 | Msa1140160:intron | 20.0% |
| !! | TCTACCAATATCATATATTT+AGG | - | chr7_4:11549203-11549222 | None:intergenic | 20.0% |
| !!! | ATTTTTGCATTCTAATGTTT+AGG | + | chr7_4:11549735-11549754 | Msa1140160:intron | 20.0% |
| !!! | TTTTTGCATTCTAATGTTTA+GGG | + | chr7_4:11549736-11549755 | Msa1140160:intron | 20.0% |
| !! | TAGGAAATTTATTCATGTTA+TGG | - | chr7_4:11550021-11550040 | None:intergenic | 20.0% |
| !! | TTTGATTAGTACAATTGTAA+AGG | + | chr7_4:11550156-11550175 | Msa1140160:intron | 20.0% |
| !!! | TTATAAGTTAGTTTGTGAAA+AGG | + | chr7_4:11550508-11550527 | Msa1140160:intron | 20.0% |
| !! | TCAAGTATACATATATATAC+TGG | - | chr7_4:11551118-11551137 | None:intergenic | 20.0% |
| !! | AATTTAACATTTACATTCCT+GGG | + | chr7_4:11551356-11551375 | Msa1140160:intron | 20.0% |
| !! | TTAAATATTCCAAGGAAAAT+TGG | - | chr7_4:11551576-11551595 | None:intergenic | 20.0% |
| !!! | AGTTTTTAAAAAAAATACCC+AGG | + | chr7_4:11551609-11551628 | Msa1140160:intron | 20.0% |
| !! | AACTTATAAAAAAACAGCTA+TGG | - | chr7_4:11551790-11551809 | None:intergenic | 20.0% |
| !! | GGGTATAAATAGAATAAATA+AGG | + | chr7_4:11551888-11551907 | Msa1140160:intron | 20.0% |
| !! | GTAAAATGAAAAATCTATTG+TGG | + | chr7_4:11551947-11551966 | Msa1140160:intron | 20.0% |
| !!! | TTTTATTGAATGAATGATTG+AGG | - | chr7_4:11551991-11552010 | None:intergenic | 20.0% |
| !! | ATAAGAAACTACAATAAACT+AGG | - | chr7_4:11552133-11552152 | None:intergenic | 20.0% |
| !!! | TATTTTTTGGTTGTCAATTT+TGG | + | chr7_4:11552605-11552624 | Msa1140160:three_prime_UTR | 20.0% |
| !! | TATCCATTAAATAAAAGCAA+GGG | - | chr7_4:11552669-11552688 | None:intergenic | 20.0% |
| !!! | CTTTTGAGGAAATAACAAAT+AGG | + | chr7_4:11547534-11547553 | Msa1140160:five_prime_UTR | 25.0% |
| ! | AGGTTTAATTGCAAAGTTTA+AGG | + | chr7_4:11547554-11547573 | Msa1140160:five_prime_UTR | 25.0% |
| !! | ACACGTGTATATGATTTTAT+TGG | + | chr7_4:11547596-11547615 | Msa1140160:five_prime_UTR | 25.0% |
| ! | AGAAGAAGAAAACATCAAAA+CGG | + | chr7_4:11547712-11547731 | Msa1140160:five_prime_UTR | 25.0% |
| ! | AAACATTATAAATTAGGCGT+AGG | - | chr7_4:11548028-11548047 | None:intergenic | 25.0% |
| ! | ACTGTCTAAAAATAAATTCG+AGG | - | chr7_4:11548389-11548408 | None:intergenic | 25.0% |
| ! | ATATACTTCTGATTATATGG+TGG | + | chr7_4:11548551-11548570 | Msa1140160:intron | 25.0% |
| ! | GGCTATAGATATAATCTAAA+GGG | - | chr7_4:11548601-11548620 | None:intergenic | 25.0% |
| ! | AGGCTATAGATATAATCTAA+AGG | - | chr7_4:11548602-11548621 | None:intergenic | 25.0% |
| !!! | AATCAGAAACAACTTTTTCA+AGG | - | chr7_4:11548622-11548641 | None:intergenic | 25.0% |
| !!! | TTGAAAAAGTTGTTTCTGAT+TGG | + | chr7_4:11548621-11548640 | Msa1140160:intron | 25.0% |
| !!! | TTGTTTCTGATTGGTTATTT+TGG | + | chr7_4:11548630-11548649 | Msa1140160:intron | 25.0% |
| ! | ATCTAATATTATCAACCATG+AGG | - | chr7_4:11548912-11548931 | None:intergenic | 25.0% |
| !! | ATTTTCAACAACAGATAACT+AGG | + | chr7_4:11549540-11549559 | Msa1140160:intron | 25.0% |
| ! | ATTCACTTGGAAGTAATATT+GGG | - | chr7_4:11549579-11549598 | None:intergenic | 25.0% |
| ! | ATTGTACTAATCAAAGACTT+CGG | - | chr7_4:11550151-11550170 | None:intergenic | 25.0% |
| !!! | AATTTCAAAGTATTGCATTG+TGG | - | chr7_4:11550203-11550222 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTTATTGCACA+AGG | - | chr7_4:11550311-11550330 | None:intergenic | 25.0% |
| ! | ACTAAATTCTTAGTGTAACT+TGG | - | chr7_4:11550672-11550691 | None:intergenic | 25.0% |
| ! | GTTACACTAAGAATTTAGTT+TGG | + | chr7_4:11550673-11550692 | Msa1140160:intron | 25.0% |
| ! | GTAAATAGAATACATAAGGA+TGG | + | chr7_4:11550758-11550777 | Msa1140160:intron | 25.0% |
| ! | TGAAAGTTGTATGTAAAATG+AGG | + | chr7_4:11550801-11550820 | Msa1140160:intron | 25.0% |
| !!! | TTGGATTAGTACAATTGTAA+AGG | + | chr7_4:11550893-11550912 | Msa1140160:intron | 25.0% |
| !!! | TAGTTCTGAGTAATATTAGT+GGG | - | chr7_4:11551313-11551332 | None:intergenic | 25.0% |
| !!! | ATAGTTCTGAGTAATATTAG+TGG | - | chr7_4:11551314-11551333 | None:intergenic | 25.0% |
| ! | TTACTCAGAACTATTTACTA+AGG | + | chr7_4:11551320-11551339 | Msa1140160:intron | 25.0% |
| ! | CAATTTAACATTTACATTCC+TGG | + | chr7_4:11551355-11551374 | Msa1140160:intron | 25.0% |
| ! | ATTGAGTAATCATTATTCCT+GGG | + | chr7_4:11551421-11551440 | Msa1140160:intron | 25.0% |
| ! | TAACTTGGGAATAATTTCAT+GGG | - | chr7_4:11551492-11551511 | None:intergenic | 25.0% |
| !! | TTAACTTGGGAATAATTTCA+TGG | - | chr7_4:11551493-11551512 | None:intergenic | 25.0% |
| ! | TGAAATTATTCCCAAGTTAA+AGG | + | chr7_4:11551493-11551512 | Msa1140160:intron | 25.0% |
| !! | AAATAACTTCCAATTTTCCT+TGG | + | chr7_4:11551564-11551583 | Msa1140160:intron | 25.0% |
| ! | ACAAAACCAAACTAAATTCT+TGG | - | chr7_4:11550682-11550701 | None:intergenic | 25.0% |
| !!! | GAATTTAGTTTGGTTTTGTT+AGG | + | chr7_4:11550683-11550702 | Msa1140160:intron | 25.0% |
| ! | ATTAAACTGGTTATTCATCA+AGG | + | chr7_4:11552192-11552211 | Msa1140160:CDS | 25.0% |
| ! | TTAAACTGGTTATTCATCAA+GGG | + | chr7_4:11552193-11552212 | Msa1140160:CDS | 25.0% |
| ! | GTTCTTGGAAAAATAATTTC+TGG | + | chr7_4:11552343-11552362 | Msa1140160:CDS | 25.0% |
| ! | CTATAGTACATTGTAAATAC+TGG | - | chr7_4:11552572-11552591 | None:intergenic | 25.0% |
| ! | GTATCCATTAAATAAAAGCA+AGG | - | chr7_4:11552670-11552689 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTTCTTTCAGTA+TGG | + | chr7_4:11552730-11552749 | Msa1140160:three_prime_UTR | 25.0% |
| ! | AAAAGAGCCAAATTTATTGA+AGG | - | chr7_4:11552756-11552775 | None:intergenic | 25.0% |
| !! | ATCACGTTGTTTTGCAAAAA+GGG | + | chr7_4:11547822-11547841 | Msa1140160:intron | 30.0% |
| TTGCTGAAAATTTACGATCT+TGG | + | chr7_4:11547846-11547865 | Msa1140160:intron | 30.0% | |
| ! | TAGTCTTTAGTTTACTTCGT+AGG | + | chr7_4:11547894-11547913 | Msa1140160:intron | 30.0% |
| ! | ATTTTACAACGACATCCAAT+AGG | + | chr7_4:11547985-11548004 | Msa1140160:intron | 30.0% |
| ! | GCAATATAGTGTTTTCCTAT+TGG | - | chr7_4:11548003-11548022 | None:intergenic | 30.0% |
| ACCAATTACTACATTCTCAT+TGG | + | chr7_4:11548063-11548082 | Msa1140160:intron | 30.0% | |
| TCCAATGAGAATGTAGTAAT+TGG | - | chr7_4:11548067-11548086 | None:intergenic | 30.0% | |
| TTGAATGTGATTATATGGGT+TGG | + | chr7_4:11548158-11548177 | Msa1140160:intron | 30.0% | |
| !! | CTTTTCTGCTAGTAGTTTTA+TGG | - | chr7_4:11548458-11548477 | None:intergenic | 30.0% |
| TAAAGGGAAAAAAAAATGGC+AGG | - | chr7_4:11548585-11548604 | None:intergenic | 30.0% | |
| !!! | CTGATTGGTTATTTTGGTTT+TGG | + | chr7_4:11548636-11548655 | Msa1140160:intron | 30.0% |
| TGAGAATGTATAACAATGTC+AGG | + | chr7_4:11548668-11548687 | Msa1140160:exon | 30.0% | |
| GCATATGGCGAAAAAATATT+CGG | + | chr7_4:11548805-11548824 | Msa1140160:CDS | 30.0% | |
| TAGTTTAACATAATGCCTCA+TGG | + | chr7_4:11548894-11548913 | Msa1140160:intron | 30.0% | |
| !! | CAACTTGGCATTTTAATATC+CGG | + | chr7_4:11549083-11549102 | Msa1140160:intron | 30.0% |
| TATATGATATTGGTAGAGTC+AGG | + | chr7_4:11549206-11549225 | Msa1140160:intron | 30.0% | |
| GAAATCATTCATAGTTGCAT+TGG | - | chr7_4:11549256-11549275 | None:intergenic | 30.0% | |
| TTGACAACATGGAACTATAA+TGG | - | chr7_4:11549306-11549325 | None:intergenic | 30.0% | |
| AGTTCCATGTTGTCAAATAT+CGG | + | chr7_4:11549310-11549329 | Msa1140160:intron | 30.0% | |
| ! | ATCTATAACAGTGTTGTTGA+TGG | - | chr7_4:11549474-11549493 | None:intergenic | 30.0% |
| TCATTTGTATGTGTGAATCA+AGG | + | chr7_4:11549495-11549514 | Msa1140160:intron | 30.0% | |
| TTCACTTGGAAGTAATATTG+GGG | - | chr7_4:11549578-11549597 | None:intergenic | 30.0% | |
| CATTCACTTGGAAGTAATAT+TGG | - | chr7_4:11549580-11549599 | None:intergenic | 30.0% | |
| !! | TTAACTTGTTCTTGACATAG+TGG | - | chr7_4:11549604-11549623 | None:intergenic | 30.0% |
| CTATGTCAAGAACAAGTTAA+AGG | + | chr7_4:11549604-11549623 | Msa1140160:CDS | 30.0% | |
| ! | ATTCTAATGTTTAGGGTCAT+TGG | + | chr7_4:11549743-11549762 | Msa1140160:intron | 30.0% |
| !! | ATTCATGTTATGGACTAGTT+TGG | - | chr7_4:11550011-11550030 | None:intergenic | 30.0% |
| TTGTACTAATCAAAGACTTC+GGG | - | chr7_4:11550150-11550169 | None:intergenic | 30.0% | |
| CACACTGGACAAAAAAAAAA+GGG | - | chr7_4:11550374-11550393 | None:intergenic | 30.0% | |
| ACACACTGGACAAAAAAAAA+AGG | - | chr7_4:11550375-11550394 | None:intergenic | 30.0% | |
| TCAACTATCTATATACACAC+TGG | - | chr7_4:11550389-11550408 | None:intergenic | 30.0% | |
| !! | ACATCAGAGACTTATTTTTC+CGG | - | chr7_4:11550597-11550616 | None:intergenic | 30.0% |
| !! | AGGGTAGTTGTTTTGTTATA+AGG | + | chr7_4:11550732-11550751 | Msa1140160:intron | 30.0% |
| !! | GGGTAGTTGTTTTGTTATAA+GGG | + | chr7_4:11550733-11550752 | Msa1140160:intron | 30.0% |
| !! | GGTAGTTGTTTTGTTATAAG+GGG | + | chr7_4:11550734-11550753 | Msa1140160:intron | 30.0% |
| GGGTGTAAATAGAATACATA+AGG | + | chr7_4:11550754-11550773 | Msa1140160:intron | 30.0% | |
| ACATTTCTTTATCCTAACAG+TGG | - | chr7_4:11550830-11550849 | None:intergenic | 30.0% | |
| CAATTGTAAAGGACTATATG+TGG | + | chr7_4:11550904-11550923 | Msa1140160:intron | 30.0% | |
| AACTTCAAATTATGGCATTG+AGG | - | chr7_4:11550940-11550959 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTGTGATGAAGAGT+TGG | + | chr7_4:11550967-11550986 | Msa1140160:intron | 30.0% |
| ATATACTGGACAAGAACAAT+TGG | - | chr7_4:11551104-11551123 | None:intergenic | 30.0% | |
| !! | AGTTCTGAGTAATATTAGTG+GGG | - | chr7_4:11551312-11551331 | None:intergenic | 30.0% |
| GATTGAGTAATCATTATTCC+TGG | + | chr7_4:11551420-11551439 | Msa1140160:intron | 30.0% | |
| GAATAATTTCATGGGAATGT+TGG | - | chr7_4:11551484-11551503 | None:intergenic | 30.0% | |
| ATTCTTAGAAACAACATACC+CGG | - | chr7_4:11551659-11551678 | None:intergenic | 30.0% | |
| ! | ATGTTAGAGTGTTTGTTTCA+CGG | - | chr7_4:11551693-11551712 | None:intergenic | 30.0% |
| GTTACACCAAGAATTTAGTT+TGG | + | chr7_4:11551807-11551826 | Msa1140160:intron | 30.0% | |
| !! | TTAGGATTAATTTGGGTTGT+TGG | + | chr7_4:11551854-11551873 | Msa1140160:intron | 30.0% |
| ATTGAATGAATGATTGAGGT+AGG | - | chr7_4:11551987-11552006 | None:intergenic | 30.0% | |
| TCGGAAAGAAAAAAAGAAGA+AGG | - | chr7_4:11552014-11552033 | None:intergenic | 30.0% | |
| AGAAAACTGGTAGAAAGAAT+CGG | - | chr7_4:11552033-11552052 | None:intergenic | 30.0% | |
| GAGTAATTGAAACAGAAAAC+TGG | - | chr7_4:11552046-11552065 | None:intergenic | 30.0% | |
| ! | GTTTTCTGTTTCAATTACTC+CGG | + | chr7_4:11552046-11552065 | Msa1140160:intron | 30.0% |
| ! | TTTTCTGTTTCAATTACTCC+GGG | + | chr7_4:11552047-11552066 | Msa1140160:intron | 30.0% |
| GAAACTACAATAAACTAGGT+GGG | - | chr7_4:11552129-11552148 | None:intergenic | 30.0% | |
| AGAAACTACAATAAACTAGG+TGG | - | chr7_4:11552130-11552149 | None:intergenic | 30.0% | |
| AATAACCAGTTTAATGCTTC+AGG | - | chr7_4:11552187-11552206 | None:intergenic | 30.0% | |
| AAAGTGACATTGCTTTCATT+AGG | + | chr7_4:11552250-11552269 | Msa1140160:CDS | 30.0% | |
| !! | TCTCCCTTGCTTTTATTTAA+TGG | + | chr7_4:11552663-11552682 | Msa1140160:three_prime_UTR | 30.0% |
| AGTATGGCCTTCAATAAATT+TGG | + | chr7_4:11552746-11552765 | Msa1140160:three_prime_UTR | 30.0% | |
| AAGAAAACATCAAAACGGTG+CGG | + | chr7_4:11547717-11547736 | Msa1140160:five_prime_UTR | 35.0% | |
| ! | AGGTTTTTCTCTCTTCTCTT+AGG | + | chr7_4:11547779-11547798 | Msa1140160:intron | 35.0% |
| !! | CATCACGTTGTTTTGCAAAA+AGG | + | chr7_4:11547821-11547840 | Msa1140160:intron | 35.0% |
| !! | TCACGTTGTTTTGCAAAAAG+GGG | + | chr7_4:11547823-11547842 | Msa1140160:intron | 35.0% |
| ! | TTCAGTGTCGAATTGATCTT+TGG | + | chr7_4:11548312-11548331 | Msa1140160:intron | 35.0% |
| ! | TTGCAATTTCGGTGCATTTA+TGG | + | chr7_4:11548499-11548518 | Msa1140160:intron | 35.0% |
| ! | CAGAAGTATATATAGCACCA+GGG | - | chr7_4:11548542-11548561 | None:intergenic | 35.0% |
| ! | TCAGAAGTATATATAGCACC+AGG | - | chr7_4:11548543-11548562 | None:intergenic | 35.0% |
| !!! | GGTTATTTTGGTTTTGGACA+TGG | + | chr7_4:11548642-11548661 | Msa1140160:intron | 35.0% |
| AATGCATTCCCAAACACATT+AGG | - | chr7_4:11548745-11548764 | None:intergenic | 35.0% | |
| CATTGTGTTCAAATTGTGTG+TGG | + | chr7_4:11548983-11549002 | Msa1140160:intron | 35.0% | |
| AACTAATGTAGTGCACAACT+TGG | + | chr7_4:11549068-11549087 | Msa1140160:intron | 35.0% | |
| TGCAAAACTAAATGGAACTC+CGG | - | chr7_4:11549105-11549124 | None:intergenic | 35.0% | |
| ! | GTTTTTCCTTCCCAAATTGA+TGG | - | chr7_4:11549234-11549253 | None:intergenic | 35.0% |
| GCATTTATGTCGTAAATTGG+AGG | - | chr7_4:11549811-11549830 | None:intergenic | 35.0% | |
| ! | GGAGCATTTATGTCGTAAAT+TGG | - | chr7_4:11549814-11549833 | None:intergenic | 35.0% |
| ! | TACATTCCATTGATGGCATT+TGG | + | chr7_4:11549841-11549860 | Msa1140160:CDS | 35.0% |
| AGTTTGGAGAATTTATCGCA+TGG | - | chr7_4:11549995-11550014 | None:intergenic | 35.0% | |
| CAATAACAGACATATCAGCA+TGG | - | chr7_4:11550045-11550064 | None:intergenic | 35.0% | |
| TAGCCTTTGCAAAAGTGATT+TGG | + | chr7_4:11550075-11550094 | Msa1140160:CDS | 35.0% | |
| !! | TCTCCAAATCACTTTTGCAA+AGG | - | chr7_4:11550081-11550100 | None:intergenic | 35.0% |
| TTTGTTCTGTGATGAAGAGT+CGG | + | chr7_4:11550230-11550249 | Msa1140160:intron | 35.0% | |
| TTGTGAAAGTTTCTTCTGTC+TGG | + | chr7_4:11550262-11550281 | Msa1140160:intron | 35.0% | |
| TTTGAGAGATCAGATGTTGT+GGG | + | chr7_4:11550540-11550559 | Msa1140160:intron | 35.0% | |
| ACTTGGCAAAAAAACAGCTA+CGG | - | chr7_4:11550655-11550674 | None:intergenic | 35.0% | |
| AAAATGAGGAATCCACTGTT+AGG | + | chr7_4:11550815-11550834 | Msa1140160:intron | 35.0% | |
| TTGTACTAATCCAAGACTCT+GGG | - | chr7_4:11550887-11550906 | None:intergenic | 35.0% | |
| ATTGTACTAATCCAAGACTC+TGG | - | chr7_4:11550888-11550907 | None:intergenic | 35.0% | |
| TTGTGAAAGTTTCTTGTGTC+TGG | + | chr7_4:11550999-11551018 | Msa1140160:intron | 35.0% | |
| ! | ATGTTATGTGAGTGATAACG+TGG | + | chr7_4:11551229-11551248 | Msa1140160:intron | 35.0% |
| ! | TGATAACGTGGTTTGTGAAA+AGG | + | chr7_4:11551241-11551260 | Msa1140160:intron | 35.0% |
| TTTACATTCCTGGGAATACA+TGG | + | chr7_4:11551365-11551384 | Msa1140160:intron | 35.0% | |
| TTACATTCCTGGGAATACAT+GGG | + | chr7_4:11551366-11551385 | Msa1140160:intron | 35.0% | |
| CTCAATCTTGCAACAAACAT+GGG | - | chr7_4:11551407-11551426 | None:intergenic | 35.0% | |
| ACTCAATCTTGCAACAAACA+TGG | - | chr7_4:11551408-11551427 | None:intergenic | 35.0% | |
| ! | TGCAAAGTTATTTCATTCCC+AGG | - | chr7_4:11551455-11551474 | None:intergenic | 35.0% |
| GCACACTCTTAAATATTCCA+AGG | - | chr7_4:11551584-11551603 | None:intergenic | 35.0% | |
| TTCTTAGAAACAACATACCC+GGG | - | chr7_4:11551658-11551677 | None:intergenic | 35.0% | |
| CAAACTTAACACTAGAAACC+TGG | - | chr7_4:11552079-11552098 | None:intergenic | 35.0% | |
| !! | CAGGTTTCTAGTGTTAAGTT+TGG | + | chr7_4:11552077-11552096 | Msa1140160:intron | 35.0% |
| !! | ATACTGTATTTGTTTCTGCC+AGG | + | chr7_4:11552155-11552174 | Msa1140160:intron | 35.0% |
| ! | TTAGTCCTGAAGCATTAAAC+TGG | + | chr7_4:11552179-11552198 | Msa1140160:CDS | 35.0% |
| TTATTCATCAAGGGAATGGT+TGG | + | chr7_4:11552202-11552221 | Msa1140160:CDS | 35.0% | |
| ACATTGCTTTCATTAGGAAG+TGG | + | chr7_4:11552256-11552275 | Msa1140160:CDS | 35.0% | |
| TATGCTACAATGTCCAATAG+TGG | - | chr7_4:11552289-11552308 | None:intergenic | 35.0% | |
| ! | ATATGCAGGGTATACTTTTG+CGG | + | chr7_4:11552306-11552325 | Msa1140160:CDS | 35.0% |
| TTGGAAACATCACTGTCAAT+TGG | + | chr7_4:11552533-11552552 | Msa1140160:CDS | 35.0% | |
| GGCTCATAATTACATAGCTA+TGG | - | chr7_4:11552692-11552711 | None:intergenic | 35.0% | |
| !!! | ATTTTATTGGCTTGCTTGCG+TGG | + | chr7_4:11547609-11547628 | Msa1140160:five_prime_UTR | 40.0% |
| ACTACATTCTCATTGGACGT+CGG | + | chr7_4:11548070-11548089 | Msa1140160:intron | 40.0% | |
| !! | TCATAGACACTTCAGGTTGA+AGG | - | chr7_4:11548205-11548224 | None:intergenic | 40.0% |
| CTGTGTATCATAGACACTTC+AGG | - | chr7_4:11548212-11548231 | None:intergenic | 40.0% | |
| ! | GAAGTGTCTATGATACACAG+TGG | + | chr7_4:11548212-11548231 | Msa1140160:intron | 40.0% |
| ACTGTCCGTGTTTGCAATTT+CGG | + | chr7_4:11548488-11548507 | Msa1140160:intron | 40.0% | |
| ATGCACCGAAATTGCAAACA+CGG | - | chr7_4:11548496-11548515 | None:intergenic | 40.0% | |
| TGGAAGTTGAGGCTGAAATT+GGG | - | chr7_4:11548710-11548729 | None:intergenic | 40.0% | |
| TTGGAAGTTGAGGCTGAAAT+TGG | - | chr7_4:11548711-11548730 | None:intergenic | 40.0% | |
| ! | ACATTAGGTTGTGAGCTTGT+TGG | - | chr7_4:11548730-11548749 | None:intergenic | 40.0% |
| AGCTCACAACCTAATGTGTT+TGG | + | chr7_4:11548733-11548752 | Msa1140160:CDS | 40.0% | |
| GCTCACAACCTAATGTGTTT+GGG | + | chr7_4:11548734-11548753 | Msa1140160:CDS | 40.0% | |
| AAGGCCGATATTTGACAACA+TGG | - | chr7_4:11549317-11549336 | None:intergenic | 40.0% | |
| ATGTTGTCAAATATCGGCCT+TGG | + | chr7_4:11549316-11549335 | Msa1140160:intron | 40.0% | |
| ! | ATCCTTCAGAAGATTGGTCA+TGG | - | chr7_4:11549389-11549408 | None:intergenic | 40.0% |
| ! | ACCAATCTTCTGAAGGATAG+TGG | + | chr7_4:11549391-11549410 | Msa1140160:intron | 40.0% |
| ACCACTATCCTTCAGAAGAT+TGG | - | chr7_4:11549395-11549414 | None:intergenic | 40.0% | |
| ! | CATATAGGAGTATGATGCCA+TGG | - | chr7_4:11549419-11549438 | None:intergenic | 40.0% |
| CATGGCATCATACTCCTATA+TGG | + | chr7_4:11549417-11549436 | Msa1140160:intron | 40.0% | |
| !!! | TGTGCCATATGTCTGGTTTT+TGG | + | chr7_4:11549441-11549460 | Msa1140160:intron | 40.0% |
| AGAGCCAAAAACCAGACATA+TGG | - | chr7_4:11549448-11549467 | None:intergenic | 40.0% | |
| TGACATAGTGGTCATTCACT+TGG | - | chr7_4:11549592-11549611 | None:intergenic | 40.0% | |
| ATGCAACATTACTGCTTACC+CGG | - | chr7_4:11549652-11549671 | None:intergenic | 40.0% | |
| ACTAGAATCACTGAACCAGT+GGG | + | chr7_4:11549766-11549785 | Msa1140160:CDS | 40.0% | |
| ATCAATGGAATGTACAGGTC+AGG | - | chr7_4:11549835-11549854 | None:intergenic | 40.0% | |
| TGACCTGTACATTCCATTGA+TGG | + | chr7_4:11549834-11549853 | Msa1140160:CDS | 40.0% | |
| ATGCCATCAATGGAATGTAC+AGG | - | chr7_4:11549840-11549859 | None:intergenic | 40.0% | |
| TAGGTACCAAATGCCATCAA+TGG | - | chr7_4:11549850-11549869 | None:intergenic | 40.0% | |
| AATTTATCGCATGGAGCTCT+AGG | - | chr7_4:11549986-11550005 | None:intergenic | 40.0% | |
| ACAGACATATCAGCATGGAT+AGG | - | chr7_4:11550040-11550059 | None:intergenic | 40.0% | |
| GTTACTGCACATAACGTTTC+TGG | - | chr7_4:11550106-11550125 | None:intergenic | 40.0% | |
| ATTGCACAAGGTAGATAACC+AGG | - | chr7_4:11550299-11550318 | None:intergenic | 40.0% | |
| ATAGCCTGACTCTGTTAATG+CGG | - | chr7_4:11550335-11550354 | None:intergenic | 40.0% | |
| GTTTGAGAGATCAGATGTTG+TGG | + | chr7_4:11550539-11550558 | Msa1140160:intron | 40.0% | |
| CGAAATGACAAATGCTAGTC+GGG | - | chr7_4:11550574-11550593 | None:intergenic | 40.0% | |
| GCGAAATGACAAATGCTAGT+CGG | - | chr7_4:11550575-11550594 | None:intergenic | 40.0% | |
| ! | ACTAGCATTTGTCATTTCGC+CGG | + | chr7_4:11550575-11550594 | Msa1140160:intron | 40.0% |
| CTATTTGATACCCAGAGTCT+TGG | + | chr7_4:11550874-11550893 | Msa1140160:intron | 40.0% | |
| ATTAAAGCCCGAGTCTGTTA+AGG | - | chr7_4:11551068-11551087 | None:intergenic | 40.0% | |
| AAGACGGGAGTTTAATTCCT+GGG | - | chr7_4:11551629-11551648 | None:intergenic | 40.0% | |
| AAAGACGGGAGTTTAATTCC+TGG | - | chr7_4:11551630-11551649 | None:intergenic | 40.0% | |
| AACTCCCGTCTTTATATTCC+CGG | + | chr7_4:11551637-11551656 | Msa1140160:intron | 40.0% | |
| ATACCCGGGAATATAAAGAC+GGG | - | chr7_4:11551644-11551663 | None:intergenic | 40.0% | |
| CATACCCGGGAATATAAAGA+CGG | - | chr7_4:11551645-11551664 | None:intergenic | 40.0% | |
| ! | CTAACATTTGTCGTTTCGTC+TGG | + | chr7_4:11551706-11551725 | Msa1140160:intron | 40.0% |
| CTTAACACTAGAAACCTGGT+AGG | - | chr7_4:11552075-11552094 | None:intergenic | 40.0% | |
| TAATGCTTCAGGACTAAACC+TGG | - | chr7_4:11552176-11552195 | None:intergenic | 40.0% | |
| CTGGTTATTCATCAAGGGAA+TGG | + | chr7_4:11552198-11552217 | Msa1140160:CDS | 40.0% | |
| TTGGACATTGTAGCATATGC+AGG | + | chr7_4:11552292-11552311 | Msa1140160:CDS | 40.0% | |
| TGGACATTGTAGCATATGCA+GGG | + | chr7_4:11552293-11552312 | Msa1140160:CDS | 40.0% | |
| ! | TATGCAGGGTATACTTTTGC+GGG | + | chr7_4:11552307-11552326 | Msa1140160:CDS | 40.0% |
| CAATGAAGAGCAAGAGATAG+TGG | - | chr7_4:11552483-11552502 | None:intergenic | 40.0% | |
| TCTCTTGCTCTTCATTGCTT+TGG | + | chr7_4:11552486-11552505 | Msa1140160:CDS | 40.0% | |
| TTCCAAGCCACATGAACAAT+GGG | - | chr7_4:11552519-11552538 | None:intergenic | 40.0% | |
| TTTCCAAGCCACATGAACAA+TGG | - | chr7_4:11552520-11552539 | None:intergenic | 40.0% | |
| TTGAAGGCCATACTGAAAGA+AGG | - | chr7_4:11552740-11552759 | None:intergenic | 40.0% | |
| CAAAACGGTGCGGATTTAGA+AGG | + | chr7_4:11547727-11547746 | Msa1140160:five_prime_UTR | 45.0% | |
| TTGCATTGCACACTTCACTC+AGG | + | chr7_4:11547755-11547774 | Msa1140160:five_prime_UTR | 45.0% | |
| ATTGCACACTTCACTCAGGT+AGG | + | chr7_4:11547759-11547778 | Msa1140160:intron | 45.0% | |
| AAACACGGACAGTTCAAGTG+TGG | - | chr7_4:11548481-11548500 | None:intergenic | 45.0% | |
| TAACAATGTCAGGCCACAAC+TGG | + | chr7_4:11548678-11548697 | Msa1140160:CDS | 45.0% | |
| AACAATGTCAGGCCACAACT+GGG | + | chr7_4:11548679-11548698 | Msa1140160:CDS | 45.0% | |
| GGAAGTTGAGGCTGAAATTG+GGG | - | chr7_4:11548709-11548728 | None:intergenic | 45.0% | |
| !! | TGTGAGCTTGTTGGAAGTTG+AGG | - | chr7_4:11548721-11548740 | None:intergenic | 45.0% |
| GGGAATGCATTTAATGCTGC+CGG | + | chr7_4:11548754-11548773 | Msa1140160:CDS | 45.0% | |
| CTCTTCGATCCCATATCTCT+AGG | + | chr7_4:11549020-11549039 | Msa1140160:intron | 45.0% | |
| AGAGTCAGGCTCCATCAATT+TGG | + | chr7_4:11549220-11549239 | Msa1140160:intron | 45.0% | |
| GAGTCAGGCTCCATCAATTT+GGG | + | chr7_4:11549221-11549240 | Msa1140160:intron | 45.0% | |
| ! | CTTCAGAAGATTGGTCATGG+TGG | - | chr7_4:11549386-11549405 | None:intergenic | 45.0% |
| CACCATGACCAATCTTCTGA+AGG | + | chr7_4:11549384-11549403 | Msa1140160:intron | 45.0% | |
| GACATATGGCACAGCCATAT+AGG | - | chr7_4:11549434-11549453 | None:intergenic | 45.0% | |
| ATATGGCTGTGCCATATGTC+TGG | + | chr7_4:11549434-11549453 | Msa1140160:intron | 45.0% | |
| GACTAGAATCACTGAACCAG+TGG | + | chr7_4:11549765-11549784 | Msa1140160:CDS | 45.0% | |
| AATGCCAGCAAGCACAACAT+AGG | - | chr7_4:11549869-11549888 | None:intergenic | 45.0% | |
| !! | CTCTAGGACACACGAATTTG+AGG | - | chr7_4:11549970-11549989 | None:intergenic | 45.0% |
| TAGATAACCAGGCAATGCCA+CGG | - | chr7_4:11550288-11550307 | None:intergenic | 45.0% | |
| TGTACCGCATTAACAGAGTC+AGG | + | chr7_4:11550328-11550347 | Msa1140160:intron | 45.0% | |
| CTGTACTGCCTTAACAGACT+CGG | + | chr7_4:11551057-11551076 | Msa1140160:intron | 45.0% | |
| TGTACTGCCTTAACAGACTC+GGG | + | chr7_4:11551058-11551077 | Msa1140160:intron | 45.0% | |
| ATTCCTGGGAATACATGGGT+AGG | + | chr7_4:11551370-11551389 | Msa1140160:intron | 45.0% | |
| TTCCTGGGAATACATGGGTA+GGG | + | chr7_4:11551371-11551390 | Msa1140160:intron | 45.0% | |
| TATTCCTGGGCATAGATTCC+TGG | + | chr7_4:11551434-11551453 | Msa1140160:intron | 45.0% | |
| ATTCCTGGGCATAGATTCCT+GGG | + | chr7_4:11551435-11551454 | Msa1140160:intron | 45.0% | |
| ACTCCCGTCTTTATATTCCC+GGG | + | chr7_4:11551638-11551657 | Msa1140160:intron | 45.0% | |
| !! | TGGGTTGTTGGCTTGTAAGA+AGG | + | chr7_4:11551866-11551885 | Msa1140160:intron | 45.0% |
| !! | GGGTTGTTGGCTTGTAAGAA+GGG | + | chr7_4:11551867-11551886 | Msa1140160:intron | 45.0% |
| !! | GGTTGTTGGCTTGTAAGAAG+GGG | + | chr7_4:11551868-11551887 | Msa1140160:intron | 45.0% |
| GAATGATTGAGGTAGGACAC+AGG | - | chr7_4:11551980-11551999 | None:intergenic | 45.0% | |
| TCATCAAGGGAATGGTTGGT+TGG | + | chr7_4:11552206-11552225 | Msa1140160:CDS | 45.0% | |
| !! | AAGTGGAGAAGCACCACTAT+TGG | + | chr7_4:11552273-11552292 | Msa1140160:CDS | 45.0% |
| ! | TACTTTTGCGGGCATGTCTT+TGG | + | chr7_4:11552318-11552337 | Msa1140160:CDS | 45.0% |
| CCATGGCATCAAAACGTAGT+AGG | - | chr7_4:11552374-11552393 | None:intergenic | 45.0% | |
| !! | CCTACTACGTTTTGATGCCA+TGG | + | chr7_4:11552371-11552390 | Msa1140160:CDS | 45.0% |
| AACTCCTGACTTCGGCAAAA+AGG | - | chr7_4:11552444-11552463 | None:intergenic | 45.0% | |
| CGAGTCATAACTCCTGACTT+CGG | - | chr7_4:11552452-11552471 | None:intergenic | 45.0% | |
| CTCAGTTCCCATTGTTCATG+TGG | + | chr7_4:11552509-11552528 | Msa1140160:CDS | 45.0% | |
| TTCCCATTGTTCATGTGGCT+TGG | + | chr7_4:11552514-11552533 | Msa1140160:CDS | 45.0% | |
| TAAAAGCAAGGGAGAGAGAG+AGG | - | chr7_4:11552658-11552677 | None:intergenic | 45.0% | |
| !! | TAAAAAAAACATTATAAATT+AGG | - | chr7_4:11548034-11548053 | None:intergenic | 5.0% |
| TGATACACAGTGGCATAGCC+AGG | + | chr7_4:11548222-11548241 | Msa1140160:intron | 50.0% | |
| ACTATAGTGTGACTCTGCCC+TGG | + | chr7_4:11548522-11548541 | Msa1140160:intron | 50.0% | |
| ACAATGTCAGGCCACAACTG+GGG | + | chr7_4:11548680-11548699 | Msa1140160:CDS | 50.0% | |
| !! | GCATTTAATGCTGCCGGTTC+TGG | + | chr7_4:11548760-11548779 | Msa1140160:CDS | 50.0% |
| TCCTCGAATGAGTCCAGAAC+CGG | - | chr7_4:11548776-11548795 | None:intergenic | 50.0% | |
| TGGACTCATTCGAGGAGGAT+TGG | + | chr7_4:11548780-11548799 | Msa1140160:CDS | 50.0% | |
| GGACTCATTCGAGGAGGATT+GGG | + | chr7_4:11548781-11548800 | Msa1140160:CDS | 50.0% | |
| CAGGCTCCATCAATTTGGGA+AGG | + | chr7_4:11549225-11549244 | Msa1140160:intron | 50.0% | |
| ! | TCTGAAGGATAGTGGTGCCA+TGG | + | chr7_4:11549399-11549418 | Msa1140160:intron | 50.0% |
| ! | TTTTGTTCCCGTTCCTGCAC+CGG | + | chr7_4:11549630-11549649 | Msa1140160:CDS | 50.0% |
| AGAATCACTGAACCAGTGGG+AGG | + | chr7_4:11549769-11549788 | Msa1140160:CDS | 50.0% | |
| TAAGAGAGTCTACCTCCCAC+TGG | - | chr7_4:11549784-11549803 | None:intergenic | 50.0% | |
| GGTACCTATGTTGTGCTTGC+TGG | + | chr7_4:11549862-11549881 | Msa1140160:CDS | 50.0% | |
| ! | GTGCTTGCTGGCATTTCACT+TGG | + | chr7_4:11549874-11549893 | Msa1140160:CDS | 50.0% |
| ! | GGCATTTCACTTGGTCTTCG+TGG | + | chr7_4:11549883-11549902 | Msa1140160:CDS | 50.0% |
| AAGTTTCTTCTGTCTGGCCG+TGG | + | chr7_4:11550268-11550287 | Msa1140160:intron | 50.0% | |
| TGTCTGGTAGTAGCAGTGCA+TGG | + | chr7_4:11551015-11551034 | Msa1140160:intron | 50.0% | |
| TTCCCTACCCATGTATTCCC+AGG | - | chr7_4:11551376-11551395 | None:intergenic | 50.0% | |
| ATTCCCAGGAATCTATGCCC+AGG | - | chr7_4:11551441-11551460 | None:intergenic | 50.0% | |
| AATTACTCCGGGTTCCTACC+AGG | + | chr7_4:11552058-11552077 | Msa1140160:intron | 50.0% | |
| CTAGAAACCTGGTAGGAACC+CGG | - | chr7_4:11552068-11552087 | None:intergenic | 50.0% | |
| GGCATGTCTTTGGCTGTTCT+TGG | + | chr7_4:11552328-11552347 | Msa1140160:CDS | 50.0% | |
| ! | GCCATGGTTCTGCTTATGCA+TGG | + | chr7_4:11552387-11552406 | Msa1140160:CDS | 50.0% |
| GCCATGCATAAGCAGAACCA+TGG | - | chr7_4:11552391-11552410 | None:intergenic | 50.0% | |
| ! | GAGTCCTTTTTGCCGAAGTC+AGG | + | chr7_4:11552437-11552456 | Msa1140160:CDS | 50.0% |
| CAATGTCAGGCCACAACTGG+GGG | + | chr7_4:11548681-11548700 | Msa1140160:CDS | 55.0% | |
| !! | GGTTCTGGACTCATTCGAGG+AGG | + | chr7_4:11548775-11548794 | Msa1140160:CDS | 55.0% |
| CGAGGAGGATTGGGTGCATA+TGG | + | chr7_4:11548790-11548809 | Msa1140160:CDS | 55.0% | |
| TTTGTTCCCGTTCCTGCACC+GGG | + | chr7_4:11549631-11549650 | Msa1140160:CDS | 55.0% | |
| CATTACTGCTTACCCGGTGC+AGG | - | chr7_4:11549646-11549665 | None:intergenic | 55.0% | |
| GCATAGCCAGGACGCTGAGT+CGG | + | chr7_4:11548234-11548253 | Msa1140160:intron | 60.0% | |
| CATAGCCAGGACGCTGAGTC+GGG | + | chr7_4:11548235-11548254 | Msa1140160:intron | 60.0% | |
| ATAGCCAGGACGCTGAGTCG+GGG | + | chr7_4:11548236-11548255 | Msa1140160:intron | 60.0% | |
| ! | AATTGGGGCACCCCCAGTTG+TGG | - | chr7_4:11548694-11548713 | None:intergenic | 60.0% |
| !! | GCCGGTTCTGGACTCATTCG+AGG | + | chr7_4:11548772-11548791 | Msa1140160:CDS | 60.0% |
| ACAACCTGCCATGCCACCGA+TGG | - | chr7_4:11549356-11549375 | None:intergenic | 60.0% | |
| TGCTTACCCGGTGCAGGAAC+GGG | - | chr7_4:11549640-11549659 | None:intergenic | 60.0% | |
| CTGCTTACCCGGTGCAGGAA+CGG | - | chr7_4:11549641-11549660 | None:intergenic | 60.0% | |
| TAGCCAGGACGCTGAGTCGG+GGG | + | chr7_4:11548237-11548256 | Msa1140160:intron | 65.0% | |
| TATCGGCCTTGGCAGCGCCA+TGG | + | chr7_4:11549327-11549346 | Msa1140160:intron | 65.0% | |
| CATGCCACCGATGGCCACCA+TGG | - | chr7_4:11549347-11549366 | None:intergenic | 65.0% | |
| CATGGTGGCCATCGGTGGCA+TGG | + | chr7_4:11549345-11549364 | Msa1140160:intron | 65.0% | |
| TGTCTGGCCGTGGCATTGCC+TGG | + | chr7_4:11550278-11550297 | Msa1140160:intron | 65.0% | |
| GAACCCCCGACTCAGCGTCC+TGG | - | chr7_4:11548243-11548262 | None:intergenic | 70.0% | |
| TGGCCACCATGGCGCTGCCA+AGG | - | chr7_4:11549336-11549355 | None:intergenic | 70.0% | |
| GGCAGCGCCATGGTGGCCAT+CGG | + | chr7_4:11549337-11549356 | Msa1140160:intron | 70.0% | |
| AGCGCCATGGTGGCCATCGG+TGG | + | chr7_4:11549340-11549359 | Msa1140160:intron | 70.0% | |
| GTGGCCATCGGTGGCATGGC+AGG | + | chr7_4:11549349-11549368 | Msa1140160:intron | 70.0% | |
| CGGCCTTGGCAGCGCCATGG+TGG | + | chr7_4:11549330-11549349 | Msa1140160:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 11547517 | 11552780 | 11547517 | ID=Msa1140160;Name=Msa1140160 |
| chr7_4 | mRNA | 11547517 | 11552780 | 11547517 | ID=Msa1140160-mRNA-1;Parent=Msa1140160;Name=Msa1140160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=265|0.6|0.83|0.83|0.8|0.66|6|216|314 |
| chr7_4 | exon | 11547517 | 11547776 | 11547517 | ID=Msa1140160-mRNA-1:exon:2698;Parent=Msa1140160-mRNA-1 |
| chr7_4 | exon | 11548668 | 11548855 | 11548668 | ID=Msa1140160-mRNA-1:exon:2699;Parent=Msa1140160-mRNA-1 |
| chr7_4 | exon | 11549554 | 11549652 | 11549554 | ID=Msa1140160-mRNA-1:exon:2700;Parent=Msa1140160-mRNA-1 |
| chr7_4 | exon | 11549757 | 11549908 | 11549757 | ID=Msa1140160-mRNA-1:exon:2701;Parent=Msa1140160-mRNA-1 |
| chr7_4 | exon | 11549988 | 11550110 | 11549988 | ID=Msa1140160-mRNA-1:exon:2702;Parent=Msa1140160-mRNA-1 |
| chr7_4 | exon | 11552177 | 11552780 | 11552177 | ID=Msa1140160-mRNA-1:exon:2703;Parent=Msa1140160-mRNA-1 |
| chr7_4 | five_prime_UTR | 11547517 | 11547776 | 11547517 | ID=Msa1140160-mRNA-1:five_prime_utr;Parent=Msa1140160-mRNA-1 |
| chr7_4 | five_prime_UTR | 11548668 | 11548672 | 11548668 | ID=Msa1140160-mRNA-1:five_prime_utr;Parent=Msa1140160-mRNA-1 |
| chr7_4 | CDS | 11548673 | 11548855 | 11548673 | ID=Msa1140160-mRNA-1:cds;Parent=Msa1140160-mRNA-1 |
| chr7_4 | CDS | 11549554 | 11549652 | 11549554 | ID=Msa1140160-mRNA-1:cds;Parent=Msa1140160-mRNA-1 |
| chr7_4 | CDS | 11549757 | 11549908 | 11549757 | ID=Msa1140160-mRNA-1:cds;Parent=Msa1140160-mRNA-1 |
| chr7_4 | CDS | 11549988 | 11550110 | 11549988 | ID=Msa1140160-mRNA-1:cds;Parent=Msa1140160-mRNA-1 |
| chr7_4 | CDS | 11552177 | 11552564 | 11552177 | ID=Msa1140160-mRNA-1:cds;Parent=Msa1140160-mRNA-1 |
| chr7_4 | three_prime_UTR | 11552565 | 11552780 | 11552565 | ID=Msa1140160-mRNA-1:three_prime_utr;Parent=Msa1140160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
