Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773850 | G7JYH8 | 93.407 | 91 | 6 | 0 | 1 | 91 | 1 | 91 | 8.46e-51 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0773850 | 0.829364 | 5.364972e-55 | -8.615850e-47 |
| Msa0015090 | Msa0773850 | 0.806646 | 7.435583e-50 | -8.615850e-47 |
| Msa0015390 | Msa0773850 | 0.822064 | 2.892347e-53 | -8.615850e-47 |
| Msa0020410 | Msa0773850 | 0.825985 | 3.477007e-54 | -8.615850e-47 |
| Msa0021210 | Msa0773850 | 0.830015 | 3.725665e-55 | -8.615850e-47 |
| Msa0031520 | Msa0773850 | 0.801732 | 7.835272e-49 | -8.615850e-47 |
| Msa0032860 | Msa0773850 | 0.801657 | 8.118937e-49 | -8.615850e-47 |
| Msa0034970 | Msa0773850 | 0.821740 | 3.438920e-53 | -8.615850e-47 |
| Msa0035150 | Msa0773850 | 0.807754 | 4.330973e-50 | -8.615850e-47 |
| Msa0037880 | Msa0773850 | 0.832740 | 7.954559e-56 | -8.615850e-47 |
| Msa0043980 | Msa0773850 | 0.815451 | 9.181118e-52 | -8.615850e-47 |
| Msa0044000 | Msa0773850 | 0.810042 | 1.403271e-50 | -8.615850e-47 |
| Msa0049750 | Msa0773850 | 0.809125 | 2.208497e-50 | -8.615850e-47 |
| Msa0051860 | Msa0773850 | 0.809431 | 1.898636e-50 | -8.615850e-47 |
| Msa0058490 | Msa0773850 | 0.822173 | 2.728665e-53 | -8.615850e-47 |
| Msa0058510 | Msa0773850 | 0.825493 | 4.549227e-54 | -8.615850e-47 |
| Msa0065950 | Msa0773850 | 0.815571 | 8.636164e-52 | -8.615850e-47 |
| Msa0079070 | Msa0773850 | 0.813594 | 2.365418e-51 | -8.615850e-47 |
| Msa0083280 | Msa0773850 | 0.809884 | 1.517723e-50 | -8.615850e-47 |
| Msa0086420 | Msa0773850 | 0.832808 | 7.650488e-56 | -8.615850e-47 |
| Msa0089820 | Msa0773850 | 0.822307 | 2.540775e-53 | -8.615850e-47 |
| Msa0090550 | Msa0773850 | 0.805519 | 1.283856e-49 | -8.615850e-47 |
| Msa0096980 | Msa0773850 | 0.801308 | 9.572491e-49 | -8.615850e-47 |
| Msa0104800 | Msa0773850 | 0.835448 | 1.667922e-56 | -8.615850e-47 |
| Msa0106850 | Msa0773850 | 0.806569 | 7.719237e-50 | -8.615850e-47 |
| Msa0114430 | Msa0773850 | 0.840179 | 1.016370e-57 | -8.615850e-47 |
| Msa0115270 | Msa0773850 | 0.803361 | 3.616581e-49 | -8.615850e-47 |
| Msa0602980 | Msa0773850 | 0.811955 | 5.404434e-51 | -8.615850e-47 |
| Msa0604290 | Msa0773850 | 0.815571 | 8.636164e-52 | -8.615850e-47 |
| Msa0608160 | Msa0773850 | 0.825537 | 4.442193e-54 | -8.615850e-47 |
| Msa0628740 | Msa0773850 | 0.826314 | 2.904391e-54 | -8.615850e-47 |
| Msa0639310 | Msa0773850 | 0.805716 | 1.166874e-49 | -8.615850e-47 |
| Msa0648080 | Msa0773850 | 0.829593 | 4.721077e-55 | -8.615850e-47 |
| Msa0653490 | Msa0773850 | 0.810177 | 1.311958e-50 | -8.615850e-47 |
| Msa0659400 | Msa0773850 | 0.824735 | 6.872455e-54 | -8.615850e-47 |
| Msa0666140 | Msa0773850 | 0.818681 | 1.726559e-52 | -8.615850e-47 |
| Msa0669410 | Msa0773850 | 0.828569 | 8.358114e-55 | -8.615850e-47 |
| Msa0682680 | Msa0773850 | 0.819535 | 1.103604e-52 | -8.615850e-47 |
| Msa0685090 | Msa0773850 | 0.807441 | 5.048297e-50 | -8.615850e-47 |
| Msa0698540 | Msa0773850 | 0.814577 | 1.435177e-51 | -8.615850e-47 |
| Msa0703780 | Msa0773850 | 0.803463 | 3.444689e-49 | -8.615850e-47 |
| Msa0711100 | Msa0773850 | 0.802167 | 6.378226e-49 | -8.615850e-47 |
| Msa0721280 | Msa0773850 | 0.803188 | 3.927452e-49 | -8.615850e-47 |
| Msa0722070 | Msa0773850 | 0.800301 | 1.536557e-48 | -8.615850e-47 |
| Msa0732880 | Msa0773850 | 0.860055 | 2.696180e-63 | -8.615850e-47 |
| Msa0737600 | Msa0773850 | 0.807899 | 4.034581e-50 | -8.615850e-47 |
| Msa0740510 | Msa0773850 | 0.804296 | 2.312603e-49 | -8.615850e-47 |
| Msa0745260 | Msa0773850 | -0.807874 | 4.083062e-50 | -8.615850e-47 |
| Msa0747060 | Msa0773850 | 0.813260 | 2.800735e-51 | -8.615850e-47 |
| Msa0747260 | Msa0773850 | 0.812520 | 4.067396e-51 | -8.615850e-47 |
| Msa0763890 | Msa0773850 | 0.809516 | 1.820193e-50 | -8.615850e-47 |
| Msa0773850 | Msa0800210 | 0.847832 | 9.010046e-60 | -8.615850e-47 |
| Msa0773850 | Msa0808080 | 0.805329 | 1.406690e-49 | -8.615850e-47 |
| Msa0773850 | Msa0820770 | 0.806813 | 6.853801e-50 | -8.615850e-47 |
| Msa0773850 | Msa0820850 | 0.818294 | 2.113122e-52 | -8.615850e-47 |
| Msa0773850 | Msa0831850 | 0.805719 | 1.165426e-49 | -8.615850e-47 |
| Msa0773850 | Msa0832150 | 0.813333 | 2.699897e-51 | -8.615850e-47 |
| Msa0773850 | Msa0832340 | 0.815675 | 8.188706e-52 | -8.615850e-47 |
| Msa0773850 | Msa0842710 | 0.850556 | 1.573464e-60 | -8.615850e-47 |
| Msa0773850 | Msa0844490 | 0.815659 | 8.254585e-52 | -8.615850e-47 |
| Msa0773850 | Msa0849030 | 0.825670 | 4.130436e-54 | -8.615850e-47 |
| Msa0773850 | Msa0861090 | 0.803140 | 4.017330e-49 | -8.615850e-47 |
| Msa0773850 | Msa0861130 | 0.821734 | 3.448609e-53 | -8.615850e-47 |
| Msa0773850 | Msa0866410 | 0.808799 | 2.592781e-50 | -8.615850e-47 |
| Msa0773850 | Msa0894710 | 0.813058 | 3.101012e-51 | -8.615850e-47 |
| Msa0773850 | Msa0948320 | 0.820380 | 7.071124e-53 | -8.615850e-47 |
| Msa0773850 | Msa0963270 | 0.811579 | 6.522475e-51 | -8.615850e-47 |
| Msa0773850 | Msa0969810 | 0.830782 | 2.419741e-55 | -8.615850e-47 |
| Msa0773850 | Msa0974930 | 0.803264 | 3.786820e-49 | -8.615850e-47 |
| Msa0773850 | Msa0980880 | 0.808068 | 3.713176e-50 | -8.615850e-47 |
| Msa0773850 | Msa0994370 | 0.812763 | 3.600133e-51 | -8.615850e-47 |
| Msa0773850 | Msa1002360 | 0.816565 | 5.179167e-52 | -8.615850e-47 |
| Msa0773850 | Msa1023180 | 0.809532 | 1.806381e-50 | -8.615850e-47 |
| Msa0773850 | Msa1034150 | 0.800229 | 1.589204e-48 | -8.615850e-47 |
| Msa0773850 | Msa1043050 | 0.814102 | 1.827615e-51 | -8.615850e-47 |
| Msa0773850 | Msa1058750 | 0.812088 | 5.055111e-51 | -8.615850e-47 |
| Msa0773850 | Msa1063510 | 0.816079 | 6.653996e-52 | -8.615850e-47 |
| Msa0773850 | Msa1082020 | 0.804623 | 1.976829e-49 | -8.615850e-47 |
| Msa0773850 | Msa1090260 | 0.801286 | 9.674582e-49 | -8.615850e-47 |
| Msa0773850 | Msa1109680 | 0.802719 | 4.909971e-49 | -8.615850e-47 |
| Msa0773850 | Msa1114410 | 0.815933 | 7.171687e-52 | -8.615850e-47 |
| Msa0773850 | Msa1123710 | -0.803354 | 3.628108e-49 | -8.615850e-47 |
| Msa0773850 | Msa1137570 | 0.806132 | 9.544517e-50 | -8.615850e-47 |
| Msa0773850 | Msa1140160 | 0.802207 | 6.260872e-49 | -8.615850e-47 |
| Msa0773850 | Msa1144890 | 0.801072 | 1.069671e-48 | -8.615850e-47 |
| Msa0773850 | Msa1150710 | 0.821675 | 3.558749e-53 | -8.615850e-47 |
| Msa0773850 | Msa1168580 | 0.807390 | 5.173591e-50 | -8.615850e-47 |
| Msa0773850 | Msa1174040 | 0.836674 | 8.148853e-57 | -8.615850e-47 |
| Msa0773850 | Msa1186360 | 0.802413 | 5.677730e-49 | -8.615850e-47 |
| Msa0773850 | Msa1190930 | 0.823637 | 1.244190e-53 | -8.615850e-47 |
| Msa0773850 | Msa1208380 | 0.819174 | 1.333596e-52 | -8.615850e-47 |
| Msa0773850 | Msa1210020 | 0.825854 | 3.736114e-54 | -8.615850e-47 |
| Msa0773850 | Msa1212950 | 0.803245 | 3.821877e-49 | -8.615850e-47 |
| Msa0773850 | Msa1237980 | 0.819592 | 1.071168e-52 | -8.615850e-47 |
| Msa0773850 | Msa1244610 | 0.817907 | 2.584287e-52 | -8.615850e-47 |
| Msa0773850 | Msa1247250 | 0.813477 | 2.509261e-51 | -8.615850e-47 |
| Msa0773850 | Msa1250530 | 0.822782 | 1.970363e-53 | -8.615850e-47 |
| Msa0773850 | Msa1253020 | 0.801214 | 1.000574e-48 | -8.615850e-47 |
| Msa0773850 | Msa1254730 | 0.814914 | 1.208730e-51 | -8.615850e-47 |
| Msa0773850 | Msa1267520 | 0.812825 | 3.489046e-51 | -8.615850e-47 |
| Msa0773850 | Msa1269940 | 0.804795 | 1.819594e-49 | -8.615850e-47 |
| Msa0773850 | Msa1270660 | 0.820763 | 5.775372e-53 | -8.615850e-47 |
| Msa0773850 | Msa1270730 | 0.821659 | 3.589210e-53 | -8.615850e-47 |
| Msa0773850 | Msa1271130 | 0.806036 | 9.996198e-50 | -8.615850e-47 |
| Msa0773850 | Msa1286800 | 0.808243 | 3.408234e-50 | -8.615850e-47 |
| Msa0773850 | Msa1294820 | 0.806100 | 9.691354e-50 | -8.615850e-47 |
| Msa0773850 | Msa1295330 | 0.810618 | 1.053966e-50 | -8.615850e-47 |
| Msa0773850 | Msa1298510 | 0.809501 | 1.833729e-50 | -8.615850e-47 |
| Msa0773850 | Msa1299950 | 0.811894 | 5.571508e-51 | -8.615850e-47 |
| Msa0773850 | Msa1302640 | 0.816809 | 4.566915e-52 | -8.615850e-47 |
| Msa0773850 | Msa1305190 | 0.809920 | 1.490459e-50 | -8.615850e-47 |
| Msa0773850 | Msa1305340 | 0.819803 | 9.588125e-53 | -8.615850e-47 |
| Msa0773850 | Msa1305810 | 0.817973 | 2.497753e-52 | -8.615850e-47 |
| Msa0773850 | Msa1310400 | 0.803124 | 4.048849e-49 | -8.615850e-47 |
| Msa0773850 | Msa1313320 | 0.805187 | 1.506855e-49 | -8.615850e-47 |
| Msa0773850 | Msa1316440 | 0.807586 | 4.702843e-50 | -8.615850e-47 |
| Msa0773850 | Msa1329550 | 0.802042 | 6.767584e-49 | -8.615850e-47 |
| Msa0773850 | Msa1341950 | 0.803743 | 3.013107e-49 | -8.615850e-47 |
| Msa0773850 | Msa1345220 | 0.802503 | 5.440248e-49 | -8.615850e-47 |
| Msa0773850 | Msa1353470 | 0.820617 | 6.240747e-53 | -8.615850e-47 |
| Msa0773850 | Msa1357890 | 0.805528 | 1.278286e-49 | -8.615850e-47 |
| Msa0773850 | Msa1397120 | 0.864889 | 8.786752e-65 | -8.615850e-47 |
| Msa0773850 | Msa1398090 | 0.804846 | 1.775198e-49 | -8.615850e-47 |
| Msa0773850 | Msa1403340 | 0.828049 | 1.115480e-54 | -8.615850e-47 |
| Msa0773850 | Msa1403890 | 0.859319 | 4.491449e-63 | -8.615850e-47 |
| Msa0773850 | Msa1407600 | 0.815873 | 7.394283e-52 | -8.615850e-47 |
| Msa0773850 | Msa1410690 | 0.806951 | 6.408370e-50 | -8.615850e-47 |
| Msa0773850 | Msa1420820 | 0.836497 | 9.037007e-57 | -8.615850e-47 |
| Msa0773850 | Msa1424450 | 0.810297 | 1.236373e-50 | -8.615850e-47 |
| Msa0773850 | Msa1427230 | 0.817434 | 3.305128e-52 | -8.615850e-47 |
| Msa0773850 | Msa1440190 | 0.813264 | 2.795287e-51 | -8.615850e-47 |
| Msa0773850 | Msa1444740 | 0.814306 | 1.647438e-51 | -8.615850e-47 |
| Msa0773850 | Msa1449750 | 0.811701 | 6.136017e-51 | -8.615850e-47 |
| Msa0773850 | Msa1458610 | 0.845637 | 3.586631e-59 | -8.615850e-47 |
| Msa0773850 | Msa1460830 | 0.810272 | 1.251944e-50 | -8.615850e-47 |
| Msa0773850 | Msa1462070 | 0.810697 | 1.013311e-50 | -8.615850e-47 |
| Msa0773850 | Msa1462290 | 0.830793 | 2.404369e-55 | -8.615850e-47 |
| Msa0127800 | Msa0773850 | 0.807676 | 4.498699e-50 | -8.615850e-47 |
| Msa0131770 | Msa0773850 | 0.807098 | 5.965983e-50 | -8.615850e-47 |
| Msa0140110 | Msa0773850 | 0.804308 | 2.299077e-49 | -8.615850e-47 |
| Msa0145010 | Msa0773850 | 0.800658 | 1.299671e-48 | -8.615850e-47 |
| Msa0151180 | Msa0773850 | 0.842135 | 3.110336e-58 | -8.615850e-47 |
| Msa0153830 | Msa0773850 | 0.806397 | 8.391832e-50 | -8.615850e-47 |
| Msa0159420 | Msa0773850 | 0.806140 | 9.504978e-50 | -8.615850e-47 |
| Msa0167980 | Msa0773850 | 0.800305 | 1.533786e-48 | -8.615850e-47 |
| Msa0173070 | Msa0773850 | 0.801597 | 8.354117e-49 | -8.615850e-47 |
| Msa0175840 | Msa0773850 | 0.841248 | 5.331117e-58 | -8.615850e-47 |
| Msa0187250 | Msa0773850 | 0.818116 | 2.318026e-52 | -8.615850e-47 |
| Msa0189520 | Msa0773850 | 0.810375 | 1.189558e-50 | -8.615850e-47 |
| Msa0190250 | Msa0773850 | 0.833491 | 5.172088e-56 | -8.615850e-47 |
| Msa0204960 | Msa0773850 | 0.803348 | 3.639233e-49 | -8.615850e-47 |
| Msa0205510 | Msa0773850 | 0.814480 | 1.507804e-51 | -8.615850e-47 |
| Msa0206010 | Msa0773850 | 0.837257 | 5.784220e-57 | -8.615850e-47 |
| Msa0207040 | Msa0773850 | -0.804739 | 1.869647e-49 | -8.615850e-47 |
| Msa0217680 | Msa0773850 | 0.830831 | 2.352664e-55 | -8.615850e-47 |
| Msa0219240 | Msa0773850 | 0.816801 | 4.586113e-52 | -8.615850e-47 |
| Msa0220240 | Msa0773850 | 0.809083 | 2.254186e-50 | -8.615850e-47 |
| Msa0229380 | Msa0773850 | 0.811970 | 5.362317e-51 | -8.615850e-47 |
| Msa0233370 | Msa0773850 | 0.801584 | 8.404910e-49 | -8.615850e-47 |
| Msa0236420 | Msa0773850 | 0.803058 | 4.178848e-49 | -8.615850e-47 |
| Msa0236510 | Msa0773850 | -0.810986 | 8.772146e-51 | -8.615850e-47 |
| Msa0376910 | Msa0773850 | 0.838067 | 3.584223e-57 | -8.615850e-47 |
| Msa0387280 | Msa0773850 | 0.803295 | 3.731734e-49 | -8.615850e-47 |
| Msa0394340 | Msa0773850 | 0.805633 | 1.214906e-49 | -8.615850e-47 |
| Msa0401560 | Msa0773850 | 0.802215 | 6.234402e-49 | -8.615850e-47 |
| Msa0402790 | Msa0773850 | 0.800642 | 1.309880e-48 | -8.615850e-47 |
| Msa0403770 | Msa0773850 | 0.803388 | 3.570800e-49 | -8.615850e-47 |
| Msa0412840 | Msa0773850 | 0.837972 | 3.791556e-57 | -8.615850e-47 |
| Msa0426900 | Msa0773850 | 0.810859 | 9.346118e-51 | -8.615850e-47 |
| Msa0433360 | Msa0773850 | 0.817337 | 3.474246e-52 | -8.615850e-47 |
| Msa0442200 | Msa0773850 | 0.822317 | 2.526894e-53 | -8.615850e-47 |
| Msa0453200 | Msa0773850 | 0.823591 | 1.275745e-53 | -8.615850e-47 |
| Msa0453350 | Msa0773850 | 0.835990 | 1.216475e-56 | -8.615850e-47 |
| Msa0454360 | Msa0773850 | 0.822107 | 2.827678e-53 | -8.615850e-47 |
| Msa0457510 | Msa0773850 | 0.818721 | 1.690600e-52 | -8.615850e-47 |
| Msa0469990 | Msa0773850 | 0.811610 | 6.422572e-51 | -8.615850e-47 |
| Msa0471900 | Msa0773850 | 0.835929 | 1.259966e-56 | -8.615850e-47 |
| Msa0472960 | Msa0773850 | -0.809403 | 1.924720e-50 | -8.615850e-47 |
| Msa0477130 | Msa0773850 | -0.833945 | 3.984954e-56 | -8.615850e-47 |
| Msa0251640 | Msa0773850 | 0.810260 | 1.259402e-50 | -8.615850e-47 |
| Msa0257490 | Msa0773850 | 0.806591 | 7.637800e-50 | -8.615850e-47 |
| Msa0257500 | Msa0773850 | 0.802545 | 5.331188e-49 | -8.615850e-47 |
| Msa0261550 | Msa0773850 | 0.811307 | 7.476587e-51 | -8.615850e-47 |
| Msa0261720 | Msa0773850 | 0.839466 | 1.557972e-57 | -8.615850e-47 |
| Msa0270960 | Msa0773850 | 0.805448 | 1.328383e-49 | -8.615850e-47 |
| Msa0278190 | Msa0773850 | 0.804665 | 1.937349e-49 | -8.615850e-47 |
| Msa0286670 | Msa0773850 | 0.841103 | 5.820767e-58 | -8.615850e-47 |
| Msa0287410 | Msa0773850 | 0.836137 | 1.115734e-56 | -8.615850e-47 |
| Msa0306210 | Msa0773850 | -0.800518 | 1.387900e-48 | -8.615850e-47 |
| Msa0309270 | Msa0773850 | 0.806099 | 9.697947e-50 | -8.615850e-47 |
| Msa0319170 | Msa0773850 | 0.831985 | 1.223801e-55 | -8.615850e-47 |
| Msa0326110 | Msa0773850 | 0.833146 | 6.305689e-56 | -8.615850e-47 |
| Msa0337060 | Msa0773850 | 0.805612 | 1.227186e-49 | -8.615850e-47 |
| Msa0343850 | Msa0773850 | 0.837193 | 6.004979e-57 | -8.615850e-47 |
| Msa0344910 | Msa0773850 | 0.801278 | 9.709070e-49 | -8.615850e-47 |
| Msa0363790 | Msa0773850 | 0.808854 | 2.523950e-50 | -8.615850e-47 |
| Msa0490140 | Msa0773850 | 0.808290 | 3.330475e-50 | -8.615850e-47 |
| Msa0501450 | Msa0773850 | 0.816292 | 5.960983e-52 | -8.615850e-47 |
| Msa0518170 | Msa0773850 | 0.805778 | 1.132613e-49 | -8.615850e-47 |
| Msa0521270 | Msa0773850 | 0.803433 | 3.495064e-49 | -8.615850e-47 |
| Msa0523460 | Msa0773850 | 0.801799 | 7.591640e-49 | -8.615850e-47 |
| Msa0529040 | Msa0773850 | 0.811191 | 7.920181e-51 | -8.615850e-47 |
| Msa0542290 | Msa0773850 | 0.806929 | 6.480176e-50 | -8.615850e-47 |
| Msa0542560 | Msa0773850 | 0.806245 | 9.031996e-50 | -8.615850e-47 |
| Msa0547160 | Msa0773850 | 0.820633 | 6.187771e-53 | -8.615850e-47 |
| Msa0575470 | Msa0773850 | 0.802465 | 5.539821e-49 | -8.615850e-47 |
| Msa0585230 | Msa0773850 | 0.806684 | 7.297643e-50 | -8.615850e-47 |
| Msa0587910 | Msa0773850 | 0.801509 | 8.707663e-49 | -8.615850e-47 |
| Msa0599890 | Msa0773850 | 0.803165 | 3.971237e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773850 | MtrunA17_Chr5g0427841 | 93.407 | 91 | 6 | 0 | 1 | 91 | 1 | 91 | 1.63e-54 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773850 | AT2G38465.1 | 59.420 | 69 | 28 | 0 | 19 | 87 | 13 | 81 | 2.67e-22 | 82.8 |
Find 19 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCACAACAAAACTTCTTT+TGG | 0.285814 | 5_2:+49210453 | Msa0773850:CDS |
| GTATCTTCATATTGTTTGTC+TGG | 0.325802 | 5_2:+49210338 | Msa0773850:five_prime_UTR |
| GATATATATTTCATCTCTTA+AGG | 0.348244 | 5_2:+49210377 | Msa0773850:five_prime_UTR |
| CATTAATTTAATTAACTATG+AGG | 0.404180 | 5_2:-49210796 | None:intergenic |
| CTGCTGAACATATCAAGAAT+AGG | 0.429170 | 5_2:+49210764 | Msa0773850:CDS |
| GTCTCTGAACAATTGCTAGA+TGG | 0.431183 | 5_2:+49210221 | None:intergenic |
| AAAAGCCTTCTTTGTGGGTC+AGG | 0.435149 | 5_2:+49210539 | Msa0773850:CDS |
| TATGCAAAAGCCTTCTTTGT+GGG | 0.462187 | 5_2:+49210534 | Msa0773850:CDS |
| AAAAGTAGCTATGGAAGAGA+TGG | 0.471774 | 5_2:+49210404 | Msa0773850:exon |
| TAAGGCAATAAAAGTAGCTA+TGG | 0.496433 | 5_2:+49210395 | Msa0773850:exon |
| ATATGCAAAAGCCTTCTTTG+TGG | 0.519860 | 5_2:+49210533 | Msa0773850:CDS |
| AATTACCTGACCCACAAAGA+AGG | 0.535666 | 5_2:-49210544 | None:intergenic |
| TTTCTATAAAAGAAGGACAA+TGG | 0.565158 | 5_2:+49210305 | Msa0773850:five_prime_UTR |
| AAAGTAGCTATGGAAGAGAT+GGG | 0.580832 | 5_2:+49210405 | Msa0773850:exon |
| TGTCTGGACACACACAAACA+AGG | 0.587340 | 5_2:+49210354 | Msa0773850:five_prime_UTR |
| GGCTTCAAAGAAACAAGTTG+AGG | 0.622095 | 5_2:+49210732 | Msa0773850:CDS |
| AGCAAGTGAAGCTGAACTTG+AGG | 0.634101 | 5_2:+49210711 | Msa0773850:CDS |
| GTCTGGACACACACAAACAA+GGG | 0.643617 | 5_2:+49210355 | Msa0773850:five_prime_UTR |
| AGAATCTTAGAAGACTTACA+AGG | 0.654761 | 5_2:-49210265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATTTTTCTATAAAAGA+AGG | + | chr5_2:49210298-49210317 | Msa0773850:five_prime_UTR | 15.0% |
| !! | AAAAATTTCTTGTATAGAAA+CGG | - | chr5_2:49210511-49210530 | None:intergenic | 15.0% |
| !! | CATTAATTTAATTAACTATG+AGG | - | chr5_2:49210799-49210818 | None:intergenic | 15.0% |
| !! | GATATATATTTCATCTCTTA+AGG | + | chr5_2:49210377-49210396 | Msa0773850:five_prime_UTR | 20.0% |
| ! | TTTCTATAAAAGAAGGACAA+TGG | + | chr5_2:49210305-49210324 | Msa0773850:five_prime_UTR | 25.0% |
| !!! | AAAGAAGTTTTGTTGTGATT+TGG | - | chr5_2:49210453-49210472 | None:intergenic | 25.0% |
| !! | AATCACAACAAAACTTCTTT+TGG | + | chr5_2:49210453-49210472 | Msa0773850:CDS | 25.0% |
| ! | AAATAAGTAGTAGCGAAAAA+TGG | - | chr5_2:49210593-49210612 | None:intergenic | 25.0% |
| ! | TATAACTGCAAAAAATGAGA+AGG | + | chr5_2:49210687-49210706 | Msa0773850:CDS | 25.0% |
| AGAATCTTAGAAGACTTACA+AGG | - | chr5_2:49210268-49210287 | None:intergenic | 30.0% | |
| GTATCTTCATATTGTTTGTC+TGG | + | chr5_2:49210338-49210357 | Msa0773850:five_prime_UTR | 30.0% | |
| TAAGGCAATAAAAGTAGCTA+TGG | + | chr5_2:49210395-49210414 | Msa0773850:exon | 30.0% | |
| TGTGGTGTGGAAAAAAAAAT+AGG | + | chr5_2:49210657-49210676 | Msa0773850:intron | 30.0% | |
| AAAAGAAAAACACTTGCATG+AGG | - | chr5_2:49210896-49210915 | None:intergenic | 30.0% | |
| ! | ATGCAAGTGTTTTTCTTTTC+TGG | + | chr5_2:49210897-49210916 | Msa0773850:three_prime_UTR | 30.0% |
| AAAAGTAGCTATGGAAGAGA+TGG | + | chr5_2:49210404-49210423 | Msa0773850:exon | 35.0% | |
| AAAGTAGCTATGGAAGAGAT+GGG | + | chr5_2:49210405-49210424 | Msa0773850:exon | 35.0% | |
| ATATGCAAAAGCCTTCTTTG+TGG | + | chr5_2:49210533-49210552 | Msa0773850:CDS | 35.0% | |
| TATGCAAAAGCCTTCTTTGT+GGG | + | chr5_2:49210534-49210553 | Msa0773850:CDS | 35.0% | |
| !! | AAATGGAAAGGGGTTGTTTT+TGG | - | chr5_2:49210576-49210595 | None:intergenic | 35.0% |
| TAGTAGCGAAAAATGGAAAG+GGG | - | chr5_2:49210586-49210605 | None:intergenic | 35.0% | |
| GTAGTAGCGAAAAATGGAAA+GGG | - | chr5_2:49210587-49210606 | None:intergenic | 35.0% | |
| AGTAGTAGCGAAAAATGGAA+AGG | - | chr5_2:49210588-49210607 | None:intergenic | 35.0% | |
| !! | GAAATTGCCTTGTTTGATTG+AGG | + | chr5_2:49210631-49210650 | Msa0773850:intron | 35.0% |
| CACAATTCCTCAATCAAACA+AGG | - | chr5_2:49210641-49210660 | None:intergenic | 35.0% | |
| CTTGTTTGATTGAGGAATTG+TGG | + | chr5_2:49210639-49210658 | Msa0773850:intron | 35.0% | |
| CTGCTGAACATATCAAGAAT+AGG | + | chr5_2:49210764-49210783 | Msa0773850:CDS | 35.0% | |
| AATTACCTGACCCACAAAGA+AGG | - | chr5_2:49210547-49210566 | None:intergenic | 40.0% | |
| TTGATTGAGGAATTGTGGTG+TGG | + | chr5_2:49210644-49210663 | Msa0773850:intron | 40.0% | |
| GGCTTCAAAGAAACAAGTTG+AGG | + | chr5_2:49210732-49210751 | Msa0773850:CDS | 40.0% | |
| TGTCTGGACACACACAAACA+AGG | + | chr5_2:49210354-49210373 | Msa0773850:five_prime_UTR | 45.0% | |
| GTCTGGACACACACAAACAA+GGG | + | chr5_2:49210355-49210374 | Msa0773850:five_prime_UTR | 45.0% | |
| AAAAGCCTTCTTTGTGGGTC+AGG | + | chr5_2:49210539-49210558 | Msa0773850:CDS | 45.0% | |
| AGCAAGTGAAGCTGAACTTG+AGG | + | chr5_2:49210711-49210730 | Msa0773850:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 49210224 | 49210957 | 49210224 | ID=Msa0773850;Name=Msa0773850 |
| chr5_2 | mRNA | 49210224 | 49210957 | 49210224 | ID=Msa0773850-mRNA-1;Parent=Msa0773850;Name=Msa0773850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=190|1|1|1|1|1|2|150|91 |
| chr5_2 | exon | 49210224 | 49210560 | 49210224 | ID=Msa0773850-mRNA-1:exon:14752;Parent=Msa0773850-mRNA-1 |
| chr5_2 | exon | 49210679 | 49210957 | 49210679 | ID=Msa0773850-mRNA-1:exon:14753;Parent=Msa0773850-mRNA-1 |
| chr5_2 | five_prime_UTR | 49210224 | 49210413 | 49210224 | ID=Msa0773850-mRNA-1:five_prime_utr;Parent=Msa0773850-mRNA-1 |
| chr5_2 | CDS | 49210414 | 49210560 | 49210414 | ID=Msa0773850-mRNA-1:cds;Parent=Msa0773850-mRNA-1 |
| chr5_2 | CDS | 49210679 | 49210807 | 49210679 | ID=Msa0773850-mRNA-1:cds;Parent=Msa0773850-mRNA-1 |
| chr5_2 | three_prime_UTR | 49210808 | 49210957 | 49210808 | ID=Msa0773850-mRNA-1:three_prime_utr;Parent=Msa0773850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
