AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1141210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141210 MtrunA17_Chr7g0223961 94.444 324 7 1 1 313 125 448 0.0 632
Msa1141210 MtrunA17_Chr4g0043511 49.412 340 143 6 1 312 164 502 6.32e-111 332
Msa1141210 MtrunA17_Chr3g0144531 42.771 332 162 6 1 312 130 453 4.07e-94 286
Msa1141210 MtrunA17_Chr4g0034901 43.598 328 167 7 1 311 131 457 1.42e-93 285
Msa1141210 MtrunA17_Chr1g0146831 58.937 207 83 2 2 206 134 340 5.93e-85 260
Msa1141210 MtrunA17_Chr6g0487261 40.373 322 176 7 5 311 132 452 5.82e-75 238
Msa1141210 MtrunA17_Chr5g0439251 40.483 331 169 7 5 307 130 460 1.62e-74 236
Msa1141210 MtrunA17_Chr8g0389741 39.812 319 179 6 5 311 133 450 2.48e-74 236
Msa1141210 MtrunA17_Chr1g0177171 36.416 346 181 7 5 311 143 488 6.58e-71 228
Msa1141210 MtrunA17_Chr1g0161011 39.498 319 179 8 5 312 129 444 1.02e-64 211
Msa1141210 MtrunA17_Chr3g0110371 37.500 320 186 8 3 311 127 443 1.84e-64 211
Msa1141210 MtrunA17_Chr4g0075031 35.849 318 192 7 5 312 150 465 3.26e-62 206
Msa1141210 MtrunA17_Chr8g0378621 36.164 318 192 6 5 312 131 447 3.79e-61 202
Msa1141210 MtrunA17_Chr3g0121271 34.483 319 196 8 3 311 129 444 9.06e-60 199
Msa1141210 MtrunA17_Chr1g0189111 46.948 213 105 6 1 207 132 342 2.50e-59 195
Msa1141210 MtrunA17_Chr5g0434591 35.000 320 194 8 3 311 126 442 4.10e-58 194
Msa1141210 MtrunA17_Chr4g0026321 46.009 213 108 5 1 207 130 341 1.12e-57 190
Msa1141210 MtrunA17_Chr1g0155001 43.662 213 112 4 1 206 126 337 2.31e-56 187
Msa1141210 MtrunA17_Chr4g0043851 45.755 212 108 4 1 206 133 343 8.20e-56 186
Msa1141210 MtrunA17_Chr7g0234821 37.117 326 187 8 5 312 132 457 5.65e-55 185
Msa1141210 MtrunA17_Chr2g0321511 42.584 209 113 5 5 207 132 339 9.98e-54 180
Msa1141210 MtrunA17_Chr4g0046311 33.537 328 193 8 1 307 128 451 1.63e-53 181
Msa1141210 MtrunA17_Chr3g0119541 43.290 231 125 3 5 229 131 361 4.23e-53 177
Msa1141210 MtrunA17_Chr8g0339191 34.056 323 198 8 5 312 135 457 1.15e-51 176
Msa1141210 MtrunA17_Chr2g0285901 43.128 211 114 4 1 206 125 334 6.08e-50 170
Msa1141210 MtrunA17_Chr7g0250301 40.097 207 115 6 5 207 111 312 6.09e-46 158
Msa1141210 MtrunA17_Chr4g0064021 38.942 208 120 5 5 206 132 338 1.27e-44 156
Msa1141210 MtrunA17_Chr4g0003281 40.476 210 118 5 3 206 144 352 2.46e-44 155
Msa1141210 MtrunA17_Chr4g0039021 41.294 201 105 6 8 203 89 281 2.65e-44 153
Msa1141210 MtrunA17_Chr4g0038941 40.097 207 113 6 5 208 154 352 1.56e-42 150
Msa1141210 MtrunA17_Chr4g0039011 37.799 209 115 7 5 208 145 343 2.03e-40 144
Msa1141210 MtrunA17_Chr4g0062771 31.595 326 193 15 6 312 141 455 7.52e-40 145
Msa1141210 MtrunA17_Chr3g0129341 31.269 323 201 14 2 311 139 453 2.19e-39 144
Msa1141210 MtrunA17_Chr1g0174261 40.777 206 109 8 5 204 77 275 3.71e-39 140
Msa1141210 MtrunA17_Chr4g0038981 39.234 209 111 9 5 208 126 323 4.26e-39 140
Msa1141210 MtrunA17_Chr2g0306311 32.407 324 192 15 6 311 165 479 5.57e-39 143
Msa1141210 MtrunA17_Chr4g0039071 39.024 205 114 7 5 204 130 328 8.20e-39 140
Msa1141210 MtrunA17_Chr4g0038961 39.234 209 111 7 5 208 126 323 2.82e-38 138
Msa1141210 MtrunA17_Chr7g0253091 34.650 329 177 16 7 312 136 449 5.87e-37 137
Msa1141210 MtrunA17_Chr4g0038971 38.389 211 114 8 3 208 124 323 6.01e-37 134
Msa1141210 MtrunA17_Chr6g0461601 32.938 337 172 18 7 311 137 451 3.18e-36 135
Msa1141210 MtrunA17_Chr1g0148391 32.399 321 192 15 6 311 136 446 1.96e-35 133
Msa1141210 MtrunA17_Chr4g0076581 29.630 324 202 15 5 312 142 455 2.83e-35 133
Msa1141210 MtrunA17_Chr2g0294601 39.024 205 112 9 5 204 166 362 2.50e-34 129
Msa1141210 MtrunA17_Chr4g0069801 29.283 321 201 16 2 307 134 443 4.25e-33 127
Msa1141210 MtrunA17_Chr2g0294591 38.350 206 112 10 5 204 137 333 1.29e-32 124
Msa1141210 MtrunA17_Chr8g0383311 30.625 320 198 15 7 311 154 464 1.49e-32 125
Msa1141210 MtrunA17_Chr2g0290821 30.282 284 177 12 41 312 175 449 3.84e-32 124
Msa1141210 MtrunA17_Chr5g0436361 37.089 213 124 5 2 208 139 347 5.98e-32 122
Msa1141210 MtrunA17_Chr3g0138741 29.283 321 205 14 6 312 141 453 3.93e-31 122
Msa1141210 MtrunA17_Chr7g0250321 38.217 157 89 5 8 160 134 286 5.89e-26 104
Msa1141210 MtrunA17_Chr1g0154991 46.000 100 51 1 212 311 5 101 1.19e-25 98.6
Msa1141210 MtrunA17_Chr3g0105981 31.481 270 145 15 46 295 178 427 3.08e-24 102
Msa1141210 MtrunA17_Chr8g0378361 48.193 83 43 0 229 311 29 111 6.73e-22 90.9
Msa1141210 MtrunA17_Chr8g0378381 44.048 84 47 0 229 312 31 114 2.11e-20 84.7
Msa1141210 MtrunA17_Chr8g0378401 44.444 81 45 0 229 309 31 111 1.39e-19 82.8
Msa1141210 MtrunA17_Chr5g0443331 39.496 119 65 4 200 312 73 190 3.17e-18 82.8
Msa1141210 MtrunA17_Chr2g0313891 45.783 83 44 1 229 311 29 110 3.33e-18 79.0
Msa1141210 MtrunA17_Chr4g0040911 41.176 85 49 1 230 313 37 121 5.51e-17 77.4
Msa1141210 MtrunA17_Chr3g0120401 36.782 87 55 0 225 311 152 238 1.40e-16 77.8
Msa1141210 MtrunA17_Chr8g0378371 43.373 83 44 1 229 311 32 111 1.70e-16 74.3
Msa1141210 MtrunA17_Chr4g0061401 35.870 92 58 1 220 311 14 104 3.63e-16 76.3
Msa1141210 MtrunA17_Chr3g0096451 35.593 118 70 3 200 312 78 194 4.49e-16 76.6
Msa1141210 MtrunA17_Chr4g0018771 41.379 87 47 2 118 204 86 168 1.89e-14 71.2
Msa1141210 MtrunA17_Chr1g0213651 36.364 88 56 0 225 312 271 358 4.54e-14 72.0
Msa1141210 MtrunA17_Chr4g0018861 43.373 83 43 2 122 204 88 166 5.72e-14 70.1
Msa1141210 MtrunA17_Chr1g0193131 41.772 79 45 1 229 307 419 496 6.40e-14 72.4
Msa1141210 MtrunA17_Chr8g0381081 36.905 84 52 1 229 311 56 139 7.75e-14 68.6
Msa1141210 MtrunA17_Chr2g0304061 38.095 84 51 1 230 313 158 240 6.28e-13 68.6
Msa1141210 MtrunA17_Chr7g0271411 39.759 83 48 2 230 311 160 241 9.77e-13 67.8
Msa1141210 MtrunA17_Chr5g0401301 35.398 113 57 4 203 312 314 413 7.06e-12 65.9
Msa1141210 MtrunA17_Chr5g0447651 29.167 96 67 1 218 312 18 113 2.59e-11 60.1
Msa1141210 MtrunA17_Chr2g0294581 40.659 91 47 5 115 204 190 274 3.71e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1141210 AT3G55430.1 56.037 323 127 7 1 312 130 448 4.82e-120 352
Msa1141210 AT5G24318.1 49.846 325 148 5 1 312 132 454 1.23e-111 331
Msa1141210 AT5G24318.2 49.536 323 148 5 1 310 132 452 1.20e-109 326
Msa1141210 AT5G24318.3 49.527 317 145 5 9 312 1 315 1.05e-108 319
Msa1141210 AT2G39640.1 48.903 319 150 6 1 313 131 442 7.69e-103 312
Msa1141210 AT2G39640.1 47.674 86 45 0 228 313 458 543 5.47e-24 102
Msa1141210 AT2G16230.1 44.099 322 168 5 1 311 127 447 2.29e-94 288
Msa1141210 AT4G34480.3 44.201 319 169 5 1 311 17 334 2.34e-88 270
Msa1141210 AT4G34480.1 44.201 319 169 5 1 311 128 445 5.84e-87 270
Msa1141210 AT5G24318.4 54.545 209 93 2 1 207 132 340 5.84e-79 245
Msa1141210 AT5G55180.1 40.923 325 174 7 5 312 132 455 2.33e-78 246
Msa1141210 AT2G05790.1 40.533 338 171 7 5 312 130 467 7.15e-78 245
Msa1141210 AT5G55180.2 41.433 321 170 7 5 308 132 451 2.62e-77 243
Msa1141210 AT4G26830.2 39.752 322 180 6 5 312 133 454 4.65e-77 243
Msa1141210 AT4G26830.1 39.752 322 180 6 5 312 129 450 5.48e-77 243
Msa1141210 AT3G46570.1 53.810 210 93 4 1 207 130 338 4.68e-68 216
Msa1141210 AT5G56590.1 37.695 321 185 7 5 311 132 451 8.28e-65 212
Msa1141210 AT2G01630.1 37.107 318 186 8 5 311 128 442 3.38e-64 211
Msa1141210 AT2G01630.3 37.261 314 183 8 5 307 128 438 5.36e-64 208
Msa1141210 AT1G11820.2 35.331 317 193 6 5 311 149 463 1.95e-62 206
Msa1141210 AT4G29360.1 35.632 348 180 9 4 311 130 473 8.68e-61 202
Msa1141210 AT1G32860.1 47.642 212 102 6 1 204 130 340 1.06e-60 199
Msa1141210 AT4G29360.2 35.632 348 180 9 4 311 140 483 1.08e-60 202
Msa1141210 AT1G11820.3 35.144 313 191 6 5 307 149 459 2.76e-60 200
Msa1141210 AT3G13560.4 34.906 318 192 8 5 311 131 444 5.25e-60 200
Msa1141210 AT3G13560.1 34.906 318 192 8 5 311 131 444 5.25e-60 200
Msa1141210 AT3G13560.2 34.906 318 192 8 5 311 131 444 5.25e-60 200
Msa1141210 AT3G13560.5 34.906 318 192 8 5 311 131 444 5.25e-60 200
Msa1141210 AT3G13560.3 34.906 318 192 8 5 311 131 444 5.25e-60 200
Msa1141210 AT1G30080.2 49.048 210 100 5 1 204 137 345 1.43e-59 195
Msa1141210 AT1G30080.1 49.048 210 100 5 1 204 137 345 3.94e-59 195
Msa1141210 AT1G66250.1 35.331 317 192 8 5 311 137 450 1.45e-58 196
Msa1141210 AT3G23770.1 37.117 326 186 7 5 312 146 470 1.87e-58 195
Msa1141210 AT4G14080.1 36.196 326 189 8 5 312 148 472 2.00e-57 192
Msa1141210 AT5G42720.1 46.009 213 107 4 1 206 128 339 3.31e-57 191
Msa1141210 AT2G27500.3 43.192 213 114 5 1 207 53 264 1.32e-55 183
Msa1141210 AT2G27500.2 43.192 213 114 5 1 207 131 342 2.59e-55 184
Msa1141210 AT2G27500.1 43.192 213 114 5 1 207 131 342 7.55e-55 183
Msa1141210 AT4G34480.2 45.755 212 108 4 1 206 128 338 3.72e-54 181
Msa1141210 AT3G07320.1 33.945 327 194 10 5 312 131 454 5.03e-49 170
Msa1141210 AT2G01630.2 37.358 265 152 8 5 258 128 389 8.44e-49 167
Msa1141210 AT4G18340.2 42.925 212 114 5 1 206 135 345 1.49e-48 167
Msa1141210 AT5G42100.2 44.907 216 109 7 1 207 128 342 1.65e-48 167
Msa1141210 AT4G18340.1 42.925 212 114 5 1 206 135 345 3.35e-48 166
Msa1141210 AT5G42100.1 44.907 216 109 7 1 207 128 342 3.37e-48 167
Msa1141210 AT3G15800.1 41.346 208 115 4 3 204 148 354 6.60e-48 165
Msa1141210 AT2G26600.2 38.647 207 120 5 4 204 45 250 3.42e-46 158
Msa1141210 AT2G26600.1 38.647 207 120 5 4 204 139 344 5.94e-45 157
Msa1141210 AT1G11820.1 37.736 212 122 4 5 207 149 359 1.37e-42 151
Msa1141210 AT3G57270.1 39.524 210 115 7 5 208 131 334 1.12e-41 147
Msa1141210 AT3G24330.1 33.333 327 186 15 6 312 149 463 2.66e-41 150
Msa1141210 AT4G16260.2 41.429 210 111 8 5 208 97 300 6.25e-41 145
Msa1141210 AT4G16260.1 41.429 210 111 8 5 208 126 329 1.26e-40 145
Msa1141210 AT3G61810.1 37.915 211 107 6 5 201 159 359 5.85e-39 141
Msa1141210 AT5G20390.1 39.904 208 115 8 5 207 137 339 7.32e-39 140
Msa1141210 AT5G20870.1 33.934 333 188 17 2 312 136 458 8.81e-39 143
Msa1141210 AT5G20330.1 38.462 208 118 8 5 207 138 340 1.59e-37 137
Msa1141210 AT1G77780.1 39.216 204 116 6 8 207 129 328 2.55e-36 134
Msa1141210 AT5G64790.1 29.938 324 205 13 2 311 134 449 3.89e-36 135
Msa1141210 AT3G57260.1 38.235 204 114 7 5 204 134 329 5.38e-36 132
Msa1141210 AT5G18220.1 31.193 327 192 15 7 311 138 453 9.38e-36 135
Msa1141210 AT3G57260.2 38.235 204 114 7 5 204 150 345 9.89e-36 132
Msa1141210 AT3G57240.1 38.498 213 111 10 5 210 138 337 1.22e-35 132
Msa1141210 AT5G20340.1 36.765 204 120 7 5 204 147 345 5.06e-35 130
Msa1141210 AT5G58480.1 31.692 325 188 15 5 312 136 443 8.84e-35 132
Msa1141210 AT5G58090.1 31.077 325 192 15 7 312 133 444 2.11e-34 131
Msa1141210 AT1G64760.1 33.537 328 181 19 7 312 135 447 4.19e-34 130
Msa1141210 AT1G64760.2 33.537 328 181 19 7 312 135 447 4.19e-34 130
Msa1141210 AT1G33220.1 39.267 191 108 6 5 191 138 324 2.53e-33 125
Msa1141210 AT4G17180.1 28.743 334 189 12 5 312 129 439 1.12e-32 126
Msa1141210 AT4G31140.1 29.467 319 205 15 6 312 137 447 1.18e-32 126
Msa1141210 AT3G04010.1 30.864 324 194 15 7 311 143 455 3.00e-32 125
Msa1141210 AT2G19440.2 33.131 329 181 19 7 312 131 443 3.91e-32 124
Msa1141210 AT2G19440.1 33.131 329 181 19 7 312 131 443 3.91e-32 124
Msa1141210 AT1G77790.1 34.300 207 124 7 8 207 136 337 3.23e-29 114
Msa1141210 AT3G55780.1 35.514 214 123 6 5 208 140 348 7.29e-29 114
Msa1141210 AT5G20560.1 39.286 168 94 6 40 203 173 336 1.05e-28 113
Msa1141210 AT4G09462.1 53.012 83 39 0 229 311 28 110 7.29e-25 97.1
Msa1141210 AT4G09090.1 52.439 82 39 0 230 311 31 112 3.41e-24 95.5
Msa1141210 AT4G09465.1 51.807 83 40 0 229 311 30 112 3.63e-24 95.1
Msa1141210 AT4G09464.1 51.807 83 40 0 229 311 30 112 4.07e-24 95.1
Msa1141210 AT4G09467.1 51.807 83 40 0 229 311 30 112 4.07e-24 95.1
Msa1141210 AT4G09466.1 51.807 83 40 0 229 311 30 112 1.76e-23 93.6
Msa1141210 AT5G63225.1 51.220 82 40 0 230 311 25 106 3.02e-23 92.8
Msa1141210 AT2G43670.1 44.681 94 51 1 218 311 23 115 3.36e-23 92.8
Msa1141210 AT5G63230.1 51.220 82 40 0 230 311 26 107 2.11e-22 90.5
Msa1141210 AT1G78520.1 48.352 91 46 1 221 311 23 112 4.22e-22 89.7
Msa1141210 AT5G63250.1 48.276 87 42 1 228 311 40 126 2.65e-20 85.5
Msa1141210 AT5G63240.1 45.977 87 44 1 228 311 38 124 3.45e-20 85.1
Msa1141210 AT4G13600.1 42.683 82 47 0 230 311 61 142 1.32e-19 86.3
Msa1141210 AT1G66855.1 43.529 85 47 1 229 312 25 109 1.90e-19 82.4
Msa1141210 AT5G53610.1 43.373 83 46 1 230 312 28 109 1.79e-18 79.7
Msa1141210 AT1G66870.2 41.667 84 48 1 229 311 52 135 2.51e-18 80.5
Msa1141210 AT4G16165.1 47.619 84 43 1 229 311 25 108 2.56e-18 79.3
Msa1141210 AT5G53600.1 43.373 83 46 1 229 311 28 109 3.20e-18 79.3
Msa1141210 AT1G66870.1 41.667 84 48 1 229 311 25 108 4.31e-18 79.0
Msa1141210 AT5G67460.1 33.333 120 73 3 195 312 262 376 1.19e-17 83.2
Msa1141210 AT1G18650.1 36.905 84 53 0 228 311 19 102 6.94e-17 77.8
Msa1141210 AT1G18650.2 36.905 84 53 0 228 311 19 102 1.02e-16 75.9
Msa1141210 AT2G43660.1 44.318 88 48 1 225 311 29 116 2.23e-16 74.7
Msa1141210 AT2G43660.2 44.318 88 48 1 225 311 30 117 2.41e-16 74.3
Msa1141210 AT4G05430.3 34.259 108 59 2 216 311 23 130 2.75e-16 75.5
Msa1141210 AT3G28250.1 44.304 79 43 1 230 308 3 80 2.78e-16 74.3
Msa1141210 AT3G58100.1 39.286 84 50 1 230 312 41 124 5.82e-16 75.1
Msa1141210 AT3G58100.2 39.286 84 50 1 230 312 117 200 1.65e-15 75.5
Msa1141210 AT5G67460.2 33.043 115 70 3 195 307 262 371 2.44e-15 76.3
Msa1141210 AT1G66852.1 40.476 84 48 2 229 311 25 107 5.16e-15 70.5
Msa1141210 AT5G61130.1 36.145 83 53 0 229 311 20 102 5.62e-15 72.8
Msa1141210 AT2G30933.1 40.449 89 51 2 225 312 77 164 6.20e-15 73.2
Msa1141210 AT4G05430.2 34.615 104 56 2 216 307 23 126 7.05e-15 70.5
Msa1141210 AT2G29735.1 40.476 84 48 1 230 311 31 114 7.68e-15 70.1
Msa1141210 AT2G30933.2 41.667 84 47 2 225 307 77 159 1.50e-14 70.5
Msa1141210 AT2G30933.3 41.667 84 47 2 225 307 77 159 1.50e-14 70.5
Msa1141210 AT1G09460.1 41.111 90 51 2 222 311 129 216 2.35e-14 73.2
Msa1141210 AT4G05430.1 33.010 103 57 2 221 311 3 105 2.78e-14 69.3
Msa1141210 AT1G79480.2 35.955 89 57 0 225 313 305 393 3.87e-14 72.8
Msa1141210 AT1G79480.1 35.955 89 57 0 225 313 306 394 3.96e-14 72.8
Msa1141210 AT5G08000.2 37.349 83 52 0 229 311 39 121 4.10e-14 70.5
Msa1141210 AT5G08000.1 37.349 83 52 0 229 311 20 102 5.59e-14 69.7
Msa1141210 AT1G29380.1 38.372 86 47 3 230 312 148 230 6.45e-13 68.6
Msa1141210 AT1G29380.3 37.931 87 48 3 230 313 148 231 7.81e-13 67.8
Msa1141210 AT2G04910.2 32.967 91 60 1 224 313 9 99 1.31e-12 63.5
Msa1141210 AT1G29380.4 39.506 81 43 3 230 307 148 225 5.50e-12 64.7
Msa1141210 AT1G29380.2 39.506 81 43 3 230 307 148 225 5.50e-12 64.7
Msa1141210 AT2G42930.1 35.714 84 53 1 225 308 35 117 9.74e-12 62.0

Find 102 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGCGAAGTTCACGTTCTT+TGG 0.178825 7_4:-14291683 None:intergenic
GTCCGATTGCTGAGCGTAAT+TGG 0.192495 7_4:+14292014 Msa1141210:CDS
AAACCAATTCGACGCTTTAA+TGG 0.194075 7_4:+14291757 Msa1141210:CDS
TTTGGATTGTAACCGAAATA+TGG 0.268251 7_4:-14291665 None:intergenic
GCTTTGCTGCCAACAACCTT+AGG 0.275741 7_4:+14293434 Msa1141210:CDS
TCTGAATAGAAGAGGGAAAA+TGG 0.283861 7_4:+14293949 Msa1141210:three_prime_UTR
TGAGGGTATTAATGATATTA+AGG 0.288215 7_4:+14290329 Msa1141210:CDS
CTTGGTCGTACGGGTGTTAC+TGG 0.301542 7_4:-14293289 None:intergenic
GTTAACCCCTATCCATATTT+CGG 0.312701 7_4:+14291653 Msa1141210:CDS
AACTGTGACTTCTCTAACTC+TGG 0.316592 7_4:+14293514 Msa1141210:CDS
GCCTTCAGTTTGTGATGGTT+GGG 0.317594 7_4:+14291850 Msa1141210:CDS
TGTGTTGATTATTGTATATT+AGG 0.328811 7_4:+14294040 Msa1141210:three_prime_UTR
TCCGATTGCTGAGCGTAATT+GGG 0.332476 7_4:+14292015 Msa1141210:CDS
TTGGTAGTGAAGTTCTTCAT+TGG 0.334523 7_4:+14290241 Msa1141210:five_prime_UTR
GGCCTTCAGTTTGTGATGGT+TGG 0.349760 7_4:+14291849 Msa1141210:CDS
GACATTGCAGTTGGCGAAAC+AGG 0.359717 7_4:+14291824 Msa1141210:CDS
GCGTTGCTTGCATCCGGCTT+CGG 0.362697 7_4:-14293337 None:intergenic
GTTATAATGGTGAGTTGATC+AGG 0.372158 7_4:+14291900 Msa1141210:CDS
TGCCATGAATGCTTACTATC+AGG 0.376391 7_4:+14293471 Msa1141210:CDS
CGCTGTTTATTCAGCAATGA+AGG 0.376856 7_4:+14291781 Msa1141210:CDS
CGTCCATTAAAGCGTCGAAT+TGG 0.381101 7_4:-14291760 None:intergenic
CTTTGCTGCCAACAACCTTA+GGG 0.387287 7_4:+14293435 Msa1141210:CDS
GCAATGAAGGGACTTGGTTT+CGG 0.391799 7_4:+14291794 Msa1141210:CDS
AGAAACAAGAACACCATTCA+TGG 0.399464 7_4:+14291631 Msa1141210:CDS
TGGTAGTGAAGTTCTTCATT+GGG 0.406037 7_4:+14290242 Msa1141210:five_prime_UTR
AATGCTTACTATCAGGCTAA+TGG 0.406232 7_4:+14293478 Msa1141210:CDS
AACTGCAGGCCTTGGTCGTA+CGG 0.407573 7_4:-14293299 None:intergenic
AGCCTGATAGTAAGCATTCA+TGG 0.410992 7_4:-14293473 None:intergenic
TGGTGAGTTGATCAGGCATT+TGG 0.413738 7_4:+14291907 Msa1141210:CDS
TTGGTTTGTGTACCTTAGTT+TGG 0.417725 7_4:-14291741 None:intergenic
AGCGTAATTGGGGTCTCTTT+CGG 0.417931 7_4:+14292026 Msa1141210:CDS
AATCTAAGCATGTTTCTTGA+AGG 0.425095 7_4:+14293893 Msa1141210:exon
CATTCTGCTCTTGTTGCTGA+GGG 0.427143 7_4:+14290312 Msa1141210:CDS
TTGATCAGGCATTTGGAGGC+AGG 0.429884 7_4:+14291914 Msa1141210:CDS
CGTACGGGTGTTACTGGTCT+TGG 0.431663 7_4:-14293283 None:intergenic
CAAACTCCTCCTGGTTGGAT+TGG 0.434047 7_4:-14293412 None:intergenic
AAAGTCTCAAACCTCCTGTT+TGG 0.438173 7_4:-14291956 None:intergenic
TTTAATCTAATGCTCGTTTG+TGG 0.447652 7_4:+14294102 Msa1141210:three_prime_UTR
AACGCTGCGTTGCTTGCATC+CGG 0.448200 7_4:-14293343 None:intergenic
CTTAGATTCTACAATTATCA+TGG 0.451268 7_4:-14293878 None:intergenic
CTTGGTTGTACCGGTGCTAC+TGG 0.460537 7_4:-14293265 None:intergenic
TCTCTTAGAAATTTCAGCAT+TGG 0.463504 7_4:-14291611 None:intergenic
CAGCTCCCAACTGCAGGCCT+TGG 0.465067 7_4:-14293307 None:intergenic
GGACACCGTTGATGCCAAAC+AGG 0.470989 7_4:+14291942 Msa1141210:CDS
TATTCAGCAATGAAGGGACT+TGG 0.471139 7_4:+14291788 Msa1141210:CDS
CCCCAATTACGCTCAGCAAT+CGG 0.471549 7_4:-14292016 None:intergenic
GCGAATGCTCAGAGTTATAA+TGG 0.476931 7_4:+14291887 Msa1141210:CDS
CTTGAAGGTCATAATCAGAA+AGG 0.478799 7_4:+14293908 Msa1141210:three_prime_UTR
AGGCATTTGGAGGCAGGGAG+AGG 0.482036 7_4:+14291920 Msa1141210:CDS
TACGACCAAGGCCTGCAGTT+GGG 0.482151 7_4:+14293302 Msa1141210:CDS
TCATAAACAGGAGAGAAATC+AGG 0.484236 7_4:-14292049 None:intergenic
GAATGAAGAGTTCTCATAGC+AGG 0.487857 7_4:-14290294 None:intergenic
TTGTAACCGAAATATGGATA+GGG 0.488034 7_4:-14291659 None:intergenic
TCATTCTGCTCTTGTTGCTG+AGG 0.488759 7_4:+14290311 Msa1141210:CDS
CAAGGCCTGCAGTTGGGAGC+TGG 0.494783 7_4:+14293308 Msa1141210:CDS
GGCAAGAGCCCTAAGGTTGT+TGG 0.496278 7_4:-14293443 None:intergenic
TCTAAGCATCTGAATAGAAG+AGG 0.499159 7_4:+14293941 Msa1141210:three_prime_UTR
GGATAGGGGTTAACCATGAA+TGG 0.501596 7_4:-14291644 None:intergenic
GCAGCAAAGCAAACTCCTCC+TGG 0.502477 7_4:-14293421 None:intergenic
AACCTCCTGTTTGGCATCAA+CGG 0.506938 7_4:-14291947 None:intergenic
TTAATATTAACATTAGTATG+TGG 0.507538 7_4:+14294154 Msa1141210:three_prime_UTR
GGCATTTGGAGGCAGGGAGA+GGG 0.508156 7_4:+14291921 Msa1141210:CDS
ACACACCAGCTCCCAACTGC+AGG 0.509757 7_4:-14293313 None:intergenic
ACTGCAGGCCTTGGTCGTAC+GGG 0.514469 7_4:-14293298 None:intergenic
GAGCTGGTGTGTGCCGAAGC+CGG 0.520619 7_4:+14293324 Msa1141210:CDS
TTGCAGTTGGCGAAACAGGC+TGG 0.520947 7_4:+14291828 Msa1141210:CDS
CAAACCGTGGACTGTTCGAC+AGG 0.528074 7_4:+14291714 Msa1141210:CDS
ATTGTAACCGAAATATGGAT+AGG 0.532142 7_4:-14291660 None:intergenic
GGCTGGCCTTCAGTTTGTGA+TGG 0.535181 7_4:+14291845 Msa1141210:CDS
TGAGTTGATCAGGCATTTGG+AGG 0.536507 7_4:+14291910 Msa1141210:CDS
TTTAATGAAAATCAGAAACC+TGG 0.540371 7_4:+14291992 Msa1141210:CDS
CTGTCGAACAGTCCACGGTT+TGG 0.541850 7_4:-14291713 None:intergenic
GTTACTGGTCTTGGTTGTAC+CGG 0.547262 7_4:-14293274 None:intergenic
GTACGACCAAGGCCTGCAGT+TGG 0.547799 7_4:+14293301 Msa1141210:CDS
TTACGCTCAGCAATCGGACC+AGG 0.548490 7_4:-14292010 None:intergenic
CAAAGCAAACTCCTCCTGGT+TGG 0.554000 7_4:-14293417 None:intergenic
GGTGACGTGGACATTGCAGT+TGG 0.561014 7_4:+14291815 Msa1141210:CDS
GGGACTTGGTTTCGGTGACG+TGG 0.563795 7_4:+14291802 Msa1141210:CDS
TGATCAGGCATTTGGAGGCA+GGG 0.570207 7_4:+14291915 Msa1141210:CDS
GAGGGAAAATGGAGTGAATG+TGG 0.575009 7_4:+14293960 Msa1141210:three_prime_UTR
GGTGATGCTAATATGATTCG+TGG 0.580324 7_4:+14290264 Msa1141210:exon
TTAGAGAAGTCACAGTTGAA+AGG 0.580468 7_4:-14293508 None:intergenic
CATAAGTGGCAAGAGCCCTA+AGG 0.586670 7_4:-14293450 None:intergenic
GTAAGCATTCATGGCATAAG+TGG 0.588803 7_4:-14293464 None:intergenic
CCGATTGCTGAGCGTAATTG+GGG 0.589082 7_4:+14292016 Msa1141210:CDS
CTAAGCATCTGAATAGAAGA+GGG 0.592649 7_4:+14293942 Msa1141210:three_prime_UTR
TCGACAGGTACACCAAACTA+AGG 0.596614 7_4:+14291729 Msa1141210:CDS
TGTACCTGTCGAACAGTCCA+CGG 0.598666 7_4:-14291718 None:intergenic
CAATCATTACCACCAAGTGC+CGG 0.603318 7_4:+14291551 Msa1141210:CDS
GATTGCGGGCCAATCCAACC+AGG 0.613106 7_4:+14293403 Msa1141210:CDS
GGTAGTGAAGTTCTTCATTG+GGG 0.617760 7_4:+14290243 Msa1141210:five_prime_UTR
TGTAACCGAAATATGGATAG+GGG 0.623802 7_4:-14291658 None:intergenic
GCTGTTTATTCAGCAATGAA+GGG 0.625942 7_4:+14291782 Msa1141210:CDS
TCCCAACCATCACAAACTGA+AGG 0.629351 7_4:-14291851 None:intergenic
CACCGTTGATGCCAAACAGG+AGG 0.634060 7_4:+14291945 Msa1141210:CDS
AATGCAGAGACCAGTAGCAC+CGG 0.647305 7_4:+14293255 Msa1141210:intron
AGTGCCGGAAAATTCAGACC+AGG 0.649461 7_4:+14291566 Msa1141210:CDS
AGGTCATAATCAGAAAGGCA+AGG 0.655826 7_4:+14293913 Msa1141210:three_prime_UTR
TATTATTAGTGAGTGTGCTG+TGG 0.668880 7_4:-14291522 None:intergenic
GCGTTATTTAGACCAAACCG+TGG 0.694113 7_4:+14291701 Msa1141210:CDS
TGGTTGGGATGCTTGTAGTG+TGG 0.707938 7_4:+14291865 Msa1141210:CDS
TGCGGGCCAATCCAACCAGG+AGG 0.713788 7_4:+14293406 Msa1141210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTATAAAA+AGG - chr7_4:14290653-14290672 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+CGG + chr7_4:14290659-14290678 Msa1141210:intron 0.0%
!!! ATTAAATAATTTTTACTCAT+GGG - chr7_4:14290802-14290821 None:intergenic 10.0%
!!! TATTAAATAATTTTTACTCA+TGG - chr7_4:14290803-14290822 None:intergenic 10.0%
!!! TCTATTTTTTATATTTGTTA+AGG - chr7_4:14291416-14291435 None:intergenic 10.0%
!! TGCAAAAAAATTGTTTAAAT+TGG - chr7_4:14291092-14291111 None:intergenic 15.0%
!!! TATATGGAATTATTTTTGTA+TGG - chr7_4:14291315-14291334 None:intergenic 15.0%
!!! ATATTTGTTAAGGAAATTAA+TGG - chr7_4:14291406-14291425 None:intergenic 15.0%
!! AAATTCCTAATTCAAATTTA+TGG - chr7_4:14291452-14291471 None:intergenic 15.0%
!!! ATTTTGTACAAATTTTTTTC+AGG + chr7_4:14291496-14291515 Msa1141210:intron 15.0%
!! AATTAAAAAGAAAATTGCAT+TGG - chr7_4:14292877-14292896 None:intergenic 15.0%
!! TTAATATTAACATTAGTATG+TGG + chr7_4:14294154-14294173 Msa1141210:three_prime_UTR 15.0%
!!! GATCTCTTTTTTCATTTATA+AGG - chr7_4:14290703-14290722 None:intergenic 20.0%
!! TTTATTGTTGCTATGATTTA+TGG + chr7_4:14290775-14290794 Msa1141210:intron 20.0%
!!! CATAAAAATCTTATTTGAGT+CGG + chr7_4:14291005-14291024 Msa1141210:intron 20.0%
!! GTTTAAATTGGAATATCAAA+CGG - chr7_4:14291080-14291099 None:intergenic 20.0%
!! ATAATTCCATATAGTCATAT+TGG + chr7_4:14291322-14291341 Msa1141210:intron 20.0%
!! TTGTTCCATAAATTTGAATT+AGG + chr7_4:14291444-14291463 Msa1141210:intron 20.0%
!! AAAGTATAAAAGTGAGAAAA+AGG - chr7_4:14292108-14292127 None:intergenic 20.0%
!! AATCAAAACATCAATAACAA+CGG - chr7_4:14292419-14292438 None:intergenic 20.0%
!!! GTTTGGAATTATTTAATTGT+CGG + chr7_4:14292605-14292624 Msa1141210:intron 20.0%
!! AAACGATGAAAATAAAGTAA+AGG - chr7_4:14292783-14292802 None:intergenic 20.0%
!!! ACTTTTTTTTCTGTACAATA+AGG + chr7_4:14292932-14292951 Msa1141210:intron 20.0%
!! AATGATAAAACTGTGAAATT+TGG - chr7_4:14293208-14293227 None:intergenic 20.0%
!!! CATTTTATTCAAAATAGAAC+CGG + chr7_4:14293724-14293743 Msa1141210:intron 20.0%
!!! TGTTGTCTTGATTTATTTTT+TGG + chr7_4:14294008-14294027 Msa1141210:three_prime_UTR 20.0%
!!! TGTGTTGATTATTGTATATT+AGG + chr7_4:14294040-14294059 Msa1141210:three_prime_UTR 20.0%
!!! TGAGGGTATTAATGATATTA+AGG + chr7_4:14290329-14290348 Msa1141210:CDS 25.0%
! GGTATAAACATTCTTGTTAA+AGG - chr7_4:14290405-14290424 None:intergenic 25.0%
!! AAATCAATTTAGGGTATGTT+TGG + chr7_4:14290441-14290460 Msa1141210:intron 25.0%
! CAACAATAAATGCTAGTAAA+CGG - chr7_4:14290765-14290784 None:intergenic 25.0%
!! CAATTTGAAATCTGAATCAT+AGG - chr7_4:14291055-14291074 None:intergenic 25.0%
! CTATGATTCAGATTTCAAAT+TGG + chr7_4:14291053-14291072 Msa1141210:intron 25.0%
! TCCTATTTATAGGAGAAAAT+TGG + chr7_4:14291201-14291220 Msa1141210:intron 25.0%
! CCTATTTATAGGAGAAAATT+GGG + chr7_4:14291202-14291221 Msa1141210:intron 25.0%
! TTTAATGAAAATCAGAAACC+TGG + chr7_4:14291992-14292011 Msa1141210:CDS 25.0%
! TATCAGATATAACAACAGAA+AGG - chr7_4:14292240-14292259 None:intergenic 25.0%
! ATAGCAAAATAGTATTCATG+TGG - chr7_4:14292511-14292530 None:intergenic 25.0%
! TTTAGACCTCAAAATATCAT+TGG - chr7_4:14292658-14292677 None:intergenic 25.0%
!! TCTAAAGTGTCATTATAACA+TGG + chr7_4:14292672-14292691 Msa1141210:intron 25.0%
! TTTGTTTGTACTACAATATC+TGG + chr7_4:14292818-14292837 Msa1141210:intron 25.0%
!!! GTACAATAAGGTTTTGTATT+TGG + chr7_4:14292944-14292963 Msa1141210:intron 25.0%
! ACTAGTAAAGAACATAACAA+GGG - chr7_4:14293581-14293600 None:intergenic 25.0%
! TGTTCTTTACTAGTGATTTA+TGG + chr7_4:14293587-14293606 Msa1141210:intron 25.0%
! ATTGAATATATGTTCGATGT+TGG + chr7_4:14293643-14293662 Msa1141210:intron 25.0%
!!! CGGTTCTATTTTGAATAAAA+TGG - chr7_4:14293726-14293745 None:intergenic 25.0%
!!! GTTTTGTTATTCTTATTTGC+AGG + chr7_4:14293855-14293874 Msa1141210:intron 25.0%
! CTTAGATTCTACAATTATCA+TGG - chr7_4:14293881-14293900 None:intergenic 25.0%
!!! TGTCTTGATTTATTTTTTGG+AGG + chr7_4:14294011-14294030 Msa1141210:three_prime_UTR 25.0%
!!! GTCTTGATTTATTTTTTGGA+GGG + chr7_4:14294012-14294031 Msa1141210:three_prime_UTR 25.0%
!!! TCTTGATTTATTTTTTGGAG+GGG + chr7_4:14294013-14294032 Msa1141210:three_prime_UTR 25.0%
! AGGTAAAAAGATGTTAACAT+TGG + chr7_4:14294060-14294079 Msa1141210:three_prime_UTR 25.0%
CTAAATCTCATCTTTGTTCT+TGG + chr7_4:14290359-14290378 Msa1141210:intron 30.0%
TGTGAGACACAAATCAATTT+AGG + chr7_4:14290431-14290450 Msa1141210:intron 30.0%
GTGAGACACAAATCAATTTA+GGG + chr7_4:14290432-14290451 Msa1141210:intron 30.0%
AAATTGAATGAAGCGTGTTA+AGG + chr7_4:14290881-14290900 Msa1141210:intron 30.0%
! TTTTCTCCTATAAATAGGAC+CGG - chr7_4:14291200-14291219 None:intergenic 30.0%
! CCCAATTTTCTCCTATAAAT+AGG - chr7_4:14291205-14291224 None:intergenic 30.0%
AACTCAATGTATCTAGAAAG+AGG + chr7_4:14291232-14291251 Msa1141210:intron 30.0%
TCACAAAATATTACTCCCTT+CGG - chr7_4:14291259-14291278 None:intergenic 30.0%
TCTCTACCAATATGACTATA+TGG - chr7_4:14291331-14291350 None:intergenic 30.0%
TCTCTTAGAAATTTCAGCAT+TGG - chr7_4:14291614-14291633 None:intergenic 30.0%
TTGTAACCGAAATATGGATA+GGG - chr7_4:14291662-14291681 None:intergenic 30.0%
ATTGTAACCGAAATATGGAT+AGG - chr7_4:14291663-14291682 None:intergenic 30.0%
TTTGGATTGTAACCGAAATA+TGG - chr7_4:14291668-14291687 None:intergenic 30.0%
! GAAAATTGTCTAAAACTCCA+TGG + chr7_4:14292176-14292195 Msa1141210:intron 30.0%
!!! ATCGCAAACTTCTGTTTTTA+CGG - chr7_4:14292217-14292236 None:intergenic 30.0%
GTTATATCTGATACATGATC+TGG + chr7_4:14292247-14292266 Msa1141210:intron 30.0%
CATACAAAAGTAGAGATTCA+CGG - chr7_4:14292389-14292408 None:intergenic 30.0%
TTACCGTTATTGATCTACAA+CGG + chr7_4:14292442-14292461 Msa1141210:intron 30.0%
TCATTTACTAGATTCGTGTT+TGG + chr7_4:14292588-14292607 Msa1141210:intron 30.0%
! AGAGTTCCAATGATATTTTG+AGG + chr7_4:14292649-14292668 Msa1141210:intron 30.0%
!!! ATATAAGTTTTGAGGAGTCA+CGG - chr7_4:14293077-14293096 None:intergenic 30.0%
CTCCTCAAAACTTATATCTA+TGG + chr7_4:14293080-14293099 Msa1141210:intron 30.0%
! GACCATAGATATAAGTTTTG+AGG - chr7_4:14293085-14293104 None:intergenic 30.0%
TATCACCATAGGCATAATAT+GGG - chr7_4:14293111-14293130 None:intergenic 30.0%
TTATCACCATAGGCATAATA+TGG - chr7_4:14293112-14293131 None:intergenic 30.0%
AAACTGTGAAATTTGGATCT+TGG - chr7_4:14293201-14293220 None:intergenic 30.0%
TAAAGAACATAACAAGGGTA+TGG - chr7_4:14293576-14293595 None:intergenic 30.0%
CACTAGTAAAGAACATAACA+AGG - chr7_4:14293582-14293601 None:intergenic 30.0%
AATCTAAGCATGTTTCTTGA+AGG + chr7_4:14293893-14293912 Msa1141210:exon 30.0%
TTTAATCTAATGCTCGTTTG+TGG + chr7_4:14294102-14294121 Msa1141210:three_prime_UTR 30.0%
!! TTGGTAGTGAAGTTCTTCAT+TGG + chr7_4:14290241-14290260 Msa1141210:five_prime_UTR 35.0%
! TGGTAGTGAAGTTCTTCATT+GGG + chr7_4:14290242-14290261 Msa1141210:five_prime_UTR 35.0%
GATTTGTGTCTCACAAAAAG+TGG - chr7_4:14290426-14290445 None:intergenic 35.0%
!! GTACAATTGCGTAAGTTGAT+AGG + chr7_4:14290854-14290873 Msa1141210:intron 35.0%
!! AACGTGTCATGATTGTTTTG+TGG + chr7_4:14290924-14290943 Msa1141210:intron 35.0%
ACCAAATTAGTCCTTAGTCT+TGG + chr7_4:14291126-14291145 Msa1141210:intron 35.0%
TCCAAGACTAAGGACTAATT+TGG - chr7_4:14291130-14291149 None:intergenic 35.0%
! AACTTTTTGAATACTCCCTC+CGG + chr7_4:14291178-14291197 Msa1141210:intron 35.0%
!! AAGGAAATTAATGGTGTCGT+AGG - chr7_4:14291397-14291416 None:intergenic 35.0%
TATTATTAGTGAGTGTGCTG+TGG - chr7_4:14291525-14291544 None:intergenic 35.0%
AGAAACAAGAACACCATTCA+TGG + chr7_4:14291631-14291650 Msa1141210:CDS 35.0%
GTTAACCCCTATCCATATTT+CGG + chr7_4:14291653-14291672 Msa1141210:CDS 35.0%
TGTAACCGAAATATGGATAG+GGG - chr7_4:14291661-14291680 None:intergenic 35.0%
!! TTGGTTTGTGTACCTTAGTT+TGG - chr7_4:14291744-14291763 None:intergenic 35.0%
AAACCAATTCGACGCTTTAA+TGG + chr7_4:14291757-14291776 Msa1141210:CDS 35.0%
GCTGTTTATTCAGCAATGAA+GGG + chr7_4:14291782-14291801 Msa1141210:CDS 35.0%
!! GTTATAATGGTGAGTTGATC+AGG + chr7_4:14291900-14291919 Msa1141210:CDS 35.0%
TCATAAACAGGAGAGAAATC+AGG - chr7_4:14292052-14292071 None:intergenic 35.0%
AAGATTCCAGAGTCATAAAC+AGG - chr7_4:14292064-14292083 None:intergenic 35.0%
! AATTGTCTAAAACTCCATGG+AGG + chr7_4:14292179-14292198 Msa1141210:intron 35.0%
GGCGCATGTTTAATAAAAAC+AGG - chr7_4:14292329-14292348 None:intergenic 35.0%
!!! TCTAGTTTTTACCACTGAGA+CGG - chr7_4:14292362-14292381 None:intergenic 35.0%
TCTCAGTGGTAAAAACTAGA+AGG + chr7_4:14292362-14292381 Msa1141210:intron 35.0%
!! CGTGAATCTCTACTTTTGTA+TGG + chr7_4:14292387-14292406 Msa1141210:intron 35.0%
! ATCTGGTCTCTTTTATCACA+TGG + chr7_4:14292835-14292854 Msa1141210:intron 35.0%
! CTCTTTTATCACATGGAACA+TGG + chr7_4:14292842-14292861 Msa1141210:intron 35.0%
CGCGGACAAAAAATTAAAAC+TGG - chr7_4:14292987-14293006 None:intergenic 35.0%
!! CTAGTTTAATTTCTAGTGCG+CGG - chr7_4:14293005-14293024 None:intergenic 35.0%
CGCACTAGAAATTAAACTAG+AGG + chr7_4:14293005-14293024 Msa1141210:intron 35.0%
ATTTACGAAGTAGCTAGCAA+TGG + chr7_4:14293031-14293050 Msa1141210:intron 35.0%
TCATTCCCATATTATGCCTA+TGG + chr7_4:14293103-14293122 Msa1141210:intron 35.0%
TGACATGGAATTATCACCAT+AGG - chr7_4:14293122-14293141 None:intergenic 35.0%
CATGTCAACGACGATAATAA+GGG + chr7_4:14293135-14293154 Msa1141210:intron 35.0%
AATGCTTACTATCAGGCTAA+TGG + chr7_4:14293478-14293497 Msa1141210:CDS 35.0%
TTAGAGAAGTCACAGTTGAA+AGG - chr7_4:14293511-14293530 None:intergenic 35.0%
CTTGAAGGTCATAATCAGAA+AGG + chr7_4:14293908-14293927 Msa1141210:three_prime_UTR 35.0%
TCTAAGCATCTGAATAGAAG+AGG + chr7_4:14293941-14293960 Msa1141210:three_prime_UTR 35.0%
CTAAGCATCTGAATAGAAGA+GGG + chr7_4:14293942-14293961 Msa1141210:three_prime_UTR 35.0%
TCTGAATAGAAGAGGGAAAA+TGG + chr7_4:14293949-14293968 Msa1141210:three_prime_UTR 35.0%
GGTAGTGAAGTTCTTCATTG+GGG + chr7_4:14290243-14290262 Msa1141210:five_prime_UTR 40.0%
GGTGATGCTAATATGATTCG+TGG + chr7_4:14290264-14290283 Msa1141210:exon 40.0%
GAATGAAGAGTTCTCATAGC+AGG - chr7_4:14290297-14290316 None:intergenic 40.0%
CGGTTCAGATGAGCAAAAAT+TGG - chr7_4:14290745-14290764 None:intergenic 40.0%
TTTGTGAGTGTCCAAGACTA+AGG - chr7_4:14291140-14291159 None:intergenic 40.0%
TATCTAGAAAGAGGACCGAA+GGG + chr7_4:14291241-14291260 Msa1141210:intron 40.0%
! GAAACCTGGTCTGAATTTTC+CGG - chr7_4:14291573-14291592 None:intergenic 40.0%
! ATTACGTGTTTTGCGAAACC+TGG - chr7_4:14291587-14291606 None:intergenic 40.0%
CGCTGTTTATTCAGCAATGA+AGG + chr7_4:14291781-14291800 Msa1141210:CDS 40.0%
TATTCAGCAATGAAGGGACT+TGG + chr7_4:14291788-14291807 Msa1141210:CDS 40.0%
GCGAATGCTCAGAGTTATAA+TGG + chr7_4:14291887-14291906 Msa1141210:CDS 40.0%
AAAGTCTCAAACCTCCTGTT+TGG - chr7_4:14291959-14291978 None:intergenic 40.0%
TTCTCTCCTGTTTATGACTC+TGG + chr7_4:14292055-14292074 Msa1141210:intron 40.0%
TATCTGATACATGATCTGGC+TGG + chr7_4:14292251-14292270 Msa1141210:intron 40.0%
GGTCCGTTGTAGATCAATAA+CGG - chr7_4:14292448-14292467 None:intergenic 40.0%
!! TATGGCGGACTTCTTGATAA+TGG - chr7_4:14292469-14292488 None:intergenic 40.0%
CGCTATAGAAAGTTCTATGG+CGG - chr7_4:14292484-14292503 None:intergenic 40.0%
ACGCGCTATAGAAAGTTCTA+TGG - chr7_4:14292487-14292506 None:intergenic 40.0%
CCTTATTATCGTCGTTGACA+TGG - chr7_4:14293137-14293156 None:intergenic 40.0%
CCATGTCAACGACGATAATA+AGG + chr7_4:14293134-14293153 Msa1141210:intron 40.0%
AACGACGATAATAAGGGTTG+CGG + chr7_4:14293141-14293160 Msa1141210:intron 40.0%
! TGCAGCCAAAAAGTTGATTG+CGG + chr7_4:14293388-14293407 Msa1141210:CDS 40.0%
GTAAGCATTCATGGCATAAG+TGG - chr7_4:14293467-14293486 None:intergenic 40.0%
TGCCATGAATGCTTACTATC+AGG + chr7_4:14293471-14293490 Msa1141210:CDS 40.0%
AGCCTGATAGTAAGCATTCA+TGG - chr7_4:14293476-14293495 None:intergenic 40.0%
AACTGTGACTTCTCTAACTC+TGG + chr7_4:14293514-14293533 Msa1141210:CDS 40.0%
GTATGGAAATGAGACTCACT+TGG - chr7_4:14293559-14293578 None:intergenic 40.0%
TGTAATCTCATGTGCAACGA+TGG - chr7_4:14293693-14293712 None:intergenic 40.0%
AGGTCATAATCAGAAAGGCA+AGG + chr7_4:14293913-14293932 Msa1141210:three_prime_UTR 40.0%
TCATTCTGCTCTTGTTGCTG+AGG + chr7_4:14290311-14290330 Msa1141210:CDS 45.0%
CATTCTGCTCTTGTTGCTGA+GGG + chr7_4:14290312-14290331 Msa1141210:CDS 45.0%
AGACAGAAGCTAGCGACATT+CGG - chr7_4:14290956-14290975 None:intergenic 45.0%
! TGTCGCTAGCTTCTGTCTTT+AGG + chr7_4:14290958-14290977 Msa1141210:intron 45.0%
CTCCTATAAATAGGACCGGA+GGG - chr7_4:14291196-14291215 None:intergenic 45.0%
TCTCCTATAAATAGGACCGG+AGG - chr7_4:14291197-14291216 None:intergenic 45.0%
GTATCTAGAAAGAGGACCGA+AGG + chr7_4:14291240-14291259 Msa1141210:intron 45.0%
CAATCATTACCACCAAGTGC+CGG + chr7_4:14291551-14291570 Msa1141210:CDS 45.0%
GGATAGGGGTTAACCATGAA+TGG - chr7_4:14291647-14291666 None:intergenic 45.0%
AACGCGAAGTTCACGTTCTT+TGG - chr7_4:14291686-14291705 None:intergenic 45.0%
GCGTTATTTAGACCAAACCG+TGG + chr7_4:14291701-14291720 Msa1141210:CDS 45.0%
TCGACAGGTACACCAAACTA+AGG + chr7_4:14291729-14291748 Msa1141210:CDS 45.0%
!! CGTCCATTAAAGCGTCGAAT+TGG - chr7_4:14291763-14291782 None:intergenic 45.0%
! GCAATGAAGGGACTTGGTTT+CGG + chr7_4:14291794-14291813 Msa1141210:CDS 45.0%
GCCTTCAGTTTGTGATGGTT+GGG + chr7_4:14291850-14291869 Msa1141210:CDS 45.0%
TCCCAACCATCACAAACTGA+AGG - chr7_4:14291854-14291873 None:intergenic 45.0%
!! TGGTGAGTTGATCAGGCATT+TGG + chr7_4:14291907-14291926 Msa1141210:CDS 45.0%
!! TGAGTTGATCAGGCATTTGG+AGG + chr7_4:14291910-14291929 Msa1141210:CDS 45.0%
AACCTCCTGTTTGGCATCAA+CGG - chr7_4:14291950-14291969 None:intergenic 45.0%
TCCGATTGCTGAGCGTAATT+GGG + chr7_4:14292015-14292034 Msa1141210:CDS 45.0%
AGCGTAATTGGGGTCTCTTT+CGG + chr7_4:14292026-14292045 Msa1141210:CDS 45.0%
!!! CTGTTTTTACGGACCCACAT+TGG - chr7_4:14292206-14292225 None:intergenic 45.0%
! TGATCTGGCTGGTGTCAATT+TGG + chr7_4:14292262-14292281 Msa1141210:intron 45.0%
CACTGAGACGGTGATCTAAT+TGG - chr7_4:14292350-14292369 None:intergenic 45.0%
CAATTAGATCACCGTCTCAG+TGG + chr7_4:14292348-14292367 Msa1141210:intron 45.0%
ACGAAGTAGCTAGCAATGGT+TGG + chr7_4:14293035-14293054 Msa1141210:intron 45.0%
!! GTTACTGGTCTTGGTTGTAC+CGG - chr7_4:14293277-14293296 None:intergenic 45.0%
! GCAGCCAAAAAGTTGATTGC+GGG + chr7_4:14293389-14293408 Msa1141210:CDS 45.0%
! TTGGCCCGCAATCAACTTTT+TGG - chr7_4:14293396-14293415 None:intergenic 45.0%
CTTTGCTGCCAACAACCTTA+GGG + chr7_4:14293435-14293454 Msa1141210:CDS 45.0%
! AATAGAACCGGTGTCAACGA+CGG + chr7_4:14293736-14293755 Msa1141210:intron 45.0%
TGCTAACGCGTGTTACAAGA+AGG + chr7_4:14293770-14293789 Msa1141210:intron 45.0%
GAGGGAAAATGGAGTGAATG+TGG + chr7_4:14293960-14293979 Msa1141210:three_prime_UTR 45.0%
!!! TTTTCTTTTTAATTTTTTTA+AGG + chr7_4:14292883-14292902 Msa1141210:intron 5.0%
CTCCCTCCGGTCCTATTTAT+AGG + chr7_4:14291191-14291210 Msa1141210:intron 50.0%
! CTGAATTTTCCGGCACTTGG+TGG - chr7_4:14291563-14291582 None:intergenic 50.0%
! GGTCTGAATTTTCCGGCACT+TGG - chr7_4:14291566-14291585 None:intergenic 50.0%
! AGTGCCGGAAAATTCAGACC+AGG + chr7_4:14291566-14291585 Msa1141210:CDS 50.0%
TGTACCTGTCGAACAGTCCA+CGG - chr7_4:14291721-14291740 None:intergenic 50.0%
GACATTGCAGTTGGCGAAAC+AGG + chr7_4:14291824-14291843 Msa1141210:CDS 50.0%
GGCCTTCAGTTTGTGATGGT+TGG + chr7_4:14291849-14291868 Msa1141210:CDS 50.0%
TGGTTGGGATGCTTGTAGTG+TGG + chr7_4:14291865-14291884 Msa1141210:CDS 50.0%
TTGATCAGGCATTTGGAGGC+AGG + chr7_4:14291914-14291933 Msa1141210:CDS 50.0%
TGATCAGGCATTTGGAGGCA+GGG + chr7_4:14291915-14291934 Msa1141210:CDS 50.0%
GTCCGATTGCTGAGCGTAAT+TGG + chr7_4:14292014-14292033 Msa1141210:CDS 50.0%
CCCCAATTACGCTCAGCAAT+CGG - chr7_4:14292019-14292038 None:intergenic 50.0%
CCGATTGCTGAGCGTAATTG+GGG + chr7_4:14292016-14292035 Msa1141210:CDS 50.0%
TGGAATCTTGCGCAATGCAC+AGG + chr7_4:14292075-14292094 Msa1141210:intron 50.0%
AACTCCATGGAGGACCAATG+TGG + chr7_4:14292189-14292208 Msa1141210:intron 50.0%
ACTCCATGGAGGACCAATGT+GGG + chr7_4:14292190-14292209 Msa1141210:intron 50.0%
AATGCAGAGACCAGTAGCAC+CGG + chr7_4:14293255-14293274 Msa1141210:intron 50.0%
CAAACTCCTCCTGGTTGGAT+TGG - chr7_4:14293415-14293434 None:intergenic 50.0%
CAAAGCAAACTCCTCCTGGT+TGG - chr7_4:14293420-14293439 None:intergenic 50.0%
GCTTTGCTGCCAACAACCTT+AGG + chr7_4:14293434-14293453 Msa1141210:CDS 50.0%
CATAAGTGGCAAGAGCCCTA+AGG - chr7_4:14293453-14293472 None:intergenic 50.0%
CTGTCGAACAGTCCACGGTT+TGG - chr7_4:14291716-14291735 None:intergenic 55.0%
! CAAACCGTGGACTGTTCGAC+AGG + chr7_4:14291714-14291733 Msa1141210:CDS 55.0%
GGTGACGTGGACATTGCAGT+TGG + chr7_4:14291815-14291834 Msa1141210:CDS 55.0%
TTGCAGTTGGCGAAACAGGC+TGG + chr7_4:14291828-14291847 Msa1141210:CDS 55.0%
!! GGCTGGCCTTCAGTTTGTGA+TGG + chr7_4:14291845-14291864 Msa1141210:CDS 55.0%
GGACACCGTTGATGCCAAAC+AGG + chr7_4:14291942-14291961 Msa1141210:CDS 55.0%
CACCGTTGATGCCAAACAGG+AGG + chr7_4:14291945-14291964 Msa1141210:CDS 55.0%
TTACGCTCAGCAATCGGACC+AGG - chr7_4:14292013-14292032 None:intergenic 55.0%
!! CTTGGTTGTACCGGTGCTAC+TGG - chr7_4:14293268-14293287 None:intergenic 55.0%
!! CGTACGGGTGTTACTGGTCT+TGG - chr7_4:14293286-14293305 None:intergenic 55.0%
! CTTGGTCGTACGGGTGTTAC+TGG - chr7_4:14293292-14293311 None:intergenic 55.0%
CAGTAACACCCGTACGACCA+AGG + chr7_4:14293290-14293309 Msa1141210:CDS 55.0%
AACTGCAGGCCTTGGTCGTA+CGG - chr7_4:14293302-14293321 None:intergenic 55.0%
TACGACCAAGGCCTGCAGTT+GGG + chr7_4:14293302-14293321 Msa1141210:CDS 55.0%
AACGCTGCGTTGCTTGCATC+CGG - chr7_4:14293346-14293365 None:intergenic 55.0%
GCAGCAAAGCAAACTCCTCC+TGG - chr7_4:14293424-14293443 None:intergenic 55.0%
GGCAAGAGCCCTAAGGTTGT+TGG - chr7_4:14293446-14293465 None:intergenic 55.0%
ACACTGACCGTCGTTGACAC+CGG - chr7_4:14293746-14293765 None:intergenic 55.0%
! GGGACTTGGTTTCGGTGACG+TGG + chr7_4:14291802-14291821 Msa1141210:CDS 60.0%
AGGCATTTGGAGGCAGGGAG+AGG + chr7_4:14291920-14291939 Msa1141210:CDS 60.0%
GGCATTTGGAGGCAGGGAGA+GGG + chr7_4:14291921-14291940 Msa1141210:CDS 60.0%
GGACCCACATTGGTCCTCCA+TGG - chr7_4:14292196-14292215 None:intergenic 60.0%
ACTGCAGGCCTTGGTCGTAC+GGG - chr7_4:14293301-14293320 None:intergenic 60.0%
GTACGACCAAGGCCTGCAGT+TGG + chr7_4:14293301-14293320 Msa1141210:CDS 60.0%
ACACACCAGCTCCCAACTGC+AGG - chr7_4:14293316-14293335 None:intergenic 60.0%
GCGTTGCTTGCATCCGGCTT+CGG - chr7_4:14293340-14293359 None:intergenic 60.0%
GATTGCGGGCCAATCCAACC+AGG + chr7_4:14293403-14293422 Msa1141210:CDS 60.0%
CAGCTCCCAACTGCAGGCCT+TGG - chr7_4:14293310-14293329 None:intergenic 65.0%
CAAGGCCTGCAGTTGGGAGC+TGG + chr7_4:14293308-14293327 Msa1141210:CDS 65.0%
GAGCTGGTGTGTGCCGAAGC+CGG + chr7_4:14293324-14293343 Msa1141210:CDS 65.0%
TGCGGGCCAATCCAACCAGG+AGG + chr7_4:14293406-14293425 Msa1141210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 14290227 14294195 14290227 ID=Msa1141210;Name=Msa1141210
chr7_4 mRNA 14290227 14294195 14290227 ID=Msa1141210-mRNA-1;Parent=Msa1141210;Name=Msa1141210-mRNA-1;_AED=0.16;_eAED=0.16;_QI=49|0.66|0.75|1|1|1|4|296|313
chr7_4 exon 14290227 14290350 14290227 ID=Msa1141210-mRNA-1:exon:3353;Parent=Msa1141210-mRNA-1
chr7_4 exon 14291518 14292063 14291518 ID=Msa1141210-mRNA-1:exon:3354;Parent=Msa1141210-mRNA-1
chr7_4 exon 14293262 14293559 14293262 ID=Msa1141210-mRNA-1:exon:3355;Parent=Msa1141210-mRNA-1
chr7_4 exon 14293877 14294195 14293877 ID=Msa1141210-mRNA-1:exon:3356;Parent=Msa1141210-mRNA-1
chr7_4 five_prime_UTR 14290227 14290275 14290227 ID=Msa1141210-mRNA-1:five_prime_utr;Parent=Msa1141210-mRNA-1
chr7_4 CDS 14290276 14290350 14290276 ID=Msa1141210-mRNA-1:cds;Parent=Msa1141210-mRNA-1
chr7_4 CDS 14291518 14292063 14291518 ID=Msa1141210-mRNA-1:cds;Parent=Msa1141210-mRNA-1
chr7_4 CDS 14293262 14293559 14293262 ID=Msa1141210-mRNA-1:cds;Parent=Msa1141210-mRNA-1
chr7_4 CDS 14293877 14293899 14293877 ID=Msa1141210-mRNA-1:cds;Parent=Msa1141210-mRNA-1
chr7_4 three_prime_UTR 14293900 14294195 14293900 ID=Msa1141210-mRNA-1:three_prime_utr;Parent=Msa1141210-mRNA-1
Gene Sequence

>Msa1141210

ATGATTCGTGGTCTTGTTCCTGCTATGAGAACTCTTCATTCTGCTCTTGTTGCTGAGGGTATTAATGATATTAAGGTTACCACAGCACACTCACTAATAATAATGCGACAATCATTACCACCAAGTGCCGGAAAATTCAGACCAGGTTTCGCAAAACACGTAATAGCACCAATGCTGAAATTTCTAAGAGAAACAAGAACACCATTCATGGTTAACCCCTATCCATATTTCGGTTACAATCCAAAGAACGTGAACTTCGCGTTATTTAGACCAAACCGTGGACTGTTCGACAGGTACACCAAACTAAGGTACACAAACCAATTCGACGCTTTAATGGACGCTGTTTATTCAGCAATGAAGGGACTTGGTTTCGGTGACGTGGACATTGCAGTTGGCGAAACAGGCTGGCCTTCAGTTTGTGATGGTTGGGATGCTTGTAGTGTGGCGAATGCTCAGAGTTATAATGGTGAGTTGATCAGGCATTTGGAGGCAGGGAGAGGGACACCGTTGATGCCAAACAGGAGGTTTGAGACTTTTCTTTTTGCTTTGTTTAATGAAAATCAGAAACCTGGTCCGATTGCTGAGCGTAATTGGGGTCTCTTTCGGCCTGATTTCTCTCCTAGACCAGTAGCACCGGTACAACCAAGACCAGTAACACCCGTACGACCAAGGCCTGCAGTTGGGAGCTGGTGTGTGCCGAAGCCGGATGCAAGCAACGCAGCGTTACAAGCGAATATAAACTATGTTTGCAGCCAAAAAGTTGATTGCGGGCCAATCCAACCAGGAGGAGTTTGCTTTGCTGCCAACAACCTTAGGGCTCTTGCCACTTATGCCATGAATGCTTACTATCAGGCTAATGGAAGACATCCTTTCAACTGTGACTTCTCTAACTCTGGTGTTATTGTTTCTACTAATCCAAGCCATGATAATTGTAGAATCTAA
Protein sequence

>Msa1141210

MIRGLVPAMRTLHSALVAEGINDIKVTTAHSLIIMRQSLPPSAGKFRPGFAKHVIAPMLKFLRETRTPFMVNPYPYFGYNPKNVNFALFRPNRGLFDRYTKLRYTNQFDALMDAVYSAMKGLGFGDVDIAVGETGWPSVCDGWDACSVANAQSYNGELIRHLEAGRGTPLMPNRRFETFLFALFNENQKPGPIAERNWGLFRPDFSPRPVAPVQPRPVTPVRPRPAVGSWCVPKPDASNAALQANINYVCSQKVDCGPIQPGGVCFAANNLRALATYAMNAYYQANGRHPFNCDFSNSGVIVSTNPSHDNCRI*