AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTCACGGAATCTAATT+TGG 0.209963 7_4:+20684549 None:intergenic
CATATAAAACTTGATGAAAA+TGG 0.240400 7_4:-20684599 Msa1144550:five_prime_UTR
ATTCACTTTGATTGTCACTA+TGG 0.299236 7_4:-20684641 Msa1144550:five_prime_UTR
AAGATCCTTCTTTCCAATAC+AGG 0.354848 7_4:+20683406 None:intergenic
GACGGAGCTGCTGCAGAGAT+TGG 0.357540 7_4:-20684468 Msa1144550:CDS
CCAAATTAGATTCCGTGAAA+TGG 0.389565 7_4:-20684549 Msa1144550:exon
CTGCTAGATCGGAGATGGGC+CGG 0.391860 7_4:-20684491 Msa1144550:CDS
TCTAGGTAGTCTCCCTGTAT+TGG 0.426018 7_4:-20683419 Msa1144550:intron
AGGATCTTCAAGACTTGGAT+TGG 0.426521 7_4:-20683391 Msa1144550:CDS
CAGCAATATTGTATTGAGCT+TGG 0.439301 7_4:-20684668 Msa1144550:five_prime_UTR
AAAGAAGGATCTTCAAGACT+TGG 0.462503 7_4:-20683396 Msa1144550:CDS
CTCATGCAAGAAACGGTTGA+TGG 0.480355 7_4:-20683935 Msa1144550:intron
AAAAGATGTCCAATGTCAAA+TGG 0.485689 7_4:-20684029 Msa1144550:CDS
TGCTAGATCGGAGATGGGCC+GGG 0.486001 7_4:-20684490 Msa1144550:CDS
GTCTCCCTGTATTGGAAAGA+AGG 0.493913 7_4:-20683411 Msa1144550:CDS
AGGTGACAGGGCTGCTAGAT+CGG 0.496214 7_4:-20684502 Msa1144550:CDS
CAGGGCTGCTAGATCGGAGA+TGG 0.504501 7_4:-20684496 Msa1144550:CDS
AGTTGCGCAAAGGAGGTGAC+AGG 0.523749 7_4:-20684515 Msa1144550:CDS
CTGAATATGTTGAAGTGAAA+GGG 0.524733 7_4:-20684005 Msa1144550:CDS
TTCCTCGCTCATGCAAGAAA+CGG 0.534516 7_4:-20683942 Msa1144550:CDS
TCTTCAAGACTTGGATTGGA+AGG 0.545161 7_4:-20683387 Msa1144550:CDS
AGATCCTTCTTTCCAATACA+GGG 0.547547 7_4:+20683407 None:intergenic
ATATTCAGACCATTTGACAT+TGG 0.548689 7_4:+20684020 None:intergenic
TCTGAATATGTTGAAGTGAA+AGG 0.563055 7_4:-20684006 Msa1144550:CDS
TCTCTGCAGCAGCTCCGTCC+CGG 0.570077 7_4:+20684472 None:intergenic
GCTGCTGCAGAGATTGGAGA+TGG 0.571294 7_4:-20684462 Msa1144550:CDS
CTTCAAAAGTTGCGCAAAGG+AGG 0.573380 7_4:-20684522 Msa1144550:CDS
AACCGTTTCTTGCATGAGCG+AGG 0.574230 7_4:+20683940 None:intergenic
AGGGCTGCTAGATCGGAGAT+GGG 0.581235 7_4:-20684495 Msa1144550:CDS
AGATCGGAGATGGGCCGGGA+CGG 0.593534 7_4:-20684486 Msa1144550:CDS
GCTGTTCAATAAAGAAACAA+AGG 0.597283 7_4:+20684687 None:intergenic
TACCTTCAAAAGTTGCGCAA+AGG 0.612577 7_4:-20684525 Msa1144550:CDS
GTTGCGCAAAGGAGGTGACA+GGG 0.669375 7_4:-20684514 Msa1144550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTAAAAAACAATTTTTG+TGG + chr7_4:20683751-20683770 None:intergenic 15.0%
!! AGATAAATATGAAGTTAAAT+AGG + chr7_4:20684266-20684285 None:intergenic 15.0%
!!! ATTCTAAAAAACAATTTTTG+TGG + chr7_4:20683751-20683770 None:intergenic 15.0%
!! AGATAAATATGAAGTTAAAT+AGG + chr7_4:20684266-20684285 None:intergenic 15.0%
!! CATATAAAACTTGATGAAAA+TGG - chr7_4:20683502-20683521 Msa1144550:intron 20.0%
!!! AAAAAACAATTTTTGTGGAT+GGG + chr7_4:20683746-20683765 None:intergenic 20.0%
!!! TAAAAAACAATTTTTGTGGA+TGG + chr7_4:20683747-20683766 None:intergenic 20.0%
!!! TAATATAATTGAAGCACTAA+TGG - chr7_4:20683841-20683860 Msa1144550:intron 20.0%
!! CAATAACACATTTAAAGATA+AGG + chr7_4:20684037-20684056 None:intergenic 20.0%
!!! ATAATGATGGAAACTTATTA+TGG + chr7_4:20684339-20684358 None:intergenic 20.0%
!! TAATAAGTTTCCATCATTAT+AGG - chr7_4:20684339-20684358 Msa1144550:intron 20.0%
!! AATAATGCCTAGTAATTTAT+TGG - chr7_4:20684465-20684484 Msa1144550:CDS 20.0%
!! TTTGTTTAATATGTTATGTG+TGG - chr7_4:20684537-20684556 Msa1144550:exon 20.0%
!! CATATAAAACTTGATGAAAA+TGG - chr7_4:20683502-20683521 Msa1144550:intron 20.0%
!!! AAAAAACAATTTTTGTGGAT+GGG + chr7_4:20683746-20683765 None:intergenic 20.0%
!!! TAAAAAACAATTTTTGTGGA+TGG + chr7_4:20683747-20683766 None:intergenic 20.0%
!!! TAATATAATTGAAGCACTAA+TGG - chr7_4:20683841-20683860 Msa1144550:intron 20.0%
!! CAATAACACATTTAAAGATA+AGG + chr7_4:20684037-20684056 None:intergenic 20.0%
!!! ATAATGATGGAAACTTATTA+TGG + chr7_4:20684339-20684358 None:intergenic 20.0%
!! TAATAAGTTTCCATCATTAT+AGG - chr7_4:20684339-20684358 Msa1144550:intron 20.0%
!! AATAATGCCTAGTAATTTAT+TGG - chr7_4:20684465-20684484 Msa1144550:CDS 20.0%
!! TTTGTTTAATATGTTATGTG+TGG - chr7_4:20684537-20684556 Msa1144550:exon 20.0%
! AATCAAAGTCAAAAATGTCA+AGG - chr7_4:20683525-20683544 Msa1144550:intron 25.0%
! ATCAAAGTCAAAAATGTCAA+GGG - chr7_4:20683526-20683545 Msa1144550:intron 25.0%
! TCGATAAAGATATCTACATT+TGG + chr7_4:20683799-20683818 None:intergenic 25.0%
! TGGCAAAATTAAATAAGAGA+AGG - chr7_4:20683861-20683880 Msa1144550:intron 25.0%
!! GATTAATTACCTTTGAAAGA+AGG + chr7_4:20683965-20683984 None:intergenic 25.0%
! TTTAATATGTTATGTGTGGA+AGG - chr7_4:20684541-20684560 Msa1144550:exon 25.0%
! AATCAAAGTCAAAAATGTCA+AGG - chr7_4:20683525-20683544 Msa1144550:intron 25.0%
! ATCAAAGTCAAAAATGTCAA+GGG - chr7_4:20683526-20683545 Msa1144550:intron 25.0%
! TCGATAAAGATATCTACATT+TGG + chr7_4:20683799-20683818 None:intergenic 25.0%
! TGGCAAAATTAAATAAGAGA+AGG - chr7_4:20683861-20683880 Msa1144550:intron 25.0%
!! GATTAATTACCTTTGAAAGA+AGG + chr7_4:20683965-20683984 None:intergenic 25.0%
! TTTAATATGTTATGTGTGGA+AGG - chr7_4:20684541-20684560 Msa1144550:exon 25.0%
GCTGTTCAATAAAGAAACAA+AGG + chr7_4:20683417-20683436 None:intergenic 30.0%
ATTCACTTTGATTGTCACTA+TGG - chr7_4:20683460-20683479 Msa1144550:intron 30.0%
TGCATGATCATAGTATACTT+TGG + chr7_4:20683705-20683724 None:intergenic 30.0%
GTAATTGATAGATATGCTCT+TGG - chr7_4:20683883-20683902 Msa1144550:intron 30.0%
CAGAGTTCAATCGTAATTAA+TGG + chr7_4:20683921-20683940 None:intergenic 30.0%
! TGTGTTATTGAATTGTGTAG+TGG - chr7_4:20684047-20684066 Msa1144550:intron 30.0%
AAAAGATGTCCAATGTCAAA+TGG - chr7_4:20684072-20684091 Msa1144550:intron 30.0%
ATATTCAGACCATTTGACAT+TGG + chr7_4:20684084-20684103 None:intergenic 30.0%
TCTGAATATGTTGAAGTGAA+AGG - chr7_4:20684095-20684114 Msa1144550:intron 30.0%
CTGAATATGTTGAAGTGAAA+GGG - chr7_4:20684096-20684115 Msa1144550:intron 30.0%
ACTATCTCCTTTGTTAATAG+GGG + chr7_4:20684217-20684236 None:intergenic 30.0%
CACTATCTCCTTTGTTAATA+GGG + chr7_4:20684218-20684237 None:intergenic 30.0%
!!! AAAGGAGATAGTGGAATTTT+AGG - chr7_4:20684225-20684244 Msa1144550:intron 30.0%
AGTTTCCATCATTATAGGAA+TGG - chr7_4:20684344-20684363 Msa1144550:intron 30.0%
CTAGTGACCAATAAATTACT+AGG + chr7_4:20684475-20684494 None:intergenic 30.0%
ACCAATTTGAATTACCATAG+AGG - chr7_4:20684648-20684667 Msa1144550:five_prime_UTR 30.0%
TCCTCTATGGTAATTCAAAT+TGG + chr7_4:20684652-20684671 None:intergenic 30.0%
AGAATCAATTTCATCCTCTA+TGG + chr7_4:20684665-20684684 None:intergenic 30.0%
! TAGAGGATGAAATTGATTCT+AGG - chr7_4:20684665-20684684 Msa1144550:five_prime_UTR 30.0%
GCTGTTCAATAAAGAAACAA+AGG + chr7_4:20683417-20683436 None:intergenic 30.0%
ATTCACTTTGATTGTCACTA+TGG - chr7_4:20683460-20683479 Msa1144550:intron 30.0%
TGCATGATCATAGTATACTT+TGG + chr7_4:20683705-20683724 None:intergenic 30.0%
GTAATTGATAGATATGCTCT+TGG - chr7_4:20683883-20683902 Msa1144550:intron 30.0%
CAGAGTTCAATCGTAATTAA+TGG + chr7_4:20683921-20683940 None:intergenic 30.0%
! TGTGTTATTGAATTGTGTAG+TGG - chr7_4:20684047-20684066 Msa1144550:intron 30.0%
AAAAGATGTCCAATGTCAAA+TGG - chr7_4:20684072-20684091 Msa1144550:intron 30.0%
ATATTCAGACCATTTGACAT+TGG + chr7_4:20684084-20684103 None:intergenic 30.0%
TCTGAATATGTTGAAGTGAA+AGG - chr7_4:20684095-20684114 Msa1144550:intron 30.0%
CTGAATATGTTGAAGTGAAA+GGG - chr7_4:20684096-20684115 Msa1144550:intron 30.0%
ACTATCTCCTTTGTTAATAG+GGG + chr7_4:20684217-20684236 None:intergenic 30.0%
CACTATCTCCTTTGTTAATA+GGG + chr7_4:20684218-20684237 None:intergenic 30.0%
!!! AAAGGAGATAGTGGAATTTT+AGG - chr7_4:20684225-20684244 Msa1144550:intron 30.0%
AGTTTCCATCATTATAGGAA+TGG - chr7_4:20684344-20684363 Msa1144550:intron 30.0%
CTAGTGACCAATAAATTACT+AGG + chr7_4:20684475-20684494 None:intergenic 30.0%
ACCAATTTGAATTACCATAG+AGG - chr7_4:20684648-20684667 Msa1144550:five_prime_UTR 30.0%
TCCTCTATGGTAATTCAAAT+TGG + chr7_4:20684652-20684671 None:intergenic 30.0%
AGAATCAATTTCATCCTCTA+TGG + chr7_4:20684665-20684684 None:intergenic 30.0%
! TAGAGGATGAAATTGATTCT+AGG - chr7_4:20684665-20684684 Msa1144550:five_prime_UTR 30.0%
CAGCAATATTGTATTGAGCT+TGG - chr7_4:20683433-20683452 Msa1144550:intron 35.0%
CCATTTCACGGAATCTAATT+TGG + chr7_4:20683555-20683574 None:intergenic 35.0%
CCAAATTAGATTCCGTGAAA+TGG - chr7_4:20683552-20683571 Msa1144550:intron 35.0%
!! TTTTGAAGGTAGCCATTTCA+CGG + chr7_4:20683567-20683586 None:intergenic 35.0%
! TATCGAGTTTGAAGCACTAA+TGG - chr7_4:20683813-20683832 Msa1144550:intron 35.0%
GGCAATTGTAGAAACAGTTA+GGG + chr7_4:20683944-20683963 None:intergenic 35.0%
AGGCAATTGTAGAAACAGTT+AGG + chr7_4:20683945-20683964 None:intergenic 35.0%
CTACAATTGCCTTCTTTCAA+AGG - chr7_4:20683953-20683972 Msa1144550:CDS 35.0%
!! CGGTTGATGGTAAGAAAAAT+AGG - chr7_4:20684179-20684198 Msa1144550:intron 35.0%
CCACTATCTCCTTTGTTAAT+AGG + chr7_4:20684219-20684238 None:intergenic 35.0%
CCTATTAACAAAGGAGATAG+TGG - chr7_4:20684216-20684235 Msa1144550:intron 35.0%
GCTATTGAAGTCCTGATTAT+TGG - chr7_4:20684370-20684389 Msa1144550:intron 35.0%
TATATCAGGGTCCAATAATC+AGG + chr7_4:20684384-20684403 None:intergenic 35.0%
CAGCATGAGTTTATCAACTA+CGG - chr7_4:20684433-20684452 Msa1144550:CDS 35.0%
AGATCCTTCTTTCCAATACA+GGG + chr7_4:20684697-20684716 None:intergenic 35.0%
AAGATCCTTCTTTCCAATAC+AGG + chr7_4:20684698-20684717 None:intergenic 35.0%
AAAGAAGGATCTTCAAGACT+TGG - chr7_4:20684705-20684724 Msa1144550:five_prime_UTR 35.0%
CAGCAATATTGTATTGAGCT+TGG - chr7_4:20683433-20683452 Msa1144550:intron 35.0%
CCATTTCACGGAATCTAATT+TGG + chr7_4:20683555-20683574 None:intergenic 35.0%
CCAAATTAGATTCCGTGAAA+TGG - chr7_4:20683552-20683571 Msa1144550:intron 35.0%
!! TTTTGAAGGTAGCCATTTCA+CGG + chr7_4:20683567-20683586 None:intergenic 35.0%
! TATCGAGTTTGAAGCACTAA+TGG - chr7_4:20683813-20683832 Msa1144550:intron 35.0%
GGCAATTGTAGAAACAGTTA+GGG + chr7_4:20683944-20683963 None:intergenic 35.0%
AGGCAATTGTAGAAACAGTT+AGG + chr7_4:20683945-20683964 None:intergenic 35.0%
CTACAATTGCCTTCTTTCAA+AGG - chr7_4:20683953-20683972 Msa1144550:CDS 35.0%
!! CGGTTGATGGTAAGAAAAAT+AGG - chr7_4:20684179-20684198 Msa1144550:intron 35.0%
CCACTATCTCCTTTGTTAAT+AGG + chr7_4:20684219-20684238 None:intergenic 35.0%
CCTATTAACAAAGGAGATAG+TGG - chr7_4:20684216-20684235 Msa1144550:intron 35.0%
GCTATTGAAGTCCTGATTAT+TGG - chr7_4:20684370-20684389 Msa1144550:intron 35.0%
TATATCAGGGTCCAATAATC+AGG + chr7_4:20684384-20684403 None:intergenic 35.0%
CAGCATGAGTTTATCAACTA+CGG - chr7_4:20684433-20684452 Msa1144550:CDS 35.0%
AGATCCTTCTTTCCAATACA+GGG + chr7_4:20684697-20684716 None:intergenic 35.0%
AAGATCCTTCTTTCCAATAC+AGG + chr7_4:20684698-20684717 None:intergenic 35.0%
AAAGAAGGATCTTCAAGACT+TGG - chr7_4:20684705-20684724 Msa1144550:five_prime_UTR 35.0%
TACCTTCAAAAGTTGCGCAA+AGG - chr7_4:20683576-20683595 Msa1144550:intron 40.0%
! GATCGCGACATAACTGTTTT+TGG - chr7_4:20683661-20683680 Msa1144550:intron 40.0%
TCTCCTTTGTTAATAGGGGT+GGG + chr7_4:20684213-20684232 None:intergenic 40.0%
ATCTCCTTTGTTAATAGGGG+TGG + chr7_4:20684214-20684233 None:intergenic 40.0%
GCATGCCATTCCTATAATGA+TGG + chr7_4:20684352-20684371 None:intergenic 40.0%
!! CGTAGTTGATAAACTCATGC+TGG + chr7_4:20684435-20684454 None:intergenic 40.0%
AGGATCTTCAAGACTTGGAT+TGG - chr7_4:20684710-20684729 Msa1144550:five_prime_UTR 40.0%
! TCTTCAAGACTTGGATTGGA+AGG - chr7_4:20684714-20684733 Msa1144550:five_prime_UTR 40.0%
TACCTTCAAAAGTTGCGCAA+AGG - chr7_4:20683576-20683595 Msa1144550:intron 40.0%
! GATCGCGACATAACTGTTTT+TGG - chr7_4:20683661-20683680 Msa1144550:intron 40.0%
TCTCCTTTGTTAATAGGGGT+GGG + chr7_4:20684213-20684232 None:intergenic 40.0%
ATCTCCTTTGTTAATAGGGG+TGG + chr7_4:20684214-20684233 None:intergenic 40.0%
GCATGCCATTCCTATAATGA+TGG + chr7_4:20684352-20684371 None:intergenic 40.0%
!! CGTAGTTGATAAACTCATGC+TGG + chr7_4:20684435-20684454 None:intergenic 40.0%
AGGATCTTCAAGACTTGGAT+TGG - chr7_4:20684710-20684729 Msa1144550:five_prime_UTR 40.0%
! TCTTCAAGACTTGGATTGGA+AGG - chr7_4:20684714-20684733 Msa1144550:five_prime_UTR 40.0%
! CTCCTTTGCGCAACTTTTGA+AGG + chr7_4:20683581-20683600 None:intergenic 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG - chr7_4:20683579-20683598 Msa1144550:intron 45.0%
TTCCTCGCTCATGCAAGAAA+CGG - chr7_4:20684159-20684178 Msa1144550:intron 45.0%
CTCATGCAAGAAACGGTTGA+TGG - chr7_4:20684166-20684185 Msa1144550:intron 45.0%
GTTCCCACCCCTATTAACAA+AGG - chr7_4:20684207-20684226 Msa1144550:intron 45.0%
TCTAGGTAGTCTCCCTGTAT+TGG - chr7_4:20684682-20684701 Msa1144550:five_prime_UTR 45.0%
GTCTCCCTGTATTGGAAAGA+AGG - chr7_4:20684690-20684709 Msa1144550:five_prime_UTR 45.0%
! CTCCTTTGCGCAACTTTTGA+AGG + chr7_4:20683581-20683600 None:intergenic 45.0%
CTTCAAAAGTTGCGCAAAGG+AGG - chr7_4:20683579-20683598 Msa1144550:intron 45.0%
TTCCTCGCTCATGCAAGAAA+CGG - chr7_4:20684159-20684178 Msa1144550:intron 45.0%
CTCATGCAAGAAACGGTTGA+TGG - chr7_4:20684166-20684185 Msa1144550:intron 45.0%
GTTCCCACCCCTATTAACAA+AGG - chr7_4:20684207-20684226 Msa1144550:intron 45.0%
TCTAGGTAGTCTCCCTGTAT+TGG - chr7_4:20684682-20684701 Msa1144550:five_prime_UTR 45.0%
GTCTCCCTGTATTGGAAAGA+AGG - chr7_4:20684690-20684709 Msa1144550:five_prime_UTR 45.0%
!! TATCTAAAAATATAAAAAAT+AGG - chr7_4:20684281-20684300 Msa1144550:intron 5.0%
!!! TTATTTTATTTTTTATATCA+GGG + chr7_4:20684397-20684416 None:intergenic 5.0%
!!! TTTATTTTATTTTTTATATC+AGG + chr7_4:20684398-20684417 None:intergenic 5.0%
!! TATCTAAAAATATAAAAAAT+AGG - chr7_4:20684281-20684300 Msa1144550:intron 5.0%
!!! TTATTTTATTTTTTATATCA+GGG + chr7_4:20684397-20684416 None:intergenic 5.0%
!!! TTTATTTTATTTTTTATATC+AGG + chr7_4:20684398-20684417 None:intergenic 5.0%
AACCGTTTCTTGCATGAGCG+AGG + chr7_4:20684164-20684183 None:intergenic 50.0%
AACCGTTTCTTGCATGAGCG+AGG + chr7_4:20684164-20684183 None:intergenic 50.0%
AGTTGCGCAAAGGAGGTGAC+AGG - chr7_4:20683586-20683605 Msa1144550:intron 55.0%
GTTGCGCAAAGGAGGTGACA+GGG - chr7_4:20683587-20683606 Msa1144550:intron 55.0%
AGGTGACAGGGCTGCTAGAT+CGG - chr7_4:20683599-20683618 Msa1144550:intron 55.0%
AGGGCTGCTAGATCGGAGAT+GGG - chr7_4:20683606-20683625 Msa1144550:intron 55.0%
GCTGCTGCAGAGATTGGAGA+TGG - chr7_4:20683639-20683658 Msa1144550:intron 55.0%
AGTTGCGCAAAGGAGGTGAC+AGG - chr7_4:20683586-20683605 Msa1144550:intron 55.0%
GTTGCGCAAAGGAGGTGACA+GGG - chr7_4:20683587-20683606 Msa1144550:intron 55.0%
AGGTGACAGGGCTGCTAGAT+CGG - chr7_4:20683599-20683618 Msa1144550:intron 55.0%
AGGGCTGCTAGATCGGAGAT+GGG - chr7_4:20683606-20683625 Msa1144550:intron 55.0%
GCTGCTGCAGAGATTGGAGA+TGG - chr7_4:20683639-20683658 Msa1144550:intron 55.0%
CAGGGCTGCTAGATCGGAGA+TGG - chr7_4:20683605-20683624 Msa1144550:intron 60.0%
CTGCTAGATCGGAGATGGGC+CGG - chr7_4:20683610-20683629 Msa1144550:intron 60.0%
TGCTAGATCGGAGATGGGCC+GGG - chr7_4:20683611-20683630 Msa1144550:intron 60.0%
GACGGAGCTGCTGCAGAGAT+TGG - chr7_4:20683633-20683652 Msa1144550:intron 60.0%
CAGGGCTGCTAGATCGGAGA+TGG - chr7_4:20683605-20683624 Msa1144550:intron 60.0%
CTGCTAGATCGGAGATGGGC+CGG - chr7_4:20683610-20683629 Msa1144550:intron 60.0%
TGCTAGATCGGAGATGGGCC+GGG - chr7_4:20683611-20683630 Msa1144550:intron 60.0%
GACGGAGCTGCTGCAGAGAT+TGG - chr7_4:20683633-20683652 Msa1144550:intron 60.0%
AGATCGGAGATGGGCCGGGA+CGG - chr7_4:20683615-20683634 Msa1144550:intron 65.0%
TCTCTGCAGCAGCTCCGTCC+CGG + chr7_4:20683632-20683651 None:intergenic 65.0%
AGATCGGAGATGGGCCGGGA+CGG - chr7_4:20683615-20683634 Msa1144550:intron 65.0%
TCTCTGCAGCAGCTCCGTCC+CGG + chr7_4:20683632-20683651 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 20683382 20684741 20683382 ID=Msa1144550;Name=Msa1144550
chr7_4 mRNA 20683382 20684741 20683382 ID=Msa1144550-mRNA-1;Parent=Msa1144550;Name=Msa1144550-mRNA-1;_AED=0.42;_eAED=0.48;_QI=189|0|0.5|1|0|0.5|4|0|104
chr7_4 exon 20683382 20683432 20683382 ID=Msa1144550-mRNA-1:exon:4959;Parent=Msa1144550-mRNA-1
chr7_4 exon 20683936 20684056 20683936 ID=Msa1144550-mRNA-1:exon:4958;Parent=Msa1144550-mRNA-1
chr7_4 exon 20684349 20684355 20684349 ID=Msa1144550-mRNA-1:exon:4957;Parent=Msa1144550-mRNA-1
chr7_4 exon 20684417 20684741 20684417 ID=Msa1144550-mRNA-1:exon:4956;Parent=Msa1144550-mRNA-1
chr7_4 five_prime_UTR 20684553 20684741 20684553 ID=Msa1144550-mRNA-1:five_prime_utr;Parent=Msa1144550-mRNA-1
chr7_4 CDS 20684417 20684552 20684417 ID=Msa1144550-mRNA-1:cds;Parent=Msa1144550-mRNA-1
chr7_4 CDS 20684349 20684355 20684349 ID=Msa1144550-mRNA-1:cds;Parent=Msa1144550-mRNA-1
chr7_4 CDS 20683936 20684056 20683936 ID=Msa1144550-mRNA-1:cds;Parent=Msa1144550-mRNA-1
chr7_4 CDS 20683382 20683432 20683382 ID=Msa1144550-mRNA-1:cds;Parent=Msa1144550-mRNA-1
Gene Sequence

>Msa1144550

ATGGCTACCTTCAAAAGTTGCGCAAAGGAGGTGACAGGGCTGCTAGATCGGAGATGGGCCGGGACGGAGCTGCTGCAGAGATTGGAGATGGATCGCGACATAACTGTTTTTGGTTCGATAGAACTCGCAAACCAAAAATGCAATGGTGAAAAGATGTCCAATGTCAAATGGTCTGAATATGTTGAAGTGAAAGGGAGAGTTAAATTACATGATTTCGAAAAATACATTCAAGAACTTCCTCGCTCATGCAAGAAACGGTTGATGTCTCCCTGTATTGGAAAGAAGGATCTTCAAGACTTGGATTGGAAGGCATAG
Protein sequence

>Msa1144550

MATFKSCAKEVTGLLDRRWAGTELLQRLEMDRDITVFGSIELANQKCNGEKMSNVKWSEYVEVKGRVKLHDFEKYIQELPRSCKKRLMSPCIGKKDLQDLDWKA*