Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144930 | XP_003631087.1 | 86.414 | 449 | 28 | 8 | 1 | 443 | 1 | 422 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144930 | sp|Q9FYS5|HMGYA_MAIZE | 35.321 | 218 | 100 | 6 | 32 | 249 | 10 | 186 | 2.51e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144930 | Q1SN01 | 86.414 | 449 | 28 | 8 | 1 | 443 | 1 | 422 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0929960 | Msa1144930 | 0.889989 | 1.477156e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144930 | MtrunA17_Chr8g0392851 | 86.414 | 449 | 28 | 8 | 1 | 443 | 1 | 422 | 0.0 | 625 |
| Msa1144930 | MtrunA17_Chr6g0482691 | 34.932 | 292 | 94 | 10 | 127 | 349 | 215 | 479 | 6.00e-27 | 113 |
| Msa1144930 | MtrunA17_Chr6g0482691 | 71.233 | 73 | 19 | 1 | 34 | 104 | 42 | 114 | 9.34e-24 | 103 |
| Msa1144930 | MtrunA17_Chr5g0434691 | 38.994 | 159 | 67 | 4 | 35 | 183 | 13 | 151 | 4.96e-20 | 88.2 |
| Msa1144930 | MtrunA17_Chr3g0110481 | 35.057 | 174 | 100 | 6 | 35 | 204 | 14 | 178 | 1.23e-13 | 69.3 |
| Msa1144930 | MtrunA17_Chr5g0405221 | 44.156 | 77 | 43 | 0 | 31 | 107 | 32 | 108 | 1.78e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144930 | AT3G18035.1 | 33.659 | 410 | 170 | 17 | 29 | 359 | 60 | 446 | 3.16e-35 | 136 |
| Msa1144930 | AT1G48620.1 | 34.225 | 374 | 154 | 17 | 37 | 332 | 78 | 437 | 7.21e-33 | 130 |
| Msa1144930 | AT3G18035.2 | 35.032 | 314 | 131 | 14 | 29 | 279 | 60 | 363 | 5.14e-25 | 106 |
| Msa1144930 | AT1G14900.1 | 38.889 | 144 | 52 | 4 | 35 | 172 | 24 | 137 | 8.12e-17 | 79.3 |
Find 202 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGACCTCTTTGGGTTAA+AGG | 0.177310 | 7_4:-21406500 | None:intergenic |
| CATCTCTTAATGGTGCTTTA+AGG | 0.229813 | 7_4:-21407782 | None:intergenic |
| ATACTTCTTGGGCCGGCCTC+TGG | 0.231487 | 7_4:-21406840 | None:intergenic |
| TCTGTGCCTGTGGCACTTGC+TGG | 0.231987 | 7_4:-21408004 | None:intergenic |
| TGGCCTTCCGGAGGGATTAA+TGG | 0.255647 | 7_4:-21406927 | None:intergenic |
| CCCACCACGGCAAGCTTCTT+AGG | 0.260962 | 7_4:-21406899 | None:intergenic |
| GATACATTAGCTTCATCTTC+TGG | 0.274717 | 7_4:-21406800 | None:intergenic |
| GATTTACATGGGCCTCAATT+TGG | 0.290617 | 7_4:+21408113 | Msa1144930:three_prime_UTR |
| GAGCCCATTGGACACAGATT+TGG | 0.290684 | 7_4:-21406675 | None:intergenic |
| CACCGCATCTGCATACTTCT+TGG | 0.297859 | 7_4:-21406852 | None:intergenic |
| TGTTGCAGCGGTTGTGGTTC+CGG | 0.309501 | 7_4:-21407828 | None:intergenic |
| TGAAGTGTTTCATCTCTTAA+TGG | 0.311071 | 7_4:-21407792 | None:intergenic |
| CAGCGCCGGTGGCACTGGTT+GGG | 0.311789 | 7_4:-21407961 | None:intergenic |
| CCTGTTGCTGCAATGGCATC+TGG | 0.319472 | 7_4:-21408046 | None:intergenic |
| TGGTCTCTAAATATTATTAC+AGG | 0.319558 | 7_4:-21408265 | None:intergenic |
| TGGGCGGCCAATTGGCCTTC+CGG | 0.321471 | 7_4:-21406939 | None:intergenic |
| TACTTCTTGGGCCGGCCTCT+GGG | 0.324206 | 7_4:-21406839 | None:intergenic |
| AGCCCATTGGACACAGATTT+GGG | 0.328566 | 7_4:-21406674 | None:intergenic |
| GCAGCGCCTGTGACACTGGC+TGG | 0.331592 | 7_4:-21407878 | None:intergenic |
| AGTGCGTGTCTATCTGTCTA+TGG | 0.332408 | 7_4:-21406002 | None:intergenic |
| ATGAGGTTGGGCTTGGACTT+AGG | 0.336448 | 7_4:-21406530 | None:intergenic |
| TGCTGCACCTGTTGCTGCAA+TGG | 0.336500 | 7_4:-21408053 | None:intergenic |
| ATTTGGTATGAGGTTGGGCT+TGG | 0.339854 | 7_4:-21406537 | None:intergenic |
| AAGGGAACGGTGGTGGGTAG+AGG | 0.347976 | 7_4:-21406161 | None:intergenic |
| ACGAAAACGGGCTGGGCATT+TGG | 0.348576 | 7_4:-21406554 | None:intergenic |
| CATGTAAATCTTCCTAGCTT+GGG | 0.356230 | 7_4:-21408100 | None:intergenic |
| TTGCCAGCATTTCTAACTCT+TGG | 0.356861 | 7_4:-21407752 | None:intergenic |
| CTATTGAGAGTGGGAGGTGG+AGG | 0.361661 | 7_4:-21406443 | None:intergenic |
| ATCACCTTTGGGCGGCCAAT+TGG | 0.362515 | 7_4:-21406947 | None:intergenic |
| GGAACGGTGGTGGGTAGAGG+TGG | 0.367498 | 7_4:-21406158 | None:intergenic |
| GGCCTTCCGGAGGGATTAAT+GGG | 0.369351 | 7_4:-21406926 | None:intergenic |
| TGGGCATTTGGTATGAGGTT+GGG | 0.370163 | 7_4:-21406542 | None:intergenic |
| ACGGTGGTGGGTAGAGGTGG+AGG | 0.374446 | 7_4:-21406155 | None:intergenic |
| CAGTGCATGTGGCACTTGTT+GGG | 0.380662 | 7_4:-21407919 | None:intergenic |
| GTTAGAAATGCTGGCAACTT+TGG | 0.382837 | 7_4:+21407758 | Msa1144930:CDS |
| GCAGTGCATGTGGCACTTGT+TGG | 0.389709 | 7_4:-21407920 | None:intergenic |
| CGGGCTGGGCATTTGGTATG+AGG | 0.389830 | 7_4:-21406547 | None:intergenic |
| CTGGGCATTTGGTATGAGGT+TGG | 0.395226 | 7_4:-21406543 | None:intergenic |
| AGCGCCGGTGGCACTGGTTG+GGG | 0.396155 | 7_4:-21407960 | None:intergenic |
| AGGACGACCACGACCTCTTT+GGG | 0.396456 | 7_4:-21406507 | None:intergenic |
| GAGGACGACCACGACCTCTT+TGG | 0.397582 | 7_4:-21406508 | None:intergenic |
| ACTTCAGCCACAGCAATTTC+CGG | 0.398242 | 7_4:+21407809 | Msa1144930:CDS |
| GTGGTGGGTAGAGGTGGAGG+AGG | 0.401260 | 7_4:-21406152 | None:intergenic |
| GGATCAAGCAAAAGAGCAAT+AGG | 0.402385 | 7_4:+21406284 | Msa1144930:CDS |
| GCAGCGCCGGTGGCACTGGT+TGG | 0.403759 | 7_4:-21407962 | None:intergenic |
| CTGTGCCTGTGGCACTTGCT+GGG | 0.404679 | 7_4:-21408003 | None:intergenic |
| GGAGGTGGAGGGAGTGAGGA+AGG | 0.407024 | 7_4:-21406431 | None:intergenic |
| GTAGTAGGAGGTAGGAAGTA+GGG | 0.408135 | 7_4:+21408170 | Msa1144930:three_prime_UTR |
| AGTGGGAGGTGGAGGGAGTG+AGG | 0.410669 | 7_4:-21406435 | None:intergenic |
| CCAGATGCCATTGCAGCAAC+AGG | 0.415754 | 7_4:+21408046 | Msa1144930:CDS |
| TTTGCAGCAATCAAAGGTTA+AGG | 0.422418 | 7_4:+21407665 | Msa1144930:intron |
| AGAGGGCGTGGACGTCCTCC+TGG | 0.422567 | 7_4:+21406623 | Msa1144930:CDS |
| AGATATGTAAAGCTAGTAGT+AGG | 0.428589 | 7_4:+21408155 | Msa1144930:three_prime_UTR |
| GCAAAAGGTATGACAGTTGT+TGG | 0.432627 | 7_4:-21406743 | None:intergenic |
| CAGCGCCTGTGACACTGGCT+GGG | 0.434222 | 7_4:-21407877 | None:intergenic |
| ACAGACACCACAGCAGTTGT+AGG | 0.434532 | 7_4:-21406596 | None:intergenic |
| CCATGTAAATCTTCCTAGCT+TGG | 0.443512 | 7_4:-21408101 | None:intergenic |
| ATTGCTGCAACTGCAGTGGC+TGG | 0.445073 | 7_4:-21407729 | None:intergenic |
| TCTATAAAATAGGGAGCAAA+AGG | 0.446309 | 7_4:+21407510 | Msa1144930:intron |
| GAACACAGTCATTAGATTCT+CGG | 0.447618 | 7_4:-21408204 | None:intergenic |
| CACGTGGTGGTGAGTGAAGT+TGG | 0.448823 | 7_4:-21406198 | None:intergenic |
| GATGGCAGCGCCTGTGACAC+TGG | 0.449654 | 7_4:-21407882 | None:intergenic |
| AGAAGCTTGCCGTGGTGGGC+AGG | 0.453200 | 7_4:+21406903 | Msa1144930:CDS |
| GAGGGTGAAGGGAACGGTGG+TGG | 0.454084 | 7_4:-21406168 | None:intergenic |
| AACAAGGTGCTGTGTTCTGC+TGG | 0.458813 | 7_4:-21406341 | None:intergenic |
| AGCTCTTGTTGCAGCGGTTG+TGG | 0.462434 | 7_4:-21407834 | None:intergenic |
| TGCTGAGATGGCAGCGCCGG+TGG | 0.462473 | 7_4:-21407972 | None:intergenic |
| GTTGGGTTGTTCGAGGGTGA+AGG | 0.465533 | 7_4:-21406180 | None:intergenic |
| TGGGGATGCAGTTGCTGAGA+TGG | 0.466658 | 7_4:-21407858 | None:intergenic |
| CCGGTGGCACTGGTTGGGGA+TGG | 0.467209 | 7_4:-21407956 | None:intergenic |
| AATCCCTCCGGAAGGCCAAT+TGG | 0.470273 | 7_4:+21406932 | Msa1144930:CDS |
| ACCGCATCTGCATACTTCTT+GGG | 0.471053 | 7_4:-21406851 | None:intergenic |
| GGACGACCCCGCCTTGTCGC+TGG | 0.472354 | 7_4:-21406878 | None:intergenic |
| ATCTGTCTATGGGGAAGGGA+AGG | 0.474510 | 7_4:-21405991 | None:intergenic |
| AGTAGTAGGAGGTAGGAAGT+AGG | 0.474865 | 7_4:+21408169 | Msa1144930:three_prime_UTR |
| TAAAGCTAGTAGTAGGAGGT+AGG | 0.475611 | 7_4:+21408162 | Msa1144930:three_prime_UTR |
| GATGGCAGCGCCGGTGGCAC+TGG | 0.477721 | 7_4:-21407966 | None:intergenic |
| TTGTTGGGTGCGACTGCGAT+TGG | 0.477868 | 7_4:-21406727 | None:intergenic |
| ACAACAGAAGGAAAGGGAAC+AGG | 0.483163 | 7_4:-21406776 | None:intergenic |
| AGCGCCTGTGACACTGGCTG+GGG | 0.483378 | 7_4:-21407876 | None:intergenic |
| TGGTGGGTAGAGGTGGAGGA+GGG | 0.485584 | 7_4:-21406151 | None:intergenic |
| TTCACTCCTTTAACCCAAAG+AGG | 0.486192 | 7_4:+21406494 | Msa1144930:CDS |
| ACAGCAGTTGTAGGAGGAGG+AGG | 0.488445 | 7_4:-21406587 | None:intergenic |
| GGCCCAAATCTGTGTCCAAT+GGG | 0.489592 | 7_4:+21406672 | Msa1144930:CDS |
| CTCAACCACTTGAAATCTGC+TGG | 0.490237 | 7_4:+21406374 | Msa1144930:CDS |
| TGGGGATGGAGTTGCTGAGA+TGG | 0.490708 | 7_4:-21407942 | None:intergenic |
| CATCTCAGCGTAAGGAGGAT+GGG | 0.490876 | 7_4:-21406225 | None:intergenic |
| AATCCAAGAGTTAGAAATGC+TGG | 0.492647 | 7_4:+21407749 | Msa1144930:CDS |
| GCGGCCAATTGGCCTTCCGG+AGG | 0.493639 | 7_4:-21406936 | None:intergenic |
| GCATCCCCAGCCAGTGTCAC+AGG | 0.494914 | 7_4:+21407872 | Msa1144930:CDS |
| GTGCGTGTCTATCTGTCTAT+GGG | 0.496529 | 7_4:-21406001 | None:intergenic |
| GGTGGTTCCAGCGACAAGGC+GGG | 0.496767 | 7_4:+21406871 | Msa1144930:CDS |
| AGGTGGAGGAGGGAGATCAA+AGG | 0.498529 | 7_4:-21406141 | None:intergenic |
| CTTTGGGTTAAAGGAGTGAA+AGG | 0.498701 | 7_4:-21406491 | None:intergenic |
| TCCTAAGAAGCTTGCCGTGG+TGG | 0.501049 | 7_4:+21406898 | Msa1144930:CDS |
| GAGTGAAGTTGGGTTGTTCG+AGG | 0.501548 | 7_4:-21406187 | None:intergenic |
| AGGACGTCGTTTGAGCCCAT+TGG | 0.502539 | 7_4:-21406687 | None:intergenic |
| GGCAGGCCCATTAATCCCTC+CGG | 0.503501 | 7_4:+21406920 | Msa1144930:CDS |
| CGGCCAATTGGCCTTCCGGA+GGG | 0.504424 | 7_4:-21406935 | None:intergenic |
| TAGCTTGGGGCTAAAGTATG+TGG | 0.505368 | 7_4:-21408086 | None:intergenic |
| TGTTGGGTGCGACTGCGATT+GGG | 0.505909 | 7_4:-21406726 | None:intergenic |
| TGGGGATGCAGTTGCTGAGA+TGG | 0.508395 | 7_4:-21407984 | None:intergenic |
| CGAGAGAAACGAAAACGGGC+TGG | 0.514942 | 7_4:-21406562 | None:intergenic |
| CCATCCCCAACCAGTGCCAC+CGG | 0.514985 | 7_4:+21407956 | Msa1144930:CDS |
| TCATCTTCTGGAACAACAGA+AGG | 0.518256 | 7_4:-21406788 | None:intergenic |
| CCAAGCTAGGAAGATTTACA+TGG | 0.520139 | 7_4:+21408101 | Msa1144930:exon |
| GTGGGTTCTTCGCCAAATTG+AGG | 0.521758 | 7_4:-21408125 | None:intergenic |
| TTCTGGAACAACAGAAGGAA+AGG | 0.523237 | 7_4:-21406783 | None:intergenic |
| ACAGGAGCAGCAGCAGCAAA+AGG | 0.523324 | 7_4:-21406758 | None:intergenic |
| AGGGTGAAGGGAACGGTGGT+GGG | 0.527527 | 7_4:-21406167 | None:intergenic |
| TTGTTCGAGGGTGAAGGGAA+CGG | 0.529100 | 7_4:-21406174 | None:intergenic |
| TCATCTCAGCGTAAGGAGGA+TGG | 0.530449 | 7_4:-21406226 | None:intergenic |
| TAGTAGGAGGTAGGAAGTAG+GGG | 0.530530 | 7_4:+21408171 | Msa1144930:three_prime_UTR |
| AATGGGCTCAAACGACGTCC+TGG | 0.531113 | 7_4:+21406689 | Msa1144930:CDS |
| GCATCCCCAGCAAGTGCCAC+AGG | 0.532601 | 7_4:+21407998 | Msa1144930:CDS |
| TGTCTATCTGTCTATGGGGA+AGG | 0.536821 | 7_4:-21405996 | None:intergenic |
| CCTAAGAAGCTTGCCGTGGT+GGG | 0.538381 | 7_4:+21406899 | Msa1144930:CDS |
| AGGGTCGAGAGAAACGAAAA+CGG | 0.539218 | 7_4:-21406567 | None:intergenic |
| TGGGGATGGAGTTGCTGAGA+TGG | 0.540504 | 7_4:-21407900 | None:intergenic |
| TCTGTCTATGGGGAAGGGAA+GGG | 0.540702 | 7_4:-21405990 | None:intergenic |
| CATGTGGCACTTGTTGGGGA+TGG | 0.542068 | 7_4:-21407914 | None:intergenic |
| TCAGATCTAACTCGATAAAG+AGG | 0.543241 | 7_4:+21406651 | Msa1144930:CDS |
| ACGTGGTGGTGAGTGAAGTT+GGG | 0.543540 | 7_4:-21406197 | None:intergenic |
| GAGAGAAACGAAAACGGGCT+GGG | 0.545382 | 7_4:-21406561 | None:intergenic |
| CAAAAGGTATGACAGTTGTT+GGG | 0.549504 | 7_4:-21406742 | None:intergenic |
| GAAGCACTGAAAGAGAAAGA+TGG | 0.550195 | 7_4:+21406263 | Msa1144930:CDS |
| AGGCCCAAATCTGTGTCCAA+TGG | 0.550214 | 7_4:+21406671 | Msa1144930:CDS |
| ATCAAAGGAAGTTGAGTCCA+TGG | 0.551511 | 7_4:-21406126 | None:intergenic |
| TATTGAGAGTGGGAGGTGGA+GGG | 0.551861 | 7_4:-21406442 | None:intergenic |
| GCGTCTGAAGCAAGTTGAGT+GGG | 0.552610 | 7_4:-21405933 | None:intergenic |
| GGGTCGAGAGAAACGAAAAC+GGG | 0.555283 | 7_4:-21406566 | None:intergenic |
| GCTCACTTTGCAGCAATCAA+AGG | 0.556497 | 7_4:+21407659 | Msa1144930:intron |
| GAGGGCGTGGACGTCCTCCT+GGG | 0.559128 | 7_4:+21406624 | Msa1144930:CDS |
| TTGGGTTGTTCGAGGGTGAA+GGG | 0.559588 | 7_4:-21406179 | None:intergenic |
| ACCACAGCAGTTGTAGGAGG+AGG | 0.560199 | 7_4:-21406590 | None:intergenic |
| AGTGAAGTTGGGTTGTTCGA+GGG | 0.560599 | 7_4:-21406186 | None:intergenic |
| TGTGCCTGTGGCACTTGCTG+GGG | 0.560848 | 7_4:-21408002 | None:intergenic |
| ATCTCAGCGTAAGGAGGATG+GGG | 0.561129 | 7_4:-21406224 | None:intergenic |
| AGTTGCTGAGATGGCAGCGC+CGG | 0.561561 | 7_4:-21407975 | None:intergenic |
| TTGTATATCATCTCAGCGTA+AGG | 0.563264 | 7_4:-21406233 | None:intergenic |
| TTGGATTGCTGCAACTGCAG+TGG | 0.565398 | 7_4:-21407733 | None:intergenic |
| TTGTCAATGAAGATCTAAGA+AGG | 0.565742 | 7_4:+21407541 | Msa1144930:CDS |
| GTCTATCTGTCTATGGGGAA+GGG | 0.570093 | 7_4:-21405995 | None:intergenic |
| AAGGCCAATTGGCCGCCCAA+AGG | 0.570612 | 7_4:+21406943 | Msa1144930:CDS |
| GGTCACAAGTGTAAGTGTAA+TGG | 0.572100 | 7_4:+21405966 | Msa1144930:five_prime_UTR |
| AGTGCATGTGGCACTTGTTG+GGG | 0.572287 | 7_4:-21407918 | None:intergenic |
| GTGGTCAGATCTATTGAGAG+TGG | 0.574173 | 7_4:-21406453 | None:intergenic |
| TTTGGGTTAAAGGAGTGAAA+GGG | 0.574578 | 7_4:-21406490 | None:intergenic |
| TGCTGAGATGGCAGTGCATG+TGG | 0.574705 | 7_4:-21407930 | None:intergenic |
| TATGTAAAGCTAGTAGTAGG+AGG | 0.575240 | 7_4:+21408158 | Msa1144930:three_prime_UTR |
| ATGTATCTGTTAGATCTACT+AGG | 0.575325 | 7_4:+21406816 | Msa1144930:CDS |
| GACACCACAGCAGTTGTAGG+AGG | 0.579333 | 7_4:-21406593 | None:intergenic |
| GTAGCATAAAACAAATTCAA+AGG | 0.579569 | 7_4:-21408226 | None:intergenic |
| GTAGACCAGCAGATTTCAAG+TGG | 0.580659 | 7_4:-21406379 | None:intergenic |
| TCTGGAACAACAGAAGGAAA+GGG | 0.582719 | 7_4:-21406782 | None:intergenic |
| GATCTATTGAGAGTGGGAGG+TGG | 0.583566 | 7_4:-21406446 | None:intergenic |
| GAGGATGGGGTGCCACGTGG+TGG | 0.584493 | 7_4:-21406211 | None:intergenic |
| TCCTCCTCCTACAACTGCTG+TGG | 0.585779 | 7_4:+21406589 | Msa1144930:CDS |
| GTGTCTGTTAAAAGAGGGCG+TGG | 0.587867 | 7_4:+21406611 | Msa1144930:CDS |
| ACATACTTTAGCCCCAAGCT+AGG | 0.588129 | 7_4:+21408088 | Msa1144930:CDS |
| CCTTTAACCCAAAGAGGTCG+TGG | 0.592542 | 7_4:+21406500 | Msa1144930:CDS |
| GAGTTAGATCTGAAAGTCCC+AGG | 0.592545 | 7_4:-21406641 | None:intergenic |
| CATCTGCATACTTCTTGGGC+CGG | 0.595405 | 7_4:-21406847 | None:intergenic |
| GATCTACTAGGCCCAGAGGC+CGG | 0.595741 | 7_4:+21406828 | Msa1144930:CDS |
| TGTTCATAATTCTGTGCCTG+TGG | 0.597800 | 7_4:-21408014 | None:intergenic |
| ATGTAAATCTTCCTAGCTTG+GGG | 0.601628 | 7_4:-21408099 | None:intergenic |
| TGGTCAGATCTATTGAGAGT+GGG | 0.603697 | 7_4:-21406452 | None:intergenic |
| ATTAATGGGCCTGCCCACCA+CGG | 0.604636 | 7_4:-21406912 | None:intergenic |
| GCCCAAGAAGTATGCAGATG+CGG | 0.606047 | 7_4:+21406850 | Msa1144930:CDS |
| CGGTGGTTCCAGCGACAAGG+CGG | 0.609470 | 7_4:+21406870 | Msa1144930:CDS |
| GCTGTGGTGTCTGTTAAAAG+AGG | 0.609515 | 7_4:+21406605 | Msa1144930:CDS |
| AGGTTGGGCTTGGACTTAGG+AGG | 0.610969 | 7_4:-21406527 | None:intergenic |
| GGACTTTGATGATCAAAGAG+AGG | 0.613003 | 7_4:-21407708 | None:intergenic |
| GGTCTCTAAATATTATTACA+GGG | 0.613347 | 7_4:-21408264 | None:intergenic |
| ATGCGGTGGTTCCAGCGACA+AGG | 0.614719 | 7_4:+21406867 | Msa1144930:CDS |
| AAGGAGGATGGGGTGCCACG+TGG | 0.617913 | 7_4:-21406214 | None:intergenic |
| GTGGTTCCAGCGACAAGGCG+GGG | 0.619166 | 7_4:+21406872 | Msa1144930:CDS |
| GGCCCATTAATCCCTCCGGA+AGG | 0.622991 | 7_4:+21406924 | Msa1144930:CDS |
| TATATCATCTCAGCGTAAGG+AGG | 0.625776 | 7_4:-21406230 | None:intergenic |
| TGCGTCTGAAGCAAGTTGAG+TGG | 0.627933 | 7_4:-21405934 | None:intergenic |
| GATGGCAGCTCTTGTTGCAG+CGG | 0.632179 | 7_4:-21407840 | None:intergenic |
| CAACAGAATCAGCAGTACAC+TGG | 0.632434 | 7_4:-21408285 | None:intergenic |
| AGTCCATGGTGAGTGAGCGA+CGG | 0.645514 | 7_4:-21406112 | None:intergenic |
| GTCTCTAAATATTATTACAG+GGG | 0.649469 | 7_4:-21408263 | None:intergenic |
| TCGTCCTAAGAAGCTTGCCG+TGG | 0.649764 | 7_4:+21406895 | Msa1144930:CDS |
| GATTAGATTAGAGTAACTAA+CGG | 0.650025 | 7_4:-21406049 | None:intergenic |
| CAGCAGTTGTAGGAGGAGGA+GGG | 0.658381 | 7_4:-21406586 | None:intergenic |
| ACATTAGGATCACCTTTGGG+CGG | 0.663242 | 7_4:-21406955 | None:intergenic |
| CAAGAAGTATGCAGATGCGG+TGG | 0.663985 | 7_4:+21406853 | Msa1144930:CDS |
| TGTGGTTCCGGAAATTGCTG+TGG | 0.664513 | 7_4:-21407816 | None:intergenic |
| TTCGAGGGTGAAGGGAACGG+TGG | 0.666611 | 7_4:-21406171 | None:intergenic |
| TCAGATCTATTGAGAGTGGG+AGG | 0.671854 | 7_4:-21406449 | None:intergenic |
| TGCGTGTCTATCTGTCTATG+GGG | 0.672689 | 7_4:-21406000 | None:intergenic |
| GTTGAGATGTTGTGTTAACA+AGG | 0.674763 | 7_4:-21406357 | None:intergenic |
| CTGTGGTGTCTGTTAAAAGA+GGG | 0.676730 | 7_4:+21406606 | Msa1144930:CDS |
| GCTTCAGACGCACACAACAC+AGG | 0.688086 | 7_4:+21405945 | Msa1144930:five_prime_UTR |
| CAAGCTAGGAAGATTTACAT+GGG | 0.692958 | 7_4:+21408102 | Msa1144930:exon |
| CGTCTGAAGCAAGTTGAGTG+GGG | 0.717849 | 7_4:-21405932 | None:intergenic |
| CAACTTCACTCACCACCACG+TGG | 0.718293 | 7_4:+21406199 | Msa1144930:CDS |
| AAGGGAGATGAGCTTCAGAG+TGG | 0.733637 | 7_4:-21406472 | None:intergenic |
| GTTAGATCTACTAGGCCCAG+AGG | 0.757336 | 7_4:+21406824 | Msa1144930:CDS |
| TTAGATCTGAAAGTCCCAGG+AGG | 0.781122 | 7_4:-21406638 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATCAAATCATTTA+GGG | - | chr7_4:21407087-21407106 | None:intergenic | 10.0% |
| !! | AATAATTAATCAAATCATTT+AGG | - | chr7_4:21407088-21407107 | None:intergenic | 10.0% |
| !! | AAATAATAAGATCAATTTGT+TGG | + | chr7_4:21407341-21407360 | Msa1144930:intron | 15.0% |
| !!! | TTTTATAGAAATTGAAAGAA+TGG | - | chr7_4:21407499-21407518 | None:intergenic | 15.0% |
| !! | TCTTTCAATTTCTATAAAAT+AGG | + | chr7_4:21407500-21407519 | Msa1144930:intron | 15.0% |
| !! | CTTTCAATTTCTATAAAATA+GGG | + | chr7_4:21407501-21407520 | Msa1144930:intron | 15.0% |
| !! | AACAATAAAAACTCAACATT+AGG | - | chr7_4:21406973-21406992 | None:intergenic | 20.0% |
| !!! | AGAGATATTTTAACATACTT+TGG | + | chr7_4:21407432-21407451 | Msa1144930:intron | 20.0% |
| !!! | TTTACATATCTTTTACAAGT+GGG | - | chr7_4:21408146-21408165 | None:intergenic | 20.0% |
| !!! | ATTTAGAACAATGCTTTTAT+TGG | + | chr7_4:21408328-21408347 | Msa1144930:three_prime_UTR | 20.0% |
| ! | GATTAGATTAGAGTAACTAA+CGG | - | chr7_4:21406052-21406071 | None:intergenic | 25.0% |
| ! | AAACACACATAAATAGATGA+AGG | - | chr7_4:21406997-21407016 | None:intergenic | 25.0% |
| !!! | TAATTTGACTTGCCTTATTT+TGG | + | chr7_4:21407024-21407043 | Msa1144930:intron | 25.0% |
| !!! | ATTGACTTTTGCAACTATAT+TGG | + | chr7_4:21407136-21407155 | Msa1144930:intron | 25.0% |
| !! | CTTTACATATCTTTTACAAG+TGG | - | chr7_4:21408147-21408166 | None:intergenic | 25.0% |
| ! | GTAGCATAAAACAAATTCAA+AGG | - | chr7_4:21408229-21408248 | None:intergenic | 25.0% |
| ! | GTCTCTAAATATTATTACAG+GGG | - | chr7_4:21408266-21408285 | None:intergenic | 25.0% |
| ! | GGTCTCTAAATATTATTACA+GGG | - | chr7_4:21408267-21408286 | None:intergenic | 25.0% |
| ! | TGGTCTCTAAATATTATTAC+AGG | - | chr7_4:21408268-21408287 | None:intergenic | 25.0% |
| ATGTATCTGTTAGATCTACT+AGG | + | chr7_4:21406816-21406835 | Msa1144930:CDS | 30.0% | |
| TCTCATACTAGACCAAAATA+AGG | - | chr7_4:21407039-21407058 | None:intergenic | 30.0% | |
| ! | TTTTGGTCTAGTATGAGATT+AGG | + | chr7_4:21407041-21407060 | Msa1144930:intron | 30.0% |
| TTTGGTCTAGTATGAGATTA+GGG | + | chr7_4:21407042-21407061 | Msa1144930:intron | 30.0% | |
| TATAGTTGCAAAAGTCAATG+TGG | - | chr7_4:21407135-21407154 | None:intergenic | 30.0% | |
| CACATTTATCTTGAAAACGA+AGG | + | chr7_4:21407162-21407181 | Msa1144930:intron | 30.0% | |
| AGTAATTAAGCAAGTAGAGA+AGG | + | chr7_4:21407271-21407290 | Msa1144930:intron | 30.0% | |
| !! | TAAGATCAATTTGTTGGCTT+TGG | + | chr7_4:21407347-21407366 | Msa1144930:intron | 30.0% |
| !! | TTGGCTTTGGAACATATATT+TGG | + | chr7_4:21407360-21407379 | Msa1144930:intron | 30.0% |
| TCTATAAAATAGGGAGCAAA+AGG | + | chr7_4:21407510-21407529 | Msa1144930:intron | 30.0% | |
| TTGTCAATGAAGATCTAAGA+AGG | + | chr7_4:21407541-21407560 | Msa1144930:CDS | 30.0% | |
| ! | TGAAGTGTTTCATCTCTTAA+TGG | - | chr7_4:21407795-21407814 | None:intergenic | 30.0% |
| AGATATGTAAAGCTAGTAGT+AGG | + | chr7_4:21408155-21408174 | Msa1144930:three_prime_UTR | 30.0% | |
| ! | CGGTAGATTCGAGAATTTTT+GGG | - | chr7_4:21406095-21406114 | None:intergenic | 35.0% |
| ! | ACGGTAGATTCGAGAATTTT+TGG | - | chr7_4:21406096-21406115 | None:intergenic | 35.0% |
| TTGTATATCATCTCAGCGTA+AGG | - | chr7_4:21406236-21406255 | None:intergenic | 35.0% | |
| GTTGAGATGTTGTGTTAACA+AGG | - | chr7_4:21406360-21406379 | None:intergenic | 35.0% | |
| ! | TTTGGGTTAAAGGAGTGAAA+GGG | - | chr7_4:21406493-21406512 | None:intergenic | 35.0% |
| TCAGATCTAACTCGATAAAG+AGG | + | chr7_4:21406651-21406670 | Msa1144930:CDS | 35.0% | |
| ! | CAAAAGGTATGACAGTTGTT+GGG | - | chr7_4:21406745-21406764 | None:intergenic | 35.0% |
| ! | GATACATTAGCTTCATCTTC+TGG | - | chr7_4:21406803-21406822 | None:intergenic | 35.0% |
| TCAACATTAGGATCACCTTT+GGG | - | chr7_4:21406961-21406980 | None:intergenic | 35.0% | |
| TTGGTCTAGTATGAGATTAG+GGG | + | chr7_4:21407043-21407062 | Msa1144930:intron | 35.0% | |
| GTGATAAACAACAAAGCAGA+TGG | + | chr7_4:21407198-21407217 | Msa1144930:intron | 35.0% | |
| TTTGCAGCAATCAAAGGTTA+AGG | + | chr7_4:21407665-21407684 | Msa1144930:intron | 35.0% | |
| AATCCAAGAGTTAGAAATGC+TGG | + | chr7_4:21407749-21407768 | Msa1144930:CDS | 35.0% | |
| CATCTCTTAATGGTGCTTTA+AGG | - | chr7_4:21407785-21407804 | None:intergenic | 35.0% | |
| ATGTAAATCTTCCTAGCTTG+GGG | - | chr7_4:21408102-21408121 | None:intergenic | 35.0% | |
| CATGTAAATCTTCCTAGCTT+GGG | - | chr7_4:21408103-21408122 | None:intergenic | 35.0% | |
| CAAGCTAGGAAGATTTACAT+GGG | + | chr7_4:21408102-21408121 | Msa1144930:exon | 35.0% | |
| TATGTAAAGCTAGTAGTAGG+AGG | + | chr7_4:21408158-21408177 | Msa1144930:three_prime_UTR | 35.0% | |
| GAACACAGTCATTAGATTCT+CGG | - | chr7_4:21408207-21408226 | None:intergenic | 35.0% | |
| GGTCACAAGTGTAAGTGTAA+TGG | + | chr7_4:21405966-21405985 | Msa1144930:five_prime_UTR | 40.0% | |
| ATCAAAGGAAGTTGAGTCCA+TGG | - | chr7_4:21406129-21406148 | None:intergenic | 40.0% | |
| TATATCATCTCAGCGTAAGG+AGG | - | chr7_4:21406233-21406252 | None:intergenic | 40.0% | |
| !! | GAAGCACTGAAAGAGAAAGA+TGG | + | chr7_4:21406263-21406282 | Msa1144930:CDS | 40.0% |
| GGATCAAGCAAAAGAGCAAT+AGG | + | chr7_4:21406284-21406303 | Msa1144930:CDS | 40.0% | |
| TGGTCAGATCTATTGAGAGT+GGG | - | chr7_4:21406455-21406474 | None:intergenic | 40.0% | |
| ! | CTTTGGGTTAAAGGAGTGAA+AGG | - | chr7_4:21406494-21406513 | None:intergenic | 40.0% |
| TTCACTCCTTTAACCCAAAG+AGG | + | chr7_4:21406494-21406513 | Msa1144930:CDS | 40.0% | |
| CTGTGGTGTCTGTTAAAAGA+GGG | + | chr7_4:21406606-21406625 | Msa1144930:CDS | 40.0% | |
| ! | GCAAAAGGTATGACAGTTGT+TGG | - | chr7_4:21406746-21406765 | None:intergenic | 40.0% |
| ! | TCTGGAACAACAGAAGGAAA+GGG | - | chr7_4:21406785-21406804 | None:intergenic | 40.0% |
| !! | TTCTGGAACAACAGAAGGAA+AGG | - | chr7_4:21406786-21406805 | None:intergenic | 40.0% |
| !! | TCATCTTCTGGAACAACAGA+AGG | - | chr7_4:21406791-21406810 | None:intergenic | 40.0% |
| CTCAACATTAGGATCACCTT+TGG | - | chr7_4:21406962-21406981 | None:intergenic | 40.0% | |
| GTAAACATTCTCGTGCTATG+TGG | + | chr7_4:21407389-21407408 | Msa1144930:intron | 40.0% | |
| GCAAAGTGAGCAAACAATAG+AGG | - | chr7_4:21407650-21407669 | None:intergenic | 40.0% | |
| ! | GGACTTTGATGATCAAAGAG+AGG | - | chr7_4:21407711-21407730 | None:intergenic | 40.0% |
| TTGCCAGCATTTCTAACTCT+TGG | - | chr7_4:21407755-21407774 | None:intergenic | 40.0% | |
| GTTAGAAATGCTGGCAACTT+TGG | + | chr7_4:21407758-21407777 | Msa1144930:CDS | 40.0% | |
| TGTTCATAATTCTGTGCCTG+TGG | - | chr7_4:21408017-21408036 | None:intergenic | 40.0% | |
| CCATGTAAATCTTCCTAGCT+TGG | - | chr7_4:21408104-21408123 | None:intergenic | 40.0% | |
| CCAAGCTAGGAAGATTTACA+TGG | + | chr7_4:21408101-21408120 | Msa1144930:exon | 40.0% | |
| GATTTACATGGGCCTCAATT+TGG | + | chr7_4:21408113-21408132 | Msa1144930:three_prime_UTR | 40.0% | |
| TAAAGCTAGTAGTAGGAGGT+AGG | + | chr7_4:21408162-21408181 | Msa1144930:three_prime_UTR | 40.0% | |
| GTCTATCTGTCTATGGGGAA+GGG | - | chr7_4:21405998-21406017 | None:intergenic | 45.0% | |
| TGTCTATCTGTCTATGGGGA+AGG | - | chr7_4:21405999-21406018 | None:intergenic | 45.0% | |
| TGCGTGTCTATCTGTCTATG+GGG | - | chr7_4:21406003-21406022 | None:intergenic | 45.0% | |
| GTGCGTGTCTATCTGTCTAT+GGG | - | chr7_4:21406004-21406023 | None:intergenic | 45.0% | |
| AGTGCGTGTCTATCTGTCTA+TGG | - | chr7_4:21406005-21406024 | None:intergenic | 45.0% | |
| ! | AGTGAAGTTGGGTTGTTCGA+GGG | - | chr7_4:21406189-21406208 | None:intergenic | 45.0% |
| CTCAACCACTTGAAATCTGC+TGG | + | chr7_4:21406374-21406393 | Msa1144930:CDS | 45.0% | |
| GTAGACCAGCAGATTTCAAG+TGG | - | chr7_4:21406382-21406401 | None:intergenic | 45.0% | |
| TCAGATCTATTGAGAGTGGG+AGG | - | chr7_4:21406452-21406471 | None:intergenic | 45.0% | |
| GTGGTCAGATCTATTGAGAG+TGG | - | chr7_4:21406456-21406475 | None:intergenic | 45.0% | |
| ATTTGGTATGAGGTTGGGCT+TGG | - | chr7_4:21406540-21406559 | None:intergenic | 45.0% | |
| TGGGCATTTGGTATGAGGTT+GGG | - | chr7_4:21406545-21406564 | None:intergenic | 45.0% | |
| AGGGTCGAGAGAAACGAAAA+CGG | - | chr7_4:21406570-21406589 | None:intergenic | 45.0% | |
| GCTGTGGTGTCTGTTAAAAG+AGG | + | chr7_4:21406605-21406624 | Msa1144930:CDS | 45.0% | |
| TTAGATCTGAAAGTCCCAGG+AGG | - | chr7_4:21406641-21406660 | None:intergenic | 45.0% | |
| GAGTTAGATCTGAAAGTCCC+AGG | - | chr7_4:21406644-21406663 | None:intergenic | 45.0% | |
| AGCCCATTGGACACAGATTT+GGG | - | chr7_4:21406677-21406696 | None:intergenic | 45.0% | |
| ACAACAGAAGGAAAGGGAAC+AGG | - | chr7_4:21406779-21406798 | None:intergenic | 45.0% | |
| ACCGCATCTGCATACTTCTT+GGG | - | chr7_4:21406854-21406873 | None:intergenic | 45.0% | |
| ACATTAGGATCACCTTTGGG+CGG | - | chr7_4:21406958-21406977 | None:intergenic | 45.0% | |
| GCTCACTTTGCAGCAATCAA+AGG | + | chr7_4:21407659-21407678 | Msa1144930:intron | 45.0% | |
| ACTTCAGCCACAGCAATTTC+CGG | + | chr7_4:21407809-21407828 | Msa1144930:CDS | 45.0% | |
| TAGCTTGGGGCTAAAGTATG+TGG | - | chr7_4:21408089-21408108 | None:intergenic | 45.0% | |
| ACATACTTTAGCCCCAAGCT+AGG | + | chr7_4:21408088-21408107 | Msa1144930:CDS | 45.0% | |
| AGTAGTAGGAGGTAGGAAGT+AGG | + | chr7_4:21408169-21408188 | Msa1144930:three_prime_UTR | 45.0% | |
| GTAGTAGGAGGTAGGAAGTA+GGG | + | chr7_4:21408170-21408189 | Msa1144930:three_prime_UTR | 45.0% | |
| TAGTAGGAGGTAGGAAGTAG+GGG | + | chr7_4:21408171-21408190 | Msa1144930:three_prime_UTR | 45.0% | |
| CAACAGAATCAGCAGTACAC+TGG | - | chr7_4:21408288-21408307 | None:intergenic | 45.0% | |
| !!! | AAAAATCTTTAATTTATAAA+GGG | - | chr7_4:21407461-21407480 | None:intergenic | 5.0% |
| !!! | AAAAAATCTTTAATTTATAA+AGG | - | chr7_4:21407462-21407481 | None:intergenic | 5.0% |
| ! | CGTCTGAAGCAAGTTGAGTG+GGG | - | chr7_4:21405935-21405954 | None:intergenic | 50.0% |
| ! | GCGTCTGAAGCAAGTTGAGT+GGG | - | chr7_4:21405936-21405955 | None:intergenic | 50.0% |
| ! | TGCGTCTGAAGCAAGTTGAG+TGG | - | chr7_4:21405937-21405956 | None:intergenic | 50.0% |
| TCTGTCTATGGGGAAGGGAA+GGG | - | chr7_4:21405993-21406012 | None:intergenic | 50.0% | |
| ATCTGTCTATGGGGAAGGGA+AGG | - | chr7_4:21405994-21406013 | None:intergenic | 50.0% | |
| TTGTTCGAGGGTGAAGGGAA+CGG | - | chr7_4:21406177-21406196 | None:intergenic | 50.0% | |
| ! | TTGGGTTGTTCGAGGGTGAA+GGG | - | chr7_4:21406182-21406201 | None:intergenic | 50.0% |
| ! | GAGTGAAGTTGGGTTGTTCG+AGG | - | chr7_4:21406190-21406209 | None:intergenic | 50.0% |
| ! | ACGTGGTGGTGAGTGAAGTT+GGG | - | chr7_4:21406200-21406219 | None:intergenic | 50.0% |
| ATCTCAGCGTAAGGAGGATG+GGG | - | chr7_4:21406227-21406246 | None:intergenic | 50.0% | |
| CATCTCAGCGTAAGGAGGAT+GGG | - | chr7_4:21406228-21406247 | None:intergenic | 50.0% | |
| TCATCTCAGCGTAAGGAGGA+TGG | - | chr7_4:21406229-21406248 | None:intergenic | 50.0% | |
| !! | AACAAGGTGCTGTGTTCTGC+TGG | - | chr7_4:21406344-21406363 | None:intergenic | 50.0% |
| TATTGAGAGTGGGAGGTGGA+GGG | - | chr7_4:21406445-21406464 | None:intergenic | 50.0% | |
| GATCTATTGAGAGTGGGAGG+TGG | - | chr7_4:21406449-21406468 | None:intergenic | 50.0% | |
| AAGGGAGATGAGCTTCAGAG+TGG | - | chr7_4:21406475-21406494 | None:intergenic | 50.0% | |
| ! | CCACGACCTCTTTGGGTTAA+AGG | - | chr7_4:21406503-21406522 | None:intergenic | 50.0% |
| CCTTTAACCCAAAGAGGTCG+TGG | + | chr7_4:21406500-21406519 | Msa1144930:CDS | 50.0% | |
| ATGAGGTTGGGCTTGGACTT+AGG | - | chr7_4:21406533-21406552 | None:intergenic | 50.0% | |
| CTGGGCATTTGGTATGAGGT+TGG | - | chr7_4:21406546-21406565 | None:intergenic | 50.0% | |
| ! | GAGAGAAACGAAAACGGGCT+GGG | - | chr7_4:21406564-21406583 | None:intergenic | 50.0% |
| GGGTCGAGAGAAACGAAAAC+GGG | - | chr7_4:21406569-21406588 | None:intergenic | 50.0% | |
| ACAGACACCACAGCAGTTGT+AGG | - | chr7_4:21406599-21406618 | None:intergenic | 50.0% | |
| GTGTCTGTTAAAAGAGGGCG+TGG | + | chr7_4:21406611-21406630 | Msa1144930:CDS | 50.0% | |
| AGGCCCAAATCTGTGTCCAA+TGG | + | chr7_4:21406671-21406690 | Msa1144930:CDS | 50.0% | |
| GGCCCAAATCTGTGTCCAAT+GGG | + | chr7_4:21406672-21406691 | Msa1144930:CDS | 50.0% | |
| GAGCCCATTGGACACAGATT+TGG | - | chr7_4:21406678-21406697 | None:intergenic | 50.0% | |
| !!! | GACTGCGATTGGGTTTTAGG+CGG | - | chr7_4:21406719-21406738 | None:intergenic | 50.0% |
| ! | TGCGACTGCGATTGGGTTTT+AGG | - | chr7_4:21406722-21406741 | None:intergenic | 50.0% |
| GTTAGATCTACTAGGCCCAG+AGG | + | chr7_4:21406824-21406843 | Msa1144930:CDS | 50.0% | |
| CATCTGCATACTTCTTGGGC+CGG | - | chr7_4:21406850-21406869 | None:intergenic | 50.0% | |
| ! | GCCCAAGAAGTATGCAGATG+CGG | + | chr7_4:21406850-21406869 | Msa1144930:CDS | 50.0% |
| CACCGCATCTGCATACTTCT+TGG | - | chr7_4:21406855-21406874 | None:intergenic | 50.0% | |
| ! | CAAGAAGTATGCAGATGCGG+TGG | + | chr7_4:21406853-21406872 | Msa1144930:CDS | 50.0% |
| TTGGATTGCTGCAACTGCAG+TGG | - | chr7_4:21407736-21407755 | None:intergenic | 50.0% | |
| TGTGGTTCCGGAAATTGCTG+TGG | - | chr7_4:21407819-21407838 | None:intergenic | 50.0% | |
| ! | AGTGCATGTGGCACTTGTTG+GGG | - | chr7_4:21407921-21407940 | None:intergenic | 50.0% |
| CAGTGCATGTGGCACTTGTT+GGG | - | chr7_4:21407922-21407941 | None:intergenic | 50.0% | |
| GTGGGTTCTTCGCCAAATTG+AGG | - | chr7_4:21408128-21408147 | None:intergenic | 50.0% | |
| GCTTCAGACGCACACAACAC+AGG | + | chr7_4:21405945-21405964 | Msa1144930:five_prime_UTR | 55.0% | |
| AGTCCATGGTGAGTGAGCGA+CGG | - | chr7_4:21406115-21406134 | None:intergenic | 55.0% | |
| AGGTGGAGGAGGGAGATCAA+AGG | - | chr7_4:21406144-21406163 | None:intergenic | 55.0% | |
| ! | GTTGGGTTGTTCGAGGGTGA+AGG | - | chr7_4:21406183-21406202 | None:intergenic | 55.0% |
| ! | CACGTGGTGGTGAGTGAAGT+TGG | - | chr7_4:21406201-21406220 | None:intergenic | 55.0% |
| CAACTTCACTCACCACCACG+TGG | + | chr7_4:21406199-21406218 | Msa1144930:CDS | 55.0% | |
| CTATTGAGAGTGGGAGGTGG+AGG | - | chr7_4:21406446-21406465 | None:intergenic | 55.0% | |
| AGGACGACCACGACCTCTTT+GGG | - | chr7_4:21406510-21406529 | None:intergenic | 55.0% | |
| AGGTTGGGCTTGGACTTAGG+AGG | - | chr7_4:21406530-21406549 | None:intergenic | 55.0% | |
| !! | ACGAAAACGGGCTGGGCATT+TGG | - | chr7_4:21406557-21406576 | None:intergenic | 55.0% |
| CGAGAGAAACGAAAACGGGC+TGG | - | chr7_4:21406565-21406584 | None:intergenic | 55.0% | |
| CAGCAGTTGTAGGAGGAGGA+GGG | - | chr7_4:21406589-21406608 | None:intergenic | 55.0% | |
| ACAGCAGTTGTAGGAGGAGG+AGG | - | chr7_4:21406590-21406609 | None:intergenic | 55.0% | |
| TCCTCCTCCTACAACTGCTG+TGG | + | chr7_4:21406589-21406608 | Msa1144930:CDS | 55.0% | |
| ACCACAGCAGTTGTAGGAGG+AGG | - | chr7_4:21406593-21406612 | None:intergenic | 55.0% | |
| GACACCACAGCAGTTGTAGG+AGG | - | chr7_4:21406596-21406615 | None:intergenic | 55.0% | |
| AGGACGTCGTTTGAGCCCAT+TGG | - | chr7_4:21406690-21406709 | None:intergenic | 55.0% | |
| ! | AATGGGCTCAAACGACGTCC+TGG | + | chr7_4:21406689-21406708 | Msa1144930:CDS | 55.0% |
| TGTTGGGTGCGACTGCGATT+GGG | - | chr7_4:21406729-21406748 | None:intergenic | 55.0% | |
| TTGTTGGGTGCGACTGCGAT+TGG | - | chr7_4:21406730-21406749 | None:intergenic | 55.0% | |
| ACAGGAGCAGCAGCAGCAAA+AGG | - | chr7_4:21406761-21406780 | None:intergenic | 55.0% | |
| TCGTCCTAAGAAGCTTGCCG+TGG | + | chr7_4:21406895-21406914 | Msa1144930:CDS | 55.0% | |
| TCCTAAGAAGCTTGCCGTGG+TGG | + | chr7_4:21406898-21406917 | Msa1144930:CDS | 55.0% | |
| CCTAAGAAGCTTGCCGTGGT+GGG | + | chr7_4:21406899-21406918 | Msa1144930:CDS | 55.0% | |
| ! | ATTAATGGGCCTGCCCACCA+CGG | - | chr7_4:21406915-21406934 | None:intergenic | 55.0% |
| GGCCTTCCGGAGGGATTAAT+GGG | - | chr7_4:21406929-21406948 | None:intergenic | 55.0% | |
| TGGCCTTCCGGAGGGATTAA+TGG | - | chr7_4:21406930-21406949 | None:intergenic | 55.0% | |
| AATCCCTCCGGAAGGCCAAT+TGG | + | chr7_4:21406932-21406951 | Msa1144930:CDS | 55.0% | |
| ATCACCTTTGGGCGGCCAAT+TGG | - | chr7_4:21406950-21406969 | None:intergenic | 55.0% | |
| ATTGCTGCAACTGCAGTGGC+TGG | - | chr7_4:21407732-21407751 | None:intergenic | 55.0% | |
| TGTTGCAGCGGTTGTGGTTC+CGG | - | chr7_4:21407831-21407850 | None:intergenic | 55.0% | |
| AGCTCTTGTTGCAGCGGTTG+TGG | - | chr7_4:21407837-21407856 | None:intergenic | 55.0% | |
| GATGGCAGCTCTTGTTGCAG+CGG | - | chr7_4:21407843-21407862 | None:intergenic | 55.0% | |
| TGGGGATGCAGTTGCTGAGA+TGG | - | chr7_4:21407861-21407880 | None:intergenic | 55.0% | |
| TGGGGATGGAGTTGCTGAGA+TGG | - | chr7_4:21407903-21407922 | None:intergenic | 55.0% | |
| ! | CATGTGGCACTTGTTGGGGA+TGG | - | chr7_4:21407917-21407936 | None:intergenic | 55.0% |
| GCAGTGCATGTGGCACTTGT+TGG | - | chr7_4:21407923-21407942 | None:intergenic | 55.0% | |
| TGCTGAGATGGCAGTGCATG+TGG | - | chr7_4:21407933-21407952 | None:intergenic | 55.0% | |
| TGGGGATGGAGTTGCTGAGA+TGG | - | chr7_4:21407903-21407922 | None:intergenic | 55.0% | |
| TGGGGATGCAGTTGCTGAGA+TGG | - | chr7_4:21407861-21407880 | None:intergenic | 55.0% | |
| CCTGTTGCTGCAATGGCATC+TGG | - | chr7_4:21408049-21408068 | None:intergenic | 55.0% | |
| CCAGATGCCATTGCAGCAAC+AGG | + | chr7_4:21408046-21408065 | Msa1144930:CDS | 55.0% | |
| TGCTGCACCTGTTGCTGCAA+TGG | - | chr7_4:21408056-21408075 | None:intergenic | 55.0% | |
| CTACCGTCGCTCACTCACCA+TGG | + | chr7_4:21406109-21406128 | Msa1144930:exon | 60.0% | |
| ! | TGGTGGGTAGAGGTGGAGGA+GGG | - | chr7_4:21406154-21406173 | None:intergenic | 60.0% |
| !! | AAGGGAACGGTGGTGGGTAG+AGG | - | chr7_4:21406164-21406183 | None:intergenic | 60.0% |
| AGGGTGAAGGGAACGGTGGT+GGG | - | chr7_4:21406170-21406189 | None:intergenic | 60.0% | |
| TTCGAGGGTGAAGGGAACGG+TGG | - | chr7_4:21406174-21406193 | None:intergenic | 60.0% | |
| GAGGACGACCACGACCTCTT+TGG | - | chr7_4:21406511-21406530 | None:intergenic | 60.0% | |
| ! | CGGGCTGGGCATTTGGTATG+AGG | - | chr7_4:21406550-21406569 | None:intergenic | 60.0% |
| !!! | TGGGTTTTAGGCGGACGACC+AGG | - | chr7_4:21406710-21406729 | None:intergenic | 60.0% |
| GATCTACTAGGCCCAGAGGC+CGG | + | chr7_4:21406828-21406847 | Msa1144930:CDS | 60.0% | |
| TACTTCTTGGGCCGGCCTCT+GGG | - | chr7_4:21406842-21406861 | None:intergenic | 60.0% | |
| ATACTTCTTGGGCCGGCCTC+TGG | - | chr7_4:21406843-21406862 | None:intergenic | 60.0% | |
| ATGCGGTGGTTCCAGCGACA+AGG | + | chr7_4:21406867-21406886 | Msa1144930:CDS | 60.0% | |
| CCCACCACGGCAAGCTTCTT+AGG | - | chr7_4:21406902-21406921 | None:intergenic | 60.0% | |
| GGCAGGCCCATTAATCCCTC+CGG | + | chr7_4:21406920-21406939 | Msa1144930:CDS | 60.0% | |
| GGCCCATTAATCCCTCCGGA+AGG | + | chr7_4:21406924-21406943 | Msa1144930:CDS | 60.0% | |
| AAGGCCAATTGGCCGCCCAA+AGG | + | chr7_4:21406943-21406962 | Msa1144930:CDS | 60.0% | |
| AGTTGCTGAGATGGCAGCGC+CGG | - | chr7_4:21407894-21407913 | None:intergenic | 60.0% | |
| ! | TGTGCCTGTGGCACTTGCTG+GGG | - | chr7_4:21408005-21408024 | None:intergenic | 60.0% |
| CTGTGCCTGTGGCACTTGCT+GGG | - | chr7_4:21408006-21408025 | None:intergenic | 60.0% | |
| TCTGTGCCTGTGGCACTTGC+TGG | - | chr7_4:21408007-21408026 | None:intergenic | 60.0% | |
| !! | GTGGTGGGTAGAGGTGGAGG+AGG | - | chr7_4:21406155-21406174 | None:intergenic | 65.0% |
| !! | ACGGTGGTGGGTAGAGGTGG+AGG | - | chr7_4:21406158-21406177 | None:intergenic | 65.0% |
| !! | GGAACGGTGGTGGGTAGAGG+TGG | - | chr7_4:21406161-21406180 | None:intergenic | 65.0% |
| GAGGGTGAAGGGAACGGTGG+TGG | - | chr7_4:21406171-21406190 | None:intergenic | 65.0% | |
| ! | AAGGAGGATGGGGTGCCACG+TGG | - | chr7_4:21406217-21406236 | None:intergenic | 65.0% |
| GGAGGTGGAGGGAGTGAGGA+AGG | - | chr7_4:21406434-21406453 | None:intergenic | 65.0% | |
| AGTGGGAGGTGGAGGGAGTG+AGG | - | chr7_4:21406438-21406457 | None:intergenic | 65.0% | |
| CGGTGGTTCCAGCGACAAGG+CGG | + | chr7_4:21406870-21406889 | Msa1144930:CDS | 65.0% | |
| GGTGGTTCCAGCGACAAGGC+GGG | + | chr7_4:21406871-21406890 | Msa1144930:CDS | 65.0% | |
| GTGGTTCCAGCGACAAGGCG+GGG | + | chr7_4:21406872-21406891 | Msa1144930:CDS | 65.0% | |
| !! | AGAAGCTTGCCGTGGTGGGC+AGG | + | chr7_4:21406903-21406922 | Msa1144930:CDS | 65.0% |
| !! | CGGCCAATTGGCCTTCCGGA+GGG | - | chr7_4:21406938-21406957 | None:intergenic | 65.0% |
| !! | TGGGCGGCCAATTGGCCTTC+CGG | - | chr7_4:21406942-21406961 | None:intergenic | 65.0% |
| GCATCCCCAGCCAGTGTCAC+AGG | + | chr7_4:21407872-21407891 | Msa1144930:CDS | 65.0% | |
| ! | AGCGCCTGTGACACTGGCTG+GGG | - | chr7_4:21407879-21407898 | None:intergenic | 65.0% |
| ! | CAGCGCCTGTGACACTGGCT+GGG | - | chr7_4:21407880-21407899 | None:intergenic | 65.0% |
| GATGGCAGCGCCTGTGACAC+TGG | - | chr7_4:21407885-21407904 | None:intergenic | 65.0% | |
| CCATCCCCAACCAGTGCCAC+CGG | + | chr7_4:21407956-21407975 | Msa1144930:CDS | 65.0% | |
| GCATCCCCAGCAAGTGCCAC+AGG | + | chr7_4:21407998-21408017 | Msa1144930:CDS | 65.0% | |
| ! | GAGGATGGGGTGCCACGTGG+TGG | - | chr7_4:21406214-21406233 | None:intergenic | 70.0% |
| ! | AGAGGGCGTGGACGTCCTCC+TGG | + | chr7_4:21406623-21406642 | Msa1144930:CDS | 70.0% |
| ! | GAGGGCGTGGACGTCCTCCT+GGG | + | chr7_4:21406624-21406643 | Msa1144930:CDS | 70.0% |
| !! | GCGGCCAATTGGCCTTCCGG+AGG | - | chr7_4:21406939-21406958 | None:intergenic | 70.0% |
| GCAGCGCCTGTGACACTGGC+TGG | - | chr7_4:21407881-21407900 | None:intergenic | 70.0% | |
| !! | CCGGTGGCACTGGTTGGGGA+TGG | - | chr7_4:21407959-21407978 | None:intergenic | 70.0% |
| !! | AGCGCCGGTGGCACTGGTTG+GGG | - | chr7_4:21407963-21407982 | None:intergenic | 70.0% |
| !! | CAGCGCCGGTGGCACTGGTT+GGG | - | chr7_4:21407964-21407983 | None:intergenic | 70.0% |
| ! | TGCTGAGATGGCAGCGCCGG+TGG | - | chr7_4:21407975-21407994 | None:intergenic | 70.0% |
| GGACGACCCCGCCTTGTCGC+TGG | - | chr7_4:21406881-21406900 | None:intergenic | 75.0% | |
| !! | GCAGCGCCGGTGGCACTGGT+TGG | - | chr7_4:21407965-21407984 | None:intergenic | 75.0% |
| !! | GATGGCAGCGCCGGTGGCAC+TGG | - | chr7_4:21407969-21407988 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 21405887 | 21408353 | 21405887 | ID=Msa1144930;Name=Msa1144930 |
| chr7_4 | mRNA | 21405887 | 21408353 | 21405887 | ID=Msa1144930-mRNA-1;Parent=Msa1144930;Name=Msa1144930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=241|1|1|1|0.5|0.66|3|244|443 |
| chr7_4 | exon | 21405887 | 21406964 | 21405887 | ID=Msa1144930-mRNA-1:exon:5144;Parent=Msa1144930-mRNA-1 |
| chr7_4 | exon | 21407522 | 21407578 | 21407522 | ID=Msa1144930-mRNA-1:exon:5145;Parent=Msa1144930-mRNA-1 |
| chr7_4 | exon | 21407672 | 21408353 | 21407672 | ID=Msa1144930-mRNA-1:exon:5146;Parent=Msa1144930-mRNA-1 |
| chr7_4 | five_prime_UTR | 21405887 | 21406127 | 21405887 | ID=Msa1144930-mRNA-1:five_prime_utr;Parent=Msa1144930-mRNA-1 |
| chr7_4 | CDS | 21406128 | 21406964 | 21406128 | ID=Msa1144930-mRNA-1:cds;Parent=Msa1144930-mRNA-1 |
| chr7_4 | CDS | 21407522 | 21407578 | 21407522 | ID=Msa1144930-mRNA-1:cds;Parent=Msa1144930-mRNA-1 |
| chr7_4 | CDS | 21407672 | 21408109 | 21407672 | ID=Msa1144930-mRNA-1:cds;Parent=Msa1144930-mRNA-1 |
| chr7_4 | three_prime_UTR | 21408110 | 21408353 | 21408110 | ID=Msa1144930-mRNA-1:three_prime_utr;Parent=Msa1144930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
