Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929960 | XP_003631087.1 | 86.414 | 449 | 28 | 8 | 1 | 443 | 1 | 422 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929960 | sp|Q9FYS5|HMGYA_MAIZE | 35.321 | 218 | 100 | 6 | 32 | 249 | 10 | 186 | 2.51e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090030 | Msa0929960 | -0.816959 | 4.225123e-52 | -8.615850e-47 |
| Msa0130520 | Msa0929960 | -0.815395 | 9.449948e-52 | -8.615850e-47 |
| Msa0140510 | Msa0929960 | 0.826677 | 2.378726e-54 | -8.615850e-47 |
| Msa0534900 | Msa0929960 | -0.800382 | 1.479246e-48 | -8.615850e-47 |
| Msa0579370 | Msa0929960 | -0.801553 | 8.530020e-49 | -8.615850e-47 |
| Msa0860900 | Msa0929960 | 0.800005 | 1.765712e-48 | -8.615850e-47 |
| Msa0929960 | Msa1029080 | 0.810075 | 1.380234e-50 | -8.615850e-47 |
| Msa0929960 | Msa1144930 | 0.889989 | 1.477156e-73 | -8.615850e-47 |
| Msa0929960 | Msa1156170 | 0.803613 | 3.206749e-49 | -8.615850e-47 |
| Msa0929960 | Msa1172130 | 0.815738 | 7.927812e-52 | -8.615850e-47 |
| Msa0929960 | Msa1188600 | 0.813778 | 2.154596e-51 | -8.615850e-47 |
| Msa0929960 | Msa1196540 | 0.804789 | 1.824760e-49 | -8.615850e-47 |
| Msa0929960 | Msa1211140 | 0.801945 | 7.084950e-49 | -8.615850e-47 |
| Msa0929960 | Msa1299290 | 0.806525 | 7.886480e-50 | -8.615850e-47 |
| Msa0929960 | Msa1330890 | 0.807029 | 6.172164e-50 | -8.615850e-47 |
| Msa0929960 | Msa1363700 | -0.806333 | 8.654671e-50 | -8.615850e-47 |
| Msa0929960 | Msa1417810 | 0.830533 | 2.784477e-55 | -8.615850e-47 |
| Msa0929960 | Msa1445400 | 0.831774 | 1.379252e-55 | -8.615850e-47 |
| Msa0929960 | Msa1449350 | 0.831888 | 1.293214e-55 | -8.615850e-47 |
| Msa0929960 | Msa1459760 | 0.802486 | 5.484628e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929960 | MtrunA17_Chr8g0392851 | 86.414 | 449 | 28 | 8 | 1 | 443 | 1 | 422 | 0.0 | 625 |
| Msa0929960 | MtrunA17_Chr6g0482691 | 34.932 | 292 | 94 | 10 | 127 | 349 | 215 | 479 | 6.00e-27 | 113 |
| Msa0929960 | MtrunA17_Chr6g0482691 | 71.233 | 73 | 19 | 1 | 34 | 104 | 42 | 114 | 9.34e-24 | 103 |
| Msa0929960 | MtrunA17_Chr5g0434691 | 38.994 | 159 | 67 | 4 | 35 | 183 | 13 | 151 | 4.96e-20 | 88.2 |
| Msa0929960 | MtrunA17_Chr3g0110481 | 35.057 | 174 | 100 | 6 | 35 | 204 | 14 | 178 | 1.23e-13 | 69.3 |
| Msa0929960 | MtrunA17_Chr5g0405221 | 44.156 | 77 | 43 | 0 | 31 | 107 | 32 | 108 | 1.78e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929960 | AT3G18035.1 | 33.659 | 410 | 170 | 17 | 29 | 359 | 60 | 446 | 3.16e-35 | 136 |
| Msa0929960 | AT1G48620.1 | 34.225 | 374 | 154 | 17 | 37 | 332 | 78 | 437 | 7.21e-33 | 130 |
| Msa0929960 | AT3G18035.2 | 35.032 | 314 | 131 | 14 | 29 | 279 | 60 | 363 | 5.14e-25 | 106 |
| Msa0929960 | AT1G14900.1 | 38.889 | 144 | 52 | 4 | 35 | 172 | 24 | 137 | 8.12e-17 | 79.3 |
Find 203 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGACCTCTTTGGGTTAA+AGG | 0.177310 | 6_2:+78778119 | None:intergenic |
| TGGCCTTCCGGAGGGATTTA+TGG | 0.225963 | 6_2:+78777692 | None:intergenic |
| CATCTCTTAATGGTGCTTTA+AGG | 0.229813 | 6_2:+78776837 | None:intergenic |
| ATACTTCTTGGGCCGGCCTC+TGG | 0.231487 | 6_2:+78777779 | None:intergenic |
| TCTGTGCCTGTGGCACTTGC+TGG | 0.231987 | 6_2:+78776615 | None:intergenic |
| CTTTGGGTTAAAGGAGTAAA+AGG | 0.258786 | 6_2:+78778128 | None:intergenic |
| CCCACCACGGCAAGCTTCTT+AGG | 0.260962 | 6_2:+78777720 | None:intergenic |
| GATACATTAGCTTCATCTTC+TGG | 0.274717 | 6_2:+78777819 | None:intergenic |
| GATTTACATGGGCCTCAATT+TGG | 0.290617 | 6_2:-78776506 | Msa0929960:three_prime_UTR |
| GAGCCCATTGGACACAGATT+TGG | 0.290684 | 6_2:+78777944 | None:intergenic |
| CACCGCATCTGCATACTTCT+TGG | 0.297859 | 6_2:+78777767 | None:intergenic |
| TGTTGCAGCGGTTGTGGTTC+CGG | 0.309501 | 6_2:+78776791 | None:intergenic |
| TGAAGTGTTTCATCTCTTAA+TGG | 0.311071 | 6_2:+78776827 | None:intergenic |
| CAGCGCCGGTGGCACTGGTT+GGG | 0.311789 | 6_2:+78776658 | None:intergenic |
| CCTGTTGCTGCAATGGCATC+TGG | 0.319472 | 6_2:+78776573 | None:intergenic |
| TGGTCTCTAAATATTATTAC+AGG | 0.319558 | 6_2:+78776354 | None:intergenic |
| TGGGCGGCCAATTGGCCTTC+CGG | 0.321471 | 6_2:+78777680 | None:intergenic |
| TACTTCTTGGGCCGGCCTCT+GGG | 0.324206 | 6_2:+78777780 | None:intergenic |
| AGCCCATTGGACACAGATTT+GGG | 0.328566 | 6_2:+78777945 | None:intergenic |
| GCAGCGCCTGTGACACTGGC+TGG | 0.331592 | 6_2:+78776741 | None:intergenic |
| AGTGCGTGTCTATCTGTCTA+TGG | 0.332408 | 6_2:+78778617 | None:intergenic |
| GGAACGGTGGTGGGCAGAGG+TGG | 0.336021 | 6_2:+78778461 | None:intergenic |
| ATGAGGTTGGGCTTGGACTT+AGG | 0.336448 | 6_2:+78778089 | None:intergenic |
| TGCTGCACCTGTTGCTGCAA+TGG | 0.336500 | 6_2:+78776566 | None:intergenic |
| ATTTGGTATGAGGTTGGGCT+TGG | 0.339854 | 6_2:+78778082 | None:intergenic |
| GGCCTTCCGGAGGGATTTAT+GGG | 0.345829 | 6_2:+78777693 | None:intergenic |
| ACGAAAACGGGCTGGGCATT+TGG | 0.348576 | 6_2:+78778065 | None:intergenic |
| AAGGGAACGGTGGTGGGCAG+AGG | 0.353083 | 6_2:+78778458 | None:intergenic |
| CATGTAAATCTTCCTAGCTT+GGG | 0.356230 | 6_2:+78776519 | None:intergenic |
| TTGCCAGCATTTCTAACTCT+TGG | 0.356861 | 6_2:+78776867 | None:intergenic |
| ACGGTGGTGGGCAGAGGTGG+AGG | 0.360088 | 6_2:+78778464 | None:intergenic |
| CTATTGAGAGTGGGAGGTGG+AGG | 0.361661 | 6_2:+78778176 | None:intergenic |
| ATCACCTTTGGGCGGCCAAT+TGG | 0.362515 | 6_2:+78777672 | None:intergenic |
| TGGGCATTTGGTATGAGGTT+GGG | 0.370163 | 6_2:+78778077 | None:intergenic |
| CAGTGCATGTGGCACTTGTT+GGG | 0.380662 | 6_2:+78776700 | None:intergenic |
| GTTAGAAATGCTGGCAACTT+TGG | 0.382837 | 6_2:-78776861 | Msa0929960:CDS |
| GCAGTGCATGTGGCACTTGT+TGG | 0.389709 | 6_2:+78776699 | None:intergenic |
| CGGGCTGGGCATTTGGTATG+AGG | 0.389830 | 6_2:+78778072 | None:intergenic |
| CTGGGCATTTGGTATGAGGT+TGG | 0.395226 | 6_2:+78778076 | None:intergenic |
| AGCGCCGGTGGCACTGGTTG+GGG | 0.396155 | 6_2:+78776659 | None:intergenic |
| AGGACGACCACGACCTCTTT+GGG | 0.396456 | 6_2:+78778112 | None:intergenic |
| GAGGACGACCACGACCTCTT+TGG | 0.397582 | 6_2:+78778111 | None:intergenic |
| GTGGTGGGCAGAGGTGGAGG+AGG | 0.397852 | 6_2:+78778467 | None:intergenic |
| ACTTCAGCCACAGCAATTTC+CGG | 0.398242 | 6_2:-78776810 | Msa0929960:CDS |
| GCAGCGCCGGTGGCACTGGT+TGG | 0.403759 | 6_2:+78776657 | None:intergenic |
| CTGTGCCTGTGGCACTTGCT+GGG | 0.404679 | 6_2:+78776616 | None:intergenic |
| GGAGGTGGAGGGAGTGAGGA+AGG | 0.407024 | 6_2:+78778188 | None:intergenic |
| GTAGTAGGAGGTAGGAAGTA+GGG | 0.408135 | 6_2:-78776449 | Msa0929960:three_prime_UTR |
| AGTGGGAGGTGGAGGGAGTG+AGG | 0.410669 | 6_2:+78778184 | None:intergenic |
| CCAGATGCCATTGCAGCAAC+AGG | 0.415754 | 6_2:-78776573 | Msa0929960:CDS |
| GGATCAAGCAAAAGGGCAAT+AGG | 0.418614 | 6_2:-78778335 | Msa0929960:CDS |
| TTTGCAGCAATCAAAGGTTA+AGG | 0.422418 | 6_2:-78776954 | Msa0929960:intron |
| AGAGGGCGTGGACGTCCTCC+TGG | 0.422567 | 6_2:-78777996 | Msa0929960:CDS |
| GAGGGTGAAGGGAACGGTGG+TGG | 0.427773 | 6_2:+78778451 | None:intergenic |
| AGATATGTAAAGCTAGTAGT+AGG | 0.428589 | 6_2:-78776464 | Msa0929960:three_prime_UTR |
| GCAAAAGGTATGACAGTTGT+TGG | 0.432627 | 6_2:+78777876 | None:intergenic |
| CAGCGCCTGTGACACTGGCT+GGG | 0.434222 | 6_2:+78776742 | None:intergenic |
| ACAGACACCACAGCAGTTGT+AGG | 0.434532 | 6_2:+78778023 | None:intergenic |
| CCATGTAAATCTTCCTAGCT+TGG | 0.443512 | 6_2:+78776518 | None:intergenic |
| ATTGCTGCAACTGCAGTGGC+TGG | 0.445073 | 6_2:+78776890 | None:intergenic |
| TCTATAAAATAGGGAGCAAA+AGG | 0.446309 | 6_2:-78777109 | Msa0929960:intron |
| GAACACAGTCATTAGATTCT+CGG | 0.447618 | 6_2:+78776415 | None:intergenic |
| CACGTGGTGGTGAGTGAAGT+TGG | 0.448823 | 6_2:+78778421 | None:intergenic |
| GATGGCAGCGCCTGTGACAC+TGG | 0.449654 | 6_2:+78776737 | None:intergenic |
| AGAAGCTTGCCGTGGTGGGC+AGG | 0.453200 | 6_2:-78777716 | Msa0929960:CDS |
| AGCTCTTGTTGCAGCGGTTG+TGG | 0.462434 | 6_2:+78776785 | None:intergenic |
| TGCTGAGATGGCAGCGCCGG+TGG | 0.462473 | 6_2:+78776647 | None:intergenic |
| AGAAAGATGGATCAAGCAAA+AGG | 0.462833 | 6_2:-78778343 | Msa0929960:CDS |
| GTTGGGTTGTTCGAGGGTGA+AGG | 0.465533 | 6_2:+78778439 | None:intergenic |
| TGGGGATGCAGTTGCTGAGA+TGG | 0.466658 | 6_2:+78776761 | None:intergenic |
| CCGGTGGCACTGGTTGGGGA+TGG | 0.467209 | 6_2:+78776663 | None:intergenic |
| AATCCCTCCGGAAGGCCAAT+TGG | 0.470273 | 6_2:-78777687 | Msa0929960:CDS |
| ACCGCATCTGCATACTTCTT+GGG | 0.471053 | 6_2:+78777768 | None:intergenic |
| GGACGACCCCGCCTTGTCGC+TGG | 0.472354 | 6_2:+78777741 | None:intergenic |
| ATCTGTCTATGGGGAAGGGA+AGG | 0.474510 | 6_2:+78778628 | None:intergenic |
| AGTAGTAGGAGGTAGGAAGT+AGG | 0.474865 | 6_2:-78776450 | Msa0929960:three_prime_UTR |
| TAAAGCTAGTAGTAGGAGGT+AGG | 0.475611 | 6_2:-78776457 | Msa0929960:three_prime_UTR |
| GATGGCAGCGCCGGTGGCAC+TGG | 0.477721 | 6_2:+78776653 | None:intergenic |
| TTGTTGGGTGCGACTGCGAT+TGG | 0.477868 | 6_2:+78777892 | None:intergenic |
| ACAACAGAAGGAAAGGGAAC+AGG | 0.483163 | 6_2:+78777843 | None:intergenic |
| AGCGCCTGTGACACTGGCTG+GGG | 0.483378 | 6_2:+78776743 | None:intergenic |
| ACAGCAGTTGTAGGAGGAGG+AGG | 0.488445 | 6_2:+78778032 | None:intergenic |
| GGCCCAAATCTGTGTCCAAT+GGG | 0.489592 | 6_2:-78777947 | Msa0929960:CDS |
| CTCAACCACTTGAAATCTGC+TGG | 0.490237 | 6_2:-78778245 | Msa0929960:CDS |
| TGGGGATGGAGTTGCTGAGA+TGG | 0.490708 | 6_2:+78776677 | None:intergenic |
| CATCTCAGCGTAAGGAGGAT+GGG | 0.490876 | 6_2:+78778394 | None:intergenic |
| AATCCAAGAGTTAGAAATGC+TGG | 0.492647 | 6_2:-78776870 | Msa0929960:CDS |
| AGGGTGAAGGGAACGGTGGT+GGG | 0.493500 | 6_2:+78778452 | None:intergenic |
| GCGGCCAATTGGCCTTCCGG+AGG | 0.493639 | 6_2:+78777683 | None:intergenic |
| GCATCCCCAGCCAGTGTCAC+AGG | 0.494914 | 6_2:-78776747 | Msa0929960:CDS |
| GTGCGTGTCTATCTGTCTAT+GGG | 0.496529 | 6_2:+78778618 | None:intergenic |
| GGTGGTTCCAGCGACAAGGC+GGG | 0.496767 | 6_2:-78777748 | Msa0929960:CDS |
| TTTACTCCTTTAACCCAAAG+AGG | 0.497685 | 6_2:-78778125 | Msa0929960:CDS |
| TCCTAAGAAGCTTGCCGTGG+TGG | 0.501049 | 6_2:-78777721 | Msa0929960:CDS |
| GAGTGAAGTTGGGTTGTTCG+AGG | 0.501548 | 6_2:+78778432 | None:intergenic |
| AGGACGTCGTTTGAGCCCAT+TGG | 0.502539 | 6_2:+78777932 | None:intergenic |
| CGGCCAATTGGCCTTCCGGA+GGG | 0.504424 | 6_2:+78777684 | None:intergenic |
| TAGCTTGGGGCTAAAGTATG+TGG | 0.505368 | 6_2:+78776533 | None:intergenic |
| TGTTGGGTGCGACTGCGATT+GGG | 0.505909 | 6_2:+78777893 | None:intergenic |
| TGGGGATGCAGTTGCTGAGA+TGG | 0.508395 | 6_2:+78776635 | None:intergenic |
| AACAAGGTGCTGTGTTCAGC+TGG | 0.509337 | 6_2:+78778278 | None:intergenic |
| CGAGAGAAACGAAAACGGGC+TGG | 0.514942 | 6_2:+78778057 | None:intergenic |
| CCATCCCCAACCAGTGCCAC+CGG | 0.514985 | 6_2:-78776663 | Msa0929960:CDS |
| TCATCTTCTGGAACAACAGA+AGG | 0.518256 | 6_2:+78777831 | None:intergenic |
| CCAAGCTAGGAAGATTTACA+TGG | 0.520139 | 6_2:-78776518 | Msa0929960:exon |
| GTGGGTTCTTCGCCAAATTG+AGG | 0.521758 | 6_2:+78776494 | None:intergenic |
| TTCTGGAACAACAGAAGGAA+AGG | 0.523237 | 6_2:+78777836 | None:intergenic |
| ACAGGAGCAGCAGCAGCAAA+AGG | 0.523324 | 6_2:+78777861 | None:intergenic |
| TTGTTCGAGGGTGAAGGGAA+CGG | 0.529100 | 6_2:+78778445 | None:intergenic |
| TCATCTCAGCGTAAGGAGGA+TGG | 0.530449 | 6_2:+78778393 | None:intergenic |
| TAGTAGGAGGTAGGAAGTAG+GGG | 0.530530 | 6_2:-78776448 | Msa0929960:three_prime_UTR |
| AATGGGCTCAAACGACGTCC+TGG | 0.531113 | 6_2:-78777930 | Msa0929960:CDS |
| GCATCCCCAGCAAGTGCCAC+AGG | 0.532601 | 6_2:-78776621 | Msa0929960:CDS |
| TGTCTATCTGTCTATGGGGA+AGG | 0.536821 | 6_2:+78778623 | None:intergenic |
| CCTAAGAAGCTTGCCGTGGT+GGG | 0.538381 | 6_2:-78777720 | Msa0929960:CDS |
| AGGGTCGAGAGAAACGAAAA+CGG | 0.539218 | 6_2:+78778052 | None:intergenic |
| TGGGGATGGAGTTGCTGAGA+TGG | 0.540504 | 6_2:+78776719 | None:intergenic |
| TCTGTCTATGGGGAAGGGAA+GGG | 0.540702 | 6_2:+78778629 | None:intergenic |
| CATGTGGCACTTGTTGGGGA+TGG | 0.542068 | 6_2:+78776705 | None:intergenic |
| TCAGATCTAACTCGATAAAG+AGG | 0.543241 | 6_2:-78777968 | Msa0929960:CDS |
| ACGTGGTGGTGAGTGAAGTT+GGG | 0.543540 | 6_2:+78778422 | None:intergenic |
| GAGAGAAACGAAAACGGGCT+GGG | 0.545382 | 6_2:+78778058 | None:intergenic |
| GGCAGGCCCATAAATCCCTC+CGG | 0.545558 | 6_2:-78777699 | Msa0929960:CDS |
| CAAAAGGTATGACAGTTGTT+GGG | 0.549504 | 6_2:+78777877 | None:intergenic |
| GAAGCACTGAAAGAGAAAGA+TGG | 0.550195 | 6_2:-78778356 | Msa0929960:CDS |
| AGGCCCAAATCTGTGTCCAA+TGG | 0.550214 | 6_2:-78777948 | Msa0929960:CDS |
| ATCAAAGGAAGTTGAGTCCA+TGG | 0.551511 | 6_2:+78778493 | None:intergenic |
| TATTGAGAGTGGGAGGTGGA+GGG | 0.551861 | 6_2:+78778177 | None:intergenic |
| GCGTCTGAAGCAAGTTGAGT+GGG | 0.552610 | 6_2:+78778686 | None:intergenic |
| AGGTGGAGGAGGGAGATCAA+AGG | 0.554483 | 6_2:+78778478 | None:intergenic |
| GGGTCGAGAGAAACGAAAAC+GGG | 0.555283 | 6_2:+78778053 | None:intergenic |
| GAAAGATGGATCAAGCAAAA+GGG | 0.555450 | 6_2:-78778342 | Msa0929960:CDS |
| GCTCACTTTGCAGCAATCAA+AGG | 0.556497 | 6_2:-78776960 | Msa0929960:intron |
| GAGGGCGTGGACGTCCTCCT+GGG | 0.559128 | 6_2:-78777995 | Msa0929960:CDS |
| TTGGGTTGTTCGAGGGTGAA+GGG | 0.559588 | 6_2:+78778440 | None:intergenic |
| ACCACAGCAGTTGTAGGAGG+AGG | 0.560199 | 6_2:+78778029 | None:intergenic |
| AGTGAAGTTGGGTTGTTCGA+GGG | 0.560599 | 6_2:+78778433 | None:intergenic |
| TGTGCCTGTGGCACTTGCTG+GGG | 0.560848 | 6_2:+78776617 | None:intergenic |
| ATCTCAGCGTAAGGAGGATG+GGG | 0.561129 | 6_2:+78778395 | None:intergenic |
| AGTTGCTGAGATGGCAGCGC+CGG | 0.561561 | 6_2:+78776644 | None:intergenic |
| TTGTATATCATCTCAGCGTA+AGG | 0.563264 | 6_2:+78778386 | None:intergenic |
| TTGGATTGCTGCAACTGCAG+TGG | 0.565398 | 6_2:+78776886 | None:intergenic |
| TTGTCAATGAAGATCTAAGA+AGG | 0.565742 | 6_2:-78777078 | Msa0929960:CDS |
| GTCTATCTGTCTATGGGGAA+GGG | 0.570093 | 6_2:+78778624 | None:intergenic |
| AAGGCCAATTGGCCGCCCAA+AGG | 0.570612 | 6_2:-78777676 | Msa0929960:intron |
| GGTCACAAGTGTAAGTGTAA+TGG | 0.572100 | 6_2:-78778653 | Msa0929960:five_prime_UTR |
| AGTGCATGTGGCACTTGTTG+GGG | 0.572287 | 6_2:+78776701 | None:intergenic |
| GTGGTCAGATCTATTGAGAG+TGG | 0.574173 | 6_2:+78778166 | None:intergenic |
| TGCTGAGATGGCAGTGCATG+TGG | 0.574705 | 6_2:+78776689 | None:intergenic |
| TATGTAAAGCTAGTAGTAGG+AGG | 0.575240 | 6_2:-78776461 | Msa0929960:three_prime_UTR |
| ATGTATCTGTTAGATCTACT+AGG | 0.575325 | 6_2:-78777803 | Msa0929960:CDS |
| GACACCACAGCAGTTGTAGG+AGG | 0.579333 | 6_2:+78778026 | None:intergenic |
| GTAGCATAAAACAAATTCAA+AGG | 0.579569 | 6_2:+78776393 | None:intergenic |
| GTAGACCAGCAGATTTCAAG+TGG | 0.580659 | 6_2:+78778240 | None:intergenic |
| TCTGGAACAACAGAAGGAAA+GGG | 0.582719 | 6_2:+78777837 | None:intergenic |
| GATCTATTGAGAGTGGGAGG+TGG | 0.583566 | 6_2:+78778173 | None:intergenic |
| TGGTGGGCAGAGGTGGAGGA+GGG | 0.584273 | 6_2:+78778468 | None:intergenic |
| GAGGATGGGGTGCCACGTGG+TGG | 0.584493 | 6_2:+78778408 | None:intergenic |
| TCCTCCTCCTACAACTGCTG+TGG | 0.585779 | 6_2:-78778030 | Msa0929960:CDS |
| GTGTCTGTTAAAAGAGGGCG+TGG | 0.587867 | 6_2:-78778008 | Msa0929960:CDS |
| ACATACTTTAGCCCCAAGCT+AGG | 0.588129 | 6_2:-78776531 | Msa0929960:exon |
| CCTTTAACCCAAAGAGGTCG+TGG | 0.592542 | 6_2:-78778119 | Msa0929960:CDS |
| GAGTTAGATCTGAAAGTCCC+AGG | 0.592545 | 6_2:+78777978 | None:intergenic |
| CATCTGCATACTTCTTGGGC+CGG | 0.595405 | 6_2:+78777772 | None:intergenic |
| GATCTACTAGGCCCAGAGGC+CGG | 0.595741 | 6_2:-78777791 | Msa0929960:CDS |
| GGCCCATAAATCCCTCCGGA+AGG | 0.596807 | 6_2:-78777695 | Msa0929960:CDS |
| TGTTCATAATTCTGTGCCTG+TGG | 0.597800 | 6_2:+78776605 | None:intergenic |
| ATGTAAATCTTCCTAGCTTG+GGG | 0.601628 | 6_2:+78776520 | None:intergenic |
| TGGTCAGATCTATTGAGAGT+GGG | 0.603697 | 6_2:+78778167 | None:intergenic |
| GCCCAAGAAGTATGCAGATG+CGG | 0.606047 | 6_2:-78777769 | Msa0929960:CDS |
| CGGTGGTTCCAGCGACAAGG+CGG | 0.609470 | 6_2:-78777749 | Msa0929960:CDS |
| GCTGTGGTGTCTGTTAAAAG+AGG | 0.609515 | 6_2:-78778014 | Msa0929960:CDS |
| ATTTATGGGCCTGCCCACCA+CGG | 0.610897 | 6_2:+78777707 | None:intergenic |
| AGGTTGGGCTTGGACTTAGG+AGG | 0.610969 | 6_2:+78778092 | None:intergenic |
| GGACTTTGATGATCAAAGAG+AGG | 0.613003 | 6_2:+78776911 | None:intergenic |
| GGTCTCTAAATATTATTACA+GGG | 0.613347 | 6_2:+78776355 | None:intergenic |
| ATGCGGTGGTTCCAGCGACA+AGG | 0.614719 | 6_2:-78777752 | Msa0929960:CDS |
| AAGGAGGATGGGGTGCCACG+TGG | 0.617913 | 6_2:+78778405 | None:intergenic |
| GTGGTTCCAGCGACAAGGCG+GGG | 0.619166 | 6_2:-78777747 | Msa0929960:CDS |
| TATATCATCTCAGCGTAAGG+AGG | 0.625776 | 6_2:+78778389 | None:intergenic |
| TGCGTCTGAAGCAAGTTGAG+TGG | 0.627933 | 6_2:+78778685 | None:intergenic |
| GATGGCAGCTCTTGTTGCAG+CGG | 0.632179 | 6_2:+78776779 | None:intergenic |
| CAACAGAATCAGCAGTACAC+TGG | 0.632434 | 6_2:+78776334 | None:intergenic |
| AGTCCATGGTGAGTGAGCGA+CGG | 0.645514 | 6_2:+78778507 | None:intergenic |
| GTCTCTAAATATTATTACAG+GGG | 0.649469 | 6_2:+78776356 | None:intergenic |
| TCGTCCTAAGAAGCTTGCCG+TGG | 0.649764 | 6_2:-78777724 | Msa0929960:CDS |
| GATTAGATTAGAGTAACTAA+CGG | 0.650025 | 6_2:+78778570 | None:intergenic |
| CAGCAGTTGTAGGAGGAGGA+GGG | 0.658381 | 6_2:+78778033 | None:intergenic |
| ACATTAGGATCACCTTTGGG+CGG | 0.663242 | 6_2:+78777664 | None:intergenic |
| CAAGAAGTATGCAGATGCGG+TGG | 0.663985 | 6_2:-78777766 | Msa0929960:CDS |
| TGTGGTTCCGGAAATTGCTG+TGG | 0.664513 | 6_2:+78776803 | None:intergenic |
| TTCGAGGGTGAAGGGAACGG+TGG | 0.666611 | 6_2:+78778448 | None:intergenic |
| TCAGATCTATTGAGAGTGGG+AGG | 0.671854 | 6_2:+78778170 | None:intergenic |
| TGCGTGTCTATCTGTCTATG+GGG | 0.672689 | 6_2:+78778619 | None:intergenic |
| GTTGAGATGTTGTGTTAACA+AGG | 0.674763 | 6_2:+78778262 | None:intergenic |
| CTGTGGTGTCTGTTAAAAGA+GGG | 0.676730 | 6_2:-78778013 | Msa0929960:CDS |
| GCTTCAGACGCACACAACAC+AGG | 0.688086 | 6_2:-78778674 | Msa0929960:five_prime_UTR |
| CAAGCTAGGAAGATTTACAT+GGG | 0.692958 | 6_2:-78776517 | Msa0929960:exon |
| AAGGAAGATGAGCTTCAGAG+TGG | 0.708339 | 6_2:+78778147 | None:intergenic |
| CGTCTGAAGCAAGTTGAGTG+GGG | 0.717849 | 6_2:+78778687 | None:intergenic |
| CAACTTCACTCACCACCACG+TGG | 0.718293 | 6_2:-78778420 | Msa0929960:CDS |
| GTTAGATCTACTAGGCCCAG+AGG | 0.757336 | 6_2:-78777795 | Msa0929960:CDS |
| TTAGATCTGAAAGTCCCAGG+AGG | 0.781122 | 6_2:+78777981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATCAAATCATTTA+GGG | + | chr6_2:78777488-78777507 | None:intergenic | 10.0% |
| !! | AATAATTAATCAAATCATTT+AGG | + | chr6_2:78777489-78777508 | None:intergenic | 10.0% |
| !! | AAATAATAAGATCAATTTGT+TGG | - | chr6_2:78777742-78777761 | Msa0929960:CDS | 15.0% |
| !!! | TTTTATAGAAATTGAAAGAA+TGG | + | chr6_2:78777900-78777919 | None:intergenic | 15.0% |
| !! | TCTTTCAATTTCTATAAAAT+AGG | - | chr6_2:78777901-78777920 | Msa0929960:CDS | 15.0% |
| !! | CTTTCAATTTCTATAAAATA+GGG | - | chr6_2:78777902-78777921 | Msa0929960:CDS | 15.0% |
| !! | AACAATAAAAACTCAACATT+AGG | + | chr6_2:78777374-78777393 | None:intergenic | 20.0% |
| !!! | AGAGATATTTTAACATACTT+TGG | - | chr6_2:78777833-78777852 | Msa0929960:CDS | 20.0% |
| !!! | TTTACATATCTTTTACAAGT+GGG | + | chr6_2:78778547-78778566 | None:intergenic | 20.0% |
| !!! | ATTTAGAACAATGCTTTTAT+TGG | - | chr6_2:78778729-78778748 | Msa0929960:five_prime_UTR | 20.0% |
| ! | GATTAGATTAGAGTAACTAA+CGG | + | chr6_2:78776453-78776472 | None:intergenic | 25.0% |
| ! | AAACACACATAAATAGATGA+AGG | + | chr6_2:78777398-78777417 | None:intergenic | 25.0% |
| !!! | TAATTTGACTTGCCTTATTT+TGG | - | chr6_2:78777425-78777444 | Msa0929960:intron | 25.0% |
| !!! | ATTGACTTTTGCAACTATAT+TGG | - | chr6_2:78777537-78777556 | Msa0929960:intron | 25.0% |
| !! | CTTTACATATCTTTTACAAG+TGG | + | chr6_2:78778548-78778567 | None:intergenic | 25.0% |
| ! | GTAGCATAAAACAAATTCAA+AGG | + | chr6_2:78778630-78778649 | None:intergenic | 25.0% |
| ! | GTCTCTAAATATTATTACAG+GGG | + | chr6_2:78778667-78778686 | None:intergenic | 25.0% |
| ! | GGTCTCTAAATATTATTACA+GGG | + | chr6_2:78778668-78778687 | None:intergenic | 25.0% |
| ! | TGGTCTCTAAATATTATTAC+AGG | + | chr6_2:78778669-78778688 | None:intergenic | 25.0% |
| !! | GAGAATTTTTGGGAATTACT+AGG | + | chr6_2:78776486-78776505 | None:intergenic | 30.0% |
| ATGTATCTGTTAGATCTACT+AGG | - | chr6_2:78777217-78777236 | Msa0929960:intron | 30.0% | |
| TCTCATACTAGACCAAAATA+AGG | + | chr6_2:78777440-78777459 | None:intergenic | 30.0% | |
| ! | TTTTGGTCTAGTATGAGATT+AGG | - | chr6_2:78777442-78777461 | Msa0929960:intron | 30.0% |
| TTTGGTCTAGTATGAGATTA+GGG | - | chr6_2:78777443-78777462 | Msa0929960:intron | 30.0% | |
| TATAGTTGCAAAAGTCAATG+TGG | + | chr6_2:78777536-78777555 | None:intergenic | 30.0% | |
| CACATTTATCTTGAAAACGA+AGG | - | chr6_2:78777563-78777582 | Msa0929960:intron | 30.0% | |
| AGTAATTAAGCAAGTAGAGA+AGG | - | chr6_2:78777672-78777691 | Msa0929960:intron | 30.0% | |
| !! | TAAGATCAATTTGTTGGCTT+TGG | - | chr6_2:78777748-78777767 | Msa0929960:CDS | 30.0% |
| !! | TTGGCTTTGGAACATATATT+TGG | - | chr6_2:78777761-78777780 | Msa0929960:CDS | 30.0% |
| TCTATAAAATAGGGAGCAAA+AGG | - | chr6_2:78777911-78777930 | Msa0929960:CDS | 30.0% | |
| TTGTCAATGAAGATCTAAGA+AGG | - | chr6_2:78777942-78777961 | Msa0929960:CDS | 30.0% | |
| ! | TGAAGTGTTTCATCTCTTAA+TGG | + | chr6_2:78778196-78778215 | None:intergenic | 30.0% |
| AGATATGTAAAGCTAGTAGT+AGG | - | chr6_2:78778556-78778575 | Msa0929960:five_prime_UTR | 30.0% | |
| ! | CGGTAGATTCGAGAATTTTT+GGG | + | chr6_2:78776496-78776515 | None:intergenic | 35.0% |
| ! | ACGGTAGATTCGAGAATTTT+TGG | + | chr6_2:78776497-78776516 | None:intergenic | 35.0% |
| TTGTATATCATCTCAGCGTA+AGG | + | chr6_2:78776637-78776656 | None:intergenic | 35.0% | |
| AGAAAGATGGATCAAGCAAA+AGG | - | chr6_2:78776677-78776696 | Msa0929960:CDS | 35.0% | |
| GAAAGATGGATCAAGCAAAA+GGG | - | chr6_2:78776678-78776697 | Msa0929960:CDS | 35.0% | |
| GTTGAGATGTTGTGTTAACA+AGG | + | chr6_2:78776761-78776780 | None:intergenic | 35.0% | |
| ! | CTTTGGGTTAAAGGAGTAAA+AGG | + | chr6_2:78776895-78776914 | None:intergenic | 35.0% |
| TTTACTCCTTTAACCCAAAG+AGG | - | chr6_2:78776895-78776914 | Msa0929960:CDS | 35.0% | |
| TCAGATCTAACTCGATAAAG+AGG | - | chr6_2:78777052-78777071 | Msa0929960:intron | 35.0% | |
| ! | CAAAAGGTATGACAGTTGTT+GGG | + | chr6_2:78777146-78777165 | None:intergenic | 35.0% |
| ! | GATACATTAGCTTCATCTTC+TGG | + | chr6_2:78777204-78777223 | None:intergenic | 35.0% |
| TCAACATTAGGATCACCTTT+GGG | + | chr6_2:78777362-78777381 | None:intergenic | 35.0% | |
| TTGGTCTAGTATGAGATTAG+GGG | - | chr6_2:78777444-78777463 | Msa0929960:intron | 35.0% | |
| GTGATAAACAACAAAGCAGA+TGG | - | chr6_2:78777599-78777618 | Msa0929960:intron | 35.0% | |
| TTTGCAGCAATCAAAGGTTA+AGG | - | chr6_2:78778066-78778085 | Msa0929960:CDS | 35.0% | |
| AATCCAAGAGTTAGAAATGC+TGG | - | chr6_2:78778150-78778169 | Msa0929960:CDS | 35.0% | |
| CATCTCTTAATGGTGCTTTA+AGG | + | chr6_2:78778186-78778205 | None:intergenic | 35.0% | |
| ATGTAAATCTTCCTAGCTTG+GGG | + | chr6_2:78778503-78778522 | None:intergenic | 35.0% | |
| CATGTAAATCTTCCTAGCTT+GGG | + | chr6_2:78778504-78778523 | None:intergenic | 35.0% | |
| CAAGCTAGGAAGATTTACAT+GGG | - | chr6_2:78778503-78778522 | Msa0929960:exon | 35.0% | |
| TATGTAAAGCTAGTAGTAGG+AGG | - | chr6_2:78778559-78778578 | Msa0929960:five_prime_UTR | 35.0% | |
| GAACACAGTCATTAGATTCT+CGG | + | chr6_2:78778608-78778627 | None:intergenic | 35.0% | |
| GGTCACAAGTGTAAGTGTAA+TGG | - | chr6_2:78776367-78776386 | Msa0929960:three_prime_UTR | 40.0% | |
| ATCAAAGGAAGTTGAGTCCA+TGG | + | chr6_2:78776530-78776549 | None:intergenic | 40.0% | |
| TATATCATCTCAGCGTAAGG+AGG | + | chr6_2:78776634-78776653 | None:intergenic | 40.0% | |
| !! | GAAGCACTGAAAGAGAAAGA+TGG | - | chr6_2:78776664-78776683 | Msa0929960:CDS | 40.0% |
| TGGTCAGATCTATTGAGAGT+GGG | + | chr6_2:78776856-78776875 | None:intergenic | 40.0% | |
| CTGTGGTGTCTGTTAAAAGA+GGG | - | chr6_2:78777007-78777026 | Msa0929960:intron | 40.0% | |
| ! | GCAAAAGGTATGACAGTTGT+TGG | + | chr6_2:78777147-78777166 | None:intergenic | 40.0% |
| ! | TCTGGAACAACAGAAGGAAA+GGG | + | chr6_2:78777186-78777205 | None:intergenic | 40.0% |
| !! | TTCTGGAACAACAGAAGGAA+AGG | + | chr6_2:78777187-78777206 | None:intergenic | 40.0% |
| !! | TCATCTTCTGGAACAACAGA+AGG | + | chr6_2:78777192-78777211 | None:intergenic | 40.0% |
| CTCAACATTAGGATCACCTT+TGG | + | chr6_2:78777363-78777382 | None:intergenic | 40.0% | |
| GTAAACATTCTCGTGCTATG+TGG | - | chr6_2:78777790-78777809 | Msa0929960:CDS | 40.0% | |
| GCAAAGTGAGCAAACAATAG+AGG | + | chr6_2:78778051-78778070 | None:intergenic | 40.0% | |
| ! | GGACTTTGATGATCAAAGAG+AGG | + | chr6_2:78778112-78778131 | None:intergenic | 40.0% |
| TTGCCAGCATTTCTAACTCT+TGG | + | chr6_2:78778156-78778175 | None:intergenic | 40.0% | |
| GTTAGAAATGCTGGCAACTT+TGG | - | chr6_2:78778159-78778178 | Msa0929960:CDS | 40.0% | |
| TGTTCATAATTCTGTGCCTG+TGG | + | chr6_2:78778418-78778437 | None:intergenic | 40.0% | |
| CCATGTAAATCTTCCTAGCT+TGG | + | chr6_2:78778505-78778524 | None:intergenic | 40.0% | |
| CCAAGCTAGGAAGATTTACA+TGG | - | chr6_2:78778502-78778521 | Msa0929960:exon | 40.0% | |
| GATTTACATGGGCCTCAATT+TGG | - | chr6_2:78778514-78778533 | Msa0929960:five_prime_UTR | 40.0% | |
| TAAAGCTAGTAGTAGGAGGT+AGG | - | chr6_2:78778563-78778582 | Msa0929960:five_prime_UTR | 40.0% | |
| GTCTATCTGTCTATGGGGAA+GGG | + | chr6_2:78776399-78776418 | None:intergenic | 45.0% | |
| TGTCTATCTGTCTATGGGGA+AGG | + | chr6_2:78776400-78776419 | None:intergenic | 45.0% | |
| TGCGTGTCTATCTGTCTATG+GGG | + | chr6_2:78776404-78776423 | None:intergenic | 45.0% | |
| GTGCGTGTCTATCTGTCTAT+GGG | + | chr6_2:78776405-78776424 | None:intergenic | 45.0% | |
| AGTGCGTGTCTATCTGTCTA+TGG | + | chr6_2:78776406-78776425 | None:intergenic | 45.0% | |
| ! | AGTGAAGTTGGGTTGTTCGA+GGG | + | chr6_2:78776590-78776609 | None:intergenic | 45.0% |
| GGATCAAGCAAAAGGGCAAT+AGG | - | chr6_2:78776685-78776704 | Msa0929960:CDS | 45.0% | |
| CTCAACCACTTGAAATCTGC+TGG | - | chr6_2:78776775-78776794 | Msa0929960:CDS | 45.0% | |
| GTAGACCAGCAGATTTCAAG+TGG | + | chr6_2:78776783-78776802 | None:intergenic | 45.0% | |
| TCAGATCTATTGAGAGTGGG+AGG | + | chr6_2:78776853-78776872 | None:intergenic | 45.0% | |
| GTGGTCAGATCTATTGAGAG+TGG | + | chr6_2:78776857-78776876 | None:intergenic | 45.0% | |
| AAGGAAGATGAGCTTCAGAG+TGG | + | chr6_2:78776876-78776895 | None:intergenic | 45.0% | |
| ATTTGGTATGAGGTTGGGCT+TGG | + | chr6_2:78776941-78776960 | None:intergenic | 45.0% | |
| TGGGCATTTGGTATGAGGTT+GGG | + | chr6_2:78776946-78776965 | None:intergenic | 45.0% | |
| AGGGTCGAGAGAAACGAAAA+CGG | + | chr6_2:78776971-78776990 | None:intergenic | 45.0% | |
| GCTGTGGTGTCTGTTAAAAG+AGG | - | chr6_2:78777006-78777025 | Msa0929960:intron | 45.0% | |
| TTAGATCTGAAAGTCCCAGG+AGG | + | chr6_2:78777042-78777061 | None:intergenic | 45.0% | |
| GAGTTAGATCTGAAAGTCCC+AGG | + | chr6_2:78777045-78777064 | None:intergenic | 45.0% | |
| AGCCCATTGGACACAGATTT+GGG | + | chr6_2:78777078-78777097 | None:intergenic | 45.0% | |
| ACAACAGAAGGAAAGGGAAC+AGG | + | chr6_2:78777180-78777199 | None:intergenic | 45.0% | |
| ACCGCATCTGCATACTTCTT+GGG | + | chr6_2:78777255-78777274 | None:intergenic | 45.0% | |
| ACATTAGGATCACCTTTGGG+CGG | + | chr6_2:78777359-78777378 | None:intergenic | 45.0% | |
| GCTCACTTTGCAGCAATCAA+AGG | - | chr6_2:78778060-78778079 | Msa0929960:CDS | 45.0% | |
| ACTTCAGCCACAGCAATTTC+CGG | - | chr6_2:78778210-78778229 | Msa0929960:CDS | 45.0% | |
| TAGCTTGGGGCTAAAGTATG+TGG | + | chr6_2:78778490-78778509 | None:intergenic | 45.0% | |
| ACATACTTTAGCCCCAAGCT+AGG | - | chr6_2:78778489-78778508 | Msa0929960:CDS | 45.0% | |
| AGTAGTAGGAGGTAGGAAGT+AGG | - | chr6_2:78778570-78778589 | Msa0929960:five_prime_UTR | 45.0% | |
| GTAGTAGGAGGTAGGAAGTA+GGG | - | chr6_2:78778571-78778590 | Msa0929960:five_prime_UTR | 45.0% | |
| TAGTAGGAGGTAGGAAGTAG+GGG | - | chr6_2:78778572-78778591 | Msa0929960:five_prime_UTR | 45.0% | |
| CAACAGAATCAGCAGTACAC+TGG | + | chr6_2:78778689-78778708 | None:intergenic | 45.0% | |
| !!! | AAAAATCTTTAATTTATAAA+GGG | + | chr6_2:78777862-78777881 | None:intergenic | 5.0% |
| !!! | AAAAAATCTTTAATTTATAA+AGG | + | chr6_2:78777863-78777882 | None:intergenic | 5.0% |
| ! | CGTCTGAAGCAAGTTGAGTG+GGG | + | chr6_2:78776336-78776355 | None:intergenic | 50.0% |
| ! | GCGTCTGAAGCAAGTTGAGT+GGG | + | chr6_2:78776337-78776356 | None:intergenic | 50.0% |
| ! | TGCGTCTGAAGCAAGTTGAG+TGG | + | chr6_2:78776338-78776357 | None:intergenic | 50.0% |
| TCTGTCTATGGGGAAGGGAA+GGG | + | chr6_2:78776394-78776413 | None:intergenic | 50.0% | |
| ATCTGTCTATGGGGAAGGGA+AGG | + | chr6_2:78776395-78776414 | None:intergenic | 50.0% | |
| TTGTTCGAGGGTGAAGGGAA+CGG | + | chr6_2:78776578-78776597 | None:intergenic | 50.0% | |
| ! | TTGGGTTGTTCGAGGGTGAA+GGG | + | chr6_2:78776583-78776602 | None:intergenic | 50.0% |
| ! | GAGTGAAGTTGGGTTGTTCG+AGG | + | chr6_2:78776591-78776610 | None:intergenic | 50.0% |
| ! | ACGTGGTGGTGAGTGAAGTT+GGG | + | chr6_2:78776601-78776620 | None:intergenic | 50.0% |
| ATCTCAGCGTAAGGAGGATG+GGG | + | chr6_2:78776628-78776647 | None:intergenic | 50.0% | |
| CATCTCAGCGTAAGGAGGAT+GGG | + | chr6_2:78776629-78776648 | None:intergenic | 50.0% | |
| TCATCTCAGCGTAAGGAGGA+TGG | + | chr6_2:78776630-78776649 | None:intergenic | 50.0% | |
| !! | AACAAGGTGCTGTGTTCAGC+TGG | + | chr6_2:78776745-78776764 | None:intergenic | 50.0% |
| TATTGAGAGTGGGAGGTGGA+GGG | + | chr6_2:78776846-78776865 | None:intergenic | 50.0% | |
| GATCTATTGAGAGTGGGAGG+TGG | + | chr6_2:78776850-78776869 | None:intergenic | 50.0% | |
| ! | CCACGACCTCTTTGGGTTAA+AGG | + | chr6_2:78776904-78776923 | None:intergenic | 50.0% |
| CCTTTAACCCAAAGAGGTCG+TGG | - | chr6_2:78776901-78776920 | Msa0929960:CDS | 50.0% | |
| ATGAGGTTGGGCTTGGACTT+AGG | + | chr6_2:78776934-78776953 | None:intergenic | 50.0% | |
| CTGGGCATTTGGTATGAGGT+TGG | + | chr6_2:78776947-78776966 | None:intergenic | 50.0% | |
| ! | GAGAGAAACGAAAACGGGCT+GGG | + | chr6_2:78776965-78776984 | None:intergenic | 50.0% |
| GGGTCGAGAGAAACGAAAAC+GGG | + | chr6_2:78776970-78776989 | None:intergenic | 50.0% | |
| ACAGACACCACAGCAGTTGT+AGG | + | chr6_2:78777000-78777019 | None:intergenic | 50.0% | |
| GTGTCTGTTAAAAGAGGGCG+TGG | - | chr6_2:78777012-78777031 | Msa0929960:intron | 50.0% | |
| AGGCCCAAATCTGTGTCCAA+TGG | - | chr6_2:78777072-78777091 | Msa0929960:CDS | 50.0% | |
| GGCCCAAATCTGTGTCCAAT+GGG | - | chr6_2:78777073-78777092 | Msa0929960:CDS | 50.0% | |
| GAGCCCATTGGACACAGATT+TGG | + | chr6_2:78777079-78777098 | None:intergenic | 50.0% | |
| !!! | GACTGCGATTGGGTTTTAGG+CGG | + | chr6_2:78777120-78777139 | None:intergenic | 50.0% |
| ! | TGCGACTGCGATTGGGTTTT+AGG | + | chr6_2:78777123-78777142 | None:intergenic | 50.0% |
| GTTAGATCTACTAGGCCCAG+AGG | - | chr6_2:78777225-78777244 | Msa0929960:intron | 50.0% | |
| CATCTGCATACTTCTTGGGC+CGG | + | chr6_2:78777251-78777270 | None:intergenic | 50.0% | |
| ! | GCCCAAGAAGTATGCAGATG+CGG | - | chr6_2:78777251-78777270 | Msa0929960:intron | 50.0% |
| CACCGCATCTGCATACTTCT+TGG | + | chr6_2:78777256-78777275 | None:intergenic | 50.0% | |
| ! | CAAGAAGTATGCAGATGCGG+TGG | - | chr6_2:78777254-78777273 | Msa0929960:intron | 50.0% |
| TTGGATTGCTGCAACTGCAG+TGG | + | chr6_2:78778137-78778156 | None:intergenic | 50.0% | |
| TGTGGTTCCGGAAATTGCTG+TGG | + | chr6_2:78778220-78778239 | None:intergenic | 50.0% | |
| ! | AGTGCATGTGGCACTTGTTG+GGG | + | chr6_2:78778322-78778341 | None:intergenic | 50.0% |
| CAGTGCATGTGGCACTTGTT+GGG | + | chr6_2:78778323-78778342 | None:intergenic | 50.0% | |
| GTGGGTTCTTCGCCAAATTG+AGG | + | chr6_2:78778529-78778548 | None:intergenic | 50.0% | |
| GCTTCAGACGCACACAACAC+AGG | - | chr6_2:78776346-78776365 | Msa0929960:three_prime_UTR | 55.0% | |
| AGTCCATGGTGAGTGAGCGA+CGG | + | chr6_2:78776516-78776535 | None:intergenic | 55.0% | |
| AGGTGGAGGAGGGAGATCAA+AGG | + | chr6_2:78776545-78776564 | None:intergenic | 55.0% | |
| ! | GTTGGGTTGTTCGAGGGTGA+AGG | + | chr6_2:78776584-78776603 | None:intergenic | 55.0% |
| ! | CACGTGGTGGTGAGTGAAGT+TGG | + | chr6_2:78776602-78776621 | None:intergenic | 55.0% |
| CAACTTCACTCACCACCACG+TGG | - | chr6_2:78776600-78776619 | Msa0929960:CDS | 55.0% | |
| CTATTGAGAGTGGGAGGTGG+AGG | + | chr6_2:78776847-78776866 | None:intergenic | 55.0% | |
| AGGACGACCACGACCTCTTT+GGG | + | chr6_2:78776911-78776930 | None:intergenic | 55.0% | |
| AGGTTGGGCTTGGACTTAGG+AGG | + | chr6_2:78776931-78776950 | None:intergenic | 55.0% | |
| !! | ACGAAAACGGGCTGGGCATT+TGG | + | chr6_2:78776958-78776977 | None:intergenic | 55.0% |
| CGAGAGAAACGAAAACGGGC+TGG | + | chr6_2:78776966-78776985 | None:intergenic | 55.0% | |
| CAGCAGTTGTAGGAGGAGGA+GGG | + | chr6_2:78776990-78777009 | None:intergenic | 55.0% | |
| ACAGCAGTTGTAGGAGGAGG+AGG | + | chr6_2:78776991-78777010 | None:intergenic | 55.0% | |
| TCCTCCTCCTACAACTGCTG+TGG | - | chr6_2:78776990-78777009 | Msa0929960:intron | 55.0% | |
| ACCACAGCAGTTGTAGGAGG+AGG | + | chr6_2:78776994-78777013 | None:intergenic | 55.0% | |
| GACACCACAGCAGTTGTAGG+AGG | + | chr6_2:78776997-78777016 | None:intergenic | 55.0% | |
| AGGACGTCGTTTGAGCCCAT+TGG | + | chr6_2:78777091-78777110 | None:intergenic | 55.0% | |
| ! | AATGGGCTCAAACGACGTCC+TGG | - | chr6_2:78777090-78777109 | Msa0929960:CDS | 55.0% |
| TGTTGGGTGCGACTGCGATT+GGG | + | chr6_2:78777130-78777149 | None:intergenic | 55.0% | |
| TTGTTGGGTGCGACTGCGAT+TGG | + | chr6_2:78777131-78777150 | None:intergenic | 55.0% | |
| ACAGGAGCAGCAGCAGCAAA+AGG | + | chr6_2:78777162-78777181 | None:intergenic | 55.0% | |
| TCGTCCTAAGAAGCTTGCCG+TGG | - | chr6_2:78777296-78777315 | Msa0929960:intron | 55.0% | |
| TCCTAAGAAGCTTGCCGTGG+TGG | - | chr6_2:78777299-78777318 | Msa0929960:intron | 55.0% | |
| CCTAAGAAGCTTGCCGTGGT+GGG | - | chr6_2:78777300-78777319 | Msa0929960:intron | 55.0% | |
| ATTTATGGGCCTGCCCACCA+CGG | + | chr6_2:78777316-78777335 | None:intergenic | 55.0% | |
| GGCCTTCCGGAGGGATTTAT+GGG | + | chr6_2:78777330-78777349 | None:intergenic | 55.0% | |
| TGGCCTTCCGGAGGGATTTA+TGG | + | chr6_2:78777331-78777350 | None:intergenic | 55.0% | |
| AATCCCTCCGGAAGGCCAAT+TGG | - | chr6_2:78777333-78777352 | Msa0929960:intron | 55.0% | |
| ATCACCTTTGGGCGGCCAAT+TGG | + | chr6_2:78777351-78777370 | None:intergenic | 55.0% | |
| ATTGCTGCAACTGCAGTGGC+TGG | + | chr6_2:78778133-78778152 | None:intergenic | 55.0% | |
| TGTTGCAGCGGTTGTGGTTC+CGG | + | chr6_2:78778232-78778251 | None:intergenic | 55.0% | |
| AGCTCTTGTTGCAGCGGTTG+TGG | + | chr6_2:78778238-78778257 | None:intergenic | 55.0% | |
| GATGGCAGCTCTTGTTGCAG+CGG | + | chr6_2:78778244-78778263 | None:intergenic | 55.0% | |
| TGGGGATGCAGTTGCTGAGA+TGG | + | chr6_2:78778262-78778281 | None:intergenic | 55.0% | |
| TGGGGATGGAGTTGCTGAGA+TGG | + | chr6_2:78778304-78778323 | None:intergenic | 55.0% | |
| ! | CATGTGGCACTTGTTGGGGA+TGG | + | chr6_2:78778318-78778337 | None:intergenic | 55.0% |
| GCAGTGCATGTGGCACTTGT+TGG | + | chr6_2:78778324-78778343 | None:intergenic | 55.0% | |
| TGCTGAGATGGCAGTGCATG+TGG | + | chr6_2:78778334-78778353 | None:intergenic | 55.0% | |
| TGGGGATGGAGTTGCTGAGA+TGG | + | chr6_2:78778304-78778323 | None:intergenic | 55.0% | |
| TGGGGATGCAGTTGCTGAGA+TGG | + | chr6_2:78778262-78778281 | None:intergenic | 55.0% | |
| CCTGTTGCTGCAATGGCATC+TGG | + | chr6_2:78778450-78778469 | None:intergenic | 55.0% | |
| CCAGATGCCATTGCAGCAAC+AGG | - | chr6_2:78778447-78778466 | Msa0929960:CDS | 55.0% | |
| TGCTGCACCTGTTGCTGCAA+TGG | + | chr6_2:78778457-78778476 | None:intergenic | 55.0% | |
| CTACCGTCGCTCACTCACCA+TGG | - | chr6_2:78776510-78776529 | Msa0929960:three_prime_UTR | 60.0% | |
| AGGGTGAAGGGAACGGTGGT+GGG | + | chr6_2:78776571-78776590 | None:intergenic | 60.0% | |
| TTCGAGGGTGAAGGGAACGG+TGG | + | chr6_2:78776575-78776594 | None:intergenic | 60.0% | |
| GAGGACGACCACGACCTCTT+TGG | + | chr6_2:78776912-78776931 | None:intergenic | 60.0% | |
| ! | CGGGCTGGGCATTTGGTATG+AGG | + | chr6_2:78776951-78776970 | None:intergenic | 60.0% |
| !!! | TGGGTTTTAGGCGGACGACC+AGG | + | chr6_2:78777111-78777130 | None:intergenic | 60.0% |
| GATCTACTAGGCCCAGAGGC+CGG | - | chr6_2:78777229-78777248 | Msa0929960:intron | 60.0% | |
| TACTTCTTGGGCCGGCCTCT+GGG | + | chr6_2:78777243-78777262 | None:intergenic | 60.0% | |
| ATACTTCTTGGGCCGGCCTC+TGG | + | chr6_2:78777244-78777263 | None:intergenic | 60.0% | |
| ATGCGGTGGTTCCAGCGACA+AGG | - | chr6_2:78777268-78777287 | Msa0929960:intron | 60.0% | |
| CCCACCACGGCAAGCTTCTT+AGG | + | chr6_2:78777303-78777322 | None:intergenic | 60.0% | |
| GGCAGGCCCATAAATCCCTC+CGG | - | chr6_2:78777321-78777340 | Msa0929960:intron | 60.0% | |
| GGCCCATAAATCCCTCCGGA+AGG | - | chr6_2:78777325-78777344 | Msa0929960:intron | 60.0% | |
| AAGGCCAATTGGCCGCCCAA+AGG | - | chr6_2:78777344-78777363 | Msa0929960:intron | 60.0% | |
| AGTTGCTGAGATGGCAGCGC+CGG | + | chr6_2:78778295-78778314 | None:intergenic | 60.0% | |
| ! | TGTGCCTGTGGCACTTGCTG+GGG | + | chr6_2:78778406-78778425 | None:intergenic | 60.0% |
| CTGTGCCTGTGGCACTTGCT+GGG | + | chr6_2:78778407-78778426 | None:intergenic | 60.0% | |
| TCTGTGCCTGTGGCACTTGC+TGG | + | chr6_2:78778408-78778427 | None:intergenic | 60.0% | |
| ! | TGGTGGGCAGAGGTGGAGGA+GGG | + | chr6_2:78776555-78776574 | None:intergenic | 65.0% |
| !! | AAGGGAACGGTGGTGGGCAG+AGG | + | chr6_2:78776565-78776584 | None:intergenic | 65.0% |
| GAGGGTGAAGGGAACGGTGG+TGG | + | chr6_2:78776572-78776591 | None:intergenic | 65.0% | |
| ! | AAGGAGGATGGGGTGCCACG+TGG | + | chr6_2:78776618-78776637 | None:intergenic | 65.0% |
| GGAGGTGGAGGGAGTGAGGA+AGG | + | chr6_2:78776835-78776854 | None:intergenic | 65.0% | |
| AGTGGGAGGTGGAGGGAGTG+AGG | + | chr6_2:78776839-78776858 | None:intergenic | 65.0% | |
| CGGTGGTTCCAGCGACAAGG+CGG | - | chr6_2:78777271-78777290 | Msa0929960:intron | 65.0% | |
| GGTGGTTCCAGCGACAAGGC+GGG | - | chr6_2:78777272-78777291 | Msa0929960:intron | 65.0% | |
| GTGGTTCCAGCGACAAGGCG+GGG | - | chr6_2:78777273-78777292 | Msa0929960:intron | 65.0% | |
| !! | AGAAGCTTGCCGTGGTGGGC+AGG | - | chr6_2:78777304-78777323 | Msa0929960:intron | 65.0% |
| !! | CGGCCAATTGGCCTTCCGGA+GGG | + | chr6_2:78777339-78777358 | None:intergenic | 65.0% |
| !! | TGGGCGGCCAATTGGCCTTC+CGG | + | chr6_2:78777343-78777362 | None:intergenic | 65.0% |
| GCATCCCCAGCCAGTGTCAC+AGG | - | chr6_2:78778273-78778292 | Msa0929960:CDS | 65.0% | |
| ! | AGCGCCTGTGACACTGGCTG+GGG | + | chr6_2:78778280-78778299 | None:intergenic | 65.0% |
| ! | CAGCGCCTGTGACACTGGCT+GGG | + | chr6_2:78778281-78778300 | None:intergenic | 65.0% |
| GATGGCAGCGCCTGTGACAC+TGG | + | chr6_2:78778286-78778305 | None:intergenic | 65.0% | |
| CCATCCCCAACCAGTGCCAC+CGG | - | chr6_2:78778357-78778376 | Msa0929960:CDS | 65.0% | |
| GCATCCCCAGCAAGTGCCAC+AGG | - | chr6_2:78778399-78778418 | Msa0929960:CDS | 65.0% | |
| !! | GTGGTGGGCAGAGGTGGAGG+AGG | + | chr6_2:78776556-78776575 | None:intergenic | 70.0% |
| !! | ACGGTGGTGGGCAGAGGTGG+AGG | + | chr6_2:78776559-78776578 | None:intergenic | 70.0% |
| !! | GGAACGGTGGTGGGCAGAGG+TGG | + | chr6_2:78776562-78776581 | None:intergenic | 70.0% |
| ! | GAGGATGGGGTGCCACGTGG+TGG | + | chr6_2:78776615-78776634 | None:intergenic | 70.0% |
| ! | AGAGGGCGTGGACGTCCTCC+TGG | - | chr6_2:78777024-78777043 | Msa0929960:intron | 70.0% |
| ! | GAGGGCGTGGACGTCCTCCT+GGG | - | chr6_2:78777025-78777044 | Msa0929960:intron | 70.0% |
| !! | GCGGCCAATTGGCCTTCCGG+AGG | + | chr6_2:78777340-78777359 | None:intergenic | 70.0% |
| GCAGCGCCTGTGACACTGGC+TGG | + | chr6_2:78778282-78778301 | None:intergenic | 70.0% | |
| !! | CCGGTGGCACTGGTTGGGGA+TGG | + | chr6_2:78778360-78778379 | None:intergenic | 70.0% |
| !! | AGCGCCGGTGGCACTGGTTG+GGG | + | chr6_2:78778364-78778383 | None:intergenic | 70.0% |
| !! | CAGCGCCGGTGGCACTGGTT+GGG | + | chr6_2:78778365-78778384 | None:intergenic | 70.0% |
| ! | TGCTGAGATGGCAGCGCCGG+TGG | + | chr6_2:78778376-78778395 | None:intergenic | 70.0% |
| GGACGACCCCGCCTTGTCGC+TGG | + | chr6_2:78777282-78777301 | None:intergenic | 75.0% | |
| !! | GCAGCGCCGGTGGCACTGGT+TGG | + | chr6_2:78778366-78778385 | None:intergenic | 75.0% |
| !! | GATGGCAGCGCCGGTGGCAC+TGG | + | chr6_2:78778370-78778389 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 78776288 | 78778754 | 78776288 | ID=Msa0929960;Name=Msa0929960 |
| chr6_2 | mRNA | 78776288 | 78778754 | 78776288 | ID=Msa0929960-mRNA-1;Parent=Msa0929960;Name=Msa0929960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=241|1|1|1|0.5|0.66|3|244|443 |
| chr6_2 | exon | 78776288 | 78776969 | 78776288 | ID=Msa0929960-mRNA-1:exon:13325;Parent=Msa0929960-mRNA-1 |
| chr6_2 | exon | 78777063 | 78777119 | 78777063 | ID=Msa0929960-mRNA-1:exon:13324;Parent=Msa0929960-mRNA-1 |
| chr6_2 | exon | 78777677 | 78778754 | 78777677 | ID=Msa0929960-mRNA-1:exon:13323;Parent=Msa0929960-mRNA-1 |
| chr6_2 | five_prime_UTR | 78778514 | 78778754 | 78778514 | ID=Msa0929960-mRNA-1:five_prime_utr;Parent=Msa0929960-mRNA-1 |
| chr6_2 | CDS | 78777677 | 78778513 | 78777677 | ID=Msa0929960-mRNA-1:cds;Parent=Msa0929960-mRNA-1 |
| chr6_2 | CDS | 78777063 | 78777119 | 78777063 | ID=Msa0929960-mRNA-1:cds;Parent=Msa0929960-mRNA-1 |
| chr6_2 | CDS | 78776532 | 78776969 | 78776532 | ID=Msa0929960-mRNA-1:cds;Parent=Msa0929960-mRNA-1 |
| chr6_2 | three_prime_UTR | 78776288 | 78776531 | 78776288 | ID=Msa0929960-mRNA-1:three_prime_utr;Parent=Msa0929960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
