Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145180 | XP_003601379.1 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145180 | sp|A1DLW4|FES1_NEOFI | 30.168 | 179 | 121 | 3 | 56 | 233 | 3 | 178 | 2.45e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145180 | G7J6P8 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371980 | Msa1145180 | 0.951696 | 1.183209e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145180 | MtrunA17_Chr3g0119271 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Msa1145180 | MtrunA17_Chr4g0009731 | 31.522 | 276 | 155 | 10 | 56 | 320 | 6 | 258 | 1.51e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145180 | AT3G51980.1 | 55.882 | 374 | 159 | 2 | 3 | 372 | 8 | 379 | 4.12e-138 | 399 |
| Msa1145180 | AT5G02150.1 | 29.492 | 295 | 185 | 10 | 56 | 347 | 6 | 280 | 3.25e-17 | 82.0 |
| Msa1145180 | AT5G02150.3 | 29.492 | 295 | 185 | 10 | 56 | 347 | 6 | 280 | 3.25e-17 | 82.0 |
| Msa1145180 | AT3G09350.1 | 29.588 | 267 | 171 | 7 | 56 | 320 | 6 | 257 | 3.28e-16 | 79.7 |
| Msa1145180 | AT3G53800.1 | 28.467 | 274 | 157 | 7 | 56 | 316 | 6 | 253 | 1.43e-14 | 74.7 |
| Msa1145180 | AT3G53800.2 | 31.628 | 215 | 136 | 5 | 103 | 316 | 10 | 214 | 7.33e-14 | 72.4 |
| Msa1145180 | AT5G02150.2 | 33.645 | 214 | 123 | 8 | 135 | 343 | 42 | 241 | 7.52e-14 | 71.6 |
| Msa1145180 | AT3G09350.4 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
| Msa1145180 | AT3G09350.3 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
| Msa1145180 | AT3G09350.2 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
Find 78 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTAATGCCTTCTTCTA+TGG | 0.201154 | 7_4:-21756412 | None:intergenic |
| TTTAGGGACTTCTGTGCTTT+AGG | 0.230157 | 7_4:+21757357 | Msa1145180:CDS |
| GAATAATGCGTCTACTTCTT+TGG | 0.270695 | 7_4:+21754762 | Msa1145180:CDS |
| ACTCTCAAGGTTGATAATTA+TGG | 0.284619 | 7_4:+21756377 | Msa1145180:CDS |
| CCATGCCACCTCCTATAAAT+AGG | 0.305409 | 7_4:-21754134 | None:intergenic |
| GGAGTGCTTCACCTATTTAT+AGG | 0.315167 | 7_4:+21754123 | Msa1145180:five_prime_UTR |
| GCAACTGCTGCATGGGTTCT+TGG | 0.322183 | 7_4:+21755815 | Msa1145180:CDS |
| GACATTTGAGAACAAAAGTT+AGG | 0.332063 | 7_4:+21757615 | Msa1145180:three_prime_UTR |
| AGCTGGAGGTTTGATGCTTC+AGG | 0.334540 | 7_4:+21756497 | Msa1145180:CDS |
| GAACTTAATCACCATGATTC+TGG | 0.337700 | 7_4:+21755785 | Msa1145180:CDS |
| GAGTTGACATCCTTAGATTA+TGG | 0.356023 | 7_4:+21757527 | Msa1145180:three_prime_UTR |
| TTGATAATTATGGTAAAATC+TGG | 0.364174 | 7_4:+21756387 | Msa1145180:CDS |
| CGACGGCGGGTTTCCTTCAA+TGG | 0.367133 | 7_4:+21754379 | Msa1145180:CDS |
| CTGTCAGATTTAAACAAACT+TGG | 0.385423 | 7_4:+21755740 | Msa1145180:intron |
| ACAATTGTTGCATGATTTGA+TGG | 0.390675 | 7_4:+21757401 | Msa1145180:CDS |
| TTACCATTTGCATTATCTAA+TGG | 0.391821 | 7_4:-21754829 | None:intergenic |
| TCAAATCTAGATGATGATAC+AGG | 0.412030 | 7_4:-21757557 | None:intergenic |
| CTCTTTCCGACTCCGACGGC+GGG | 0.414744 | 7_4:+21754366 | Msa1145180:CDS |
| TCGACGGCAGTTGACAATAA+TGG | 0.418017 | 7_4:-21754314 | None:intergenic |
| AGATAGATACAGAGCTTTGT+TGG | 0.429529 | 7_4:+21754786 | Msa1145180:CDS |
| AGGGACAAGACCATAATCTA+AGG | 0.431080 | 7_4:-21757537 | None:intergenic |
| CATACCTGTTGCTGAAAAGT+TGG | 0.441542 | 7_4:-21755857 | None:intergenic |
| TTAAGAGTCTCTTGCAACTA+AGG | 0.444194 | 7_4:+21757316 | Msa1145180:CDS |
| TTCTGATCCTGAAAAGTTGA+AGG | 0.444386 | 7_4:+21754511 | Msa1145180:CDS |
| TCGGAATAATTTAGCCAGTC+AGG | 0.451248 | 7_4:+21756458 | Msa1145180:CDS |
| CCACAGACTTTAACAGATCC+TGG | 0.468287 | 7_4:-21756750 | None:intergenic |
| ACATTTGAGAACAAAAGTTA+GGG | 0.473456 | 7_4:+21757616 | Msa1145180:three_prime_UTR |
| TTCAACCGACCTTGATCTCC+AGG | 0.485779 | 7_4:+21756786 | Msa1145180:CDS |
| ACTCTTTCCGACTCCGACGG+CGG | 0.491605 | 7_4:+21754365 | Msa1145180:CDS |
| CAGATTTAAACAAACTTGGT+GGG | 0.494134 | 7_4:+21755744 | Msa1145180:intron |
| TGTAACATGCTATCCATTGA+AGG | 0.495417 | 7_4:-21754392 | None:intergenic |
| CGACCTTGATCTCCAGGAAA+AGG | 0.496260 | 7_4:+21756792 | Msa1145180:CDS |
| GAACCATTAGATAATGCAAA+TGG | 0.497296 | 7_4:+21754826 | Msa1145180:CDS |
| TCAGATTTAAACAAACTTGG+TGG | 0.499536 | 7_4:+21755743 | Msa1145180:intron |
| GCATGATTTGATGGCGGATG+AGG | 0.511123 | 7_4:+21757410 | Msa1145180:CDS |
| ACTAGCTCTCATACTCTTCA+CGG | 0.518094 | 7_4:+21754247 | Msa1145180:CDS |
| CAATGGATAGCATGTTACAC+TGG | 0.520749 | 7_4:+21754396 | Msa1145180:CDS |
| GAATTGTTCTATGCTGAAGC+TGG | 0.531227 | 7_4:+21756480 | Msa1145180:CDS |
| CCTATTTATAGGAGGTGGCA+TGG | 0.531624 | 7_4:+21754134 | Msa1145180:five_prime_UTR |
| CTTCACCTATTTATAGGAGG+TGG | 0.534003 | 7_4:+21754129 | Msa1145180:five_prime_UTR |
| ACGCTGTTTCAGCTTTGACT+CGG | 0.535198 | 7_4:+21756439 | Msa1145180:CDS |
| TATTAGAGCAACTGCTGCAT+GGG | 0.537407 | 7_4:+21755808 | Msa1145180:CDS |
| AAACATTTACCATAGAAAGC+TGG | 0.539602 | 7_4:+21757482 | Msa1145180:CDS |
| TTATTCCAGGTCTTGGAACT+CGG | 0.544413 | 7_4:+21756351 | Msa1145180:intron |
| AAATCTGGTTCCATAGAAGA+AGG | 0.545793 | 7_4:+21756402 | Msa1145180:CDS |
| GAGAGACTATGTAATGGATG+TGG | 0.547171 | 7_4:+21757437 | Msa1145180:CDS |
| GTATTAGAGCAACTGCTGCA+TGG | 0.549978 | 7_4:+21755807 | Msa1145180:CDS |
| TTGCTCTAATACCAGAATCA+TGG | 0.552550 | 7_4:-21755796 | None:intergenic |
| TGATATCAAACTTCGGAGGA+AGG | 0.564399 | 7_4:+21756651 | Msa1145180:CDS |
| AGCATAGAACAATTCCTGAC+TGG | 0.564526 | 7_4:-21756472 | None:intergenic |
| GGCATCCGTTGGAAGTAGAT+CGG | 0.568395 | 7_4:-21754342 | None:intergenic |
| GGATCAGAGAGACTATGTAA+TGG | 0.571622 | 7_4:+21757431 | Msa1145180:CDS |
| TGGAACTCGGTGTACTCTCA+AGG | 0.571684 | 7_4:+21756364 | Msa1145180:CDS |
| TCGGAAAGAGTGGCATCCGT+TGG | 0.572432 | 7_4:-21754353 | None:intergenic |
| AGGAAACCCGCCGTCGGAGT+CGG | 0.575203 | 7_4:-21754372 | None:intergenic |
| GGAAAACGTTCGTATTGAAG+TGG | 0.575386 | 7_4:+21757458 | Msa1145180:CDS |
| CCAGGATCTGTTAAAGTCTG+TGG | 0.581747 | 7_4:+21756750 | Msa1145180:CDS |
| AAGTAGATCGGATTCGTCGA+CGG | 0.584333 | 7_4:-21754330 | None:intergenic |
| TTGTTCTATGCTGAAGCTGG+AGG | 0.589290 | 7_4:+21756483 | Msa1145180:CDS |
| GTTGTTGTCTGTTTCAGCGA+CGG | 0.589673 | 7_4:-21754276 | None:intergenic |
| AGTTGACAATAATGGCTGAC+GGG | 0.590859 | 7_4:-21754306 | None:intergenic |
| GCCGTCGGAGTCGGAAAGAG+TGG | 0.591441 | 7_4:-21754363 | None:intergenic |
| CAAGTATTGATATCAAACTT+CGG | 0.604972 | 7_4:+21756644 | Msa1145180:CDS |
| CAGTTGACAATAATGGCTGA+CGG | 0.605649 | 7_4:-21754307 | None:intergenic |
| GTGCTTCACCTATTTATAGG+AGG | 0.609943 | 7_4:+21754126 | Msa1145180:five_prime_UTR |
| CAAATCTAGATGATGATACA+GGG | 0.614135 | 7_4:-21757556 | None:intergenic |
| CGAATCCGATCTACTTCCAA+CGG | 0.620063 | 7_4:+21754337 | Msa1145180:CDS |
| GCCACTCTTTCCGACTCCGA+CGG | 0.624636 | 7_4:+21754362 | Msa1145180:CDS |
| ATAATGGCTGACGGGAGGTG+AGG | 0.643146 | 7_4:-21754298 | None:intergenic |
| TAAATCAGTCAATAGAAGCA+CGG | 0.644107 | 7_4:-21756674 | None:intergenic |
| AATGGATAGCATGTTACACT+GGG | 0.656603 | 7_4:+21754397 | Msa1145180:CDS |
| TGACAATAATGGCTGACGGG+AGG | 0.669052 | 7_4:-21754303 | None:intergenic |
| CAAACTTGGTGGGCTTCATG+CGG | 0.669848 | 7_4:+21755754 | Msa1145180:CDS |
| CATTTGAGAACAAAAGTTAG+GGG | 0.670948 | 7_4:+21757617 | Msa1145180:three_prime_UTR |
| CATTGAAGGAAACCCGCCGT+CGG | 0.674651 | 7_4:-21754378 | None:intergenic |
| ATTGTTGCATGATTTGATGG+CGG | 0.681664 | 7_4:+21757404 | Msa1145180:CDS |
| AGCTCTCATACTCTTCACGG+CGG | 0.722788 | 7_4:+21754250 | Msa1145180:CDS |
| GTATTGATATCAAACTTCGG+AGG | 0.727448 | 7_4:+21756647 | Msa1145180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAAAATACTTTTTTTTAT+AGG | + | chr7_4:21754956-21754975 | Msa1145180:intron | 10.0% |
| !!! | TTGATTTTTTGTTTTGTTTT+AGG | + | chr7_4:21754485-21754504 | Msa1145180:intron | 15.0% |
| !! | TTTATTTATTTATGTGATTG+TGG | + | chr7_4:21754663-21754682 | Msa1145180:intron | 15.0% |
| !!! | TTATGAATTATGATAGTTTT+CGG | + | chr7_4:21755001-21755020 | Msa1145180:intron | 15.0% |
| !! | TTGAAATATTTCATAAGTAT+CGG | - | chr7_4:21756046-21756065 | None:intergenic | 15.0% |
| !! | TTCTTATTATTGATCTAATT+AGG | + | chr7_4:21756981-21757000 | Msa1145180:intron | 15.0% |
| !! | TTGATTTACTTTATTATCAA+AGG | + | chr7_4:21757125-21757144 | Msa1145180:intron | 15.0% |
| !!! | TTTCGTTTTCTATAATCAAA+TGG | + | chr7_4:21754208-21754227 | Msa1145180:exon | 20.0% |
| !! | TACTATAATGTTTATTCACT+TGG | + | chr7_4:21754889-21754908 | Msa1145180:intron | 20.0% |
| !! | ACTATAATGTTTATTCACTT+GGG | + | chr7_4:21754890-21754909 | Msa1145180:intron | 20.0% |
| !!! | TATGAATTATGATAGTTTTC+GGG | + | chr7_4:21755002-21755021 | Msa1145180:intron | 20.0% |
| !! | TATGTATTCAAATATAGACT+TGG | + | chr7_4:21755455-21755474 | Msa1145180:intron | 20.0% |
| !! | TGAATATTATGAACAAATGA+CGG | - | chr7_4:21755646-21755665 | None:intergenic | 20.0% |
| !!! | TTGATAATTATGGTAAAATC+TGG | + | chr7_4:21756387-21756406 | Msa1145180:CDS | 20.0% |
| !! | GATAATATTAACACTTAGAT+AGG | - | chr7_4:21756526-21756545 | None:intergenic | 20.0% |
| !!! | TCAAAATGTTTTGTTTTTCT+AGG | - | chr7_4:21756916-21756935 | None:intergenic | 20.0% |
| ! | TTACCATTTGCATTATCTAA+TGG | - | chr7_4:21754832-21754851 | None:intergenic | 25.0% |
| !! | TCAGACCTTAAATACTTTTA+AGG | + | chr7_4:21755280-21755299 | Msa1145180:intron | 25.0% |
| !!! | CATAGCCTTAAAAGTATTTA+AGG | - | chr7_4:21755288-21755307 | None:intergenic | 25.0% |
| !!! | AATACTTTTAAGGCTATGTT+TGG | + | chr7_4:21755290-21755309 | Msa1145180:intron | 25.0% |
| ! | GTATATAAAGAACTTCACAT+GGG | - | chr7_4:21755610-21755629 | None:intergenic | 25.0% |
| ! | CATGTGAAGTTCTTTATATA+CGG | + | chr7_4:21755609-21755628 | Msa1145180:intron | 25.0% |
| ! | TTATGAATGCACTATTAAAC+AGG | - | chr7_4:21755704-21755723 | None:intergenic | 25.0% |
| ! | GTTAGTATAAATATTCTCTG+AGG | - | chr7_4:21755963-21755982 | None:intergenic | 25.0% |
| ! | AAAATAAGTAGAGGATACTA+GGG | - | chr7_4:21756083-21756102 | None:intergenic | 25.0% |
| ! | AAGTATAGATATAAGAAAGC+AGG | - | chr7_4:21756127-21756146 | None:intergenic | 25.0% |
| ! | TTATATCAGAATAAGTGCAT+AGG | - | chr7_4:21756248-21756267 | None:intergenic | 25.0% |
| ! | CTGATATAAATCTTAGTAAG+CGG | + | chr7_4:21756259-21756278 | Msa1145180:intron | 25.0% |
| !! | TGTTGATACTTGAACTTTTT+AGG | + | chr7_4:21756606-21756625 | Msa1145180:intron | 25.0% |
| !!! | GAACTTTTTAGGATATTTTG+AGG | + | chr7_4:21756617-21756636 | Msa1145180:intron | 25.0% |
| !!! | CAAGTATTGATATCAAACTT+CGG | + | chr7_4:21756644-21756663 | Msa1145180:CDS | 25.0% |
| ! | ACATTAGAAGAACAATCTTA+TGG | - | chr7_4:21756951-21756970 | None:intergenic | 25.0% |
| ! | CTTGTTGAATTTGTGTAAAA+TGG | + | chr7_4:21757067-21757086 | Msa1145180:intron | 25.0% |
| ! | TAAAATGGTAAATGTACTTG+TGG | + | chr7_4:21757082-21757101 | Msa1145180:intron | 25.0% |
| ! | ACATTTGAGAACAAAAGTTA+GGG | + | chr7_4:21757616-21757635 | Msa1145180:three_prime_UTR | 25.0% |
| !!! | ATACCGTCTATTTTTCTATT+TGG | + | chr7_4:21757675-21757694 | Msa1145180:three_prime_UTR | 25.0% |
| ! | TCACCAAATAGAAAAATAGA+CGG | - | chr7_4:21757681-21757700 | None:intergenic | 25.0% |
| !!! | GGTGTTTTAACAGGAAATAA+TGG | + | chr7_4:21754684-21754703 | Msa1145180:intron | 30.0% |
| GAACCATTAGATAATGCAAA+TGG | + | chr7_4:21754826-21754845 | Msa1145180:CDS | 30.0% | |
| GCAAATGTTAGTAAAGTTAG+TGG | + | chr7_4:21754978-21754997 | Msa1145180:intron | 30.0% | |
| TCAGCTAACATATATCAAAG+AGG | - | chr7_4:21755245-21755264 | None:intergenic | 30.0% | |
| CGTATATAAAGAACTTCACA+TGG | - | chr7_4:21755611-21755630 | None:intergenic | 30.0% | |
| TTCTTTATATACGGTAGAAG+TGG | + | chr7_4:21755618-21755637 | Msa1145180:intron | 30.0% | |
| CTGTCAGATTTAAACAAACT+TGG | + | chr7_4:21755740-21755759 | Msa1145180:intron | 30.0% | |
| TCAGATTTAAACAAACTTGG+TGG | + | chr7_4:21755743-21755762 | Msa1145180:intron | 30.0% | |
| CAGATTTAAACAAACTTGGT+GGG | + | chr7_4:21755744-21755763 | Msa1145180:intron | 30.0% | |
| ! | GGTGTTACATTCATGATTTA+TGG | + | chr7_4:21755879-21755898 | Msa1145180:intron | 30.0% |
| AGAATTGCAATGAATGCAAA+AGG | + | chr7_4:21756020-21756039 | Msa1145180:intron | 30.0% | |
| AAATAAGTAGAGGATACTAG+GGG | - | chr7_4:21756082-21756101 | None:intergenic | 30.0% | |
| GAAAATAAGTAGAGGATACT+AGG | - | chr7_4:21756084-21756103 | None:intergenic | 30.0% | |
| TAGATATAAGAAAGCAGGTT+AGG | - | chr7_4:21756122-21756141 | None:intergenic | 30.0% | |
| !!! | AAGCGGTTGTTTTTTAACAA+AGG | + | chr7_4:21756276-21756295 | Msa1145180:intron | 30.0% |
| TGCCAAATTTCAATTATTCC+AGG | + | chr7_4:21756338-21756357 | Msa1145180:intron | 30.0% | |
| GACCTGGAATAATTGAAATT+TGG | - | chr7_4:21756343-21756362 | None:intergenic | 30.0% | |
| ATTTCAATTATTCCAGGTCT+TGG | + | chr7_4:21756344-21756363 | Msa1145180:intron | 30.0% | |
| !! | ACTCTCAAGGTTGATAATTA+TGG | + | chr7_4:21756377-21756396 | Msa1145180:CDS | 30.0% |
| TAAATCAGTCAATAGAAGCA+CGG | - | chr7_4:21756677-21756696 | None:intergenic | 30.0% | |
| AGATCCTGGTTATTGAAAAA+TGG | - | chr7_4:21756739-21756758 | None:intergenic | 30.0% | |
| GAAGAACAATCTTATGGAAA+AGG | - | chr7_4:21756945-21756964 | None:intergenic | 30.0% | |
| GGATTGAATTACAGAAATGA+GGG | - | chr7_4:21757018-21757037 | None:intergenic | 30.0% | |
| TGGATTGAATTACAGAAATG+AGG | - | chr7_4:21757019-21757038 | None:intergenic | 30.0% | |
| !! | ATGTTGAGATTTTGAGAACA+TGG | - | chr7_4:21757039-21757058 | None:intergenic | 30.0% |
| ACACAAATTCAACAAGTCAT+AGG | - | chr7_4:21757063-21757082 | None:intergenic | 30.0% | |
| ACTTCTTGGATGTATTAAAC+AGG | + | chr7_4:21757281-21757300 | Msa1145180:intron | 30.0% | |
| ACAATTGTTGCATGATTTGA+TGG | + | chr7_4:21757401-21757420 | Msa1145180:CDS | 30.0% | |
| AAACATTTACCATAGAAAGC+TGG | + | chr7_4:21757482-21757501 | Msa1145180:CDS | 30.0% | |
| CAAATCTAGATGATGATACA+GGG | - | chr7_4:21757559-21757578 | None:intergenic | 30.0% | |
| TCAAATCTAGATGATGATAC+AGG | - | chr7_4:21757560-21757579 | None:intergenic | 30.0% | |
| GACATTTGAGAACAAAAGTT+AGG | + | chr7_4:21757615-21757634 | Msa1145180:three_prime_UTR | 30.0% | |
| CATTTGAGAACAAAAGTTAG+GGG | + | chr7_4:21757617-21757636 | Msa1145180:three_prime_UTR | 30.0% | |
| TGTAACATGCTATCCATTGA+AGG | - | chr7_4:21754395-21754414 | None:intergenic | 35.0% | |
| AATGGATAGCATGTTACACT+GGG | + | chr7_4:21754397-21754416 | Msa1145180:CDS | 35.0% | |
| TTCTGATCCTGAAAAGTTGA+AGG | + | chr7_4:21754511-21754530 | Msa1145180:CDS | 35.0% | |
| !!! | TGACGTTTTTGAAGTTCACT+CGG | - | chr7_4:21754566-21754585 | None:intergenic | 35.0% |
| TTGTTTGTGTGTGTTGTATG+TGG | + | chr7_4:21754619-21754638 | Msa1145180:intron | 35.0% | |
| !!! | TGTGATTGTGGTGTTTTAAC+AGG | + | chr7_4:21754675-21754694 | Msa1145180:intron | 35.0% |
| GAATAATGCGTCTACTTCTT+TGG | + | chr7_4:21754762-21754781 | Msa1145180:CDS | 35.0% | |
| ! | AGATAGATACAGAGCTTTGT+TGG | + | chr7_4:21754786-21754805 | Msa1145180:CDS | 35.0% |
| TAAGTCTTGCCTAAGTAGTT+CGG | - | chr7_4:21755069-21755088 | None:intergenic | 35.0% | |
| GCTAACAATGAAAGTTCAAG+TGG | - | chr7_4:21755103-21755122 | None:intergenic | 35.0% | |
| !!! | CTTTTAAGGCTATGTTTGGA+TGG | + | chr7_4:21755294-21755313 | Msa1145180:intron | 35.0% |
| ! | TTTTGTGTTAAGGTGCGTTT+GGG | - | chr7_4:21755483-21755502 | None:intergenic | 35.0% |
| ! | TCTTGCTCTGTTTTGTGTTA+AGG | - | chr7_4:21755493-21755512 | None:intergenic | 35.0% |
| GAACTTAATCACCATGATTC+TGG | + | chr7_4:21755785-21755804 | Msa1145180:CDS | 35.0% | |
| TTGCTCTAATACCAGAATCA+TGG | - | chr7_4:21755799-21755818 | None:intergenic | 35.0% | |
| CAATGCAGGAAAATAAGTAG+AGG | - | chr7_4:21756092-21756111 | None:intergenic | 35.0% | |
| AATGAAACAGTTTGCATGAG+AGG | - | chr7_4:21756217-21756236 | None:intergenic | 35.0% | |
| ! | AAATCTGGTTCCATAGAAGA+AGG | + | chr7_4:21756402-21756421 | Msa1145180:CDS | 35.0% |
| TGCTTTAATGCCTTCTTCTA+TGG | - | chr7_4:21756415-21756434 | None:intergenic | 35.0% | |
| ! | GTATTGATATCAAACTTCGG+AGG | + | chr7_4:21756647-21756666 | Msa1145180:CDS | 35.0% |
| !! | ACCACCATTTTTCAATAACC+AGG | + | chr7_4:21756732-21756751 | Msa1145180:CDS | 35.0% |
| TCCTGGTTATTGAAAAATGG+TGG | - | chr7_4:21756736-21756755 | None:intergenic | 35.0% | |
| ! | TTCTAACAATCACCTTTTCC+TGG | - | chr7_4:21756807-21756826 | None:intergenic | 35.0% |
| ACATTTGCATCACACAGATA+AGG | - | chr7_4:21756876-21756895 | None:intergenic | 35.0% | |
| ! | TTTTTCTAGGTGAGAGTTGA+TGG | - | chr7_4:21756903-21756922 | None:intergenic | 35.0% |
| ! | AAGGAGTATGATCAGTAGAA+TGG | + | chr7_4:21757144-21757163 | Msa1145180:intron | 35.0% |
| TCAATTTGTGTCATGCATAC+CGG | + | chr7_4:21757198-21757217 | Msa1145180:intron | 35.0% | |
| GTTTGCACAAAAAGAACTAC+CGG | - | chr7_4:21757220-21757239 | None:intergenic | 35.0% | |
| CTCAACATGAAACACAAAAG+GGG | - | chr7_4:21757250-21757269 | None:intergenic | 35.0% | |
| GCTCAACATGAAACACAAAA+GGG | - | chr7_4:21757251-21757270 | None:intergenic | 35.0% | |
| AGCTCAACATGAAACACAAA+AGG | - | chr7_4:21757252-21757271 | None:intergenic | 35.0% | |
| ! | TGTGTTTCATGTTGAGCTTT+TGG | + | chr7_4:21757254-21757273 | Msa1145180:intron | 35.0% |
| TTAAGAGTCTCTTGCAACTA+AGG | + | chr7_4:21757316-21757335 | Msa1145180:CDS | 35.0% | |
| ! | CACTAAAGCTCGAGTTTTTA+GGG | + | chr7_4:21757341-21757360 | Msa1145180:CDS | 35.0% |
| ATTGTTGCATGATTTGATGG+CGG | + | chr7_4:21757404-21757423 | Msa1145180:CDS | 35.0% | |
| GAGTTGACATCCTTAGATTA+TGG | + | chr7_4:21757527-21757546 | Msa1145180:three_prime_UTR | 35.0% | |
| ! | GGAGTGCTTCACCTATTTAT+AGG | + | chr7_4:21754123-21754142 | Msa1145180:five_prime_UTR | 40.0% |
| GTGCTTCACCTATTTATAGG+AGG | + | chr7_4:21754126-21754145 | Msa1145180:five_prime_UTR | 40.0% | |
| CTTCACCTATTTATAGGAGG+TGG | + | chr7_4:21754129-21754148 | Msa1145180:five_prime_UTR | 40.0% | |
| ! | ACTAGCTCTCATACTCTTCA+CGG | + | chr7_4:21754247-21754266 | Msa1145180:CDS | 40.0% |
| AGTTGACAATAATGGCTGAC+GGG | - | chr7_4:21754309-21754328 | None:intergenic | 40.0% | |
| CAGTTGACAATAATGGCTGA+CGG | - | chr7_4:21754310-21754329 | None:intergenic | 40.0% | |
| CAATGGATAGCATGTTACAC+TGG | + | chr7_4:21754396-21754415 | Msa1145180:CDS | 40.0% | |
| !! | GCTGATTCCTTCAACTTTTC+AGG | - | chr7_4:21754521-21754540 | None:intergenic | 40.0% |
| TTAAGGCTATGTTTGGATGG+AGG | + | chr7_4:21755297-21755316 | Msa1145180:intron | 40.0% | |
| TAAGGCTATGTTTGGATGGA+GGG | + | chr7_4:21755298-21755317 | Msa1145180:intron | 40.0% | |
| !!! | TTTGGATGGAGGGTTTTAGA+GGG | + | chr7_4:21755308-21755327 | Msa1145180:intron | 40.0% |
| ! | GTTTTGTGTTAAGGTGCGTT+TGG | - | chr7_4:21755484-21755503 | None:intergenic | 40.0% |
| AACACAAAACAGAGCAAGAG+TGG | + | chr7_4:21755494-21755513 | Msa1145180:intron | 40.0% | |
| TATTAGAGCAACTGCTGCAT+GGG | + | chr7_4:21755808-21755827 | Msa1145180:CDS | 40.0% | |
| ! | CAATCCAACTTTTCAGCAAC+AGG | + | chr7_4:21755853-21755872 | Msa1145180:CDS | 40.0% |
| CATACCTGTTGCTGAAAAGT+TGG | - | chr7_4:21755860-21755879 | None:intergenic | 40.0% | |
| ! | CAACTTTTCAGCAACAGGTA+TGG | + | chr7_4:21755858-21755877 | Msa1145180:intron | 40.0% |
| TTTCCAGTGAGACAAGTACT+GGG | - | chr7_4:21756163-21756182 | None:intergenic | 40.0% | |
| ATTTCCAGTGAGACAAGTAC+TGG | - | chr7_4:21756164-21756183 | None:intergenic | 40.0% | |
| TTTGCATGAGAGGCAATTGA+GGG | - | chr7_4:21756207-21756226 | None:intergenic | 40.0% | |
| TTATTCCAGGTCTTGGAACT+CGG | + | chr7_4:21756351-21756370 | Msa1145180:intron | 40.0% | |
| TCGGAATAATTTAGCCAGTC+AGG | + | chr7_4:21756458-21756477 | Msa1145180:CDS | 40.0% | |
| AGCATAGAACAATTCCTGAC+TGG | - | chr7_4:21756475-21756494 | None:intergenic | 40.0% | |
| GAATTGTTCTATGCTGAAGC+TGG | + | chr7_4:21756480-21756499 | Msa1145180:CDS | 40.0% | |
| TGATATCAAACTTCGGAGGA+AGG | + | chr7_4:21756651-21756670 | Msa1145180:CDS | 40.0% | |
| TGATCAGTAGAATGGAAGTG+AGG | + | chr7_4:21757152-21757171 | Msa1145180:intron | 40.0% | |
| GATCAGTAGAATGGAAGTGA+GGG | + | chr7_4:21757153-21757172 | Msa1145180:intron | 40.0% | |
| !!! | GAGCTTTTGGTTTGACTTCT+TGG | + | chr7_4:21757267-21757286 | Msa1145180:intron | 40.0% |
| ! | CCTAAAAACTCGAGCTTTAG+TGG | - | chr7_4:21757343-21757362 | None:intergenic | 40.0% |
| ! | CCACTAAAGCTCGAGTTTTT+AGG | + | chr7_4:21757340-21757359 | Msa1145180:CDS | 40.0% |
| TTTAGGGACTTCTGTGCTTT+AGG | + | chr7_4:21757357-21757376 | Msa1145180:CDS | 40.0% | |
| GGATCAGAGAGACTATGTAA+TGG | + | chr7_4:21757431-21757450 | Msa1145180:CDS | 40.0% | |
| !! | GAGAGACTATGTAATGGATG+TGG | + | chr7_4:21757437-21757456 | Msa1145180:CDS | 40.0% |
| GGAAAACGTTCGTATTGAAG+TGG | + | chr7_4:21757458-21757477 | Msa1145180:CDS | 40.0% | |
| !! | ACTGCTTTTCCAGCTTTCTA+TGG | - | chr7_4:21757494-21757513 | None:intergenic | 40.0% |
| AGGGACAAGACCATAATCTA+AGG | - | chr7_4:21757540-21757559 | None:intergenic | 40.0% | |
| CCATGCCACCTCCTATAAAT+AGG | - | chr7_4:21754137-21754156 | None:intergenic | 45.0% | |
| CCTATTTATAGGAGGTGGCA+TGG | + | chr7_4:21754134-21754153 | Msa1145180:five_prime_UTR | 45.0% | |
| GTTGTTGTCTGTTTCAGCGA+CGG | - | chr7_4:21754279-21754298 | None:intergenic | 45.0% | |
| TCGACGGCAGTTGACAATAA+TGG | - | chr7_4:21754317-21754336 | None:intergenic | 45.0% | |
| AAGTAGATCGGATTCGTCGA+CGG | - | chr7_4:21754333-21754352 | None:intergenic | 45.0% | |
| CGAATCCGATCTACTTCCAA+CGG | + | chr7_4:21754337-21754356 | Msa1145180:CDS | 45.0% | |
| !! | TAGTTTTCGGGATCGTACCT+AGG | + | chr7_4:21755014-21755033 | Msa1145180:intron | 45.0% |
| TCTTGCCTAAGTAGTTCGGT+CGG | - | chr7_4:21755065-21755084 | None:intergenic | 45.0% | |
| !! | GTTTGGATGGAGGGTTTTAG+AGG | + | chr7_4:21755307-21755326 | Msa1145180:intron | 45.0% |
| !!! | TTGGATGGAGGGTTTTAGAG+GGG | + | chr7_4:21755309-21755328 | Msa1145180:intron | 45.0% |
| AGAGTGGTAGATCCCAATGT+TGG | + | chr7_4:21755510-21755529 | Msa1145180:intron | 45.0% | |
| TGAGAGAAGCCACCAACATT+GGG | - | chr7_4:21755525-21755544 | None:intergenic | 45.0% | |
| GTATTAGAGCAACTGCTGCA+TGG | + | chr7_4:21755807-21755826 | Msa1145180:CDS | 45.0% | |
| ATTCTACAACAGCGCAACAC+TGG | - | chr7_4:21756005-21756024 | None:intergenic | 45.0% | |
| GGTTAGGAGAAGATCAATGC+AGG | - | chr7_4:21756106-21756125 | None:intergenic | 45.0% | |
| TTGCATGAGAGGCAATTGAG+GGG | - | chr7_4:21756206-21756225 | None:intergenic | 45.0% | |
| GTTTGCATGAGAGGCAATTG+AGG | - | chr7_4:21756208-21756227 | None:intergenic | 45.0% | |
| ! | ACGCTGTTTCAGCTTTGACT+CGG | + | chr7_4:21756439-21756458 | Msa1145180:CDS | 45.0% |
| TTGTTCTATGCTGAAGCTGG+AGG | + | chr7_4:21756483-21756502 | Msa1145180:CDS | 45.0% | |
| CCACAGACTTTAACAGATCC+TGG | - | chr7_4:21756753-21756772 | None:intergenic | 45.0% | |
| CCAGGATCTGTTAAAGTCTG+TGG | + | chr7_4:21756750-21756769 | Msa1145180:CDS | 45.0% | |
| ! | CTTTTCCTGGAGATCAAGGT+CGG | - | chr7_4:21756794-21756813 | None:intergenic | 45.0% |
| ! | TCACCTTTTCCTGGAGATCA+AGG | - | chr7_4:21756798-21756817 | None:intergenic | 45.0% |
| !!! | TATTTATCTTTTTTAAATTA+AGG | + | chr7_4:21755338-21755357 | Msa1145180:intron | 5.0% |
| AGCTCTCATACTCTTCACGG+CGG | + | chr7_4:21754250-21754269 | Msa1145180:CDS | 50.0% | |
| TGACAATAATGGCTGACGGG+AGG | - | chr7_4:21754306-21754325 | None:intergenic | 50.0% | |
| GGCATCCGTTGGAAGTAGAT+CGG | - | chr7_4:21754345-21754364 | None:intergenic | 50.0% | |
| ATCGTACCTAGGACCTCCTT+CGG | + | chr7_4:21755025-21755044 | Msa1145180:intron | 50.0% | |
| TAGTTCGGTCGGTGAGCTAA+GGG | - | chr7_4:21755054-21755073 | None:intergenic | 50.0% | |
| GTGGTAGATCCCAATGTTGG+TGG | + | chr7_4:21755513-21755532 | Msa1145180:intron | 50.0% | |
| CTGAGAGAAGCCACCAACAT+TGG | - | chr7_4:21755526-21755545 | None:intergenic | 50.0% | |
| !! | ATGTTGGTGGCTTCTCTCAG+TGG | + | chr7_4:21755526-21755545 | Msa1145180:intron | 50.0% |
| !! | CAAACTTGGTGGGCTTCATG+CGG | + | chr7_4:21755754-21755773 | Msa1145180:CDS | 50.0% |
| GATCCCAGTACTTGTCTCAC+TGG | + | chr7_4:21756157-21756176 | Msa1145180:intron | 50.0% | |
| !! | TGGAACTCGGTGTACTCTCA+AGG | + | chr7_4:21756364-21756383 | Msa1145180:CDS | 50.0% |
| AGCTGGAGGTTTGATGCTTC+AGG | + | chr7_4:21756497-21756516 | Msa1145180:CDS | 50.0% | |
| TTCAACCGACCTTGATCTCC+AGG | + | chr7_4:21756786-21756805 | Msa1145180:CDS | 50.0% | |
| CGACCTTGATCTCCAGGAAA+AGG | + | chr7_4:21756792-21756811 | Msa1145180:CDS | 50.0% | |
| !! | GCATGATTTGATGGCGGATG+AGG | + | chr7_4:21757410-21757429 | Msa1145180:CDS | 50.0% |
| ATAATGGCTGACGGGAGGTG+AGG | - | chr7_4:21754301-21754320 | None:intergenic | 55.0% | |
| TCGGAAAGAGTGGCATCCGT+TGG | - | chr7_4:21754356-21754375 | None:intergenic | 55.0% | |
| CATTGAAGGAAACCCGCCGT+CGG | - | chr7_4:21754381-21754400 | None:intergenic | 55.0% | |
| GTAGTTCGGTCGGTGAGCTA+AGG | - | chr7_4:21755055-21755074 | None:intergenic | 55.0% | |
| GCTCACCGACCGAACTACTT+AGG | + | chr7_4:21755057-21755076 | Msa1145180:intron | 55.0% | |
| !!! | GATGGAGGGTTTTAGAGGGG+AGG | + | chr7_4:21755312-21755331 | Msa1145180:intron | 55.0% |
| GCAACTGCTGCATGGGTTCT+TGG | + | chr7_4:21755815-21755834 | Msa1145180:CDS | 55.0% | |
| ! | GGATACTAGGGGAGAGTGCA+GGG | - | chr7_4:21756071-21756090 | None:intergenic | 55.0% |
| ! | AGGATACTAGGGGAGAGTGC+AGG | - | chr7_4:21756072-21756091 | None:intergenic | 55.0% |
| GTACACCGAGTTCCAAGACC+TGG | - | chr7_4:21756359-21756378 | None:intergenic | 55.0% | |
| GCCACTCTTTCCGACTCCGA+CGG | + | chr7_4:21754362-21754381 | Msa1145180:CDS | 60.0% | |
| ACTCTTTCCGACTCCGACGG+CGG | + | chr7_4:21754365-21754384 | Msa1145180:CDS | 60.0% | |
| ! | CGACGGCGGGTTTCCTTCAA+TGG | + | chr7_4:21754379-21754398 | Msa1145180:CDS | 60.0% |
| GAGCTAAGGGACACCGAAGG+AGG | - | chr7_4:21755041-21755060 | None:intergenic | 60.0% | |
| GGTGAGCTAAGGGACACCGA+AGG | - | chr7_4:21755044-21755063 | None:intergenic | 60.0% | |
| GCCGTCGGAGTCGGAAAGAG+TGG | - | chr7_4:21754366-21754385 | None:intergenic | 65.0% | |
| CTCTTTCCGACTCCGACGGC+GGG | + | chr7_4:21754366-21754385 | Msa1145180:CDS | 65.0% | |
| AGGAAACCCGCCGTCGGAGT+CGG | - | chr7_4:21754375-21754394 | None:intergenic | 65.0% | |
| GGGACACCGAAGGAGGTCCT+AGG | - | chr7_4:21755034-21755053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 21754120 | 21757751 | 21754120 | ID=Msa1145180;Name=Msa1145180 |
| chr7_4 | mRNA | 21754120 | 21757751 | 21754120 | ID=Msa1145180-mRNA-1;Parent=Msa1145180;Name=Msa1145180-mRNA-1;_AED=0.17;_eAED=0.17;_QI=107|1|1|1|1|1|7|236|375 |
| chr7_4 | exon | 21754120 | 21754425 | 21754120 | ID=Msa1145180-mRNA-1:exon:5263;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21754507 | 21754598 | 21754507 | ID=Msa1145180-mRNA-1:exon:5264;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21754697 | 21754847 | 21754697 | ID=Msa1145180-mRNA-1:exon:5265;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21755747 | 21755874 | 21755747 | ID=Msa1145180-mRNA-1:exon:5266;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21756360 | 21756518 | 21756360 | ID=Msa1145180-mRNA-1:exon:5267;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21756628 | 21756813 | 21756628 | ID=Msa1145180-mRNA-1:exon:5268;Parent=Msa1145180-mRNA-1 |
| chr7_4 | exon | 21757303 | 21757751 | 21757303 | ID=Msa1145180-mRNA-1:exon:5269;Parent=Msa1145180-mRNA-1 |
| chr7_4 | five_prime_UTR | 21754120 | 21754226 | 21754120 | ID=Msa1145180-mRNA-1:five_prime_utr;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21754227 | 21754425 | 21754227 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21754507 | 21754598 | 21754507 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21754697 | 21754847 | 21754697 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21755747 | 21755874 | 21755747 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21756360 | 21756518 | 21756360 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21756628 | 21756813 | 21756628 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | CDS | 21757303 | 21757515 | 21757303 | ID=Msa1145180-mRNA-1:cds;Parent=Msa1145180-mRNA-1 |
| chr7_4 | three_prime_UTR | 21757516 | 21757751 | 21757516 | ID=Msa1145180-mRNA-1:three_prime_utr;Parent=Msa1145180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
