Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371980 | XP_003601379.1 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371980 | sp|A1DLW4|FES1_NEOFI | 30.168 | 179 | 121 | 3 | 56 | 233 | 3 | 178 | 2.45e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371980 | G7J6P8 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371980 | Msa0590370 | 0.804176 | 2.449715e-49 | -8.615850e-47 |
| Msa0371980 | Msa1145180 | 0.951696 | 1.183209e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371980 | MtrunA17_Chr3g0119271 | 93.404 | 379 | 20 | 2 | 1 | 375 | 1 | 378 | 0.0 | 674 |
| Msa0371980 | MtrunA17_Chr4g0009731 | 31.522 | 276 | 155 | 10 | 56 | 320 | 6 | 258 | 1.51e-17 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371980 | AT3G51980.1 | 55.882 | 374 | 159 | 2 | 3 | 372 | 8 | 379 | 4.12e-138 | 399 |
| Msa0371980 | AT5G02150.1 | 29.492 | 295 | 185 | 10 | 56 | 347 | 6 | 280 | 3.25e-17 | 82.0 |
| Msa0371980 | AT5G02150.3 | 29.492 | 295 | 185 | 10 | 56 | 347 | 6 | 280 | 3.25e-17 | 82.0 |
| Msa0371980 | AT3G09350.1 | 29.588 | 267 | 171 | 7 | 56 | 320 | 6 | 257 | 3.28e-16 | 79.7 |
| Msa0371980 | AT3G53800.1 | 28.467 | 274 | 157 | 7 | 56 | 316 | 6 | 253 | 1.43e-14 | 74.7 |
| Msa0371980 | AT3G53800.2 | 31.628 | 215 | 136 | 5 | 103 | 316 | 10 | 214 | 7.33e-14 | 72.4 |
| Msa0371980 | AT5G02150.2 | 33.645 | 214 | 123 | 8 | 135 | 343 | 42 | 241 | 7.52e-14 | 71.6 |
| Msa0371980 | AT3G09350.4 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
| Msa0371980 | AT3G09350.3 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
| Msa0371980 | AT3G09350.2 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.27e-12 | 68.6 |
Find 78 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTAATGCCTTCTTCTA+TGG | 0.201154 | 3_1:-70275682 | None:intergenic |
| TTTAGGGACTTCTGTGCTTT+AGG | 0.230157 | 3_1:+70276627 | Msa0371980:CDS |
| GAATAATGCGTCTACTTCTT+TGG | 0.270695 | 3_1:+70274032 | Msa0371980:CDS |
| ACTCTCAAGGTTGATAATTA+TGG | 0.284619 | 3_1:+70275647 | Msa0371980:CDS |
| CCATGCCACCTCCTATAAAT+AGG | 0.305409 | 3_1:-70273404 | None:intergenic |
| GGAGTGCTTCACCTATTTAT+AGG | 0.315167 | 3_1:+70273393 | Msa0371980:five_prime_UTR |
| GCAACTGCTGCATGGGTTCT+TGG | 0.322183 | 3_1:+70275085 | Msa0371980:CDS |
| GACATTTGAGAACAAAAGTT+AGG | 0.332063 | 3_1:+70276885 | Msa0371980:three_prime_UTR |
| AGCTGGAGGTTTGATGCTTC+AGG | 0.334540 | 3_1:+70275767 | Msa0371980:CDS |
| GAACTTAATCACCATGATTC+TGG | 0.337700 | 3_1:+70275055 | Msa0371980:CDS |
| GAGTTGACATCCTTAGATTA+TGG | 0.356023 | 3_1:+70276797 | Msa0371980:three_prime_UTR |
| TTGATAATTATGGTAAAATC+TGG | 0.364174 | 3_1:+70275657 | Msa0371980:CDS |
| CGACGGCGGGTTTCCTTCAA+TGG | 0.367133 | 3_1:+70273649 | Msa0371980:CDS |
| CTGTCAGATTTAAACAAACT+TGG | 0.385423 | 3_1:+70275010 | Msa0371980:intron |
| ACAATTGTTGCATGATTTGA+TGG | 0.390675 | 3_1:+70276671 | Msa0371980:CDS |
| TTACCATTTGCATTATCTAA+TGG | 0.391821 | 3_1:-70274099 | None:intergenic |
| TCAAATCTAGATGATGATAC+AGG | 0.412030 | 3_1:-70276827 | None:intergenic |
| CTCTTTCCGACTCCGACGGC+GGG | 0.414744 | 3_1:+70273636 | Msa0371980:CDS |
| TCGACGGCAGTTGACAATAA+TGG | 0.418017 | 3_1:-70273584 | None:intergenic |
| AGATAGATACAGAGCTTTGT+TGG | 0.429529 | 3_1:+70274056 | Msa0371980:CDS |
| AGGGACAAGACCATAATCTA+AGG | 0.431080 | 3_1:-70276807 | None:intergenic |
| CATACCTGTTGCTGAAAAGT+TGG | 0.441542 | 3_1:-70275127 | None:intergenic |
| TTAAGAGTCTCTTGCAACTA+AGG | 0.444194 | 3_1:+70276586 | Msa0371980:CDS |
| TTCTGATCCTGAAAAGTTGA+AGG | 0.444386 | 3_1:+70273781 | Msa0371980:CDS |
| TCGGAATAATTTAGCCAGTC+AGG | 0.451248 | 3_1:+70275728 | Msa0371980:CDS |
| CCACAGACTTTAACAGATCC+TGG | 0.468287 | 3_1:-70276020 | None:intergenic |
| ACATTTGAGAACAAAAGTTA+GGG | 0.473456 | 3_1:+70276886 | Msa0371980:three_prime_UTR |
| TTCAACCGACCTTGATCTCC+AGG | 0.485779 | 3_1:+70276056 | Msa0371980:CDS |
| ACTCTTTCCGACTCCGACGG+CGG | 0.491605 | 3_1:+70273635 | Msa0371980:CDS |
| CAGATTTAAACAAACTTGGT+GGG | 0.494134 | 3_1:+70275014 | Msa0371980:intron |
| TGTAACATGCTATCCATTGA+AGG | 0.495417 | 3_1:-70273662 | None:intergenic |
| CGACCTTGATCTCCAGGAAA+AGG | 0.496260 | 3_1:+70276062 | Msa0371980:CDS |
| GAACCATTAGATAATGCAAA+TGG | 0.497296 | 3_1:+70274096 | Msa0371980:CDS |
| TCAGATTTAAACAAACTTGG+TGG | 0.499536 | 3_1:+70275013 | Msa0371980:intron |
| GCATGATTTGATGGCGGATG+AGG | 0.511123 | 3_1:+70276680 | Msa0371980:CDS |
| ACTAGCTCTCATACTCTTCA+CGG | 0.518094 | 3_1:+70273517 | Msa0371980:CDS |
| CAATGGATAGCATGTTACAC+TGG | 0.520749 | 3_1:+70273666 | Msa0371980:CDS |
| GAATTGTTCTATGCTGAAGC+TGG | 0.531227 | 3_1:+70275750 | Msa0371980:CDS |
| CCTATTTATAGGAGGTGGCA+TGG | 0.531624 | 3_1:+70273404 | Msa0371980:five_prime_UTR |
| CTTCACCTATTTATAGGAGG+TGG | 0.534003 | 3_1:+70273399 | Msa0371980:five_prime_UTR |
| ACGCTGTTTCAGCTTTGACT+CGG | 0.535198 | 3_1:+70275709 | Msa0371980:CDS |
| TATTAGAGCAACTGCTGCAT+GGG | 0.537407 | 3_1:+70275078 | Msa0371980:CDS |
| AAACATTTACCATAGAAAGC+TGG | 0.539602 | 3_1:+70276752 | Msa0371980:CDS |
| TTATTCCAGGTCTTGGAACT+CGG | 0.544413 | 3_1:+70275621 | Msa0371980:intron |
| AAATCTGGTTCCATAGAAGA+AGG | 0.545793 | 3_1:+70275672 | Msa0371980:CDS |
| GAGAGACTATGTAATGGATG+TGG | 0.547171 | 3_1:+70276707 | Msa0371980:CDS |
| GTATTAGAGCAACTGCTGCA+TGG | 0.549978 | 3_1:+70275077 | Msa0371980:CDS |
| TTGCTCTAATACCAGAATCA+TGG | 0.552550 | 3_1:-70275066 | None:intergenic |
| TGATATCAAACTTCGGAGGA+AGG | 0.564399 | 3_1:+70275921 | Msa0371980:CDS |
| AGCATAGAACAATTCCTGAC+TGG | 0.564526 | 3_1:-70275742 | None:intergenic |
| GGCATCCGTTGGAAGTAGAT+CGG | 0.568395 | 3_1:-70273612 | None:intergenic |
| GGATCAGAGAGACTATGTAA+TGG | 0.571622 | 3_1:+70276701 | Msa0371980:CDS |
| TGGAACTCGGTGTACTCTCA+AGG | 0.571684 | 3_1:+70275634 | Msa0371980:CDS |
| TCGGAAAGAGTGGCATCCGT+TGG | 0.572432 | 3_1:-70273623 | None:intergenic |
| AGGAAACCCGCCGTCGGAGT+CGG | 0.575203 | 3_1:-70273642 | None:intergenic |
| GGAAAACGTTCGTATTGAAG+TGG | 0.575386 | 3_1:+70276728 | Msa0371980:CDS |
| CCAGGATCTGTTAAAGTCTG+TGG | 0.581747 | 3_1:+70276020 | Msa0371980:CDS |
| AAGTAGATCGGATTCGTCGA+CGG | 0.584333 | 3_1:-70273600 | None:intergenic |
| TTGTTCTATGCTGAAGCTGG+AGG | 0.589290 | 3_1:+70275753 | Msa0371980:CDS |
| GTTGTTGTCTGTTTCAGCGA+CGG | 0.589673 | 3_1:-70273546 | None:intergenic |
| AGTTGACAATAATGGCTGAC+GGG | 0.590859 | 3_1:-70273576 | None:intergenic |
| GCCGTCGGAGTCGGAAAGAG+TGG | 0.591441 | 3_1:-70273633 | None:intergenic |
| CAAGTATTGATATCAAACTT+CGG | 0.604972 | 3_1:+70275914 | Msa0371980:CDS |
| CAGTTGACAATAATGGCTGA+CGG | 0.605649 | 3_1:-70273577 | None:intergenic |
| GTGCTTCACCTATTTATAGG+AGG | 0.609943 | 3_1:+70273396 | Msa0371980:five_prime_UTR |
| CAAATCTAGATGATGATACA+GGG | 0.614135 | 3_1:-70276826 | None:intergenic |
| CGAATCCGATCTACTTCCAA+CGG | 0.620063 | 3_1:+70273607 | Msa0371980:CDS |
| GCCACTCTTTCCGACTCCGA+CGG | 0.624636 | 3_1:+70273632 | Msa0371980:CDS |
| ATAATGGCTGACGGGAGGTG+AGG | 0.643146 | 3_1:-70273568 | None:intergenic |
| TAAATCAGTCAATAGAAGCA+CGG | 0.644107 | 3_1:-70275944 | None:intergenic |
| AATGGATAGCATGTTACACT+GGG | 0.656603 | 3_1:+70273667 | Msa0371980:CDS |
| TGACAATAATGGCTGACGGG+AGG | 0.669052 | 3_1:-70273573 | None:intergenic |
| CAAACTTGGTGGGCTTCATG+CGG | 0.669848 | 3_1:+70275024 | Msa0371980:CDS |
| CATTTGAGAACAAAAGTTAG+GGG | 0.670948 | 3_1:+70276887 | Msa0371980:three_prime_UTR |
| CATTGAAGGAAACCCGCCGT+CGG | 0.674651 | 3_1:-70273648 | None:intergenic |
| ATTGTTGCATGATTTGATGG+CGG | 0.681664 | 3_1:+70276674 | Msa0371980:CDS |
| AGCTCTCATACTCTTCACGG+CGG | 0.722788 | 3_1:+70273520 | Msa0371980:CDS |
| GTATTGATATCAAACTTCGG+AGG | 0.727448 | 3_1:+70275917 | Msa0371980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAAAATACTTTTTTTTAT+AGG | + | chr3_1:70274226-70274245 | Msa0371980:intron | 10.0% |
| !!! | TTGATTTTTTGTTTTGTTTT+AGG | + | chr3_1:70273755-70273774 | Msa0371980:intron | 15.0% |
| !! | TTTATTTATTTATGTGATTG+TGG | + | chr3_1:70273933-70273952 | Msa0371980:intron | 15.0% |
| !!! | TTATGAATTATGATAGTTTT+CGG | + | chr3_1:70274271-70274290 | Msa0371980:intron | 15.0% |
| !! | TTGAAATATTTCATAAGTAT+CGG | - | chr3_1:70275316-70275335 | None:intergenic | 15.0% |
| !! | TTCTTATTATTGATCTAATT+AGG | + | chr3_1:70276251-70276270 | Msa0371980:intron | 15.0% |
| !! | TTGATTTACTTTATTATCAA+AGG | + | chr3_1:70276395-70276414 | Msa0371980:intron | 15.0% |
| !!! | TTTCGTTTTCTATAATCAAA+TGG | + | chr3_1:70273478-70273497 | Msa0371980:exon | 20.0% |
| !! | TACTATAATGTTTATTCACT+TGG | + | chr3_1:70274159-70274178 | Msa0371980:intron | 20.0% |
| !! | ACTATAATGTTTATTCACTT+GGG | + | chr3_1:70274160-70274179 | Msa0371980:intron | 20.0% |
| !!! | TATGAATTATGATAGTTTTC+GGG | + | chr3_1:70274272-70274291 | Msa0371980:intron | 20.0% |
| !! | TATGTATTCAAATATAGACT+TGG | + | chr3_1:70274725-70274744 | Msa0371980:intron | 20.0% |
| !! | TGAATATTATGAACAAATGA+CGG | - | chr3_1:70274916-70274935 | None:intergenic | 20.0% |
| !!! | TTGATAATTATGGTAAAATC+TGG | + | chr3_1:70275657-70275676 | Msa0371980:CDS | 20.0% |
| !! | GATAATATTAACACTTAGAT+AGG | - | chr3_1:70275796-70275815 | None:intergenic | 20.0% |
| !!! | TCAAAATGTTTTGTTTTTCT+AGG | - | chr3_1:70276186-70276205 | None:intergenic | 20.0% |
| ! | TTACCATTTGCATTATCTAA+TGG | - | chr3_1:70274102-70274121 | None:intergenic | 25.0% |
| !! | TCAGACCTTAAATACTTTTA+AGG | + | chr3_1:70274550-70274569 | Msa0371980:intron | 25.0% |
| !!! | CATAGCCTTAAAAGTATTTA+AGG | - | chr3_1:70274558-70274577 | None:intergenic | 25.0% |
| !!! | AATACTTTTAAGGCTATGTT+TGG | + | chr3_1:70274560-70274579 | Msa0371980:intron | 25.0% |
| ! | GTATATAAAGAACTTCACAT+GGG | - | chr3_1:70274880-70274899 | None:intergenic | 25.0% |
| ! | CATGTGAAGTTCTTTATATA+CGG | + | chr3_1:70274879-70274898 | Msa0371980:intron | 25.0% |
| ! | TTATGAATGCACTATTAAAC+AGG | - | chr3_1:70274974-70274993 | None:intergenic | 25.0% |
| ! | GTTAGTATAAATATTCTCTG+AGG | - | chr3_1:70275233-70275252 | None:intergenic | 25.0% |
| ! | AAAATAAGTAGAGGATACTA+GGG | - | chr3_1:70275353-70275372 | None:intergenic | 25.0% |
| ! | AAGTATAGATATAAGAAAGC+AGG | - | chr3_1:70275397-70275416 | None:intergenic | 25.0% |
| ! | TTATATCAGAATAAGTGCAT+AGG | - | chr3_1:70275518-70275537 | None:intergenic | 25.0% |
| ! | CTGATATAAATCTTAGTAAG+CGG | + | chr3_1:70275529-70275548 | Msa0371980:intron | 25.0% |
| !! | TGTTGATACTTGAACTTTTT+AGG | + | chr3_1:70275876-70275895 | Msa0371980:intron | 25.0% |
| !!! | GAACTTTTTAGGATATTTTG+AGG | + | chr3_1:70275887-70275906 | Msa0371980:intron | 25.0% |
| !!! | CAAGTATTGATATCAAACTT+CGG | + | chr3_1:70275914-70275933 | Msa0371980:CDS | 25.0% |
| ! | ACATTAGAAGAACAATCTTA+TGG | - | chr3_1:70276221-70276240 | None:intergenic | 25.0% |
| ! | CTTGTTGAATTTGTGTAAAA+TGG | + | chr3_1:70276337-70276356 | Msa0371980:intron | 25.0% |
| ! | TAAAATGGTAAATGTACTTG+TGG | + | chr3_1:70276352-70276371 | Msa0371980:intron | 25.0% |
| ! | ACATTTGAGAACAAAAGTTA+GGG | + | chr3_1:70276886-70276905 | Msa0371980:three_prime_UTR | 25.0% |
| !!! | ATACCGTCTATTTTTCTATT+TGG | + | chr3_1:70276945-70276964 | Msa0371980:three_prime_UTR | 25.0% |
| ! | TCACCAAATAGAAAAATAGA+CGG | - | chr3_1:70276951-70276970 | None:intergenic | 25.0% |
| !!! | GGTGTTTTAACAGGAAATAA+TGG | + | chr3_1:70273954-70273973 | Msa0371980:intron | 30.0% |
| GAACCATTAGATAATGCAAA+TGG | + | chr3_1:70274096-70274115 | Msa0371980:CDS | 30.0% | |
| GCAAATGTTAGTAAAGTTAG+TGG | + | chr3_1:70274248-70274267 | Msa0371980:intron | 30.0% | |
| TCAGCTAACATATATCAAAG+AGG | - | chr3_1:70274515-70274534 | None:intergenic | 30.0% | |
| CGTATATAAAGAACTTCACA+TGG | - | chr3_1:70274881-70274900 | None:intergenic | 30.0% | |
| TTCTTTATATACGGTAGAAG+TGG | + | chr3_1:70274888-70274907 | Msa0371980:intron | 30.0% | |
| CTGTCAGATTTAAACAAACT+TGG | + | chr3_1:70275010-70275029 | Msa0371980:intron | 30.0% | |
| TCAGATTTAAACAAACTTGG+TGG | + | chr3_1:70275013-70275032 | Msa0371980:intron | 30.0% | |
| CAGATTTAAACAAACTTGGT+GGG | + | chr3_1:70275014-70275033 | Msa0371980:intron | 30.0% | |
| ! | GGTGTTACATTCATGATTTA+TGG | + | chr3_1:70275149-70275168 | Msa0371980:intron | 30.0% |
| AGAATTGCAATGAATGCAAA+AGG | + | chr3_1:70275290-70275309 | Msa0371980:intron | 30.0% | |
| AAATAAGTAGAGGATACTAG+GGG | - | chr3_1:70275352-70275371 | None:intergenic | 30.0% | |
| GAAAATAAGTAGAGGATACT+AGG | - | chr3_1:70275354-70275373 | None:intergenic | 30.0% | |
| TAGATATAAGAAAGCAGGTT+AGG | - | chr3_1:70275392-70275411 | None:intergenic | 30.0% | |
| !!! | AAGCGGTTGTTTTTTAACAA+AGG | + | chr3_1:70275546-70275565 | Msa0371980:intron | 30.0% |
| TGCCAAATTTCAATTATTCC+AGG | + | chr3_1:70275608-70275627 | Msa0371980:intron | 30.0% | |
| GACCTGGAATAATTGAAATT+TGG | - | chr3_1:70275613-70275632 | None:intergenic | 30.0% | |
| ATTTCAATTATTCCAGGTCT+TGG | + | chr3_1:70275614-70275633 | Msa0371980:intron | 30.0% | |
| !! | ACTCTCAAGGTTGATAATTA+TGG | + | chr3_1:70275647-70275666 | Msa0371980:CDS | 30.0% |
| TAAATCAGTCAATAGAAGCA+CGG | - | chr3_1:70275947-70275966 | None:intergenic | 30.0% | |
| AGATCCTGGTTATTGAAAAA+TGG | - | chr3_1:70276009-70276028 | None:intergenic | 30.0% | |
| GAAGAACAATCTTATGGAAA+AGG | - | chr3_1:70276215-70276234 | None:intergenic | 30.0% | |
| GGATTGAATTACAGAAATGA+GGG | - | chr3_1:70276288-70276307 | None:intergenic | 30.0% | |
| TGGATTGAATTACAGAAATG+AGG | - | chr3_1:70276289-70276308 | None:intergenic | 30.0% | |
| !! | ATGTTGAGATTTTGAGAACA+TGG | - | chr3_1:70276309-70276328 | None:intergenic | 30.0% |
| ACACAAATTCAACAAGTCAT+AGG | - | chr3_1:70276333-70276352 | None:intergenic | 30.0% | |
| ACTTCTTGGATGTATTAAAC+AGG | + | chr3_1:70276551-70276570 | Msa0371980:intron | 30.0% | |
| ACAATTGTTGCATGATTTGA+TGG | + | chr3_1:70276671-70276690 | Msa0371980:CDS | 30.0% | |
| AAACATTTACCATAGAAAGC+TGG | + | chr3_1:70276752-70276771 | Msa0371980:CDS | 30.0% | |
| CAAATCTAGATGATGATACA+GGG | - | chr3_1:70276829-70276848 | None:intergenic | 30.0% | |
| TCAAATCTAGATGATGATAC+AGG | - | chr3_1:70276830-70276849 | None:intergenic | 30.0% | |
| GACATTTGAGAACAAAAGTT+AGG | + | chr3_1:70276885-70276904 | Msa0371980:three_prime_UTR | 30.0% | |
| CATTTGAGAACAAAAGTTAG+GGG | + | chr3_1:70276887-70276906 | Msa0371980:three_prime_UTR | 30.0% | |
| TGTAACATGCTATCCATTGA+AGG | - | chr3_1:70273665-70273684 | None:intergenic | 35.0% | |
| AATGGATAGCATGTTACACT+GGG | + | chr3_1:70273667-70273686 | Msa0371980:CDS | 35.0% | |
| TTCTGATCCTGAAAAGTTGA+AGG | + | chr3_1:70273781-70273800 | Msa0371980:CDS | 35.0% | |
| !!! | TGACGTTTTTGAAGTTCACT+CGG | - | chr3_1:70273836-70273855 | None:intergenic | 35.0% |
| TTGTTTGTGTGTGTTGTATG+TGG | + | chr3_1:70273889-70273908 | Msa0371980:intron | 35.0% | |
| !!! | TGTGATTGTGGTGTTTTAAC+AGG | + | chr3_1:70273945-70273964 | Msa0371980:intron | 35.0% |
| GAATAATGCGTCTACTTCTT+TGG | + | chr3_1:70274032-70274051 | Msa0371980:CDS | 35.0% | |
| ! | AGATAGATACAGAGCTTTGT+TGG | + | chr3_1:70274056-70274075 | Msa0371980:CDS | 35.0% |
| TAAGTCTTGCCTAAGTAGTT+CGG | - | chr3_1:70274339-70274358 | None:intergenic | 35.0% | |
| GCTAACAATGAAAGTTCAAG+TGG | - | chr3_1:70274373-70274392 | None:intergenic | 35.0% | |
| !!! | CTTTTAAGGCTATGTTTGGA+TGG | + | chr3_1:70274564-70274583 | Msa0371980:intron | 35.0% |
| ! | TTTTGTGTTAAGGTGCGTTT+GGG | - | chr3_1:70274753-70274772 | None:intergenic | 35.0% |
| ! | TCTTGCTCTGTTTTGTGTTA+AGG | - | chr3_1:70274763-70274782 | None:intergenic | 35.0% |
| GAACTTAATCACCATGATTC+TGG | + | chr3_1:70275055-70275074 | Msa0371980:CDS | 35.0% | |
| TTGCTCTAATACCAGAATCA+TGG | - | chr3_1:70275069-70275088 | None:intergenic | 35.0% | |
| CAATGCAGGAAAATAAGTAG+AGG | - | chr3_1:70275362-70275381 | None:intergenic | 35.0% | |
| AATGAAACAGTTTGCATGAG+AGG | - | chr3_1:70275487-70275506 | None:intergenic | 35.0% | |
| ! | AAATCTGGTTCCATAGAAGA+AGG | + | chr3_1:70275672-70275691 | Msa0371980:CDS | 35.0% |
| TGCTTTAATGCCTTCTTCTA+TGG | - | chr3_1:70275685-70275704 | None:intergenic | 35.0% | |
| ! | GTATTGATATCAAACTTCGG+AGG | + | chr3_1:70275917-70275936 | Msa0371980:CDS | 35.0% |
| !! | ACCACCATTTTTCAATAACC+AGG | + | chr3_1:70276002-70276021 | Msa0371980:CDS | 35.0% |
| TCCTGGTTATTGAAAAATGG+TGG | - | chr3_1:70276006-70276025 | None:intergenic | 35.0% | |
| ! | TTCTAACAATCACCTTTTCC+TGG | - | chr3_1:70276077-70276096 | None:intergenic | 35.0% |
| ACATTTGCATCACACAGATA+AGG | - | chr3_1:70276146-70276165 | None:intergenic | 35.0% | |
| ! | TTTTTCTAGGTGAGAGTTGA+TGG | - | chr3_1:70276173-70276192 | None:intergenic | 35.0% |
| ! | AAGGAGTATGATCAGTAGAA+TGG | + | chr3_1:70276414-70276433 | Msa0371980:intron | 35.0% |
| TCAATTTGTGTCATGCATAC+CGG | + | chr3_1:70276468-70276487 | Msa0371980:intron | 35.0% | |
| GTTTGCACAAAAAGAACTAC+CGG | - | chr3_1:70276490-70276509 | None:intergenic | 35.0% | |
| CTCAACATGAAACACAAAAG+GGG | - | chr3_1:70276520-70276539 | None:intergenic | 35.0% | |
| GCTCAACATGAAACACAAAA+GGG | - | chr3_1:70276521-70276540 | None:intergenic | 35.0% | |
| AGCTCAACATGAAACACAAA+AGG | - | chr3_1:70276522-70276541 | None:intergenic | 35.0% | |
| ! | TGTGTTTCATGTTGAGCTTT+TGG | + | chr3_1:70276524-70276543 | Msa0371980:intron | 35.0% |
| TTAAGAGTCTCTTGCAACTA+AGG | + | chr3_1:70276586-70276605 | Msa0371980:CDS | 35.0% | |
| ! | CACTAAAGCTCGAGTTTTTA+GGG | + | chr3_1:70276611-70276630 | Msa0371980:CDS | 35.0% |
| ATTGTTGCATGATTTGATGG+CGG | + | chr3_1:70276674-70276693 | Msa0371980:CDS | 35.0% | |
| GAGTTGACATCCTTAGATTA+TGG | + | chr3_1:70276797-70276816 | Msa0371980:three_prime_UTR | 35.0% | |
| ! | GGAGTGCTTCACCTATTTAT+AGG | + | chr3_1:70273393-70273412 | Msa0371980:five_prime_UTR | 40.0% |
| GTGCTTCACCTATTTATAGG+AGG | + | chr3_1:70273396-70273415 | Msa0371980:five_prime_UTR | 40.0% | |
| CTTCACCTATTTATAGGAGG+TGG | + | chr3_1:70273399-70273418 | Msa0371980:five_prime_UTR | 40.0% | |
| ! | ACTAGCTCTCATACTCTTCA+CGG | + | chr3_1:70273517-70273536 | Msa0371980:CDS | 40.0% |
| AGTTGACAATAATGGCTGAC+GGG | - | chr3_1:70273579-70273598 | None:intergenic | 40.0% | |
| CAGTTGACAATAATGGCTGA+CGG | - | chr3_1:70273580-70273599 | None:intergenic | 40.0% | |
| CAATGGATAGCATGTTACAC+TGG | + | chr3_1:70273666-70273685 | Msa0371980:CDS | 40.0% | |
| !! | GCTGATTCCTTCAACTTTTC+AGG | - | chr3_1:70273791-70273810 | None:intergenic | 40.0% |
| TTAAGGCTATGTTTGGATGG+AGG | + | chr3_1:70274567-70274586 | Msa0371980:intron | 40.0% | |
| TAAGGCTATGTTTGGATGGA+GGG | + | chr3_1:70274568-70274587 | Msa0371980:intron | 40.0% | |
| !!! | TTTGGATGGAGGGTTTTAGA+GGG | + | chr3_1:70274578-70274597 | Msa0371980:intron | 40.0% |
| ! | GTTTTGTGTTAAGGTGCGTT+TGG | - | chr3_1:70274754-70274773 | None:intergenic | 40.0% |
| AACACAAAACAGAGCAAGAG+TGG | + | chr3_1:70274764-70274783 | Msa0371980:intron | 40.0% | |
| TATTAGAGCAACTGCTGCAT+GGG | + | chr3_1:70275078-70275097 | Msa0371980:CDS | 40.0% | |
| ! | CAATCCAACTTTTCAGCAAC+AGG | + | chr3_1:70275123-70275142 | Msa0371980:CDS | 40.0% |
| CATACCTGTTGCTGAAAAGT+TGG | - | chr3_1:70275130-70275149 | None:intergenic | 40.0% | |
| ! | CAACTTTTCAGCAACAGGTA+TGG | + | chr3_1:70275128-70275147 | Msa0371980:intron | 40.0% |
| TTTCCAGTGAGACAAGTACT+GGG | - | chr3_1:70275433-70275452 | None:intergenic | 40.0% | |
| ATTTCCAGTGAGACAAGTAC+TGG | - | chr3_1:70275434-70275453 | None:intergenic | 40.0% | |
| TTTGCATGAGAGGCAATTGA+GGG | - | chr3_1:70275477-70275496 | None:intergenic | 40.0% | |
| TTATTCCAGGTCTTGGAACT+CGG | + | chr3_1:70275621-70275640 | Msa0371980:intron | 40.0% | |
| TCGGAATAATTTAGCCAGTC+AGG | + | chr3_1:70275728-70275747 | Msa0371980:CDS | 40.0% | |
| AGCATAGAACAATTCCTGAC+TGG | - | chr3_1:70275745-70275764 | None:intergenic | 40.0% | |
| GAATTGTTCTATGCTGAAGC+TGG | + | chr3_1:70275750-70275769 | Msa0371980:CDS | 40.0% | |
| TGATATCAAACTTCGGAGGA+AGG | + | chr3_1:70275921-70275940 | Msa0371980:CDS | 40.0% | |
| TGATCAGTAGAATGGAAGTG+AGG | + | chr3_1:70276422-70276441 | Msa0371980:intron | 40.0% | |
| GATCAGTAGAATGGAAGTGA+GGG | + | chr3_1:70276423-70276442 | Msa0371980:intron | 40.0% | |
| !!! | GAGCTTTTGGTTTGACTTCT+TGG | + | chr3_1:70276537-70276556 | Msa0371980:intron | 40.0% |
| ! | CCTAAAAACTCGAGCTTTAG+TGG | - | chr3_1:70276613-70276632 | None:intergenic | 40.0% |
| ! | CCACTAAAGCTCGAGTTTTT+AGG | + | chr3_1:70276610-70276629 | Msa0371980:CDS | 40.0% |
| TTTAGGGACTTCTGTGCTTT+AGG | + | chr3_1:70276627-70276646 | Msa0371980:CDS | 40.0% | |
| GGATCAGAGAGACTATGTAA+TGG | + | chr3_1:70276701-70276720 | Msa0371980:CDS | 40.0% | |
| !! | GAGAGACTATGTAATGGATG+TGG | + | chr3_1:70276707-70276726 | Msa0371980:CDS | 40.0% |
| GGAAAACGTTCGTATTGAAG+TGG | + | chr3_1:70276728-70276747 | Msa0371980:CDS | 40.0% | |
| !! | ACTGCTTTTCCAGCTTTCTA+TGG | - | chr3_1:70276764-70276783 | None:intergenic | 40.0% |
| AGGGACAAGACCATAATCTA+AGG | - | chr3_1:70276810-70276829 | None:intergenic | 40.0% | |
| CCATGCCACCTCCTATAAAT+AGG | - | chr3_1:70273407-70273426 | None:intergenic | 45.0% | |
| CCTATTTATAGGAGGTGGCA+TGG | + | chr3_1:70273404-70273423 | Msa0371980:five_prime_UTR | 45.0% | |
| GTTGTTGTCTGTTTCAGCGA+CGG | - | chr3_1:70273549-70273568 | None:intergenic | 45.0% | |
| TCGACGGCAGTTGACAATAA+TGG | - | chr3_1:70273587-70273606 | None:intergenic | 45.0% | |
| AAGTAGATCGGATTCGTCGA+CGG | - | chr3_1:70273603-70273622 | None:intergenic | 45.0% | |
| CGAATCCGATCTACTTCCAA+CGG | + | chr3_1:70273607-70273626 | Msa0371980:CDS | 45.0% | |
| !! | TAGTTTTCGGGATCGTACCT+AGG | + | chr3_1:70274284-70274303 | Msa0371980:intron | 45.0% |
| TCTTGCCTAAGTAGTTCGGT+CGG | - | chr3_1:70274335-70274354 | None:intergenic | 45.0% | |
| !! | GTTTGGATGGAGGGTTTTAG+AGG | + | chr3_1:70274577-70274596 | Msa0371980:intron | 45.0% |
| !!! | TTGGATGGAGGGTTTTAGAG+GGG | + | chr3_1:70274579-70274598 | Msa0371980:intron | 45.0% |
| TGAGAGAAGCCAGCAACATT+GGG | - | chr3_1:70274795-70274814 | None:intergenic | 45.0% | |
| GTATTAGAGCAACTGCTGCA+TGG | + | chr3_1:70275077-70275096 | Msa0371980:CDS | 45.0% | |
| ATTCTACAACAGCGCAACAC+TGG | - | chr3_1:70275275-70275294 | None:intergenic | 45.0% | |
| GGTTAGGAGAAGATCAATGC+AGG | - | chr3_1:70275376-70275395 | None:intergenic | 45.0% | |
| TTGCATGAGAGGCAATTGAG+GGG | - | chr3_1:70275476-70275495 | None:intergenic | 45.0% | |
| GTTTGCATGAGAGGCAATTG+AGG | - | chr3_1:70275478-70275497 | None:intergenic | 45.0% | |
| ! | ACGCTGTTTCAGCTTTGACT+CGG | + | chr3_1:70275709-70275728 | Msa0371980:CDS | 45.0% |
| TTGTTCTATGCTGAAGCTGG+AGG | + | chr3_1:70275753-70275772 | Msa0371980:CDS | 45.0% | |
| CCACAGACTTTAACAGATCC+TGG | - | chr3_1:70276023-70276042 | None:intergenic | 45.0% | |
| CCAGGATCTGTTAAAGTCTG+TGG | + | chr3_1:70276020-70276039 | Msa0371980:CDS | 45.0% | |
| ! | CTTTTCCTGGAGATCAAGGT+CGG | - | chr3_1:70276064-70276083 | None:intergenic | 45.0% |
| ! | TCACCTTTTCCTGGAGATCA+AGG | - | chr3_1:70276068-70276087 | None:intergenic | 45.0% |
| !!! | TATTTATCTTTTTTAAATTA+AGG | + | chr3_1:70274608-70274627 | Msa0371980:intron | 5.0% |
| AGCTCTCATACTCTTCACGG+CGG | + | chr3_1:70273520-70273539 | Msa0371980:CDS | 50.0% | |
| TGACAATAATGGCTGACGGG+AGG | - | chr3_1:70273576-70273595 | None:intergenic | 50.0% | |
| GGCATCCGTTGGAAGTAGAT+CGG | - | chr3_1:70273615-70273634 | None:intergenic | 50.0% | |
| TAGTTCGGTCGGTGAGCTAA+GGG | - | chr3_1:70274324-70274343 | None:intergenic | 50.0% | |
| GTGGTAGATCCCAATGTTGC+TGG | + | chr3_1:70274783-70274802 | Msa0371980:intron | 50.0% | |
| CTGAGAGAAGCCAGCAACAT+TGG | - | chr3_1:70274796-70274815 | None:intergenic | 50.0% | |
| !! | ATGTTGCTGGCTTCTCTCAG+TGG | + | chr3_1:70274796-70274815 | Msa0371980:intron | 50.0% |
| !! | CAAACTTGGTGGGCTTCATG+CGG | + | chr3_1:70275024-70275043 | Msa0371980:CDS | 50.0% |
| GATCCCAGTACTTGTCTCAC+TGG | + | chr3_1:70275427-70275446 | Msa0371980:intron | 50.0% | |
| !! | TGGAACTCGGTGTACTCTCA+AGG | + | chr3_1:70275634-70275653 | Msa0371980:CDS | 50.0% |
| AGCTGGAGGTTTGATGCTTC+AGG | + | chr3_1:70275767-70275786 | Msa0371980:CDS | 50.0% | |
| TTCAACCGACCTTGATCTCC+AGG | + | chr3_1:70276056-70276075 | Msa0371980:CDS | 50.0% | |
| CGACCTTGATCTCCAGGAAA+AGG | + | chr3_1:70276062-70276081 | Msa0371980:CDS | 50.0% | |
| !! | GCATGATTTGATGGCGGATG+AGG | + | chr3_1:70276680-70276699 | Msa0371980:CDS | 50.0% |
| ATAATGGCTGACGGGAGGTG+AGG | - | chr3_1:70273571-70273590 | None:intergenic | 55.0% | |
| TCGGAAAGAGTGGCATCCGT+TGG | - | chr3_1:70273626-70273645 | None:intergenic | 55.0% | |
| CATTGAAGGAAACCCGCCGT+CGG | - | chr3_1:70273651-70273670 | None:intergenic | 55.0% | |
| GTAGTTCGGTCGGTGAGCTA+AGG | - | chr3_1:70274325-70274344 | None:intergenic | 55.0% | |
| GCTCACCGACCGAACTACTT+AGG | + | chr3_1:70274327-70274346 | Msa0371980:intron | 55.0% | |
| !!! | GATGGAGGGTTTTAGAGGGG+AGG | + | chr3_1:70274582-70274601 | Msa0371980:intron | 55.0% |
| GCAACTGCTGCATGGGTTCT+TGG | + | chr3_1:70275085-70275104 | Msa0371980:CDS | 55.0% | |
| ! | GGATACTAGGGGAGAGTGCA+GGG | - | chr3_1:70275341-70275360 | None:intergenic | 55.0% |
| ! | AGGATACTAGGGGAGAGTGC+AGG | - | chr3_1:70275342-70275361 | None:intergenic | 55.0% |
| GTACACCGAGTTCCAAGACC+TGG | - | chr3_1:70275629-70275648 | None:intergenic | 55.0% | |
| GCCACTCTTTCCGACTCCGA+CGG | + | chr3_1:70273632-70273651 | Msa0371980:CDS | 60.0% | |
| ACTCTTTCCGACTCCGACGG+CGG | + | chr3_1:70273635-70273654 | Msa0371980:CDS | 60.0% | |
| ! | CGACGGCGGGTTTCCTTCAA+TGG | + | chr3_1:70273649-70273668 | Msa0371980:CDS | 60.0% |
| GAGCTAAGGGACACGGAAGG+AGG | - | chr3_1:70274311-70274330 | None:intergenic | 60.0% | |
| GGTGAGCTAAGGGACACGGA+AGG | - | chr3_1:70274314-70274333 | None:intergenic | 60.0% | |
| GGTCGGTGAGCTAAGGGACA+CGG | - | chr3_1:70274318-70274337 | None:intergenic | 60.0% | |
| GCCGTCGGAGTCGGAAAGAG+TGG | - | chr3_1:70273636-70273655 | None:intergenic | 65.0% | |
| CTCTTTCCGACTCCGACGGC+GGG | + | chr3_1:70273636-70273655 | Msa0371980:CDS | 65.0% | |
| AGGAAACCCGCCGTCGGAGT+CGG | - | chr3_1:70273645-70273664 | None:intergenic | 65.0% | |
| GGGACACGGAAGGAGGTCCT+AGG | - | chr3_1:70274304-70274323 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70273390 | 70277021 | 70273390 | ID=Msa0371980;Name=Msa0371980 |
| chr3_1 | mRNA | 70273390 | 70277021 | 70273390 | ID=Msa0371980-mRNA-1;Parent=Msa0371980;Name=Msa0371980-mRNA-1;_AED=0.17;_eAED=0.17;_QI=107|1|1|1|1|1|7|236|375 |
| chr3_1 | exon | 70273390 | 70273695 | 70273390 | ID=Msa0371980-mRNA-1:exon:15205;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70273777 | 70273868 | 70273777 | ID=Msa0371980-mRNA-1:exon:15206;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70273967 | 70274117 | 70273967 | ID=Msa0371980-mRNA-1:exon:15207;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70275017 | 70275144 | 70275017 | ID=Msa0371980-mRNA-1:exon:15208;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70275630 | 70275788 | 70275630 | ID=Msa0371980-mRNA-1:exon:15209;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70275898 | 70276083 | 70275898 | ID=Msa0371980-mRNA-1:exon:15210;Parent=Msa0371980-mRNA-1 |
| chr3_1 | exon | 70276573 | 70277021 | 70276573 | ID=Msa0371980-mRNA-1:exon:15211;Parent=Msa0371980-mRNA-1 |
| chr3_1 | five_prime_UTR | 70273390 | 70273496 | 70273390 | ID=Msa0371980-mRNA-1:five_prime_utr;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70273497 | 70273695 | 70273497 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70273777 | 70273868 | 70273777 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70273967 | 70274117 | 70273967 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70275017 | 70275144 | 70275017 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70275630 | 70275788 | 70275630 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70275898 | 70276083 | 70275898 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | CDS | 70276573 | 70276785 | 70276573 | ID=Msa0371980-mRNA-1:cds;Parent=Msa0371980-mRNA-1 |
| chr3_1 | three_prime_UTR | 70276786 | 70277021 | 70276786 | ID=Msa0371980-mRNA-1:three_prime_utr;Parent=Msa0371980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
