Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145770 | XP_039684103.1 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 3.31e-85 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145770 | sp|Q2HIJ8|RHB1A_ARATH | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.73e-40 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145770 | A0A396H731 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 1.58e-85 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1067110 | Msa1145770 | 0.929906 | 3.541805e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145770 | MtrunA17_Chr7g0248061 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 3.04e-89 | 257 |
| Msa1145770 | MtrunA17_Chr8g0348651 | 60.690 | 145 | 50 | 1 | 1 | 138 | 1 | 145 | 4.60e-54 | 168 |
| Msa1145770 | MtrunA17_Chr8g0387191 | 30.435 | 161 | 89 | 4 | 1 | 138 | 1 | 161 | 4.96e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145770 | AT4G00335.2 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1145770 | AT4G00335.1 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1145770 | AT4G00335.3 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1145770 | AT5G41350.1 | 31.765 | 170 | 80 | 8 | 1 | 138 | 1 | 166 | 1.73e-12 | 62.4 |
| Msa1145770 | AT5G41350.3 | 31.765 | 170 | 80 | 8 | 1 | 138 | 1 | 166 | 1.73e-12 | 62.4 |
| Msa1145770 | AT5G41350.2 | 31.765 | 170 | 80 | 8 | 1 | 138 | 26 | 191 | 2.23e-12 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATCTCTGCTGGATTTC+TGG | 0.071724 | 7_4:+22675156 | Msa1145770:CDS |
| TGTTGGTTTGTTGTGGAATT+TGG | 0.239400 | 7_4:-22673662 | None:intergenic |
| CTTGAAGGTGGCTATGGTTA+TGG | 0.358080 | 7_4:-22673636 | None:intergenic |
| ACTGTACCTTCGAGGCAAAT+AGG | 0.360597 | 7_4:-22675457 | None:intergenic |
| TCTTTGCAAGACTCGGAATC+AGG | 0.371530 | 7_4:-22675271 | None:intergenic |
| CGAAGCAGTGGTAGCGTCAT+TGG | 0.377536 | 7_4:-22675137 | None:intergenic |
| TTTGATAGTTCTACCTTCCT+TGG | 0.379960 | 7_4:-22675388 | None:intergenic |
| GGAGGAGACCGGAATGTATC+AGG | 0.380787 | 7_4:-22675205 | None:intergenic |
| CTACTAACATAGTAATAAAC+TGG | 0.386112 | 7_4:-22674589 | None:intergenic |
| CTTCCTTATGACACTGTCTT+CGG | 0.402519 | 7_4:+22675235 | Msa1145770:CDS |
| ATCTCTGCTGGATTTCTGGT+TGG | 0.413962 | 7_4:+22675160 | Msa1145770:CDS |
| TATCAGGTATGGATGCTTCC+AGG | 0.417514 | 7_4:-22675189 | None:intergenic |
| CTGTACCTTCGAGGCAAATA+GGG | 0.426908 | 7_4:-22675456 | None:intergenic |
| ATTTCTGGTTGGCTTGAACC+TGG | 0.430575 | 7_4:+22675171 | Msa1145770:CDS |
| AATATCATCGTGTGTTATTG+AGG | 0.438311 | 7_4:-22675320 | None:intergenic |
| AGAGGAAGGTGGGAAATTGT+TGG | 0.445516 | 7_4:-22673679 | None:intergenic |
| ACCACTGCTTCGATCTCTGC+TGG | 0.451923 | 7_4:+22675148 | Msa1145770:CDS |
| GAAGAGATGAAGAGGAAGGT+GGG | 0.454390 | 7_4:-22673689 | None:intergenic |
| TGTGGAATTTGGTTGCTTGA+AGG | 0.457350 | 7_4:-22673651 | None:intergenic |
| AGAAGAGATGAAGAGGAAGG+TGG | 0.476111 | 7_4:-22673690 | None:intergenic |
| GGGAAATTGTTGGTTTGTTG+TGG | 0.493103 | 7_4:-22673669 | None:intergenic |
| GTAGAACTATCAAAATCAAA+TGG | 0.495198 | 7_4:+22675397 | Msa1145770:CDS |
| GTGTCATAAGGAAGAGGCAC+AGG | 0.502780 | 7_4:-22675226 | None:intergenic |
| CATCCATACCTGATACATTC+CGG | 0.503588 | 7_4:+22675197 | Msa1145770:CDS |
| CACAAGCAACTGTACCTTCG+AGG | 0.509741 | 7_4:-22675465 | None:intergenic |
| CCTCCGAAGACAGTGTCATA+AGG | 0.517025 | 7_4:-22675238 | None:intergenic |
| TGGTTGCTTGAAGGTGGCTA+TGG | 0.524735 | 7_4:-22673642 | None:intergenic |
| TGCTGCCCTATTTGCCTCGA+AGG | 0.526587 | 7_4:+22675451 | Msa1145770:CDS |
| AGACCGGAATGTATCAGGTA+TGG | 0.527716 | 7_4:-22675200 | None:intergenic |
| AGTATTTGCAACAGAAGAAG+AGG | 0.529174 | 7_4:+22675426 | Msa1145770:CDS |
| AAGCAAAAGAAGAGATGAAG+AGG | 0.545585 | 7_4:-22673697 | None:intergenic |
| GAAGAGGCACAGGAGGAGAC+CGG | 0.549690 | 7_4:-22675216 | None:intergenic |
| AAAAGAAGAGATGAAGAGGA+AGG | 0.557975 | 7_4:-22673693 | None:intergenic |
| TCCAGCAGAGATCGAAGCAG+TGG | 0.566172 | 7_4:-22675149 | None:intergenic |
| GCCAGAAAACATCATTTGCA+AGG | 0.567191 | 7_4:+22674562 | Msa1145770:CDS |
| GGAATTTGGTTGCTTGAAGG+TGG | 0.578772 | 7_4:-22673648 | None:intergenic |
| TGCATCTTTATCTCCAAGGA+AGG | 0.579543 | 7_4:+22675375 | Msa1145770:CDS |
| TTAGGCTTGTGATAGCAGAA+TGG | 0.580305 | 7_4:+22674456 | Msa1145770:intron |
| CCTTATGACACTGTCTTCGG+AGG | 0.580401 | 7_4:+22675238 | Msa1145770:CDS |
| AATCTGCATCTTTATCTCCA+AGG | 0.582568 | 7_4:+22675371 | Msa1145770:CDS |
| TCATAAGGAAGAGGCACAGG+AGG | 0.585245 | 7_4:-22675223 | None:intergenic |
| AAGACAGTGTCATAAGGAAG+AGG | 0.585295 | 7_4:-22675232 | None:intergenic |
| AGCAGTGGTAGCGTCATTGG+AGG | 0.588345 | 7_4:-22675134 | None:intergenic |
| GAAAGAAAGATACATAGTCA+TGG | 0.607278 | 7_4:+22673613 | None:intergenic |
| AAGAACTTCTGGAAAATGGG+AGG | 0.645337 | 7_4:+22674526 | Msa1145770:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTTTGTAAAATTTTTG+TGG | + | chr7_4:22674036-22674055 | Msa1145770:intron | 15.0% |
| !! | AAAATTGAAAATTACGTTTA+AGG | + | chr7_4:22674122-22674141 | Msa1145770:intron | 15.0% |
| !!! | TAATCATCAATGTTATTTTT+AGG | + | chr7_4:22674438-22674457 | Msa1145770:intron | 15.0% |
| !!! | TTGTTTTAGATTATAGTTTA+AGG | + | chr7_4:22674801-22674820 | Msa1145770:intron | 15.0% |
| !!! | TTATGTTTGTAAAATTTTTG+TGG | + | chr7_4:22674036-22674055 | Msa1145770:intron | 15.0% |
| !! | AAAATTGAAAATTACGTTTA+AGG | + | chr7_4:22674122-22674141 | Msa1145770:intron | 15.0% |
| !!! | TAATCATCAATGTTATTTTT+AGG | + | chr7_4:22674438-22674457 | Msa1145770:intron | 15.0% |
| !!! | TTGTTTTAGATTATAGTTTA+AGG | + | chr7_4:22674801-22674820 | Msa1145770:intron | 15.0% |
| !! | ACATAAAAAACTTACCTTTA+TGG | - | chr7_4:22673723-22673742 | None:intergenic | 20.0% |
| !! | TTATAATCACATGTATGTAT+CGG | + | chr7_4:22674244-22674263 | Msa1145770:intron | 20.0% |
| !! | ATACAAAGTATACAATTAGA+GGG | - | chr7_4:22674332-22674351 | None:intergenic | 20.0% |
| !! | AATACAAAGTATACAATTAG+AGG | - | chr7_4:22674333-22674352 | None:intergenic | 20.0% |
| !! | ATAGTTTAAGGATTATTGTT+TGG | + | chr7_4:22674813-22674832 | Msa1145770:intron | 20.0% |
| !!! | AATATTTTCATAAGTTGACT+TGG | - | chr7_4:22674904-22674923 | None:intergenic | 20.0% |
| !! | TCACATAAATACTTATGTAT+AGG | - | chr7_4:22674982-22675001 | None:intergenic | 20.0% |
| !! | ACATAAAAAACTTACCTTTA+TGG | - | chr7_4:22673723-22673742 | None:intergenic | 20.0% |
| !! | TTATAATCACATGTATGTAT+CGG | + | chr7_4:22674244-22674263 | Msa1145770:intron | 20.0% |
| !! | ATACAAAGTATACAATTAGA+GGG | - | chr7_4:22674332-22674351 | None:intergenic | 20.0% |
| !! | AATACAAAGTATACAATTAG+AGG | - | chr7_4:22674333-22674352 | None:intergenic | 20.0% |
| !! | ATAGTTTAAGGATTATTGTT+TGG | + | chr7_4:22674813-22674832 | Msa1145770:intron | 20.0% |
| !!! | AATATTTTCATAAGTTGACT+TGG | - | chr7_4:22674904-22674923 | None:intergenic | 20.0% |
| !! | TCACATAAATACTTATGTAT+AGG | - | chr7_4:22674982-22675001 | None:intergenic | 20.0% |
| !! | GAATTTGATTGTGTTTGTTT+TGG | + | chr7_4:22673830-22673849 | Msa1145770:intron | 25.0% |
| !!! | TTTGTATGTTGTTTGTTTTG+TGG | + | chr7_4:22674007-22674026 | Msa1145770:intron | 25.0% |
| ! | AATTCTTGTAACATGTAACT+AGG | + | chr7_4:22674075-22674094 | Msa1145770:intron | 25.0% |
| ! | AAAAGTTACAATGACATGAA+AGG | - | chr7_4:22674377-22674396 | None:intergenic | 25.0% |
| ! | TAAGTAACAAAAAGAACTTC+TGG | + | chr7_4:22674515-22674534 | Msa1145770:five_prime_UTR | 25.0% |
| !! | AAAAAGAACTTCTGGAAAAT+GGG | + | chr7_4:22674523-22674542 | Msa1145770:exon | 25.0% |
| ! | CTACTAACATAGTAATAAAC+TGG | - | chr7_4:22674592-22674611 | None:intergenic | 25.0% |
| ! | AATGTTGGAGATGAAAATAA+TGG | - | chr7_4:22674657-22674676 | None:intergenic | 25.0% |
| !! | TTATTGTTTGGTAGAACTTT+TGG | + | chr7_4:22674825-22674844 | Msa1145770:intron | 25.0% |
| !!! | ATAGGCTATTTCTATAACAA+AGG | - | chr7_4:22674964-22674983 | None:intergenic | 25.0% |
| ! | GTAGAACTATCAAAATCAAA+TGG | + | chr7_4:22675397-22675416 | Msa1145770:CDS | 25.0% |
| !! | GAATTTGATTGTGTTTGTTT+TGG | + | chr7_4:22673830-22673849 | Msa1145770:intron | 25.0% |
| !!! | TTTGTATGTTGTTTGTTTTG+TGG | + | chr7_4:22674007-22674026 | Msa1145770:intron | 25.0% |
| ! | AATTCTTGTAACATGTAACT+AGG | + | chr7_4:22674075-22674094 | Msa1145770:intron | 25.0% |
| ! | AAAAGTTACAATGACATGAA+AGG | - | chr7_4:22674377-22674396 | None:intergenic | 25.0% |
| ! | TAAGTAACAAAAAGAACTTC+TGG | + | chr7_4:22674515-22674534 | Msa1145770:five_prime_UTR | 25.0% |
| !! | AAAAAGAACTTCTGGAAAAT+GGG | + | chr7_4:22674523-22674542 | Msa1145770:exon | 25.0% |
| ! | CTACTAACATAGTAATAAAC+TGG | - | chr7_4:22674592-22674611 | None:intergenic | 25.0% |
| ! | AATGTTGGAGATGAAAATAA+TGG | - | chr7_4:22674657-22674676 | None:intergenic | 25.0% |
| !! | TTATTGTTTGGTAGAACTTT+TGG | + | chr7_4:22674825-22674844 | Msa1145770:intron | 25.0% |
| !!! | ATAGGCTATTTCTATAACAA+AGG | - | chr7_4:22674964-22674983 | None:intergenic | 25.0% |
| ! | GTAGAACTATCAAAATCAAA+TGG | + | chr7_4:22675397-22675416 | Msa1145770:CDS | 25.0% |
| !! | CTTAGTTTTCTCAGTTTTCA+TGG | + | chr7_4:22673751-22673770 | Msa1145770:intron | 30.0% |
| !! | CTTTTGAGAGAACAAGAATT+GGG | - | chr7_4:22673864-22673883 | None:intergenic | 30.0% |
| CAATTCTTGTTCTCTCAAAA+GGG | + | chr7_4:22673863-22673882 | Msa1145770:intron | 30.0% | |
| !!! | GGTTGTTGTTTTTTGTTGTT+GGG | + | chr7_4:22673884-22673903 | Msa1145770:intron | 30.0% |
| !!! | GTTGTTGTTTTTTGTTGTTG+GGG | + | chr7_4:22673885-22673904 | Msa1145770:intron | 30.0% |
| TACAAGACAAAACAAAACAG+AGG | - | chr7_4:22673931-22673950 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTTGTCTTGTAG+TGG | + | chr7_4:22673932-22673951 | Msa1145770:intron | 30.0% |
| !!! | ATGTTGTTTGTTTTGTGGAT+TGG | + | chr7_4:22674012-22674031 | Msa1145770:intron | 30.0% |
| ATCTATTAGCTATGTGTCTT+TGG | + | chr7_4:22674172-22674191 | Msa1145770:intron | 30.0% | |
| AAAAAAGAATGAAACTGTCG+AGG | + | chr7_4:22674481-22674500 | Msa1145770:five_prime_UTR | 30.0% | |
| ! | CAAAAAGAACTTCTGGAAAA+TGG | + | chr7_4:22674522-22674541 | Msa1145770:exon | 30.0% |
| AATAAAAAGGTGACGAATGT+TGG | - | chr7_4:22674672-22674691 | None:intergenic | 30.0% | |
| ! | GTACTTCTGAAAGAATAATC+TGG | + | chr7_4:22674762-22674781 | Msa1145770:intron | 30.0% |
| ! | AATATCATCGTGTGTTATTG+AGG | - | chr7_4:22675323-22675342 | None:intergenic | 30.0% |
| !! | CTTAGTTTTCTCAGTTTTCA+TGG | + | chr7_4:22673751-22673770 | Msa1145770:intron | 30.0% |
| !! | CTTTTGAGAGAACAAGAATT+GGG | - | chr7_4:22673864-22673883 | None:intergenic | 30.0% |
| CAATTCTTGTTCTCTCAAAA+GGG | + | chr7_4:22673863-22673882 | Msa1145770:intron | 30.0% | |
| !!! | GGTTGTTGTTTTTTGTTGTT+GGG | + | chr7_4:22673884-22673903 | Msa1145770:intron | 30.0% |
| !!! | GTTGTTGTTTTTTGTTGTTG+GGG | + | chr7_4:22673885-22673904 | Msa1145770:intron | 30.0% |
| TACAAGACAAAACAAAACAG+AGG | - | chr7_4:22673931-22673950 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTTGTCTTGTAG+TGG | + | chr7_4:22673932-22673951 | Msa1145770:intron | 30.0% |
| !!! | ATGTTGTTTGTTTTGTGGAT+TGG | + | chr7_4:22674012-22674031 | Msa1145770:intron | 30.0% |
| ATCTATTAGCTATGTGTCTT+TGG | + | chr7_4:22674172-22674191 | Msa1145770:intron | 30.0% | |
| AAAAAAGAATGAAACTGTCG+AGG | + | chr7_4:22674481-22674500 | Msa1145770:five_prime_UTR | 30.0% | |
| ! | CAAAAAGAACTTCTGGAAAA+TGG | + | chr7_4:22674522-22674541 | Msa1145770:exon | 30.0% |
| AATAAAAAGGTGACGAATGT+TGG | - | chr7_4:22674672-22674691 | None:intergenic | 30.0% | |
| ! | GTACTTCTGAAAGAATAATC+TGG | + | chr7_4:22674762-22674781 | Msa1145770:intron | 30.0% |
| ! | AATATCATCGTGTGTTATTG+AGG | - | chr7_4:22675323-22675342 | None:intergenic | 30.0% |
| !! | TGTTGGTTTGTTGTGGAATT+TGG | - | chr7_4:22673665-22673684 | None:intergenic | 35.0% |
| AAAAGAAGAGATGAAGAGGA+AGG | - | chr7_4:22673696-22673715 | None:intergenic | 35.0% | |
| AAGCAAAAGAAGAGATGAAG+AGG | - | chr7_4:22673700-22673719 | None:intergenic | 35.0% | |
| ! | CTCTTCTTTTGCTTCCATAA+AGG | + | chr7_4:22673706-22673725 | Msa1145770:five_prime_UTR | 35.0% |
| !!! | TGTTTTTTGGCCACTCTTTT+GGG | + | chr7_4:22673796-22673815 | Msa1145770:intron | 35.0% |
| !! | CCTTTTGAGAGAACAAGAAT+TGG | - | chr7_4:22673865-22673884 | None:intergenic | 35.0% |
| CCAATTCTTGTTCTCTCAAA+AGG | + | chr7_4:22673862-22673881 | Msa1145770:intron | 35.0% | |
| !!! | GGGTTGTTGTTTTTTGTTGT+TGG | + | chr7_4:22673883-22673902 | Msa1145770:intron | 35.0% |
| !!! | TTTTGTTGTTGGGGTGTTTT+TGG | + | chr7_4:22673894-22673913 | Msa1145770:intron | 35.0% |
| ! | ACACCTTTAATCTGAAGTGT+CGG | + | chr7_4:22674282-22674301 | Msa1145770:intron | 35.0% |
| ! | TCCTTGCAAATGATGTTTTC+TGG | - | chr7_4:22674566-22674585 | None:intergenic | 35.0% |
| AAGAGAACAGCGAAAACAAA+TGG | - | chr7_4:22674733-22674752 | None:intergenic | 35.0% | |
| TCTGAAAGAATAATCTGGTC+TGG | + | chr7_4:22674767-22674786 | Msa1145770:intron | 35.0% | |
| ! | ACACGTCTAGAAGATGTTTT+CGG | + | chr7_4:22674860-22674879 | Msa1145770:intron | 35.0% |
| CTTGGAGAGCTAATAGAAAT+AGG | - | chr7_4:22674886-22674905 | None:intergenic | 35.0% | |
| ! | GACATTTTCTTTGCAAGACT+CGG | - | chr7_4:22675281-22675300 | None:intergenic | 35.0% |
| AATCTGCATCTTTATCTCCA+AGG | + | chr7_4:22675371-22675390 | Msa1145770:CDS | 35.0% | |
| ! | TTTGATAGTTCTACCTTCCT+TGG | - | chr7_4:22675391-22675410 | None:intergenic | 35.0% |
| AGTATTTGCAACAGAAGAAG+AGG | + | chr7_4:22675426-22675445 | Msa1145770:CDS | 35.0% | |
| !! | TGTTGGTTTGTTGTGGAATT+TGG | - | chr7_4:22673665-22673684 | None:intergenic | 35.0% |
| AAAAGAAGAGATGAAGAGGA+AGG | - | chr7_4:22673696-22673715 | None:intergenic | 35.0% | |
| AAGCAAAAGAAGAGATGAAG+AGG | - | chr7_4:22673700-22673719 | None:intergenic | 35.0% | |
| ! | CTCTTCTTTTGCTTCCATAA+AGG | + | chr7_4:22673706-22673725 | Msa1145770:five_prime_UTR | 35.0% |
| !!! | TGTTTTTTGGCCACTCTTTT+GGG | + | chr7_4:22673796-22673815 | Msa1145770:intron | 35.0% |
| !! | CCTTTTGAGAGAACAAGAAT+TGG | - | chr7_4:22673865-22673884 | None:intergenic | 35.0% |
| CCAATTCTTGTTCTCTCAAA+AGG | + | chr7_4:22673862-22673881 | Msa1145770:intron | 35.0% | |
| !!! | GGGTTGTTGTTTTTTGTTGT+TGG | + | chr7_4:22673883-22673902 | Msa1145770:intron | 35.0% |
| !!! | TTTTGTTGTTGGGGTGTTTT+TGG | + | chr7_4:22673894-22673913 | Msa1145770:intron | 35.0% |
| ! | ACACCTTTAATCTGAAGTGT+CGG | + | chr7_4:22674282-22674301 | Msa1145770:intron | 35.0% |
| ! | TCCTTGCAAATGATGTTTTC+TGG | - | chr7_4:22674566-22674585 | None:intergenic | 35.0% |
| AAGAGAACAGCGAAAACAAA+TGG | - | chr7_4:22674733-22674752 | None:intergenic | 35.0% | |
| TCTGAAAGAATAATCTGGTC+TGG | + | chr7_4:22674767-22674786 | Msa1145770:intron | 35.0% | |
| ! | ACACGTCTAGAAGATGTTTT+CGG | + | chr7_4:22674860-22674879 | Msa1145770:intron | 35.0% |
| CTTGGAGAGCTAATAGAAAT+AGG | - | chr7_4:22674886-22674905 | None:intergenic | 35.0% | |
| ! | GACATTTTCTTTGCAAGACT+CGG | - | chr7_4:22675281-22675300 | None:intergenic | 35.0% |
| AATCTGCATCTTTATCTCCA+AGG | + | chr7_4:22675371-22675390 | Msa1145770:CDS | 35.0% | |
| ! | TTTGATAGTTCTACCTTCCT+TGG | - | chr7_4:22675391-22675410 | None:intergenic | 35.0% |
| AGTATTTGCAACAGAAGAAG+AGG | + | chr7_4:22675426-22675445 | Msa1145770:CDS | 35.0% | |
| TGTGGAATTTGGTTGCTTGA+AGG | - | chr7_4:22673654-22673673 | None:intergenic | 40.0% | |
| !! | GGGAAATTGTTGGTTTGTTG+TGG | - | chr7_4:22673672-22673691 | None:intergenic | 40.0% |
| !!! | GTTCACCAACTCGTGTTTTT+TGG | + | chr7_4:22673783-22673802 | Msa1145770:intron | 40.0% |
| !!! | GTGTTTTTTGGCCACTCTTT+TGG | + | chr7_4:22673795-22673814 | Msa1145770:intron | 40.0% |
| TAGCACAAAACCCAAAAGAG+TGG | - | chr7_4:22673809-22673828 | None:intergenic | 40.0% | |
| TTGTCTTGTAGTGGTCAGTT+AGG | + | chr7_4:22673941-22673960 | Msa1145770:intron | 40.0% | |
| TGTCTTGTAGTGGTCAGTTA+GGG | + | chr7_4:22673942-22673961 | Msa1145770:intron | 40.0% | |
| TTAGGCTTGTGATAGCAGAA+TGG | + | chr7_4:22674456-22674475 | Msa1145770:intron | 40.0% | |
| ! | AAGAACTTCTGGAAAATGGG+AGG | + | chr7_4:22674526-22674545 | Msa1145770:exon | 40.0% |
| GCCAGAAAACATCATTTGCA+AGG | + | chr7_4:22674562-22674581 | Msa1145770:CDS | 40.0% | |
| GCATTAGCAATGATTGTGTG+AGG | + | chr7_4:22674705-22674724 | Msa1145770:intron | 40.0% | |
| CATCCATACCTGATACATTC+CGG | + | chr7_4:22675197-22675216 | Msa1145770:CDS | 40.0% | |
| AAGACAGTGTCATAAGGAAG+AGG | - | chr7_4:22675235-22675254 | None:intergenic | 40.0% | |
| CTTCCTTATGACACTGTCTT+CGG | + | chr7_4:22675235-22675254 | Msa1145770:CDS | 40.0% | |
| TGCATCTTTATCTCCAAGGA+AGG | + | chr7_4:22675375-22675394 | Msa1145770:CDS | 40.0% | |
| TGTGGAATTTGGTTGCTTGA+AGG | - | chr7_4:22673654-22673673 | None:intergenic | 40.0% | |
| !! | GGGAAATTGTTGGTTTGTTG+TGG | - | chr7_4:22673672-22673691 | None:intergenic | 40.0% |
| !!! | GTTCACCAACTCGTGTTTTT+TGG | + | chr7_4:22673783-22673802 | Msa1145770:intron | 40.0% |
| !!! | GTGTTTTTTGGCCACTCTTT+TGG | + | chr7_4:22673795-22673814 | Msa1145770:intron | 40.0% |
| TAGCACAAAACCCAAAAGAG+TGG | - | chr7_4:22673809-22673828 | None:intergenic | 40.0% | |
| TTGTCTTGTAGTGGTCAGTT+AGG | + | chr7_4:22673941-22673960 | Msa1145770:intron | 40.0% | |
| TGTCTTGTAGTGGTCAGTTA+GGG | + | chr7_4:22673942-22673961 | Msa1145770:intron | 40.0% | |
| TTAGGCTTGTGATAGCAGAA+TGG | + | chr7_4:22674456-22674475 | Msa1145770:intron | 40.0% | |
| ! | AAGAACTTCTGGAAAATGGG+AGG | + | chr7_4:22674526-22674545 | Msa1145770:exon | 40.0% |
| GCCAGAAAACATCATTTGCA+AGG | + | chr7_4:22674562-22674581 | Msa1145770:CDS | 40.0% | |
| GCATTAGCAATGATTGTGTG+AGG | + | chr7_4:22674705-22674724 | Msa1145770:intron | 40.0% | |
| CATCCATACCTGATACATTC+CGG | + | chr7_4:22675197-22675216 | Msa1145770:CDS | 40.0% | |
| AAGACAGTGTCATAAGGAAG+AGG | - | chr7_4:22675235-22675254 | None:intergenic | 40.0% | |
| CTTCCTTATGACACTGTCTT+CGG | + | chr7_4:22675235-22675254 | Msa1145770:CDS | 40.0% | |
| TGCATCTTTATCTCCAAGGA+AGG | + | chr7_4:22675375-22675394 | Msa1145770:CDS | 40.0% | |
| CTTGAAGGTGGCTATGGTTA+TGG | - | chr7_4:22673639-22673658 | None:intergenic | 45.0% | |
| GGAATTTGGTTGCTTGAAGG+TGG | - | chr7_4:22673651-22673670 | None:intergenic | 45.0% | |
| AGAGGAAGGTGGGAAATTGT+TGG | - | chr7_4:22673682-22673701 | None:intergenic | 45.0% | |
| GAAGAGATGAAGAGGAAGGT+GGG | - | chr7_4:22673692-22673711 | None:intergenic | 45.0% | |
| AGAAGAGATGAAGAGGAAGG+TGG | - | chr7_4:22673693-22673712 | None:intergenic | 45.0% | |
| AGTGGCCAAAAAACACGAGT+TGG | - | chr7_4:22673791-22673810 | None:intergenic | 45.0% | |
| GAGAGAACAAGAATTGGGTG+AGG | - | chr7_4:22673859-22673878 | None:intergenic | 45.0% | |
| ! | CACATGTATGTATCGGTGTC+AGG | + | chr7_4:22674251-22674270 | Msa1145770:intron | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | - | chr7_4:22674288-22674307 | None:intergenic | 45.0% |
| !! | AATCTGAAGTGTCGGTGCAT+TGG | + | chr7_4:22674290-22674309 | Msa1145770:intron | 45.0% |
| ! | AAGTTGGCGGGCACTAAAAA+CGG | - | chr7_4:22675093-22675112 | None:intergenic | 45.0% |
| TTCGATCTCTGCTGGATTTC+TGG | + | chr7_4:22675156-22675175 | Msa1145770:CDS | 45.0% | |
| !! | ATCTCTGCTGGATTTCTGGT+TGG | + | chr7_4:22675160-22675179 | Msa1145770:CDS | 45.0% |
| !! | ATTTCTGGTTGGCTTGAACC+TGG | + | chr7_4:22675171-22675190 | Msa1145770:CDS | 45.0% |
| TATCAGGTATGGATGCTTCC+AGG | - | chr7_4:22675192-22675211 | None:intergenic | 45.0% | |
| AGACCGGAATGTATCAGGTA+TGG | - | chr7_4:22675203-22675222 | None:intergenic | 45.0% | |
| TCTTTGCAAGACTCGGAATC+AGG | - | chr7_4:22675274-22675293 | None:intergenic | 45.0% | |
| CTGTACCTTCGAGGCAAATA+GGG | - | chr7_4:22675459-22675478 | None:intergenic | 45.0% | |
| ACTGTACCTTCGAGGCAAAT+AGG | - | chr7_4:22675460-22675479 | None:intergenic | 45.0% | |
| CTTGAAGGTGGCTATGGTTA+TGG | - | chr7_4:22673639-22673658 | None:intergenic | 45.0% | |
| GGAATTTGGTTGCTTGAAGG+TGG | - | chr7_4:22673651-22673670 | None:intergenic | 45.0% | |
| AGAGGAAGGTGGGAAATTGT+TGG | - | chr7_4:22673682-22673701 | None:intergenic | 45.0% | |
| GAAGAGATGAAGAGGAAGGT+GGG | - | chr7_4:22673692-22673711 | None:intergenic | 45.0% | |
| AGAAGAGATGAAGAGGAAGG+TGG | - | chr7_4:22673693-22673712 | None:intergenic | 45.0% | |
| AGTGGCCAAAAAACACGAGT+TGG | - | chr7_4:22673791-22673810 | None:intergenic | 45.0% | |
| GAGAGAACAAGAATTGGGTG+AGG | - | chr7_4:22673859-22673878 | None:intergenic | 45.0% | |
| ! | CACATGTATGTATCGGTGTC+AGG | + | chr7_4:22674251-22674270 | Msa1145770:intron | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | - | chr7_4:22674288-22674307 | None:intergenic | 45.0% |
| !! | AATCTGAAGTGTCGGTGCAT+TGG | + | chr7_4:22674290-22674309 | Msa1145770:intron | 45.0% |
| ! | AAGTTGGCGGGCACTAAAAA+CGG | - | chr7_4:22675093-22675112 | None:intergenic | 45.0% |
| TTCGATCTCTGCTGGATTTC+TGG | + | chr7_4:22675156-22675175 | Msa1145770:CDS | 45.0% | |
| !! | ATCTCTGCTGGATTTCTGGT+TGG | + | chr7_4:22675160-22675179 | Msa1145770:CDS | 45.0% |
| !! | ATTTCTGGTTGGCTTGAACC+TGG | + | chr7_4:22675171-22675190 | Msa1145770:CDS | 45.0% |
| TATCAGGTATGGATGCTTCC+AGG | - | chr7_4:22675192-22675211 | None:intergenic | 45.0% | |
| AGACCGGAATGTATCAGGTA+TGG | - | chr7_4:22675203-22675222 | None:intergenic | 45.0% | |
| TCTTTGCAAGACTCGGAATC+AGG | - | chr7_4:22675274-22675293 | None:intergenic | 45.0% | |
| CTGTACCTTCGAGGCAAATA+GGG | - | chr7_4:22675459-22675478 | None:intergenic | 45.0% | |
| ACTGTACCTTCGAGGCAAAT+AGG | - | chr7_4:22675460-22675479 | None:intergenic | 45.0% | |
| !! | TAATGATTAAAATAATAAAA+AGG | - | chr7_4:22674685-22674704 | None:intergenic | 5.0% |
| !! | TAATGATTAAAATAATAAAA+AGG | - | chr7_4:22674685-22674704 | None:intergenic | 5.0% |
| TGGTTGCTTGAAGGTGGCTA+TGG | - | chr7_4:22673645-22673664 | None:intergenic | 50.0% | |
| CTTGTAGTGGTCAGTTAGGG+TGG | + | chr7_4:22673945-22673964 | Msa1145770:intron | 50.0% | |
| TCCCGCTCTTCAAAAGTTGG+CGG | - | chr7_4:22675106-22675125 | None:intergenic | 50.0% | |
| GACTCCCGCTCTTCAAAAGT+TGG | - | chr7_4:22675109-22675128 | None:intergenic | 50.0% | |
| ! | TCATAAGGAAGAGGCACAGG+AGG | - | chr7_4:22675226-22675245 | None:intergenic | 50.0% |
| ! | GTGTCATAAGGAAGAGGCAC+AGG | - | chr7_4:22675229-22675248 | None:intergenic | 50.0% |
| CCTCCGAAGACAGTGTCATA+AGG | - | chr7_4:22675241-22675260 | None:intergenic | 50.0% | |
| CCTTATGACACTGTCTTCGG+AGG | + | chr7_4:22675238-22675257 | Msa1145770:CDS | 50.0% | |
| CACAAGCAACTGTACCTTCG+AGG | - | chr7_4:22675468-22675487 | None:intergenic | 50.0% | |
| TGGTTGCTTGAAGGTGGCTA+TGG | - | chr7_4:22673645-22673664 | None:intergenic | 50.0% | |
| CTTGTAGTGGTCAGTTAGGG+TGG | + | chr7_4:22673945-22673964 | Msa1145770:intron | 50.0% | |
| TCCCGCTCTTCAAAAGTTGG+CGG | - | chr7_4:22675106-22675125 | None:intergenic | 50.0% | |
| GACTCCCGCTCTTCAAAAGT+TGG | - | chr7_4:22675109-22675128 | None:intergenic | 50.0% | |
| ! | TCATAAGGAAGAGGCACAGG+AGG | - | chr7_4:22675226-22675245 | None:intergenic | 50.0% |
| ! | GTGTCATAAGGAAGAGGCAC+AGG | - | chr7_4:22675229-22675248 | None:intergenic | 50.0% |
| CCTCCGAAGACAGTGTCATA+AGG | - | chr7_4:22675241-22675260 | None:intergenic | 50.0% | |
| CCTTATGACACTGTCTTCGG+AGG | + | chr7_4:22675238-22675257 | Msa1145770:CDS | 50.0% | |
| CACAAGCAACTGTACCTTCG+AGG | - | chr7_4:22675468-22675487 | None:intergenic | 50.0% | |
| !! | GCCCGCCAACTTTTGAAGAG+CGG | + | chr7_4:22675101-22675120 | Msa1145770:intron | 55.0% |
| CCCGCTCTTCAAAAGTTGGC+GGG | - | chr7_4:22675105-22675124 | None:intergenic | 55.0% | |
| !! | CCCGCCAACTTTTGAAGAGC+GGG | + | chr7_4:22675102-22675121 | Msa1145770:intron | 55.0% |
| ! | AGCAGTGGTAGCGTCATTGG+AGG | - | chr7_4:22675137-22675156 | None:intergenic | 55.0% |
| ! | CGAAGCAGTGGTAGCGTCAT+TGG | - | chr7_4:22675140-22675159 | None:intergenic | 55.0% |
| ACCACTGCTTCGATCTCTGC+TGG | + | chr7_4:22675148-22675167 | Msa1145770:CDS | 55.0% | |
| TCCAGCAGAGATCGAAGCAG+TGG | - | chr7_4:22675152-22675171 | None:intergenic | 55.0% | |
| GGAGGAGACCGGAATGTATC+AGG | - | chr7_4:22675208-22675227 | None:intergenic | 55.0% | |
| TGCTGCCCTATTTGCCTCGA+AGG | + | chr7_4:22675451-22675470 | Msa1145770:CDS | 55.0% | |
| !! | GCCCGCCAACTTTTGAAGAG+CGG | + | chr7_4:22675101-22675120 | Msa1145770:intron | 55.0% |
| CCCGCTCTTCAAAAGTTGGC+GGG | - | chr7_4:22675105-22675124 | None:intergenic | 55.0% | |
| !! | CCCGCCAACTTTTGAAGAGC+GGG | + | chr7_4:22675102-22675121 | Msa1145770:intron | 55.0% |
| ! | AGCAGTGGTAGCGTCATTGG+AGG | - | chr7_4:22675137-22675156 | None:intergenic | 55.0% |
| ! | CGAAGCAGTGGTAGCGTCAT+TGG | - | chr7_4:22675140-22675159 | None:intergenic | 55.0% |
| ACCACTGCTTCGATCTCTGC+TGG | + | chr7_4:22675148-22675167 | Msa1145770:CDS | 55.0% | |
| TCCAGCAGAGATCGAAGCAG+TGG | - | chr7_4:22675152-22675171 | None:intergenic | 55.0% | |
| GGAGGAGACCGGAATGTATC+AGG | - | chr7_4:22675208-22675227 | None:intergenic | 55.0% | |
| TGCTGCCCTATTTGCCTCGA+AGG | + | chr7_4:22675451-22675470 | Msa1145770:CDS | 55.0% | |
| ! | GAAGAGGCACAGGAGGAGAC+CGG | - | chr7_4:22675219-22675238 | None:intergenic | 60.0% |
| ! | GAAGAGGCACAGGAGGAGAC+CGG | - | chr7_4:22675219-22675238 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 22673617 | 22675495 | 22673617 | ID=Msa1145770;Name=Msa1145770 |
| chr7_4 | mRNA | 22673617 | 22675495 | 22673617 | ID=Msa1145770-mRNA-1;Parent=Msa1145770;Name=Msa1145770-mRNA-1;_AED=0.25;_eAED=0.25;_QI=192|0.5|0.66|1|0.5|0.66|3|0|145 |
| chr7_4 | exon | 22673617 | 22673727 | 22673617 | ID=Msa1145770-mRNA-1:exon:5624;Parent=Msa1145770-mRNA-1 |
| chr7_4 | exon | 22674460 | 22674603 | 22674460 | ID=Msa1145770-mRNA-1:exon:5625;Parent=Msa1145770-mRNA-1 |
| chr7_4 | exon | 22675121 | 22675495 | 22675121 | ID=Msa1145770-mRNA-1:exon:5626;Parent=Msa1145770-mRNA-1 |
| chr7_4 | five_prime_UTR | 22673617 | 22673727 | 22673617 | ID=Msa1145770-mRNA-1:five_prime_utr;Parent=Msa1145770-mRNA-1 |
| chr7_4 | five_prime_UTR | 22674460 | 22674540 | 22674460 | ID=Msa1145770-mRNA-1:five_prime_utr;Parent=Msa1145770-mRNA-1 |
| chr7_4 | CDS | 22674541 | 22674603 | 22674541 | ID=Msa1145770-mRNA-1:cds;Parent=Msa1145770-mRNA-1 |
| chr7_4 | CDS | 22675121 | 22675495 | 22675121 | ID=Msa1145770-mRNA-1:cds;Parent=Msa1145770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
