Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067110 | XP_039684103.1 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 3.31e-85 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067110 | sp|Q2HIJ8|RHB1A_ARATH | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.73e-40 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067110 | A0A396H731 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 1.58e-85 | 257 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032840 | Msa1067110 | 0.805695 | 1.179157e-49 | -8.615850e-47 |
| Msa0230550 | Msa1067110 | 0.800535 | 1.377237e-48 | -8.615850e-47 |
| Msa1067110 | Msa1145770 | 0.929906 | 3.541805e-93 | -8.615850e-47 |
| Msa1067110 | Msa1193950 | 0.800688 | 1.281603e-48 | -8.615850e-47 |
| Msa1067110 | Msa1269580 | 0.804535 | 2.062071e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067110 | MtrunA17_Chr7g0248061 | 90.345 | 145 | 7 | 1 | 1 | 138 | 1 | 145 | 3.04e-89 | 257 |
| Msa1067110 | MtrunA17_Chr8g0348651 | 60.690 | 145 | 50 | 1 | 1 | 138 | 1 | 145 | 4.60e-54 | 168 |
| Msa1067110 | MtrunA17_Chr8g0387191 | 30.435 | 161 | 89 | 4 | 1 | 138 | 1 | 161 | 4.96e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067110 | AT4G00335.2 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1067110 | AT4G00335.1 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1067110 | AT4G00335.3 | 52.414 | 145 | 61 | 3 | 1 | 138 | 1 | 144 | 4.81e-41 | 135 |
| Msa1067110 | AT5G41350.1 | 31.765 | 170 | 80 | 8 | 1 | 138 | 1 | 166 | 1.73e-12 | 62.4 |
| Msa1067110 | AT5G41350.3 | 31.765 | 170 | 80 | 8 | 1 | 138 | 1 | 166 | 1.73e-12 | 62.4 |
| Msa1067110 | AT5G41350.2 | 31.765 | 170 | 80 | 8 | 1 | 138 | 26 | 191 | 2.23e-12 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATCTCTGCTGGATTTC+TGG | 0.071724 | 7_2:-61371937 | Msa1067110:CDS |
| TGTTGGTTTGTTGTGGAATT+TGG | 0.239400 | 7_2:+61373431 | None:intergenic |
| CTTGAAGGTGGCTATGGTTA+TGG | 0.358080 | 7_2:+61373457 | None:intergenic |
| ACTGTACCTTCGAGGCAAAT+AGG | 0.360597 | 7_2:+61371636 | None:intergenic |
| TCTTTGCAAGACTCGGAATC+AGG | 0.371530 | 7_2:+61371822 | None:intergenic |
| CGAAGCAGTGGTAGCGTCAT+TGG | 0.377536 | 7_2:+61371956 | None:intergenic |
| TTTGATAGTTCTACCTTCCT+TGG | 0.379960 | 7_2:+61371705 | None:intergenic |
| GGAGGAGACCGGAATGTATC+AGG | 0.380787 | 7_2:+61371888 | None:intergenic |
| CTACTAACATAGTAATAAAC+TGG | 0.386112 | 7_2:+61372504 | None:intergenic |
| CTTCCTTATGACACTGTCTT+CGG | 0.402519 | 7_2:-61371858 | Msa1067110:CDS |
| ATCTCTGCTGGATTTCTGGT+TGG | 0.413962 | 7_2:-61371933 | Msa1067110:CDS |
| TATCAGGTATGGATGCTTCC+AGG | 0.417514 | 7_2:+61371904 | None:intergenic |
| CTGTACCTTCGAGGCAAATA+GGG | 0.426908 | 7_2:+61371637 | None:intergenic |
| ATTTCTGGTTGGCTTGAACC+TGG | 0.430575 | 7_2:-61371922 | Msa1067110:CDS |
| AATATCATCGTGTGTTATTG+AGG | 0.438311 | 7_2:+61371773 | None:intergenic |
| AGAGGAAGGTGGGAAATTGT+TGG | 0.445516 | 7_2:+61373414 | None:intergenic |
| ACCACTGCTTCGATCTCTGC+TGG | 0.451923 | 7_2:-61371945 | Msa1067110:CDS |
| GAAGAGATGAAGAGGAAGGT+GGG | 0.454390 | 7_2:+61373404 | None:intergenic |
| TGTGGAATTTGGTTGCTTGA+AGG | 0.457350 | 7_2:+61373442 | None:intergenic |
| AGAAGAGATGAAGAGGAAGG+TGG | 0.476111 | 7_2:+61373403 | None:intergenic |
| GGGAAATTGTTGGTTTGTTG+TGG | 0.493103 | 7_2:+61373424 | None:intergenic |
| GTAGAACTATCAAAATCAAA+TGG | 0.495198 | 7_2:-61371696 | Msa1067110:CDS |
| GTGTCATAAGGAAGAGGCAC+AGG | 0.502780 | 7_2:+61371867 | None:intergenic |
| CATCCATACCTGATACATTC+CGG | 0.503588 | 7_2:-61371896 | Msa1067110:CDS |
| CACAAGCAACTGTACCTTCG+AGG | 0.509741 | 7_2:+61371628 | None:intergenic |
| CCTCCGAAGACAGTGTCATA+AGG | 0.517025 | 7_2:+61371855 | None:intergenic |
| TGGTTGCTTGAAGGTGGCTA+TGG | 0.524735 | 7_2:+61373451 | None:intergenic |
| TGCTGCCCTATTTGCCTCGA+AGG | 0.526587 | 7_2:-61371642 | Msa1067110:CDS |
| AGACCGGAATGTATCAGGTA+TGG | 0.527716 | 7_2:+61371893 | None:intergenic |
| AGTATTTGCAACAGAAGAAG+AGG | 0.529174 | 7_2:-61371667 | Msa1067110:CDS |
| AAGCAAAAGAAGAGATGAAG+AGG | 0.545585 | 7_2:+61373396 | None:intergenic |
| GAAGAGGCACAGGAGGAGAC+CGG | 0.549690 | 7_2:+61371877 | None:intergenic |
| AAAAGAAGAGATGAAGAGGA+AGG | 0.557975 | 7_2:+61373400 | None:intergenic |
| TCCAGCAGAGATCGAAGCAG+TGG | 0.566172 | 7_2:+61371944 | None:intergenic |
| GCCAGAAAACATCATTTGCA+AGG | 0.567191 | 7_2:-61372531 | Msa1067110:CDS |
| GGAATTTGGTTGCTTGAAGG+TGG | 0.578772 | 7_2:+61373445 | None:intergenic |
| TGCATCTTTATCTCCAAGGA+AGG | 0.579543 | 7_2:-61371718 | Msa1067110:CDS |
| TTAGGCTTGTGATAGCAGAA+TGG | 0.580305 | 7_2:-61372637 | Msa1067110:intron |
| CCTTATGACACTGTCTTCGG+AGG | 0.580401 | 7_2:-61371855 | Msa1067110:CDS |
| AATCTGCATCTTTATCTCCA+AGG | 0.582568 | 7_2:-61371722 | Msa1067110:CDS |
| TCATAAGGAAGAGGCACAGG+AGG | 0.585245 | 7_2:+61371870 | None:intergenic |
| AAGACAGTGTCATAAGGAAG+AGG | 0.585295 | 7_2:+61371861 | None:intergenic |
| AGCAGTGGTAGCGTCATTGG+AGG | 0.588345 | 7_2:+61371959 | None:intergenic |
| GAAAGAAAGATACATAGTCA+TGG | 0.607278 | 7_2:-61373480 | None:intergenic |
| AAGAACTTCTGGAAAATGGG+AGG | 0.645337 | 7_2:-61372567 | Msa1067110:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTTTGTAAAATTTTTG+TGG | - | chr7_2:61372039-61372058 | Msa1067110:intron | 15.0% |
| !! | AAAATTGAAAATTACGTTTA+AGG | - | chr7_2:61372125-61372144 | Msa1067110:intron | 15.0% |
| !!! | TAATCATCAATGTTATTTTT+AGG | - | chr7_2:61372441-61372460 | Msa1067110:intron | 15.0% |
| !!! | TTGTTTTAGATTATAGTTTA+AGG | - | chr7_2:61372804-61372823 | Msa1067110:intron | 15.0% |
| !!! | TTATGTTTGTAAAATTTTTG+TGG | - | chr7_2:61372039-61372058 | Msa1067110:intron | 15.0% |
| !! | AAAATTGAAAATTACGTTTA+AGG | - | chr7_2:61372125-61372144 | Msa1067110:intron | 15.0% |
| !!! | TAATCATCAATGTTATTTTT+AGG | - | chr7_2:61372441-61372460 | Msa1067110:intron | 15.0% |
| !!! | TTGTTTTAGATTATAGTTTA+AGG | - | chr7_2:61372804-61372823 | Msa1067110:intron | 15.0% |
| !! | ACATAAAAAACTTACCTTTA+TGG | + | chr7_2:61371726-61371745 | None:intergenic | 20.0% |
| !! | TTATAATCACATGTATGTAT+CGG | - | chr7_2:61372247-61372266 | Msa1067110:intron | 20.0% |
| !! | ATACAAAGTATACAATTAGA+GGG | + | chr7_2:61372335-61372354 | None:intergenic | 20.0% |
| !! | AATACAAAGTATACAATTAG+AGG | + | chr7_2:61372336-61372355 | None:intergenic | 20.0% |
| !! | ATAGTTTAAGGATTATTGTT+TGG | - | chr7_2:61372816-61372835 | Msa1067110:intron | 20.0% |
| !!! | AATATTTTCATAAGTTGACT+TGG | + | chr7_2:61372907-61372926 | None:intergenic | 20.0% |
| !! | TCACATAAATACTTATGTAT+AGG | + | chr7_2:61372985-61373004 | None:intergenic | 20.0% |
| !! | ACATAAAAAACTTACCTTTA+TGG | + | chr7_2:61371726-61371745 | None:intergenic | 20.0% |
| !! | TTATAATCACATGTATGTAT+CGG | - | chr7_2:61372247-61372266 | Msa1067110:intron | 20.0% |
| !! | ATACAAAGTATACAATTAGA+GGG | + | chr7_2:61372335-61372354 | None:intergenic | 20.0% |
| !! | AATACAAAGTATACAATTAG+AGG | + | chr7_2:61372336-61372355 | None:intergenic | 20.0% |
| !! | ATAGTTTAAGGATTATTGTT+TGG | - | chr7_2:61372816-61372835 | Msa1067110:intron | 20.0% |
| !!! | AATATTTTCATAAGTTGACT+TGG | + | chr7_2:61372907-61372926 | None:intergenic | 20.0% |
| !! | TCACATAAATACTTATGTAT+AGG | + | chr7_2:61372985-61373004 | None:intergenic | 20.0% |
| !! | GAATTTGATTGTGTTTGTTT+TGG | - | chr7_2:61371833-61371852 | Msa1067110:CDS | 25.0% |
| !!! | TTTGTATGTTGTTTGTTTTG+TGG | - | chr7_2:61372010-61372029 | Msa1067110:intron | 25.0% |
| ! | AATTCTTGTAACATGTAACT+AGG | - | chr7_2:61372078-61372097 | Msa1067110:intron | 25.0% |
| ! | AAAAGTTACAATGACATGAA+AGG | + | chr7_2:61372380-61372399 | None:intergenic | 25.0% |
| ! | TAAGTAACAAAAAGAACTTC+TGG | - | chr7_2:61372518-61372537 | Msa1067110:CDS | 25.0% |
| !! | AAAAAGAACTTCTGGAAAAT+GGG | - | chr7_2:61372526-61372545 | Msa1067110:CDS | 25.0% |
| ! | CTACTAACATAGTAATAAAC+TGG | + | chr7_2:61372595-61372614 | None:intergenic | 25.0% |
| ! | AATGTTGGAGATGAAAATAA+TGG | + | chr7_2:61372660-61372679 | None:intergenic | 25.0% |
| !! | TTATTGTTTGGTAGAACTTT+TGG | - | chr7_2:61372828-61372847 | Msa1067110:intron | 25.0% |
| !!! | ATAGGCTATTTCTATAACAA+AGG | + | chr7_2:61372967-61372986 | None:intergenic | 25.0% |
| ! | GTAGAACTATCAAAATCAAA+TGG | - | chr7_2:61373400-61373419 | Msa1067110:five_prime_UTR | 25.0% |
| !! | GAATTTGATTGTGTTTGTTT+TGG | - | chr7_2:61371833-61371852 | Msa1067110:CDS | 25.0% |
| !!! | TTTGTATGTTGTTTGTTTTG+TGG | - | chr7_2:61372010-61372029 | Msa1067110:intron | 25.0% |
| ! | AATTCTTGTAACATGTAACT+AGG | - | chr7_2:61372078-61372097 | Msa1067110:intron | 25.0% |
| ! | AAAAGTTACAATGACATGAA+AGG | + | chr7_2:61372380-61372399 | None:intergenic | 25.0% |
| ! | TAAGTAACAAAAAGAACTTC+TGG | - | chr7_2:61372518-61372537 | Msa1067110:CDS | 25.0% |
| !! | AAAAAGAACTTCTGGAAAAT+GGG | - | chr7_2:61372526-61372545 | Msa1067110:CDS | 25.0% |
| ! | CTACTAACATAGTAATAAAC+TGG | + | chr7_2:61372595-61372614 | None:intergenic | 25.0% |
| ! | AATGTTGGAGATGAAAATAA+TGG | + | chr7_2:61372660-61372679 | None:intergenic | 25.0% |
| !! | TTATTGTTTGGTAGAACTTT+TGG | - | chr7_2:61372828-61372847 | Msa1067110:intron | 25.0% |
| !!! | ATAGGCTATTTCTATAACAA+AGG | + | chr7_2:61372967-61372986 | None:intergenic | 25.0% |
| ! | GTAGAACTATCAAAATCAAA+TGG | - | chr7_2:61373400-61373419 | Msa1067110:five_prime_UTR | 25.0% |
| !! | CTTAGTTTTCTCAGTTTTCA+TGG | - | chr7_2:61371754-61371773 | Msa1067110:CDS | 30.0% |
| !! | CTTTTGAGAGAACAAGAATT+GGG | + | chr7_2:61371867-61371886 | None:intergenic | 30.0% |
| CAATTCTTGTTCTCTCAAAA+GGG | - | chr7_2:61371866-61371885 | Msa1067110:CDS | 30.0% | |
| !!! | GGTTGTTGTTTTTTGTTGTT+GGG | - | chr7_2:61371887-61371906 | Msa1067110:CDS | 30.0% |
| !!! | GTTGTTGTTTTTTGTTGTTG+GGG | - | chr7_2:61371888-61371907 | Msa1067110:CDS | 30.0% |
| TACAAGACAAAACAAAACAG+AGG | + | chr7_2:61371934-61371953 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTTGTCTTGTAG+TGG | - | chr7_2:61371935-61371954 | Msa1067110:CDS | 30.0% |
| !!! | ATGTTGTTTGTTTTGTGGAT+TGG | - | chr7_2:61372015-61372034 | Msa1067110:intron | 30.0% |
| ATCTATTAGCTATGTGTCTT+TGG | - | chr7_2:61372175-61372194 | Msa1067110:intron | 30.0% | |
| AAAAAAGAATGAAACTGTCG+AGG | - | chr7_2:61372484-61372503 | Msa1067110:intron | 30.0% | |
| ! | CAAAAAGAACTTCTGGAAAA+TGG | - | chr7_2:61372525-61372544 | Msa1067110:CDS | 30.0% |
| AATAAAAAGGTGACGAATGT+TGG | + | chr7_2:61372675-61372694 | None:intergenic | 30.0% | |
| ! | GTACTTCTGAAAGAATAATC+TGG | - | chr7_2:61372765-61372784 | Msa1067110:intron | 30.0% |
| ! | AATATCATCGTGTGTTATTG+AGG | + | chr7_2:61373326-61373345 | None:intergenic | 30.0% |
| !! | CTTAGTTTTCTCAGTTTTCA+TGG | - | chr7_2:61371754-61371773 | Msa1067110:CDS | 30.0% |
| !! | CTTTTGAGAGAACAAGAATT+GGG | + | chr7_2:61371867-61371886 | None:intergenic | 30.0% |
| CAATTCTTGTTCTCTCAAAA+GGG | - | chr7_2:61371866-61371885 | Msa1067110:CDS | 30.0% | |
| !!! | GGTTGTTGTTTTTTGTTGTT+GGG | - | chr7_2:61371887-61371906 | Msa1067110:CDS | 30.0% |
| !!! | GTTGTTGTTTTTTGTTGTTG+GGG | - | chr7_2:61371888-61371907 | Msa1067110:CDS | 30.0% |
| TACAAGACAAAACAAAACAG+AGG | + | chr7_2:61371934-61371953 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTTGTCTTGTAG+TGG | - | chr7_2:61371935-61371954 | Msa1067110:CDS | 30.0% |
| !!! | ATGTTGTTTGTTTTGTGGAT+TGG | - | chr7_2:61372015-61372034 | Msa1067110:intron | 30.0% |
| ATCTATTAGCTATGTGTCTT+TGG | - | chr7_2:61372175-61372194 | Msa1067110:intron | 30.0% | |
| AAAAAAGAATGAAACTGTCG+AGG | - | chr7_2:61372484-61372503 | Msa1067110:intron | 30.0% | |
| ! | CAAAAAGAACTTCTGGAAAA+TGG | - | chr7_2:61372525-61372544 | Msa1067110:CDS | 30.0% |
| AATAAAAAGGTGACGAATGT+TGG | + | chr7_2:61372675-61372694 | None:intergenic | 30.0% | |
| ! | GTACTTCTGAAAGAATAATC+TGG | - | chr7_2:61372765-61372784 | Msa1067110:intron | 30.0% |
| ! | AATATCATCGTGTGTTATTG+AGG | + | chr7_2:61373326-61373345 | None:intergenic | 30.0% |
| !! | TGTTGGTTTGTTGTGGAATT+TGG | + | chr7_2:61371668-61371687 | None:intergenic | 35.0% |
| AAAAGAAGAGATGAAGAGGA+AGG | + | chr7_2:61371699-61371718 | None:intergenic | 35.0% | |
| AAGCAAAAGAAGAGATGAAG+AGG | + | chr7_2:61371703-61371722 | None:intergenic | 35.0% | |
| ! | CTCTTCTTTTGCTTCCATAA+AGG | - | chr7_2:61371709-61371728 | Msa1067110:CDS | 35.0% |
| !!! | TGTTTTTTGGCCACTCTTTT+GGG | - | chr7_2:61371799-61371818 | Msa1067110:CDS | 35.0% |
| !! | CCTTTTGAGAGAACAAGAAT+TGG | + | chr7_2:61371868-61371887 | None:intergenic | 35.0% |
| CCAATTCTTGTTCTCTCAAA+AGG | - | chr7_2:61371865-61371884 | Msa1067110:CDS | 35.0% | |
| !!! | GGGTTGTTGTTTTTTGTTGT+TGG | - | chr7_2:61371886-61371905 | Msa1067110:CDS | 35.0% |
| !!! | TTTTGTTGTTGGGGTGTTTT+TGG | - | chr7_2:61371897-61371916 | Msa1067110:CDS | 35.0% |
| ! | ACACCTTTAATCTGAAGTGT+CGG | - | chr7_2:61372285-61372304 | Msa1067110:intron | 35.0% |
| ! | TCCTTGCAAATGATGTTTTC+TGG | + | chr7_2:61372569-61372588 | None:intergenic | 35.0% |
| AAGAGAACAGCGAAAACAAA+TGG | + | chr7_2:61372736-61372755 | None:intergenic | 35.0% | |
| TCTGAAAGAATAATCTGGTC+TGG | - | chr7_2:61372770-61372789 | Msa1067110:intron | 35.0% | |
| ! | ACACGTCTAGAAGATGTTTT+CGG | - | chr7_2:61372863-61372882 | Msa1067110:intron | 35.0% |
| CTTGGAGAGCTAATAGAAAT+AGG | + | chr7_2:61372889-61372908 | None:intergenic | 35.0% | |
| ! | GACATTTTCTTTGCAAGACT+CGG | + | chr7_2:61373284-61373303 | None:intergenic | 35.0% |
| AATCTGCATCTTTATCTCCA+AGG | - | chr7_2:61373374-61373393 | Msa1067110:intron | 35.0% | |
| ! | TTTGATAGTTCTACCTTCCT+TGG | + | chr7_2:61373394-61373413 | None:intergenic | 35.0% |
| AGTATTTGCAACAGAAGAAG+AGG | - | chr7_2:61373429-61373448 | Msa1067110:five_prime_UTR | 35.0% | |
| !! | TGTTGGTTTGTTGTGGAATT+TGG | + | chr7_2:61371668-61371687 | None:intergenic | 35.0% |
| AAAAGAAGAGATGAAGAGGA+AGG | + | chr7_2:61371699-61371718 | None:intergenic | 35.0% | |
| AAGCAAAAGAAGAGATGAAG+AGG | + | chr7_2:61371703-61371722 | None:intergenic | 35.0% | |
| ! | CTCTTCTTTTGCTTCCATAA+AGG | - | chr7_2:61371709-61371728 | Msa1067110:CDS | 35.0% |
| !!! | TGTTTTTTGGCCACTCTTTT+GGG | - | chr7_2:61371799-61371818 | Msa1067110:CDS | 35.0% |
| !! | CCTTTTGAGAGAACAAGAAT+TGG | + | chr7_2:61371868-61371887 | None:intergenic | 35.0% |
| CCAATTCTTGTTCTCTCAAA+AGG | - | chr7_2:61371865-61371884 | Msa1067110:CDS | 35.0% | |
| !!! | GGGTTGTTGTTTTTTGTTGT+TGG | - | chr7_2:61371886-61371905 | Msa1067110:CDS | 35.0% |
| !!! | TTTTGTTGTTGGGGTGTTTT+TGG | - | chr7_2:61371897-61371916 | Msa1067110:CDS | 35.0% |
| ! | ACACCTTTAATCTGAAGTGT+CGG | - | chr7_2:61372285-61372304 | Msa1067110:intron | 35.0% |
| ! | TCCTTGCAAATGATGTTTTC+TGG | + | chr7_2:61372569-61372588 | None:intergenic | 35.0% |
| AAGAGAACAGCGAAAACAAA+TGG | + | chr7_2:61372736-61372755 | None:intergenic | 35.0% | |
| TCTGAAAGAATAATCTGGTC+TGG | - | chr7_2:61372770-61372789 | Msa1067110:intron | 35.0% | |
| ! | ACACGTCTAGAAGATGTTTT+CGG | - | chr7_2:61372863-61372882 | Msa1067110:intron | 35.0% |
| CTTGGAGAGCTAATAGAAAT+AGG | + | chr7_2:61372889-61372908 | None:intergenic | 35.0% | |
| ! | GACATTTTCTTTGCAAGACT+CGG | + | chr7_2:61373284-61373303 | None:intergenic | 35.0% |
| AATCTGCATCTTTATCTCCA+AGG | - | chr7_2:61373374-61373393 | Msa1067110:intron | 35.0% | |
| ! | TTTGATAGTTCTACCTTCCT+TGG | + | chr7_2:61373394-61373413 | None:intergenic | 35.0% |
| AGTATTTGCAACAGAAGAAG+AGG | - | chr7_2:61373429-61373448 | Msa1067110:five_prime_UTR | 35.0% | |
| TGTGGAATTTGGTTGCTTGA+AGG | + | chr7_2:61371657-61371676 | None:intergenic | 40.0% | |
| !! | GGGAAATTGTTGGTTTGTTG+TGG | + | chr7_2:61371675-61371694 | None:intergenic | 40.0% |
| !!! | GTTCACCAACTCGTGTTTTT+TGG | - | chr7_2:61371786-61371805 | Msa1067110:CDS | 40.0% |
| !!! | GTGTTTTTTGGCCACTCTTT+TGG | - | chr7_2:61371798-61371817 | Msa1067110:CDS | 40.0% |
| TAGCACAAAACCCAAAAGAG+TGG | + | chr7_2:61371812-61371831 | None:intergenic | 40.0% | |
| TTGTCTTGTAGTGGTCAGTT+AGG | - | chr7_2:61371944-61371963 | Msa1067110:CDS | 40.0% | |
| TGTCTTGTAGTGGTCAGTTA+GGG | - | chr7_2:61371945-61371964 | Msa1067110:CDS | 40.0% | |
| TTAGGCTTGTGATAGCAGAA+TGG | - | chr7_2:61372459-61372478 | Msa1067110:intron | 40.0% | |
| ! | AAGAACTTCTGGAAAATGGG+AGG | - | chr7_2:61372529-61372548 | Msa1067110:CDS | 40.0% |
| GCCAGAAAACATCATTTGCA+AGG | - | chr7_2:61372565-61372584 | Msa1067110:exon | 40.0% | |
| GCATTAGCAATGATTGTGTG+AGG | - | chr7_2:61372708-61372727 | Msa1067110:intron | 40.0% | |
| CATCCATACCTGATACATTC+CGG | - | chr7_2:61373200-61373219 | Msa1067110:intron | 40.0% | |
| AAGACAGTGTCATAAGGAAG+AGG | + | chr7_2:61373238-61373257 | None:intergenic | 40.0% | |
| CTTCCTTATGACACTGTCTT+CGG | - | chr7_2:61373238-61373257 | Msa1067110:intron | 40.0% | |
| TGCATCTTTATCTCCAAGGA+AGG | - | chr7_2:61373378-61373397 | Msa1067110:intron | 40.0% | |
| TGTGGAATTTGGTTGCTTGA+AGG | + | chr7_2:61371657-61371676 | None:intergenic | 40.0% | |
| !! | GGGAAATTGTTGGTTTGTTG+TGG | + | chr7_2:61371675-61371694 | None:intergenic | 40.0% |
| !!! | GTTCACCAACTCGTGTTTTT+TGG | - | chr7_2:61371786-61371805 | Msa1067110:CDS | 40.0% |
| !!! | GTGTTTTTTGGCCACTCTTT+TGG | - | chr7_2:61371798-61371817 | Msa1067110:CDS | 40.0% |
| TAGCACAAAACCCAAAAGAG+TGG | + | chr7_2:61371812-61371831 | None:intergenic | 40.0% | |
| TTGTCTTGTAGTGGTCAGTT+AGG | - | chr7_2:61371944-61371963 | Msa1067110:CDS | 40.0% | |
| TGTCTTGTAGTGGTCAGTTA+GGG | - | chr7_2:61371945-61371964 | Msa1067110:CDS | 40.0% | |
| TTAGGCTTGTGATAGCAGAA+TGG | - | chr7_2:61372459-61372478 | Msa1067110:intron | 40.0% | |
| ! | AAGAACTTCTGGAAAATGGG+AGG | - | chr7_2:61372529-61372548 | Msa1067110:CDS | 40.0% |
| GCCAGAAAACATCATTTGCA+AGG | - | chr7_2:61372565-61372584 | Msa1067110:exon | 40.0% | |
| GCATTAGCAATGATTGTGTG+AGG | - | chr7_2:61372708-61372727 | Msa1067110:intron | 40.0% | |
| CATCCATACCTGATACATTC+CGG | - | chr7_2:61373200-61373219 | Msa1067110:intron | 40.0% | |
| AAGACAGTGTCATAAGGAAG+AGG | + | chr7_2:61373238-61373257 | None:intergenic | 40.0% | |
| CTTCCTTATGACACTGTCTT+CGG | - | chr7_2:61373238-61373257 | Msa1067110:intron | 40.0% | |
| TGCATCTTTATCTCCAAGGA+AGG | - | chr7_2:61373378-61373397 | Msa1067110:intron | 40.0% | |
| CTTGAAGGTGGCTATGGTTA+TGG | + | chr7_2:61371642-61371661 | None:intergenic | 45.0% | |
| GGAATTTGGTTGCTTGAAGG+TGG | + | chr7_2:61371654-61371673 | None:intergenic | 45.0% | |
| AGAGGAAGGTGGGAAATTGT+TGG | + | chr7_2:61371685-61371704 | None:intergenic | 45.0% | |
| GAAGAGATGAAGAGGAAGGT+GGG | + | chr7_2:61371695-61371714 | None:intergenic | 45.0% | |
| AGAAGAGATGAAGAGGAAGG+TGG | + | chr7_2:61371696-61371715 | None:intergenic | 45.0% | |
| AGTGGCCAAAAAACACGAGT+TGG | + | chr7_2:61371794-61371813 | None:intergenic | 45.0% | |
| GAGAGAACAAGAATTGGGTG+AGG | + | chr7_2:61371862-61371881 | None:intergenic | 45.0% | |
| ! | CACATGTATGTATCGGTGTC+AGG | - | chr7_2:61372254-61372273 | Msa1067110:intron | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | + | chr7_2:61372291-61372310 | None:intergenic | 45.0% |
| !! | AATCTGAAGTGTCGGTGCAT+TGG | - | chr7_2:61372293-61372312 | Msa1067110:intron | 45.0% |
| ! | AAGTTGGCGGGCACTAAAAA+CGG | + | chr7_2:61373096-61373115 | None:intergenic | 45.0% |
| TTCGATCTCTGCTGGATTTC+TGG | - | chr7_2:61373159-61373178 | Msa1067110:intron | 45.0% | |
| !! | ATCTCTGCTGGATTTCTGGT+TGG | - | chr7_2:61373163-61373182 | Msa1067110:intron | 45.0% |
| !! | ATTTCTGGTTGGCTTGAACC+TGG | - | chr7_2:61373174-61373193 | Msa1067110:intron | 45.0% |
| TATCAGGTATGGATGCTTCC+AGG | + | chr7_2:61373195-61373214 | None:intergenic | 45.0% | |
| AGACCGGAATGTATCAGGTA+TGG | + | chr7_2:61373206-61373225 | None:intergenic | 45.0% | |
| TCTTTGCAAGACTCGGAATC+AGG | + | chr7_2:61373277-61373296 | None:intergenic | 45.0% | |
| CTGTACCTTCGAGGCAAATA+GGG | + | chr7_2:61373462-61373481 | None:intergenic | 45.0% | |
| ACTGTACCTTCGAGGCAAAT+AGG | + | chr7_2:61373463-61373482 | None:intergenic | 45.0% | |
| CTTGAAGGTGGCTATGGTTA+TGG | + | chr7_2:61371642-61371661 | None:intergenic | 45.0% | |
| GGAATTTGGTTGCTTGAAGG+TGG | + | chr7_2:61371654-61371673 | None:intergenic | 45.0% | |
| AGAGGAAGGTGGGAAATTGT+TGG | + | chr7_2:61371685-61371704 | None:intergenic | 45.0% | |
| GAAGAGATGAAGAGGAAGGT+GGG | + | chr7_2:61371695-61371714 | None:intergenic | 45.0% | |
| AGAAGAGATGAAGAGGAAGG+TGG | + | chr7_2:61371696-61371715 | None:intergenic | 45.0% | |
| AGTGGCCAAAAAACACGAGT+TGG | + | chr7_2:61371794-61371813 | None:intergenic | 45.0% | |
| GAGAGAACAAGAATTGGGTG+AGG | + | chr7_2:61371862-61371881 | None:intergenic | 45.0% | |
| ! | CACATGTATGTATCGGTGTC+AGG | - | chr7_2:61372254-61372273 | Msa1067110:intron | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | + | chr7_2:61372291-61372310 | None:intergenic | 45.0% |
| !! | AATCTGAAGTGTCGGTGCAT+TGG | - | chr7_2:61372293-61372312 | Msa1067110:intron | 45.0% |
| ! | AAGTTGGCGGGCACTAAAAA+CGG | + | chr7_2:61373096-61373115 | None:intergenic | 45.0% |
| TTCGATCTCTGCTGGATTTC+TGG | - | chr7_2:61373159-61373178 | Msa1067110:intron | 45.0% | |
| !! | ATCTCTGCTGGATTTCTGGT+TGG | - | chr7_2:61373163-61373182 | Msa1067110:intron | 45.0% |
| !! | ATTTCTGGTTGGCTTGAACC+TGG | - | chr7_2:61373174-61373193 | Msa1067110:intron | 45.0% |
| TATCAGGTATGGATGCTTCC+AGG | + | chr7_2:61373195-61373214 | None:intergenic | 45.0% | |
| AGACCGGAATGTATCAGGTA+TGG | + | chr7_2:61373206-61373225 | None:intergenic | 45.0% | |
| TCTTTGCAAGACTCGGAATC+AGG | + | chr7_2:61373277-61373296 | None:intergenic | 45.0% | |
| CTGTACCTTCGAGGCAAATA+GGG | + | chr7_2:61373462-61373481 | None:intergenic | 45.0% | |
| ACTGTACCTTCGAGGCAAAT+AGG | + | chr7_2:61373463-61373482 | None:intergenic | 45.0% | |
| !! | TAATGATTAAAATAATAAAA+AGG | + | chr7_2:61372688-61372707 | None:intergenic | 5.0% |
| !! | TAATGATTAAAATAATAAAA+AGG | + | chr7_2:61372688-61372707 | None:intergenic | 5.0% |
| TGGTTGCTTGAAGGTGGCTA+TGG | + | chr7_2:61371648-61371667 | None:intergenic | 50.0% | |
| CTTGTAGTGGTCAGTTAGGG+TGG | - | chr7_2:61371948-61371967 | Msa1067110:CDS | 50.0% | |
| TCCCGCTCTTCAAAAGTTGG+CGG | + | chr7_2:61373109-61373128 | None:intergenic | 50.0% | |
| GACTCCCGCTCTTCAAAAGT+TGG | + | chr7_2:61373112-61373131 | None:intergenic | 50.0% | |
| ! | TCATAAGGAAGAGGCACAGG+AGG | + | chr7_2:61373229-61373248 | None:intergenic | 50.0% |
| ! | GTGTCATAAGGAAGAGGCAC+AGG | + | chr7_2:61373232-61373251 | None:intergenic | 50.0% |
| CCTCCGAAGACAGTGTCATA+AGG | + | chr7_2:61373244-61373263 | None:intergenic | 50.0% | |
| CCTTATGACACTGTCTTCGG+AGG | - | chr7_2:61373241-61373260 | Msa1067110:intron | 50.0% | |
| CACAAGCAACTGTACCTTCG+AGG | + | chr7_2:61373471-61373490 | None:intergenic | 50.0% | |
| TGGTTGCTTGAAGGTGGCTA+TGG | + | chr7_2:61371648-61371667 | None:intergenic | 50.0% | |
| CTTGTAGTGGTCAGTTAGGG+TGG | - | chr7_2:61371948-61371967 | Msa1067110:CDS | 50.0% | |
| TCCCGCTCTTCAAAAGTTGG+CGG | + | chr7_2:61373109-61373128 | None:intergenic | 50.0% | |
| GACTCCCGCTCTTCAAAAGT+TGG | + | chr7_2:61373112-61373131 | None:intergenic | 50.0% | |
| ! | TCATAAGGAAGAGGCACAGG+AGG | + | chr7_2:61373229-61373248 | None:intergenic | 50.0% |
| ! | GTGTCATAAGGAAGAGGCAC+AGG | + | chr7_2:61373232-61373251 | None:intergenic | 50.0% |
| CCTCCGAAGACAGTGTCATA+AGG | + | chr7_2:61373244-61373263 | None:intergenic | 50.0% | |
| CCTTATGACACTGTCTTCGG+AGG | - | chr7_2:61373241-61373260 | Msa1067110:intron | 50.0% | |
| CACAAGCAACTGTACCTTCG+AGG | + | chr7_2:61373471-61373490 | None:intergenic | 50.0% | |
| !! | GCCCGCCAACTTTTGAAGAG+CGG | - | chr7_2:61373104-61373123 | Msa1067110:intron | 55.0% |
| CCCGCTCTTCAAAAGTTGGC+GGG | + | chr7_2:61373108-61373127 | None:intergenic | 55.0% | |
| !! | CCCGCCAACTTTTGAAGAGC+GGG | - | chr7_2:61373105-61373124 | Msa1067110:intron | 55.0% |
| ! | AGCAGTGGTAGCGTCATTGG+AGG | + | chr7_2:61373140-61373159 | None:intergenic | 55.0% |
| ! | CGAAGCAGTGGTAGCGTCAT+TGG | + | chr7_2:61373143-61373162 | None:intergenic | 55.0% |
| ACCACTGCTTCGATCTCTGC+TGG | - | chr7_2:61373151-61373170 | Msa1067110:intron | 55.0% | |
| TCCAGCAGAGATCGAAGCAG+TGG | + | chr7_2:61373155-61373174 | None:intergenic | 55.0% | |
| GGAGGAGACCGGAATGTATC+AGG | + | chr7_2:61373211-61373230 | None:intergenic | 55.0% | |
| TGCTGCCCTATTTGCCTCGA+AGG | - | chr7_2:61373454-61373473 | Msa1067110:five_prime_UTR | 55.0% | |
| !! | GCCCGCCAACTTTTGAAGAG+CGG | - | chr7_2:61373104-61373123 | Msa1067110:intron | 55.0% |
| CCCGCTCTTCAAAAGTTGGC+GGG | + | chr7_2:61373108-61373127 | None:intergenic | 55.0% | |
| !! | CCCGCCAACTTTTGAAGAGC+GGG | - | chr7_2:61373105-61373124 | Msa1067110:intron | 55.0% |
| ! | AGCAGTGGTAGCGTCATTGG+AGG | + | chr7_2:61373140-61373159 | None:intergenic | 55.0% |
| ! | CGAAGCAGTGGTAGCGTCAT+TGG | + | chr7_2:61373143-61373162 | None:intergenic | 55.0% |
| ACCACTGCTTCGATCTCTGC+TGG | - | chr7_2:61373151-61373170 | Msa1067110:intron | 55.0% | |
| TCCAGCAGAGATCGAAGCAG+TGG | + | chr7_2:61373155-61373174 | None:intergenic | 55.0% | |
| GGAGGAGACCGGAATGTATC+AGG | + | chr7_2:61373211-61373230 | None:intergenic | 55.0% | |
| TGCTGCCCTATTTGCCTCGA+AGG | - | chr7_2:61373454-61373473 | Msa1067110:five_prime_UTR | 55.0% | |
| ! | GAAGAGGCACAGGAGGAGAC+CGG | + | chr7_2:61373222-61373241 | None:intergenic | 60.0% |
| ! | GAAGAGGCACAGGAGGAGAC+CGG | + | chr7_2:61373222-61373241 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 61371620 | 61373498 | 61371620 | ID=Msa1067110;Name=Msa1067110 |
| chr7_2 | mRNA | 61371620 | 61373498 | 61371620 | ID=Msa1067110-mRNA-1;Parent=Msa1067110;Name=Msa1067110-mRNA-1;_AED=0.25;_eAED=0.25;_QI=192|0.5|0.66|1|0.5|0.66|3|0|145 |
| chr7_2 | exon | 61371620 | 61371994 | 61371620 | ID=Msa1067110-mRNA-1:exon:12365;Parent=Msa1067110-mRNA-1 |
| chr7_2 | exon | 61372512 | 61372655 | 61372512 | ID=Msa1067110-mRNA-1:exon:12364;Parent=Msa1067110-mRNA-1 |
| chr7_2 | exon | 61373388 | 61373498 | 61373388 | ID=Msa1067110-mRNA-1:exon:12363;Parent=Msa1067110-mRNA-1 |
| chr7_2 | five_prime_UTR | 61373388 | 61373498 | 61373388 | ID=Msa1067110-mRNA-1:five_prime_utr;Parent=Msa1067110-mRNA-1 |
| chr7_2 | five_prime_UTR | 61372575 | 61372655 | 61372575 | ID=Msa1067110-mRNA-1:five_prime_utr;Parent=Msa1067110-mRNA-1 |
| chr7_2 | CDS | 61372512 | 61372574 | 61372512 | ID=Msa1067110-mRNA-1:cds;Parent=Msa1067110-mRNA-1 |
| chr7_2 | CDS | 61371620 | 61371994 | 61371620 | ID=Msa1067110-mRNA-1:cds;Parent=Msa1067110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
