Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149280 | XP_003623058.1 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 2.33e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149280 | sp|Q9SIB4|WOX3_ARATH | 41.841 | 239 | 105 | 6 | 1 | 205 | 1 | 239 | 1.33e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149280 | G7L3H0 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 1.11e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1149280 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1106060 | Msa1149280 | 0.821536 | 3.832003e-53 | -8.615850e-47 |
| Msa0860170 | Msa1149280 | 0.804564 | 2.033814e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149280 | MtrunA17_Chr7g0238431 | 94.660 | 206 | 10 | 1 | 1 | 205 | 1 | 206 | 2.15e-134 | 375 |
| Msa1149280 | MtrunA17_Chr4g0043891 | 71.429 | 70 | 20 | 0 | 1 | 70 | 1 | 70 | 8.93e-30 | 110 |
| Msa1149280 | MtrunA17_Chr1g0153171 | 71.642 | 67 | 19 | 0 | 4 | 70 | 86 | 152 | 1.38e-28 | 107 |
| Msa1149280 | MtrunA17_Chr8g0392991 | 74.627 | 67 | 17 | 0 | 6 | 72 | 94 | 160 | 2.79e-28 | 108 |
| Msa1149280 | MtrunA17_Chr5g0436661 | 69.841 | 63 | 19 | 0 | 8 | 70 | 33 | 95 | 1.36e-27 | 103 |
| Msa1149280 | MtrunA17_Chr4g0031341 | 65.625 | 64 | 22 | 0 | 8 | 71 | 25 | 88 | 2.00e-24 | 96.7 |
| Msa1149280 | MtrunA17_Chr5g0405351 | 67.692 | 65 | 20 | 1 | 6 | 69 | 28 | 92 | 7.33e-24 | 96.3 |
| Msa1149280 | MtrunA17_Chr8g0385441 | 74.074 | 54 | 14 | 0 | 19 | 72 | 93 | 146 | 1.68e-21 | 86.7 |
| Msa1149280 | MtrunA17_Chr3g0125111 | 72.222 | 54 | 15 | 0 | 19 | 72 | 91 | 144 | 6.24e-21 | 85.1 |
| Msa1149280 | MtrunA17_Chr2g0283141 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 3.51e-14 | 70.5 |
| Msa1149280 | MtrunA17_Chr7g0223471 | 39.286 | 84 | 51 | 0 | 2 | 85 | 41 | 124 | 5.86e-14 | 69.7 |
| Msa1149280 | MtrunA17_Chr1g0212511 | 46.774 | 62 | 33 | 0 | 8 | 69 | 85 | 146 | 1.03e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149280 | AT2G28610.1 | 41.841 | 239 | 105 | 6 | 1 | 205 | 1 | 239 | 1.35e-41 | 141 |
| Msa1149280 | AT3G18010.1 | 73.134 | 67 | 18 | 0 | 6 | 72 | 74 | 140 | 5.29e-28 | 108 |
| Msa1149280 | AT3G11260.1 | 69.697 | 66 | 19 | 1 | 8 | 73 | 24 | 88 | 2.63e-27 | 102 |
| Msa1149280 | AT1G46480.2 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 3.43e-27 | 102 |
| Msa1149280 | AT1G46480.1 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 1.94e-26 | 102 |
| Msa1149280 | AT5G05770.1 | 65.079 | 63 | 22 | 0 | 8 | 70 | 29 | 91 | 3.54e-26 | 97.8 |
| Msa1149280 | AT5G59340.1 | 74.194 | 62 | 16 | 0 | 6 | 67 | 12 | 73 | 5.35e-26 | 101 |
| Msa1149280 | AT2G17950.1 | 67.692 | 65 | 20 | 1 | 6 | 69 | 36 | 100 | 2.00e-23 | 95.1 |
| Msa1149280 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 8 | 62 | 61 | 115 | 1.22e-22 | 92.8 |
| Msa1149280 | AT2G33880.1 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 5.45e-14 | 70.1 |
| Msa1149280 | AT5G45980.1 | 47.761 | 67 | 35 | 0 | 3 | 69 | 50 | 116 | 5.52e-14 | 69.7 |
| Msa1149280 | AT2G33880.2 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 6.68e-14 | 69.7 |
| Msa1149280 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 8 | 67 | 33 | 92 | 3.49e-13 | 64.7 |
| Msa1149280 | AT1G20700.3 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 8.54e-13 | 64.7 |
| Msa1149280 | AT1G20700.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 1.12e-12 | 64.7 |
| Msa1149280 | AT4G35550.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 99 | 158 | 4.07e-12 | 63.9 |
Find 32 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACTCACCTTTCTTTCTA+TGG | 0.291926 | 7_4:-30574845 | Msa1149280:CDS |
| GACATTGCATTCAACAACTA+TGG | 0.308834 | 7_4:-30573966 | Msa1149280:CDS |
| TCTTTCTATGGTAGAATAGA+AGG | 0.310281 | 7_4:-30574833 | Msa1149280:CDS |
| TTATAATAATCAACAAAGTT+TGG | 0.344120 | 7_4:-30574000 | Msa1149280:CDS |
| TGAACAACTTATGATCTTAG+AGG | 0.352994 | 7_4:-30574921 | Msa1149280:CDS |
| CAAAAGTACTACCAACAAAA+TGG | 0.364559 | 7_4:+30574645 | None:intergenic |
| ATCATAAGTTGTTCAGTTGT+AGG | 0.386722 | 7_4:+30574929 | None:intergenic |
| TGCAACATGAAGGTGCTTCA+TGG | 0.419089 | 7_4:+30573919 | None:intergenic |
| TCTTGTGCATTAGATCCAAA+AGG | 0.476916 | 7_4:+30574617 | None:intergenic |
| TCATAAGTTGTTCAGTTGTA+GGG | 0.482629 | 7_4:+30574930 | None:intergenic |
| AAGGGGCAATCAATTGCAAA+TGG | 0.485059 | 7_4:-30574028 | Msa1149280:CDS |
| CTCCACCTGGTTCATCAAGA+TGG | 0.487034 | 7_4:-30574955 | Msa1149280:CDS |
| GGGATAGACAGAAGTTAAGA+AGG | 0.493019 | 7_4:-30574772 | Msa1149280:CDS |
| CTATTGGTTTCAGAATCATA+AGG | 0.495866 | 7_4:-30574798 | Msa1149280:CDS |
| CTATTCTACCATAGAAAGAA+AGG | 0.501141 | 7_4:+30574837 | None:intergenic |
| GGTTTCAGAATCATAAGGCT+AGG | 0.507758 | 7_4:-30574793 | Msa1149280:CDS |
| TTGCATTCAACAACTATGGT+TGG | 0.509929 | 7_4:-30573962 | Msa1149280:CDS |
| CAACTATGGTTGGAGACTCA+TGG | 0.516846 | 7_4:-30573952 | Msa1149280:CDS |
| TTGATTCTTGTTGTTGTGAG+AGG | 0.523160 | 7_4:+30573867 | None:intergenic |
| TAATAATCAACAAAGTTTGG+TGG | 0.528741 | 7_4:-30573997 | Msa1149280:CDS |
| TGCTGAATTTGAACAGCACT+AGG | 0.547085 | 7_4:+30574872 | None:intergenic |
| GTTTCAGAATCATAAGGCTA+GGG | 0.551754 | 7_4:-30574792 | Msa1149280:CDS |
| CTTGTGCATTAGATCCAAAA+GGG | 0.556523 | 7_4:+30574618 | None:intergenic |
| GTAGCTGCAAACACATCAGA+AGG | 0.562740 | 7_4:-30574047 | Msa1149280:CDS |
| AGAGGTTTAGTGCAACATGA+AGG | 0.572055 | 7_4:+30573909 | None:intergenic |
| TTAGAGGAACTGTATAGAAG+TGG | 0.579089 | 7_4:-30574905 | Msa1149280:CDS |
| CAATCAATAATGTCTCCACC+TGG | 0.600364 | 7_4:-30574968 | None:intergenic |
| AAAAGATCAAGAGTCTTGAG+AGG | 0.601753 | 7_4:+30573891 | None:intergenic |
| GGGCTCCATCTTGATGAACC+AGG | 0.608838 | 7_4:+30574950 | None:intergenic |
| TAGCTGCAAACACATCAGAA+GGG | 0.621365 | 7_4:-30574046 | Msa1149280:CDS |
| AGCTGCAAACACATCAGAAG+GGG | 0.625629 | 7_4:-30574045 | Msa1149280:CDS |
| CTCCATCTTGATGAACCAGG+TGG | 0.692416 | 7_4:+30574953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTAATACATATATA+GGG | - | chr7_4:30574652-30574671 | Msa1149280:CDS | 10.0% |
| !! | ATTCAATTAATACATATATA+GGG | - | chr7_4:30574652-30574671 | Msa1149280:CDS | 10.0% |
| !! | CATTCAATTAATACATATAT+AGG | - | chr7_4:30574651-30574670 | Msa1149280:CDS | 15.0% |
| !! | TTATAATAATCAACAAAGTT+TGG | - | chr7_4:30574819-30574838 | Msa1149280:CDS | 15.0% |
| !! | CATTCAATTAATACATATAT+AGG | - | chr7_4:30574651-30574670 | Msa1149280:CDS | 15.0% |
| !! | TTATAATAATCAACAAAGTT+TGG | - | chr7_4:30574819-30574838 | Msa1149280:CDS | 15.0% |
| !!! | AAGGAAAAAATGTTTTCTAT+TGG | - | chr7_4:30574005-30574024 | Msa1149280:CDS | 20.0% |
| !! | GAAAGAAAAAGAAGAAAAAT+AGG | + | chr7_4:30574324-30574343 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACACT+TGG | - | chr7_4:30574350-30574369 | Msa1149280:intron | 20.0% |
| !! | AAATTTCTTGACTTAAATCA+TGG | - | chr7_4:30574380-30574399 | Msa1149280:intron | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_4:30574393-30574412 | Msa1149280:intron | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | + | chr7_4:30574487-30574506 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | + | chr7_4:30574548-30574567 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | - | chr7_4:30574547-30574566 | Msa1149280:intron | 20.0% |
| !!! | AAGGAAAAAATGTTTTCTAT+TGG | - | chr7_4:30574005-30574024 | Msa1149280:CDS | 20.0% |
| !! | GAAAGAAAAAGAAGAAAAAT+AGG | + | chr7_4:30574324-30574343 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACACT+TGG | - | chr7_4:30574350-30574369 | Msa1149280:intron | 20.0% |
| !! | AAATTTCTTGACTTAAATCA+TGG | - | chr7_4:30574380-30574399 | Msa1149280:intron | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_4:30574393-30574412 | Msa1149280:intron | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | + | chr7_4:30574487-30574506 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | + | chr7_4:30574548-30574567 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | - | chr7_4:30574547-30574566 | Msa1149280:intron | 20.0% |
| !! | ATGATTAGTAACCATTTTGT+TGG | - | chr7_4:30574163-30574182 | Msa1149280:intron | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | + | chr7_4:30574314-30574333 | None:intergenic | 25.0% |
| ! | ATACCTCAAAATCTTTCATA+TGG | + | chr7_4:30574441-30574460 | None:intergenic | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | - | chr7_4:30574553-30574572 | Msa1149280:intron | 25.0% |
| ! | TCTACTTTCTTCATTTGATA+TGG | - | chr7_4:30574737-30574756 | Msa1149280:CDS | 25.0% |
| ! | TCTTCATTTGATATGGATTT+AGG | - | chr7_4:30574744-30574763 | Msa1149280:CDS | 25.0% |
| ! | CTTCATTTGATATGGATTTA+GGG | - | chr7_4:30574745-30574764 | Msa1149280:CDS | 25.0% |
| ! | TAATAATCAACAAAGTTTGG+TGG | - | chr7_4:30574822-30574841 | Msa1149280:CDS | 25.0% |
| !! | ATGATTAGTAACCATTTTGT+TGG | - | chr7_4:30574163-30574182 | Msa1149280:intron | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | + | chr7_4:30574314-30574333 | None:intergenic | 25.0% |
| ! | ATACCTCAAAATCTTTCATA+TGG | + | chr7_4:30574441-30574460 | None:intergenic | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | - | chr7_4:30574553-30574572 | Msa1149280:intron | 25.0% |
| ! | TCTACTTTCTTCATTTGATA+TGG | - | chr7_4:30574737-30574756 | Msa1149280:CDS | 25.0% |
| ! | TCTTCATTTGATATGGATTT+AGG | - | chr7_4:30574744-30574763 | Msa1149280:CDS | 25.0% |
| ! | CTTCATTTGATATGGATTTA+GGG | - | chr7_4:30574745-30574764 | Msa1149280:CDS | 25.0% |
| ! | TAATAATCAACAAAGTTTGG+TGG | - | chr7_4:30574822-30574841 | Msa1149280:CDS | 25.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | + | chr7_4:30573892-30573911 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | + | chr7_4:30573893-30573912 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | - | chr7_4:30573898-30573917 | Msa1149280:CDS | 30.0% | |
| CTATTCTACCATAGAAAGAA+AGG | + | chr7_4:30573985-30574004 | None:intergenic | 30.0% | |
| TCTTTCTATGGTAGAATAGA+AGG | - | chr7_4:30573986-30574005 | Msa1149280:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | - | chr7_4:30574021-30574040 | Msa1149280:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | + | chr7_4:30574177-30574196 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | - | chr7_4:30574175-30574194 | Msa1149280:intron | 30.0% |
| ! | ATGCCATATGAAAGATTTTG+AGG | - | chr7_4:30574435-30574454 | Msa1149280:intron | 30.0% |
| TGAATGCAAACAATTTCACT+TGG | - | chr7_4:30574605-30574624 | Msa1149280:CDS | 30.0% | |
| ! | AATCCAATCCTTTTGTGTAA+TGG | + | chr7_4:30574631-30574650 | None:intergenic | 30.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | + | chr7_4:30573892-30573911 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | + | chr7_4:30573893-30573912 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | - | chr7_4:30573898-30573917 | Msa1149280:CDS | 30.0% | |
| CTATTCTACCATAGAAAGAA+AGG | + | chr7_4:30573985-30574004 | None:intergenic | 30.0% | |
| TCTTTCTATGGTAGAATAGA+AGG | - | chr7_4:30573986-30574005 | Msa1149280:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | - | chr7_4:30574021-30574040 | Msa1149280:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | + | chr7_4:30574177-30574196 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | - | chr7_4:30574175-30574194 | Msa1149280:intron | 30.0% |
| ! | ATGCCATATGAAAGATTTTG+AGG | - | chr7_4:30574435-30574454 | Msa1149280:intron | 30.0% |
| TGAATGCAAACAATTTCACT+TGG | - | chr7_4:30574605-30574624 | Msa1149280:CDS | 30.0% | |
| ! | AATCCAATCCTTTTGTGTAA+TGG | + | chr7_4:30574631-30574650 | None:intergenic | 30.0% |
| TTAGAGGAACTGTATAGAAG+TGG | - | chr7_4:30573914-30573933 | Msa1149280:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | - | chr7_4:30573974-30573993 | Msa1149280:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | - | chr7_4:30574027-30574046 | Msa1149280:CDS | 35.0% | |
| CTTGTGCATTAGATCCAAAA+GGG | + | chr7_4:30574204-30574223 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | + | chr7_4:30574205-30574224 | None:intergenic | 35.0% | |
| CAAGCTAGGTGAGTTAAAAA+AGG | + | chr7_4:30574233-30574252 | None:intergenic | 35.0% | |
| ATTACCTCAAAAAGCAAGCT+AGG | + | chr7_4:30574247-30574266 | None:intergenic | 35.0% | |
| GAAAATTGCGGTCAAAATTG+TGG | + | chr7_4:30574475-30574494 | None:intergenic | 35.0% | |
| GACATTGCATTCAACAACTA+TGG | - | chr7_4:30574853-30574872 | Msa1149280:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | - | chr7_4:30574857-30574876 | Msa1149280:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | + | chr7_4:30574931-30574950 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGTGAG+AGG | + | chr7_4:30574955-30574974 | None:intergenic | 35.0% |
| TTAGAGGAACTGTATAGAAG+TGG | - | chr7_4:30573914-30573933 | Msa1149280:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | - | chr7_4:30573974-30573993 | Msa1149280:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | - | chr7_4:30574027-30574046 | Msa1149280:CDS | 35.0% | |
| CTTGTGCATTAGATCCAAAA+GGG | + | chr7_4:30574204-30574223 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | + | chr7_4:30574205-30574224 | None:intergenic | 35.0% | |
| CAAGCTAGGTGAGTTAAAAA+AGG | + | chr7_4:30574233-30574252 | None:intergenic | 35.0% | |
| ATTACCTCAAAAAGCAAGCT+AGG | + | chr7_4:30574247-30574266 | None:intergenic | 35.0% | |
| GAAAATTGCGGTCAAAATTG+TGG | + | chr7_4:30574475-30574494 | None:intergenic | 35.0% | |
| GACATTGCATTCAACAACTA+TGG | - | chr7_4:30574853-30574872 | Msa1149280:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | - | chr7_4:30574857-30574876 | Msa1149280:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | + | chr7_4:30574931-30574950 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGTGAG+AGG | + | chr7_4:30574955-30574974 | None:intergenic | 35.0% |
| TGCTGAATTTGAACAGCACT+AGG | + | chr7_4:30573950-30573969 | None:intergenic | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | - | chr7_4:30574026-30574045 | Msa1149280:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | - | chr7_4:30574047-30574066 | Msa1149280:CDS | 40.0% | |
| !! | AGTACTTTTGGCTACCCTTT+TGG | - | chr7_4:30574187-30574206 | Msa1149280:intron | 40.0% |
| GCGGTCTGTAACTTCAATTA+CGG | - | chr7_4:30574412-30574431 | Msa1149280:intron | 40.0% | |
| TCACTTGGCCATTACACAAA+AGG | - | chr7_4:30574620-30574639 | Msa1149280:CDS | 40.0% | |
| TGGCCATTACACAAAAGGAT+TGG | - | chr7_4:30574625-30574644 | Msa1149280:CDS | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | - | chr7_4:30574773-30574792 | Msa1149280:CDS | 40.0% | |
| AAGGGGCAATCAATTGCAAA+TGG | - | chr7_4:30574791-30574810 | Msa1149280:CDS | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | + | chr7_4:30574913-30574932 | None:intergenic | 40.0% | |
| TGCTGAATTTGAACAGCACT+AGG | + | chr7_4:30573950-30573969 | None:intergenic | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | - | chr7_4:30574026-30574045 | Msa1149280:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | - | chr7_4:30574047-30574066 | Msa1149280:CDS | 40.0% | |
| !! | AGTACTTTTGGCTACCCTTT+TGG | - | chr7_4:30574187-30574206 | Msa1149280:intron | 40.0% |
| GCGGTCTGTAACTTCAATTA+CGG | - | chr7_4:30574412-30574431 | Msa1149280:intron | 40.0% | |
| TCACTTGGCCATTACACAAA+AGG | - | chr7_4:30574620-30574639 | Msa1149280:CDS | 40.0% | |
| TGGCCATTACACAAAAGGAT+TGG | - | chr7_4:30574625-30574644 | Msa1149280:CDS | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | - | chr7_4:30574773-30574792 | Msa1149280:CDS | 40.0% | |
| AAGGGGCAATCAATTGCAAA+TGG | - | chr7_4:30574791-30574810 | Msa1149280:CDS | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | + | chr7_4:30574913-30574932 | None:intergenic | 40.0% | |
| !!! | CTCACCTAGCTTGCTTTTTG+AGG | - | chr7_4:30574240-30574259 | Msa1149280:intron | 45.0% |
| GTAGCTGCAAACACATCAGA+AGG | - | chr7_4:30574772-30574791 | Msa1149280:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | - | chr7_4:30574774-30574793 | Msa1149280:CDS | 45.0% | |
| CAACTATGGTTGGAGACTCA+TGG | - | chr7_4:30574867-30574886 | Msa1149280:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | + | chr7_4:30574903-30574922 | None:intergenic | 45.0% |
| !!! | CTCACCTAGCTTGCTTTTTG+AGG | - | chr7_4:30574240-30574259 | Msa1149280:intron | 45.0% |
| GTAGCTGCAAACACATCAGA+AGG | - | chr7_4:30574772-30574791 | Msa1149280:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | - | chr7_4:30574774-30574793 | Msa1149280:CDS | 45.0% | |
| CAACTATGGTTGGAGACTCA+TGG | - | chr7_4:30574867-30574886 | Msa1149280:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | + | chr7_4:30574903-30574922 | None:intergenic | 45.0% |
| !!! | TTAAAATTATCTTTTAAAAT+AGG | - | chr7_4:30574577-30574596 | Msa1149280:intron | 5.0% |
| !!! | TTAAAATTATCTTTTAAAAT+AGG | - | chr7_4:30574577-30574596 | Msa1149280:intron | 5.0% |
| CTCCACCTGGTTCATCAAGA+TGG | - | chr7_4:30573864-30573883 | Msa1149280:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | + | chr7_4:30573869-30573888 | None:intergenic | 50.0% | |
| CTCCACCTGGTTCATCAAGA+TGG | - | chr7_4:30573864-30573883 | Msa1149280:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | + | chr7_4:30573869-30573888 | None:intergenic | 50.0% | |
| GGGCTCCATCTTGATGAACC+AGG | + | chr7_4:30573872-30573891 | None:intergenic | 55.0% | |
| GGGCTCCATCTTGATGAACC+AGG | + | chr7_4:30573872-30573891 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 30573860 | 30574981 | 30573860 | ID=Msa1149280;Name=Msa1149280 |
| chr7_4 | mRNA | 30573860 | 30574981 | 30573860 | ID=Msa1149280-mRNA-1;Parent=Msa1149280;Name=Msa1149280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|205 |
| chr7_4 | exon | 30574580 | 30574981 | 30574580 | ID=Msa1149280-mRNA-1:exon:7432;Parent=Msa1149280-mRNA-1 |
| chr7_4 | exon | 30573860 | 30574075 | 30573860 | ID=Msa1149280-mRNA-1:exon:7431;Parent=Msa1149280-mRNA-1 |
| chr7_4 | CDS | 30574580 | 30574981 | 30574580 | ID=Msa1149280-mRNA-1:cds;Parent=Msa1149280-mRNA-1 |
| chr7_4 | CDS | 30573860 | 30574075 | 30573860 | ID=Msa1149280-mRNA-1:cds;Parent=Msa1149280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
