Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106060 | XP_003623058.1 | 93.689 | 206 | 11 | 2 | 1 | 204 | 1 | 206 | 4.99e-129 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106060 | sp|Q9SIB4|WOX3_ARATH | 85.135 | 74 | 11 | 0 | 1 | 74 | 1 | 74 | 3.90e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106060 | G7L3H0 | 93.689 | 206 | 11 | 2 | 1 | 204 | 1 | 206 | 2.39e-129 | 371 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1106060 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0124130 | Msa1106060 | 0.824395 | 8.261228e-54 | -8.615850e-47 |
| Msa0149140 | Msa1106060 | 0.801175 | 1.019429e-48 | -8.615850e-47 |
| Msa1106060 | Msa1149280 | 0.821536 | 3.832003e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106060 | MtrunA17_Chr7g0238431 | 93.689 | 206 | 11 | 2 | 1 | 204 | 1 | 206 | 4.59e-133 | 371 |
| Msa1106060 | MtrunA17_Chr4g0043891 | 71.429 | 70 | 20 | 0 | 1 | 70 | 1 | 70 | 8.04e-30 | 110 |
| Msa1106060 | MtrunA17_Chr1g0153171 | 71.642 | 67 | 19 | 0 | 4 | 70 | 86 | 152 | 1.32e-28 | 107 |
| Msa1106060 | MtrunA17_Chr8g0392991 | 74.627 | 67 | 17 | 0 | 6 | 72 | 94 | 160 | 2.18e-28 | 108 |
| Msa1106060 | MtrunA17_Chr5g0436661 | 69.841 | 63 | 19 | 0 | 8 | 70 | 33 | 95 | 1.01e-27 | 103 |
| Msa1106060 | MtrunA17_Chr4g0031341 | 65.625 | 64 | 22 | 0 | 8 | 71 | 25 | 88 | 2.03e-24 | 96.7 |
| Msa1106060 | MtrunA17_Chr5g0405351 | 67.692 | 65 | 20 | 1 | 6 | 69 | 28 | 92 | 5.28e-24 | 96.3 |
| Msa1106060 | MtrunA17_Chr8g0385441 | 74.074 | 54 | 14 | 0 | 19 | 72 | 93 | 146 | 1.66e-21 | 86.7 |
| Msa1106060 | MtrunA17_Chr3g0125111 | 72.222 | 54 | 15 | 0 | 19 | 72 | 91 | 144 | 5.95e-21 | 85.1 |
| Msa1106060 | MtrunA17_Chr2g0283141 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 2.92e-14 | 70.5 |
| Msa1106060 | MtrunA17_Chr7g0223471 | 39.286 | 84 | 51 | 0 | 2 | 85 | 41 | 124 | 5.56e-14 | 69.7 |
| Msa1106060 | MtrunA17_Chr1g0212511 | 46.774 | 62 | 33 | 0 | 8 | 69 | 85 | 146 | 9.11e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106060 | AT2G28610.1 | 85.135 | 74 | 11 | 0 | 1 | 74 | 1 | 74 | 3.96e-41 | 140 |
| Msa1106060 | AT3G18010.1 | 73.134 | 67 | 18 | 0 | 6 | 72 | 74 | 140 | 4.13e-28 | 108 |
| Msa1106060 | AT3G11260.1 | 54.444 | 90 | 38 | 2 | 8 | 95 | 24 | 112 | 1.42e-27 | 103 |
| Msa1106060 | AT1G46480.2 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 3.12e-27 | 102 |
| Msa1106060 | AT1G46480.1 | 67.164 | 67 | 22 | 0 | 4 | 70 | 86 | 152 | 1.99e-26 | 102 |
| Msa1106060 | AT5G05770.1 | 65.079 | 63 | 22 | 0 | 8 | 70 | 29 | 91 | 3.06e-26 | 98.2 |
| Msa1106060 | AT5G59340.1 | 74.194 | 62 | 16 | 0 | 6 | 67 | 12 | 73 | 4.12e-26 | 101 |
| Msa1106060 | AT2G17950.1 | 67.692 | 65 | 20 | 1 | 6 | 69 | 36 | 100 | 1.70e-23 | 95.1 |
| Msa1106060 | AT2G01500.1 | 74.545 | 55 | 14 | 0 | 8 | 62 | 61 | 115 | 1.09e-22 | 92.8 |
| Msa1106060 | AT5G45980.1 | 38.043 | 92 | 56 | 1 | 3 | 94 | 50 | 140 | 1.07e-14 | 71.6 |
| Msa1106060 | AT2G33880.1 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 4.61e-14 | 70.1 |
| Msa1106060 | AT2G33880.2 | 45.588 | 68 | 37 | 0 | 2 | 69 | 49 | 116 | 5.71e-14 | 70.1 |
| Msa1106060 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 8 | 67 | 33 | 92 | 3.28e-13 | 64.7 |
| Msa1106060 | AT1G20700.3 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 8.54e-13 | 64.7 |
| Msa1106060 | AT1G20700.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 95 | 154 | 1.07e-12 | 64.7 |
| Msa1106060 | AT4G35550.1 | 48.333 | 60 | 31 | 0 | 8 | 67 | 99 | 158 | 3.76e-12 | 63.9 |
Find 33 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACTCACCTTTCTTTCTA+TGG | 0.291926 | 7_3:-45284690 | Msa1106060:CDS |
| TCTTTCTATGGTAGAATAGA+AGG | 0.310281 | 7_3:-45284678 | Msa1106060:CDS |
| GAGATTGCATTCAACAACTA+TGG | 0.335765 | 7_3:-45283721 | Msa1106060:CDS |
| CAAAAGTACTACCAACAAAA+TGG | 0.345039 | 7_3:+45284493 | None:intergenic |
| TCTTCTCCATCACACTTTGT+TGG | 0.352167 | 7_3:+45283746 | None:intergenic |
| TGAACAACTTATGATCTTAG+AGG | 0.352994 | 7_3:-45284766 | Msa1106060:CDS |
| ATCATAAGTTGTTCAGTTGT+AGG | 0.386722 | 7_3:+45284774 | None:intergenic |
| TGCAACATGAAGGTGCTTCA+TGG | 0.419089 | 7_3:+45283674 | None:intergenic |
| AAGGGGCAATAAATTGCAAA+TGG | 0.472403 | 7_3:-45283783 | Msa1106060:CDS |
| TCTTGTGCATTAGATCCAAA+AGG | 0.476916 | 7_3:+45284465 | None:intergenic |
| TCATAAGTTGTTCAGTTGTA+GGG | 0.482629 | 7_3:+45284775 | None:intergenic |
| CTCCACCTGGTTCATCAAGA+TGG | 0.487034 | 7_3:-45284800 | Msa1106060:CDS |
| GGGATAGACAGAAGTTAAGA+AGG | 0.493019 | 7_3:-45284617 | Msa1106060:CDS |
| CTATTGGTTTCAGAATCATA+AGG | 0.495866 | 7_3:-45284643 | Msa1106060:CDS |
| CAACTATGGTTGGACACTCA+TGG | 0.499731 | 7_3:-45283707 | Msa1106060:CDS |
| CTATTCTACCATAGAAAGAA+AGG | 0.501141 | 7_3:+45284682 | None:intergenic |
| GGTTTCAGAATCATAAGGCT+AGG | 0.507758 | 7_3:-45284638 | Msa1106060:CDS |
| TTGCATTCAACAACTATGGT+TGG | 0.509929 | 7_3:-45283717 | Msa1106060:CDS |
| TTGATTCTTGTTGTTGTGAG+AGG | 0.523160 | 7_3:+45283622 | None:intergenic |
| TGCTGAATTTGAACAGCACT+AGG | 0.547085 | 7_3:+45284717 | None:intergenic |
| CTTGTGCATTAGATCCAAAA+GGG | 0.549702 | 7_3:+45284466 | None:intergenic |
| GTTTCAGAATCATAAGGCTA+GGG | 0.551754 | 7_3:-45284637 | Msa1106060:CDS |
| GCAATAAATTGCAAATGGAA+TGG | 0.553921 | 7_3:-45283778 | Msa1106060:CDS |
| GTAGCTGCAAACACATCAGA+AGG | 0.562740 | 7_3:-45283802 | Msa1106060:CDS |
| AGAGGTTTAGTGCAACATGA+AGG | 0.572055 | 7_3:+45283664 | None:intergenic |
| TTAGAGGAACTGTATAGAAG+TGG | 0.579089 | 7_3:-45284750 | Msa1106060:CDS |
| TAATAACCAACAAAGTGTGA+TGG | 0.592489 | 7_3:-45283752 | Msa1106060:CDS |
| CAATCAATAATGTCTCCACC+TGG | 0.600364 | 7_3:-45284813 | None:intergenic |
| AAAAGATCAAGAGTCTTGAG+AGG | 0.601753 | 7_3:+45283646 | None:intergenic |
| GGGCTCCATCTTGATGAACC+AGG | 0.608838 | 7_3:+45284795 | None:intergenic |
| TAGCTGCAAACACATCAGAA+GGG | 0.621365 | 7_3:-45283801 | Msa1106060:CDS |
| AGCTGCAAACACATCAGAAG+GGG | 0.625629 | 7_3:-45283800 | Msa1106060:CDS |
| CTCCATCTTGATGAACCAGG+TGG | 0.692416 | 7_3:+45284798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTAATACAAATATA+GGG | - | chr7_3:45284496-45284515 | Msa1106060:CDS | 10.0% |
| !! | ATTCAATTAATACAAATATA+GGG | - | chr7_3:45284496-45284515 | Msa1106060:CDS | 10.0% |
| !! | CATTCAATTAATACAAATAT+AGG | - | chr7_3:45284495-45284514 | Msa1106060:CDS | 15.0% |
| !! | CATTCAATTAATACAAATAT+AGG | - | chr7_3:45284495-45284514 | Msa1106060:CDS | 15.0% |
| !!! | AAGGAAAAAATGTTTTCTAT+TGG | - | chr7_3:45283760-45283779 | Msa1106060:CDS | 20.0% |
| !! | AGAAAAAGAAGAAGAAAAAT+AGG | + | chr7_3:45284074-45284093 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACTCT+TGG | - | chr7_3:45284103-45284122 | Msa1106060:intron | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_3:45284146-45284165 | Msa1106060:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | + | chr7_3:45284194-45284213 | None:intergenic | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_3:45284146-45284165 | Msa1106060:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | + | chr7_3:45284194-45284213 | None:intergenic | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | + | chr7_3:45284331-45284350 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | + | chr7_3:45284392-45284411 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | - | chr7_3:45284391-45284410 | Msa1106060:intron | 20.0% |
| !! | TCTTCATTTGATATGTATTT+AGG | - | chr7_3:45284589-45284608 | Msa1106060:CDS | 20.0% |
| !!! | AAGGAAAAAATGTTTTCTAT+TGG | - | chr7_3:45283760-45283779 | Msa1106060:CDS | 20.0% |
| !! | AGAAAAAGAAGAAGAAAAAT+AGG | + | chr7_3:45284074-45284093 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACTCT+TGG | - | chr7_3:45284103-45284122 | Msa1106060:intron | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_3:45284146-45284165 | Msa1106060:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | + | chr7_3:45284194-45284213 | None:intergenic | 20.0% |
| !!! | TAAATCATGGTTTTAAATTG+CGG | - | chr7_3:45284146-45284165 | Msa1106060:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | + | chr7_3:45284194-45284213 | None:intergenic | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | + | chr7_3:45284331-45284350 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | + | chr7_3:45284392-45284411 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | - | chr7_3:45284391-45284410 | Msa1106060:intron | 20.0% |
| !! | TCTTCATTTGATATGTATTT+AGG | - | chr7_3:45284589-45284608 | Msa1106060:CDS | 20.0% |
| !! | ATGATTAGTAACCATTTTGT+TGG | - | chr7_3:45283915-45283934 | Msa1106060:intron | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | + | chr7_3:45284064-45284083 | None:intergenic | 25.0% |
| ! | AAATTTCTCGACTTAAATCA+TGG | - | chr7_3:45284133-45284152 | Msa1106060:intron | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | - | chr7_3:45284188-45284207 | Msa1106060:intron | 25.0% |
| ! | AAATTTCTCGACTTAAATCA+TGG | - | chr7_3:45284133-45284152 | Msa1106060:intron | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | - | chr7_3:45284188-45284207 | Msa1106060:intron | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | - | chr7_3:45284397-45284416 | Msa1106060:intron | 25.0% |
| !! | ATGATTAGTAACCATTTTGT+TGG | - | chr7_3:45283915-45283934 | Msa1106060:intron | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | + | chr7_3:45284064-45284083 | None:intergenic | 25.0% |
| ! | AAATTTCTCGACTTAAATCA+TGG | - | chr7_3:45284133-45284152 | Msa1106060:intron | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | - | chr7_3:45284188-45284207 | Msa1106060:intron | 25.0% |
| ! | AAATTTCTCGACTTAAATCA+TGG | - | chr7_3:45284133-45284152 | Msa1106060:intron | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | - | chr7_3:45284188-45284207 | Msa1106060:intron | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | - | chr7_3:45284397-45284416 | Msa1106060:intron | 25.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | + | chr7_3:45283647-45283666 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | + | chr7_3:45283648-45283667 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | - | chr7_3:45283653-45283672 | Msa1106060:CDS | 30.0% | |
| CTATTCTACCATAGAAAGAA+AGG | + | chr7_3:45283740-45283759 | None:intergenic | 30.0% | |
| TCTTTCTATGGTAGAATAGA+AGG | - | chr7_3:45283741-45283760 | Msa1106060:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | - | chr7_3:45283776-45283795 | Msa1106060:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | + | chr7_3:45283929-45283948 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | - | chr7_3:45283927-45283946 | Msa1106060:intron | 30.0% |
| GCAATAAATTGCAAATGGAA+TGG | - | chr7_3:45284641-45284660 | Msa1106060:CDS | 30.0% | |
| TAATAACCAACAAAGTGTGA+TGG | - | chr7_3:45284667-45284686 | Msa1106060:CDS | 30.0% | |
| TCATAAGTTGTTCAGTTGTA+GGG | + | chr7_3:45283647-45283666 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | + | chr7_3:45283648-45283667 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | - | chr7_3:45283653-45283672 | Msa1106060:CDS | 30.0% | |
| CTATTCTACCATAGAAAGAA+AGG | + | chr7_3:45283740-45283759 | None:intergenic | 30.0% | |
| TCTTTCTATGGTAGAATAGA+AGG | - | chr7_3:45283741-45283760 | Msa1106060:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | - | chr7_3:45283776-45283795 | Msa1106060:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | + | chr7_3:45283929-45283948 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | - | chr7_3:45283927-45283946 | Msa1106060:intron | 30.0% |
| GCAATAAATTGCAAATGGAA+TGG | - | chr7_3:45284641-45284660 | Msa1106060:CDS | 30.0% | |
| TAATAACCAACAAAGTGTGA+TGG | - | chr7_3:45284667-45284686 | Msa1106060:CDS | 30.0% | |
| TTAGAGGAACTGTATAGAAG+TGG | - | chr7_3:45283669-45283688 | Msa1106060:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | - | chr7_3:45283729-45283748 | Msa1106060:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | - | chr7_3:45283782-45283801 | Msa1106060:CDS | 35.0% | |
| !! | AGTACTTTTGGTTACCCTTT+TGG | - | chr7_3:45283939-45283958 | Msa1106060:intron | 35.0% |
| CTTGTGCATTAGATCCAAAA+GGG | + | chr7_3:45283956-45283975 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | + | chr7_3:45283957-45283976 | None:intergenic | 35.0% | |
| CAAGCTAGGTGAGTTAAAAA+AGG | + | chr7_3:45283985-45284004 | None:intergenic | 35.0% | |
| ATTACCTCAAAAAGCAAGCT+AGG | + | chr7_3:45283999-45284018 | None:intergenic | 35.0% | |
| TGAATTCAAAGAATGCCACT+TGG | - | chr7_3:45284449-45284468 | Msa1106060:CDS | 35.0% | |
| ! | AATCCAATCCTTTTGTGCAA+TGG | + | chr7_3:45284475-45284494 | None:intergenic | 35.0% |
| AAGGGGCAATAAATTGCAAA+TGG | - | chr7_3:45284636-45284655 | Msa1106060:CDS | 35.0% | |
| GAGATTGCATTCAACAACTA+TGG | - | chr7_3:45284698-45284717 | Msa1106060:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | - | chr7_3:45284702-45284721 | Msa1106060:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | + | chr7_3:45284776-45284795 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGTGAG+AGG | + | chr7_3:45284800-45284819 | None:intergenic | 35.0% |
| TTAGAGGAACTGTATAGAAG+TGG | - | chr7_3:45283669-45283688 | Msa1106060:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | - | chr7_3:45283729-45283748 | Msa1106060:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | - | chr7_3:45283782-45283801 | Msa1106060:CDS | 35.0% | |
| !! | AGTACTTTTGGTTACCCTTT+TGG | - | chr7_3:45283939-45283958 | Msa1106060:intron | 35.0% |
| CTTGTGCATTAGATCCAAAA+GGG | + | chr7_3:45283956-45283975 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | + | chr7_3:45283957-45283976 | None:intergenic | 35.0% | |
| CAAGCTAGGTGAGTTAAAAA+AGG | + | chr7_3:45283985-45284004 | None:intergenic | 35.0% | |
| ATTACCTCAAAAAGCAAGCT+AGG | + | chr7_3:45283999-45284018 | None:intergenic | 35.0% | |
| TGAATTCAAAGAATGCCACT+TGG | - | chr7_3:45284449-45284468 | Msa1106060:CDS | 35.0% | |
| ! | AATCCAATCCTTTTGTGCAA+TGG | + | chr7_3:45284475-45284494 | None:intergenic | 35.0% |
| AAGGGGCAATAAATTGCAAA+TGG | - | chr7_3:45284636-45284655 | Msa1106060:CDS | 35.0% | |
| GAGATTGCATTCAACAACTA+TGG | - | chr7_3:45284698-45284717 | Msa1106060:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | - | chr7_3:45284702-45284721 | Msa1106060:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | + | chr7_3:45284776-45284795 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGTGAG+AGG | + | chr7_3:45284800-45284819 | None:intergenic | 35.0% |
| TGCTGAATTTGAACAGCACT+AGG | + | chr7_3:45283705-45283724 | None:intergenic | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | - | chr7_3:45283781-45283800 | Msa1106060:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | - | chr7_3:45283802-45283821 | Msa1106060:CDS | 40.0% | |
| GGCATCCGTAATTGAAGTTA+CGG | + | chr7_3:45284173-45284192 | None:intergenic | 40.0% | |
| ! | TGAGGTATCACAATCACTCT+TGG | - | chr7_3:45284206-45284225 | Msa1106060:intron | 40.0% |
| GGCATCCGTAATTGAAGTTA+CGG | + | chr7_3:45284173-45284192 | None:intergenic | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | - | chr7_3:45284618-45284637 | Msa1106060:CDS | 40.0% | |
| TCTTCTCCATCACACTTTGT+TGG | + | chr7_3:45284676-45284695 | None:intergenic | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | + | chr7_3:45284758-45284777 | None:intergenic | 40.0% | |
| TGCTGAATTTGAACAGCACT+AGG | + | chr7_3:45283705-45283724 | None:intergenic | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | - | chr7_3:45283781-45283800 | Msa1106060:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | - | chr7_3:45283802-45283821 | Msa1106060:CDS | 40.0% | |
| GGCATCCGTAATTGAAGTTA+CGG | + | chr7_3:45284173-45284192 | None:intergenic | 40.0% | |
| ! | TGAGGTATCACAATCACTCT+TGG | - | chr7_3:45284206-45284225 | Msa1106060:intron | 40.0% |
| GGCATCCGTAATTGAAGTTA+CGG | + | chr7_3:45284173-45284192 | None:intergenic | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | - | chr7_3:45284618-45284637 | Msa1106060:CDS | 40.0% | |
| TCTTCTCCATCACACTTTGT+TGG | + | chr7_3:45284676-45284695 | None:intergenic | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | + | chr7_3:45284758-45284777 | None:intergenic | 40.0% | |
| !!! | CTCACCTAGCTTGCTTTTTG+AGG | - | chr7_3:45283992-45284011 | Msa1106060:intron | 45.0% |
| GCGGTCCGTAACTTCAATTA+CGG | - | chr7_3:45284165-45284184 | Msa1106060:intron | 45.0% | |
| GCGGTCCGTAACTTCAATTA+CGG | - | chr7_3:45284165-45284184 | Msa1106060:intron | 45.0% | |
| TGGCCATTGCACAAAAGGAT+TGG | - | chr7_3:45284469-45284488 | Msa1106060:CDS | 45.0% | |
| GTAGCTGCAAACACATCAGA+AGG | - | chr7_3:45284617-45284636 | Msa1106060:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | - | chr7_3:45284619-45284638 | Msa1106060:CDS | 45.0% | |
| CAACTATGGTTGGACACTCA+TGG | - | chr7_3:45284712-45284731 | Msa1106060:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | + | chr7_3:45284748-45284767 | None:intergenic | 45.0% |
| !!! | CTCACCTAGCTTGCTTTTTG+AGG | - | chr7_3:45283992-45284011 | Msa1106060:intron | 45.0% |
| GCGGTCCGTAACTTCAATTA+CGG | - | chr7_3:45284165-45284184 | Msa1106060:intron | 45.0% | |
| GCGGTCCGTAACTTCAATTA+CGG | - | chr7_3:45284165-45284184 | Msa1106060:intron | 45.0% | |
| TGGCCATTGCACAAAAGGAT+TGG | - | chr7_3:45284469-45284488 | Msa1106060:CDS | 45.0% | |
| GTAGCTGCAAACACATCAGA+AGG | - | chr7_3:45284617-45284636 | Msa1106060:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | - | chr7_3:45284619-45284638 | Msa1106060:CDS | 45.0% | |
| CAACTATGGTTGGACACTCA+TGG | - | chr7_3:45284712-45284731 | Msa1106060:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | + | chr7_3:45284748-45284767 | None:intergenic | 45.0% |
| CTCCACCTGGTTCATCAAGA+TGG | - | chr7_3:45283619-45283638 | Msa1106060:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | + | chr7_3:45283624-45283643 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCAATGGCCAAG+TGG | + | chr7_3:45284467-45284486 | None:intergenic | 50.0% |
| CCACTTGGCCATTGCACAAA+AGG | - | chr7_3:45284464-45284483 | Msa1106060:CDS | 50.0% | |
| CTCCACCTGGTTCATCAAGA+TGG | - | chr7_3:45283619-45283638 | Msa1106060:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | + | chr7_3:45283624-45283643 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGCAATGGCCAAG+TGG | + | chr7_3:45284467-45284486 | None:intergenic | 50.0% |
| CCACTTGGCCATTGCACAAA+AGG | - | chr7_3:45284464-45284483 | Msa1106060:CDS | 50.0% | |
| GGGCTCCATCTTGATGAACC+AGG | + | chr7_3:45283627-45283646 | None:intergenic | 55.0% | |
| GGGCTCCATCTTGATGAACC+AGG | + | chr7_3:45283627-45283646 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 45283615 | 45284826 | 45283615 | ID=Msa1106060;Name=Msa1106060 |
| chr7_3 | mRNA | 45283615 | 45284826 | 45283615 | ID=Msa1106060-mRNA-1;Parent=Msa1106060;Name=Msa1106060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|204 |
| chr7_3 | exon | 45284428 | 45284826 | 45284428 | ID=Msa1106060-mRNA-1:exon:9314;Parent=Msa1106060-mRNA-1 |
| chr7_3 | exon | 45283615 | 45283830 | 45283615 | ID=Msa1106060-mRNA-1:exon:9313;Parent=Msa1106060-mRNA-1 |
| chr7_3 | CDS | 45284428 | 45284826 | 45284428 | ID=Msa1106060-mRNA-1:cds;Parent=Msa1106060-mRNA-1 |
| chr7_3 | CDS | 45283615 | 45283830 | 45283615 | ID=Msa1106060-mRNA-1:cds;Parent=Msa1106060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
