AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150180 MtrunA17_Chr5g0430481 91.220 205 8 2 18 212 61 265 1.44e-131 375
Msa1150180 MtrunA17_Chr3g0105371 64.835 182 52 4 42 211 47 228 4.35e-77 235
Msa1150180 MtrunA17_Chr3g0105351 61.905 189 60 4 35 211 16 204 2.51e-74 227
Msa1150180 MtrunA17_Chr1g0150451 38.686 137 75 3 81 210 85 219 5.14e-22 92.0
Msa1150180 MtrunA17_Chr4g0065141 39.216 153 69 5 79 212 91 238 7.05e-22 92.4
Msa1150180 MtrunA17_Chr1g0212961 37.226 137 74 4 81 210 103 234 3.59e-21 90.1
Msa1150180 MtrunA17_Chr3g0136711 36.496 137 78 3 81 210 42 176 7.79e-20 85.5
Msa1150180 MtrunA17_Chr3g0138281 37.255 153 72 5 78 211 87 234 1.35e-18 83.2
Msa1150180 MtrunA17_Chr3g0126511 35.036 137 80 2 81 210 102 236 3.91e-18 81.6
Msa1150180 MtrunA17_Chr8g0360351 39.394 132 69 4 86 208 48 177 1.85e-16 76.3
Msa1150180 MtrunA17_Chr1g0194191 32.484 157 84 6 78 212 84 240 2.97e-14 70.9
Msa1150180 MtrunA17_Chr2g0317021 36.220 127 72 3 86 205 99 223 3.75e-14 70.1
Msa1150180 MtrunA17_Chr5g0407161 34.247 146 80 4 81 212 93 236 4.38e-14 70.1
Msa1150180 MtrunA17_Chr1g0171571 30.345 145 82 3 81 209 395 536 6.98e-14 70.1
Msa1150180 MtrunA17_Chr2g0293811 31.343 134 78 2 93 212 89 222 1.16e-13 68.9
Msa1150180 MtrunA17_Chr3g0115851 33.835 133 77 5 86 211 48 176 1.37e-12 65.5
Msa1150180 MtrunA17_Chr4g0051661 34.483 145 81 7 73 211 156 292 1.88e-12 65.5
Msa1150180 MtrunA17_Chr5g0435721 31.544 149 81 3 81 209 200 347 1.88e-12 65.9
Msa1150180 MtrunA17_Chr3g0112291 29.139 151 86 3 81 210 100 250 3.90e-12 64.7
Msa1150180 MtrunA17_Chr4g0070871 33.871 124 64 4 104 210 253 375 4.38e-12 64.7
Msa1150180 MtrunA17_Chr8g0389921 36.364 121 65 3 102 210 196 316 1.05e-11 63.5
Msa1150180 MtrunA17_Chr3g0135961 29.677 155 78 6 79 210 268 414 1.22e-11 63.5
Msa1150180 MtrunA17_Chr1g0150781 31.818 132 62 4 104 210 290 418 4.23e-11 62.0
Msa1150180 MtrunA17_Chr2g0279151 32.593 135 76 5 79 203 40 169 4.44e-11 61.2
Msa1150180 MtrunA17_Chr1g0158781 36.735 147 70 5 80 210 120 259 5.00e-11 61.2
Msa1150180 MtrunA17_Chr7g0263281 30.469 128 69 5 103 211 70 196 6.93e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150180 AT1G07160.1 54.545 209 78 6 18 211 59 265 1.09e-64 205
Msa1150180 AT2G30020.1 52.915 223 78 7 16 211 60 282 3.94e-62 199
Msa1150180 AT2G40180.1 49.048 210 83 7 25 212 69 276 3.00e-47 160
Msa1150180 AT1G67820.2 44.149 188 83 6 43 211 42 226 2.27e-38 137
Msa1150180 AT1G67820.1 44.149 188 83 6 43 211 78 262 4.12e-38 137
Msa1150180 AT4G08260.1 43.902 123 44 4 86 204 1 102 1.47e-22 91.7
Msa1150180 AT4G31750.2 38.686 137 75 3 81 210 41 175 8.83e-21 88.6
Msa1150180 AT1G43900.1 36.691 139 75 4 81 210 131 265 9.21e-21 89.4
Msa1150180 AT4G31750.1 38.686 137 75 3 81 210 41 175 9.55e-21 88.6
Msa1150180 AT4G31750.3 38.686 137 75 3 81 210 41 175 9.55e-21 88.6
Msa1150180 AT5G10740.1 37.956 137 76 3 81 210 41 175 1.36e-20 89.0
Msa1150180 AT5G10740.2 37.956 137 76 3 81 210 41 175 1.36e-20 89.0
Msa1150180 AT2G33700.1 36.986 146 76 4 81 212 92 235 1.88e-19 85.9
Msa1150180 AT5G24940.1 35.507 138 80 3 80 210 40 175 4.81e-19 85.1
Msa1150180 AT3G27140.1 44.144 111 40 3 86 192 1 93 7.95e-19 82.4
Msa1150180 AT2G25620.1 33.133 166 86 5 62 211 85 241 3.39e-18 82.4
Msa1150180 AT2G25620.2 33.133 166 86 5 62 211 85 241 3.39e-18 82.4
Msa1150180 AT5G53140.1 34.058 138 82 4 81 211 109 244 1.37e-17 80.9
Msa1150180 AT5G53140.2 34.058 138 82 4 81 211 109 244 1.37e-17 80.9
Msa1150180 AT4G28400.2 36.090 133 74 4 86 211 49 177 3.28e-16 75.5
Msa1150180 AT4G28400.3 36.090 133 74 4 86 211 27 155 3.51e-16 75.5
Msa1150180 AT4G28400.1 36.090 133 74 4 86 211 49 177 4.77e-16 75.5
Msa1150180 AT2G20630.1 33.594 128 76 3 86 206 45 170 9.49e-16 74.7
Msa1150180 AT3G15260.2 38.636 132 70 5 86 210 55 182 1.19e-15 74.3
Msa1150180 AT3G15260.1 38.636 132 70 5 86 210 55 182 1.19e-15 74.3
Msa1150180 AT2G20630.2 33.594 128 76 3 86 206 45 170 1.29e-15 74.3
Msa1150180 AT1G48040.1 30.168 179 98 5 61 212 61 239 2.66e-14 71.2
Msa1150180 AT3G51470.1 32.192 146 82 5 79 212 78 218 2.90e-14 71.2
Msa1150180 AT3G51470.2 32.192 146 82 5 79 212 34 174 3.81e-14 70.5
Msa1150180 AT2G34740.3 34.400 125 73 4 86 203 97 219 8.24e-14 69.3
Msa1150180 AT2G34740.2 34.400 125 73 4 86 203 115 237 8.67e-14 69.7
Msa1150180 AT2G34740.1 34.400 125 73 4 86 203 101 223 9.20e-14 69.7
Msa1150180 AT2G05050.1 50.769 65 31 1 86 149 1 65 1.32e-13 67.4
Msa1150180 AT1G78200.5 33.088 136 77 5 86 211 1 132 2.90e-13 67.0
Msa1150180 AT1G78200.4 33.088 136 77 5 86 211 1 132 2.90e-13 67.0
Msa1150180 AT1G78200.1 32.394 142 82 5 80 211 40 177 4.32e-13 67.0
Msa1150180 AT1G78200.3 32.394 142 82 5 80 211 40 177 4.32e-13 67.0
Msa1150180 AT1G78200.2 32.394 142 82 5 80 211 40 177 4.32e-13 67.0
Msa1150180 AT2G29380.1 31.410 156 81 4 81 210 85 240 7.18e-13 67.0
Msa1150180 AT2G40860.3 30.345 145 81 3 81 209 400 540 2.36e-12 65.9
Msa1150180 AT2G40860.2 30.345 145 81 3 81 209 400 540 2.41e-12 65.9
Msa1150180 AT2G40860.1 30.345 145 81 3 81 209 400 540 2.63e-12 65.9
Msa1150180 AT5G57050.3 32.168 143 74 6 86 210 144 281 3.19e-12 65.1
Msa1150180 AT5G57050.2 33.600 125 62 5 104 210 120 241 3.57e-12 65.1
Msa1150180 AT5G57050.1 33.600 125 62 5 104 210 160 281 3.85e-12 65.1
Msa1150180 AT4G26080.1 30.573 157 83 6 81 211 136 292 4.14e-12 65.1
Msa1150180 AT2G40860.4 30.345 145 81 3 81 209 302 442 4.71e-12 65.1
Msa1150180 AT3G11410.1 28.750 160 84 3 81 210 112 271 6.23e-12 64.3
Msa1150180 AT1G18030.2 30.994 171 86 7 69 210 73 240 9.49e-12 63.5
Msa1150180 AT1G18030.1 30.994 171 86 7 69 210 73 240 9.96e-12 63.9
Msa1150180 AT1G22280.3 31.538 130 76 6 86 203 47 175 1.33e-11 63.2
Msa1150180 AT3G17250.1 27.389 157 90 3 80 212 125 281 2.05e-11 63.2

Find 54 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAGCTTCAGATGGATTA+TGG 0.192944 7_4:+33208424 Msa1150180:intron
TCTTCGTGGTGAAAACAATT+TGG 0.251614 7_4:+33207714 Msa1150180:CDS
AGGCTTAATATACCTGTTTC+TGG 0.253199 7_4:+33207556 Msa1150180:CDS
GAGAGGGAGGAAGGAGTATA+TGG 0.270402 7_4:+33207666 Msa1150180:intron
TTTACGTCAAACAAGGATTC+TGG 0.283699 7_4:+33207493 Msa1150180:CDS
TGCCGCAAATTCAGCGGCTT+TGG 0.344353 7_4:-33208067 None:intergenic
GTTGTGTAACAACATTCATT+AGG 0.348033 7_4:+33208220 Msa1150180:CDS
ATTAGCTTCAGATGGATTAT+GGG 0.376455 7_4:+33208425 Msa1150180:intron
TTCGGTAATCGTAGACAAAA+AGG 0.384988 7_4:-33207457 None:intergenic
GTTGTTGAGGCGGAGGGAGA+TGG 0.425322 7_4:+33207625 Msa1150180:CDS
TAACTTAGAAAATAATATCT+TGG 0.427509 7_4:+33208092 Msa1150180:CDS
TGCCAAAGCCGCTGAATTTG+CGG 0.431289 7_4:+33208065 Msa1150180:CDS
TTACGTCAAACAAGGATTCT+GGG 0.449937 7_4:+33207494 Msa1150180:CDS
TTATTGTAAGAGAGGGAGGA+AGG 0.455549 7_4:+33207657 Msa1150180:intron
ATGGAAGATCGTTATACAGC+TGG 0.461700 7_4:+33207685 Msa1150180:CDS
TTGTTGAGGCGGAGGGAGAT+GGG 0.484067 7_4:+33207626 Msa1150180:CDS
ACCTTCAAGGGAAGACGAAA+AGG 0.493186 7_4:+33208332 Msa1150180:CDS
GAGGGATGTTGTTGAGGCGG+AGG 0.493467 7_4:+33207618 Msa1150180:CDS
TTCAGATGGATTATGGGATA+AGG 0.496992 7_4:+33208431 Msa1150180:CDS
AACTTAGTTGTGTCTAATGC+TGG 0.499105 7_4:+33208249 Msa1150180:intron
ATCTGATCACCGACCTTCAA+GGG 0.504972 7_4:+33208320 Msa1150180:CDS
CATCTGATCACCGACCTTCA+AGG 0.507130 7_4:+33208319 Msa1150180:CDS
TTTCGTCTTCCCTTGAAGGT+CGG 0.508205 7_4:-33208329 None:intergenic
ACAGCTGGGGTTAATCTTCG+TGG 0.510384 7_4:+33207700 Msa1150180:CDS
AGAAAATAATATCTTGGATG+AGG 0.515644 7_4:+33208098 Msa1150180:CDS
CGACACCGTCTGCGGTGGCG+AGG 0.516352 7_4:+33207599 Msa1150180:CDS
ACGATTACCGAAACCACCCT+TGG 0.527056 7_4:+33207468 Msa1150180:CDS
CAGCGGCTTTGGCACCTCCA+TGG 0.527083 7_4:-33208056 None:intergenic
AGGGATGTTGTTGAGGCGGA+GGG 0.535503 7_4:+33207619 Msa1150180:CDS
TGGAAGATCGTTATACAGCT+GGG 0.545761 7_4:+33207686 Msa1150180:CDS
TTTGGCGTATTTGATGGCCA+TGG 0.545794 7_4:+33208039 Msa1150180:CDS
GTAACAACATTCATTAGGAA+TGG 0.546170 7_4:+33208225 Msa1150180:CDS
TGAAGAGGAAACGACCTACC+AGG 0.550346 7_4:+33207536 Msa1150180:CDS
AGAAACAGGTATATTAAGCC+TGG 0.552089 7_4:-33207554 None:intergenic
GACACCGTCTGCGGTGGCGA+GGG 0.554379 7_4:+33207600 Msa1150180:CDS
ACATCCCTCGCCACCGCAGA+CGG 0.561418 7_4:-33207604 None:intergenic
TGAACTCGGAATCGGTATTG+AGG 0.568588 7_4:-33208170 None:intergenic
GCCACCGCAGACGGTGTCGC+CGG 0.573609 7_4:-33207595 None:intergenic
ACAGGTATATTAAGCCTGGT+AGG 0.605164 7_4:-33207550 None:intergenic
TAGTAGAGGAGGGGTTGTTG+AGG 0.605389 7_4:+33208290 Msa1150180:CDS
GAGCGACGAAGATGATGTTG+AGG 0.609121 7_4:+33208128 Msa1150180:CDS
CTCCTCTACTAATAAAAGCA+CGG 0.610032 7_4:-33208278 None:intergenic
GGCGAGGGATGTTGTTGAGG+CGG 0.612440 7_4:+33207615 Msa1150180:CDS
CGACGAAGATGATGTTGAGG+AGG 0.613126 7_4:+33208131 Msa1150180:CDS
TCCGGCGACACCGTCTGCGG+TGG 0.616313 7_4:+33207594 Msa1150180:CDS
GTTATTTGCCGCAAATTCAG+CGG 0.620742 7_4:-33208073 None:intergenic
TTCTGGGTCGCAGAATGATG+CGG 0.622781 7_4:+33207510 Msa1150180:CDS
TGTTCCGGCGACACCGTCTG+CGG 0.623253 7_4:+33207591 Msa1150180:CDS
GGTGGCGAGGGATGTTGTTG+AGG 0.629842 7_4:+33207612 Msa1150180:CDS
GGAAGATCGTTATACAGCTG+GGG 0.671830 7_4:+33207687 Msa1150180:CDS
AAAGGACAGAATTGAGACCC+TGG 0.675506 7_4:+33208350 Msa1150180:CDS
GGTGAAGAAGGTGAAGAACA+CGG 0.675581 7_4:-33207436 None:intergenic
GTTGAGGAGGCAGTGAAGCG+CGG 0.685913 7_4:+33208144 Msa1150180:CDS
GGCGTATTTGATGGCCATGG+AGG 0.699437 7_4:+33208042 Msa1150180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATATATAATATTGATT+TGG + chr7_4:33207764-33207783 Msa1150180:intron 10.0%
!!! TTGAATATATAATATTGATT+TGG + chr7_4:33207764-33207783 Msa1150180:intron 10.0%
!!! ATATATAATATTGATTTGGT+TGG + chr7_4:33207768-33207787 Msa1150180:intron 15.0%
!! TAACTTAGAAAATAATATCT+TGG + chr7_4:33208092-33208111 Msa1150180:CDS 15.0%
!!! ATATATAATATTGATTTGGT+TGG + chr7_4:33207768-33207787 Msa1150180:intron 15.0%
!! TAACTTAGAAAATAATATCT+TGG + chr7_4:33208092-33208111 Msa1150180:CDS 15.0%
!! CACAATTCAAATTTAACTAA+TGG - chr7_4:33207857-33207876 None:intergenic 20.0%
!!! TAAATCTTTTTTCATGAACT+CGG - chr7_4:33208187-33208206 None:intergenic 20.0%
!! TTCATGAAAAAAGATTTACA+TGG + chr7_4:33208189-33208208 Msa1150180:CDS 20.0%
!!! TTTTTAATATTAGCTTCAGA+TGG + chr7_4:33208417-33208436 Msa1150180:intron 20.0%
!! CACAATTCAAATTTAACTAA+TGG - chr7_4:33207857-33207876 None:intergenic 20.0%
!!! TAAATCTTTTTTCATGAACT+CGG - chr7_4:33208187-33208206 None:intergenic 20.0%
!! TTCATGAAAAAAGATTTACA+TGG + chr7_4:33208189-33208208 Msa1150180:CDS 20.0%
!!! TTTTTAATATTAGCTTCAGA+TGG + chr7_4:33208417-33208436 Msa1150180:intron 20.0%
! TATTCTGTTTATTGTAAGAG+AGG + chr7_4:33207649-33207668 Msa1150180:intron 25.0%
! ATTCTGTTTATTGTAAGAGA+GGG + chr7_4:33207650-33207669 Msa1150180:intron 25.0%
! GAAGTTAAAAAGTTTGTCTT+AGG + chr7_4:33207826-33207845 Msa1150180:intron 25.0%
! GTAGATAGTTGAAACAAATT+AGG + chr7_4:33207876-33207895 Msa1150180:intron 25.0%
!! TTGTGTAAAATAACTTGTAC+AGG + chr7_4:33207989-33208008 Msa1150180:intron 25.0%
!!! GTTTATTTTGTGATAATTGC+AGG + chr7_4:33208011-33208030 Msa1150180:intron 25.0%
! AGAAAATAATATCTTGGATG+AGG + chr7_4:33208098-33208117 Msa1150180:CDS 25.0%
! ATGAAAAAAGATTTACATGG+TGG + chr7_4:33208192-33208211 Msa1150180:CDS 25.0%
! AATGGTAAGAAAATTTACCA+GGG - chr7_4:33208370-33208389 None:intergenic 25.0%
! AAAAAGAGAACTCAAAACAA+TGG - chr7_4:33208388-33208407 None:intergenic 25.0%
! TATTCTGTTTATTGTAAGAG+AGG + chr7_4:33207649-33207668 Msa1150180:intron 25.0%
! ATTCTGTTTATTGTAAGAGA+GGG + chr7_4:33207650-33207669 Msa1150180:intron 25.0%
! GAAGTTAAAAAGTTTGTCTT+AGG + chr7_4:33207826-33207845 Msa1150180:intron 25.0%
! GTAGATAGTTGAAACAAATT+AGG + chr7_4:33207876-33207895 Msa1150180:intron 25.0%
!! TTGTGTAAAATAACTTGTAC+AGG + chr7_4:33207989-33208008 Msa1150180:intron 25.0%
!!! GTTTATTTTGTGATAATTGC+AGG + chr7_4:33208011-33208030 Msa1150180:intron 25.0%
! AGAAAATAATATCTTGGATG+AGG + chr7_4:33208098-33208117 Msa1150180:CDS 25.0%
! ATGAAAAAAGATTTACATGG+TGG + chr7_4:33208192-33208211 Msa1150180:CDS 25.0%
! AATGGTAAGAAAATTTACCA+GGG - chr7_4:33208370-33208389 None:intergenic 25.0%
! AAAAAGAGAACTCAAAACAA+TGG - chr7_4:33208388-33208407 None:intergenic 25.0%
TTGTTTGACGTAAAAACCAA+GGG - chr7_4:33207487-33207506 None:intergenic 30.0%
!! GCTTGATGTTGATGATAAAT+TGG + chr7_4:33207949-33207968 Msa1150180:intron 30.0%
!!! TGATAATTGCAGGCTTTTTT+TGG + chr7_4:33208021-33208040 Msa1150180:intron 30.0%
!!! TTTTTTCATGAACTCGGAAT+CGG - chr7_4:33208181-33208200 None:intergenic 30.0%
GTTGTGTAACAACATTCATT+AGG + chr7_4:33208220-33208239 Msa1150180:CDS 30.0%
GTAACAACATTCATTAGGAA+TGG + chr7_4:33208225-33208244 Msa1150180:CDS 30.0%
CAATGGTAAGAAAATTTACC+AGG - chr7_4:33208371-33208390 None:intergenic 30.0%
!! TATTAGCTTCAGATGGATTA+TGG + chr7_4:33208424-33208443 Msa1150180:intron 30.0%
!! ATTAGCTTCAGATGGATTAT+GGG + chr7_4:33208425-33208444 Msa1150180:intron 30.0%
TTGTTTGACGTAAAAACCAA+GGG - chr7_4:33207487-33207506 None:intergenic 30.0%
!! GCTTGATGTTGATGATAAAT+TGG + chr7_4:33207949-33207968 Msa1150180:intron 30.0%
!!! TGATAATTGCAGGCTTTTTT+TGG + chr7_4:33208021-33208040 Msa1150180:intron 30.0%
!!! TTTTTTCATGAACTCGGAAT+CGG - chr7_4:33208181-33208200 None:intergenic 30.0%
GTTGTGTAACAACATTCATT+AGG + chr7_4:33208220-33208239 Msa1150180:CDS 30.0%
GTAACAACATTCATTAGGAA+TGG + chr7_4:33208225-33208244 Msa1150180:CDS 30.0%
CAATGGTAAGAAAATTTACC+AGG - chr7_4:33208371-33208390 None:intergenic 30.0%
!! TATTAGCTTCAGATGGATTA+TGG + chr7_4:33208424-33208443 Msa1150180:intron 30.0%
!! ATTAGCTTCAGATGGATTAT+GGG + chr7_4:33208425-33208444 Msa1150180:intron 30.0%
TTCGGTAATCGTAGACAAAA+AGG - chr7_4:33207460-33207479 None:intergenic 35.0%
CTTGTTTGACGTAAAAACCA+AGG - chr7_4:33207488-33207507 None:intergenic 35.0%
!! CTTGGTTTTTACGTCAAACA+AGG + chr7_4:33207486-33207505 Msa1150180:CDS 35.0%
TTTACGTCAAACAAGGATTC+TGG + chr7_4:33207493-33207512 Msa1150180:CDS 35.0%
TTACGTCAAACAAGGATTCT+GGG + chr7_4:33207494-33207513 Msa1150180:CDS 35.0%
AGAAACAGGTATATTAAGCC+TGG - chr7_4:33207557-33207576 None:intergenic 35.0%
AGGCTTAATATACCTGTTTC+TGG + chr7_4:33207556-33207575 Msa1150180:CDS 35.0%
TCTTCGTGGTGAAAACAATT+TGG + chr7_4:33207714-33207733 Msa1150180:CDS 35.0%
!!! GCTTTTTTTGGCGTATTTGA+TGG + chr7_4:33208033-33208052 Msa1150180:CDS 35.0%
AACTTAGTTGTGTCTAATGC+TGG + chr7_4:33208249-33208268 Msa1150180:intron 35.0%
CTCCTCTACTAATAAAAGCA+CGG - chr7_4:33208281-33208300 None:intergenic 35.0%
! GTGCTTTTATTAGTAGAGGA+GGG + chr7_4:33208280-33208299 Msa1150180:CDS 35.0%
! TGCTTTTATTAGTAGAGGAG+GGG + chr7_4:33208281-33208300 Msa1150180:CDS 35.0%
!! TTCAGATGGATTATGGGATA+AGG + chr7_4:33208431-33208450 Msa1150180:CDS 35.0%
TTCGGTAATCGTAGACAAAA+AGG - chr7_4:33207460-33207479 None:intergenic 35.0%
CTTGTTTGACGTAAAAACCA+AGG - chr7_4:33207488-33207507 None:intergenic 35.0%
!! CTTGGTTTTTACGTCAAACA+AGG + chr7_4:33207486-33207505 Msa1150180:CDS 35.0%
TTTACGTCAAACAAGGATTC+TGG + chr7_4:33207493-33207512 Msa1150180:CDS 35.0%
TTACGTCAAACAAGGATTCT+GGG + chr7_4:33207494-33207513 Msa1150180:CDS 35.0%
AGAAACAGGTATATTAAGCC+TGG - chr7_4:33207557-33207576 None:intergenic 35.0%
AGGCTTAATATACCTGTTTC+TGG + chr7_4:33207556-33207575 Msa1150180:CDS 35.0%
TCTTCGTGGTGAAAACAATT+TGG + chr7_4:33207714-33207733 Msa1150180:CDS 35.0%
!!! GCTTTTTTTGGCGTATTTGA+TGG + chr7_4:33208033-33208052 Msa1150180:CDS 35.0%
AACTTAGTTGTGTCTAATGC+TGG + chr7_4:33208249-33208268 Msa1150180:intron 35.0%
CTCCTCTACTAATAAAAGCA+CGG - chr7_4:33208281-33208300 None:intergenic 35.0%
! GTGCTTTTATTAGTAGAGGA+GGG + chr7_4:33208280-33208299 Msa1150180:CDS 35.0%
! TGCTTTTATTAGTAGAGGAG+GGG + chr7_4:33208281-33208300 Msa1150180:CDS 35.0%
!! TTCAGATGGATTATGGGATA+AGG + chr7_4:33208431-33208450 Msa1150180:CDS 35.0%
CGTAGACAAAAAGGTGAAGA+AGG - chr7_4:33207451-33207470 None:intergenic 40.0%
GTAAAAACCAAGGGTGGTTT+CGG - chr7_4:33207478-33207497 None:intergenic 40.0%
TTTGACGTAAAAACCAAGGG+TGG - chr7_4:33207484-33207503 None:intergenic 40.0%
!!! AGAATGATGCGGTTTTGAAG+AGG + chr7_4:33207521-33207540 Msa1150180:CDS 40.0%
ACAGGTATATTAAGCCTGGT+AGG - chr7_4:33207553-33207572 None:intergenic 40.0%
! CAAAAAGCATGTCCAGAAAC+AGG - chr7_4:33207571-33207590 None:intergenic 40.0%
!! TGGACATGCTTTTTGTGTTC+CGG + chr7_4:33207576-33207595 Msa1150180:CDS 40.0%
CTGTTTATTGTAAGAGAGGG+AGG + chr7_4:33207653-33207672 Msa1150180:intron 40.0%
TTATTGTAAGAGAGGGAGGA+AGG + chr7_4:33207657-33207676 Msa1150180:intron 40.0%
ATGGAAGATCGTTATACAGC+TGG + chr7_4:33207685-33207704 Msa1150180:CDS 40.0%
TGGAAGATCGTTATACAGCT+GGG + chr7_4:33207686-33207705 Msa1150180:CDS 40.0%
GTTATTTGCCGCAAATTCAG+CGG - chr7_4:33208076-33208095 None:intergenic 40.0%
! TGCCGTGCTTTTATTAGTAG+AGG + chr7_4:33208276-33208295 Msa1150180:CDS 40.0%
! CGTGCTTTTATTAGTAGAGG+AGG + chr7_4:33208279-33208298 Msa1150180:CDS 40.0%
CGTAGACAAAAAGGTGAAGA+AGG - chr7_4:33207451-33207470 None:intergenic 40.0%
GTAAAAACCAAGGGTGGTTT+CGG - chr7_4:33207478-33207497 None:intergenic 40.0%
TTTGACGTAAAAACCAAGGG+TGG - chr7_4:33207484-33207503 None:intergenic 40.0%
!!! AGAATGATGCGGTTTTGAAG+AGG + chr7_4:33207521-33207540 Msa1150180:CDS 40.0%
ACAGGTATATTAAGCCTGGT+AGG - chr7_4:33207553-33207572 None:intergenic 40.0%
! CAAAAAGCATGTCCAGAAAC+AGG - chr7_4:33207571-33207590 None:intergenic 40.0%
!! TGGACATGCTTTTTGTGTTC+CGG + chr7_4:33207576-33207595 Msa1150180:CDS 40.0%
CTGTTTATTGTAAGAGAGGG+AGG + chr7_4:33207653-33207672 Msa1150180:intron 40.0%
TTATTGTAAGAGAGGGAGGA+AGG + chr7_4:33207657-33207676 Msa1150180:intron 40.0%
ATGGAAGATCGTTATACAGC+TGG + chr7_4:33207685-33207704 Msa1150180:CDS 40.0%
TGGAAGATCGTTATACAGCT+GGG + chr7_4:33207686-33207705 Msa1150180:CDS 40.0%
GTTATTTGCCGCAAATTCAG+CGG - chr7_4:33208076-33208095 None:intergenic 40.0%
! TGCCGTGCTTTTATTAGTAG+AGG + chr7_4:33208276-33208295 Msa1150180:CDS 40.0%
! CGTGCTTTTATTAGTAGAGG+AGG + chr7_4:33208279-33208298 Msa1150180:CDS 40.0%
GGTGAAGAAGGTGAAGAACA+CGG - chr7_4:33207439-33207458 None:intergenic 45.0%
GGAAGATCGTTATACAGCTG+GGG + chr7_4:33207687-33207706 Msa1150180:CDS 45.0%
! TTTGGCGTATTTGATGGCCA+TGG + chr7_4:33208039-33208058 Msa1150180:CDS 45.0%
TGAACTCGGAATCGGTATTG+AGG - chr7_4:33208173-33208192 None:intergenic 45.0%
ATCTGATCACCGACCTTCAA+GGG + chr7_4:33208320-33208339 Msa1150180:CDS 45.0%
TTTCGTCTTCCCTTGAAGGT+CGG - chr7_4:33208332-33208351 None:intergenic 45.0%
ACCTTCAAGGGAAGACGAAA+AGG + chr7_4:33208332-33208351 Msa1150180:CDS 45.0%
! TCCTTTTCGTCTTCCCTTGA+AGG - chr7_4:33208336-33208355 None:intergenic 45.0%
AAAGGACAGAATTGAGACCC+TGG + chr7_4:33208350-33208369 Msa1150180:CDS 45.0%
GGTGAAGAAGGTGAAGAACA+CGG - chr7_4:33207439-33207458 None:intergenic 45.0%
GGAAGATCGTTATACAGCTG+GGG + chr7_4:33207687-33207706 Msa1150180:CDS 45.0%
! TTTGGCGTATTTGATGGCCA+TGG + chr7_4:33208039-33208058 Msa1150180:CDS 45.0%
TGAACTCGGAATCGGTATTG+AGG - chr7_4:33208173-33208192 None:intergenic 45.0%
ATCTGATCACCGACCTTCAA+GGG + chr7_4:33208320-33208339 Msa1150180:CDS 45.0%
TTTCGTCTTCCCTTGAAGGT+CGG - chr7_4:33208332-33208351 None:intergenic 45.0%
ACCTTCAAGGGAAGACGAAA+AGG + chr7_4:33208332-33208351 Msa1150180:CDS 45.0%
! TCCTTTTCGTCTTCCCTTGA+AGG - chr7_4:33208336-33208355 None:intergenic 45.0%
AAAGGACAGAATTGAGACCC+TGG + chr7_4:33208350-33208369 Msa1150180:CDS 45.0%
ACGATTACCGAAACCACCCT+TGG + chr7_4:33207468-33207487 Msa1150180:CDS 50.0%
TTCTGGGTCGCAGAATGATG+CGG + chr7_4:33207510-33207529 Msa1150180:CDS 50.0%
TGAAGAGGAAACGACCTACC+AGG + chr7_4:33207536-33207555 Msa1150180:CDS 50.0%
! GAGAGGGAGGAAGGAGTATA+TGG + chr7_4:33207666-33207685 Msa1150180:intron 50.0%
ACAGCTGGGGTTAATCTTCG+TGG + chr7_4:33207700-33207719 Msa1150180:CDS 50.0%
TGCCAAAGCCGCTGAATTTG+CGG + chr7_4:33208065-33208084 Msa1150180:CDS 50.0%
GAGCGACGAAGATGATGTTG+AGG + chr7_4:33208128-33208147 Msa1150180:CDS 50.0%
CGACGAAGATGATGTTGAGG+AGG + chr7_4:33208131-33208150 Msa1150180:CDS 50.0%
TAGTAGAGGAGGGGTTGTTG+AGG + chr7_4:33208290-33208309 Msa1150180:CDS 50.0%
CATCTGATCACCGACCTTCA+AGG + chr7_4:33208319-33208338 Msa1150180:CDS 50.0%
ACGATTACCGAAACCACCCT+TGG + chr7_4:33207468-33207487 Msa1150180:CDS 50.0%
TTCTGGGTCGCAGAATGATG+CGG + chr7_4:33207510-33207529 Msa1150180:CDS 50.0%
TGAAGAGGAAACGACCTACC+AGG + chr7_4:33207536-33207555 Msa1150180:CDS 50.0%
! GAGAGGGAGGAAGGAGTATA+TGG + chr7_4:33207666-33207685 Msa1150180:intron 50.0%
ACAGCTGGGGTTAATCTTCG+TGG + chr7_4:33207700-33207719 Msa1150180:CDS 50.0%
TGCCAAAGCCGCTGAATTTG+CGG + chr7_4:33208065-33208084 Msa1150180:CDS 50.0%
GAGCGACGAAGATGATGTTG+AGG + chr7_4:33208128-33208147 Msa1150180:CDS 50.0%
CGACGAAGATGATGTTGAGG+AGG + chr7_4:33208131-33208150 Msa1150180:CDS 50.0%
TAGTAGAGGAGGGGTTGTTG+AGG + chr7_4:33208290-33208309 Msa1150180:CDS 50.0%
CATCTGATCACCGACCTTCA+AGG + chr7_4:33208319-33208338 Msa1150180:CDS 50.0%
AGGGATGTTGTTGAGGCGGA+GGG + chr7_4:33207619-33207638 Msa1150180:CDS 55.0%
TTGTTGAGGCGGAGGGAGAT+GGG + chr7_4:33207626-33207645 Msa1150180:CDS 55.0%
! GGCGTATTTGATGGCCATGG+AGG + chr7_4:33208042-33208061 Msa1150180:CDS 55.0%
TGCCGCAAATTCAGCGGCTT+TGG - chr7_4:33208070-33208089 None:intergenic 55.0%
AGGGATGTTGTTGAGGCGGA+GGG + chr7_4:33207619-33207638 Msa1150180:CDS 55.0%
TTGTTGAGGCGGAGGGAGAT+GGG + chr7_4:33207626-33207645 Msa1150180:CDS 55.0%
! GGCGTATTTGATGGCCATGG+AGG + chr7_4:33208042-33208061 Msa1150180:CDS 55.0%
TGCCGCAAATTCAGCGGCTT+TGG - chr7_4:33208070-33208089 None:intergenic 55.0%
GGTGGCGAGGGATGTTGTTG+AGG + chr7_4:33207612-33207631 Msa1150180:CDS 60.0%
GGCGAGGGATGTTGTTGAGG+CGG + chr7_4:33207615-33207634 Msa1150180:CDS 60.0%
GAGGGATGTTGTTGAGGCGG+AGG + chr7_4:33207618-33207637 Msa1150180:CDS 60.0%
GTTGTTGAGGCGGAGGGAGA+TGG + chr7_4:33207625-33207644 Msa1150180:CDS 60.0%
GTTGAGGAGGCAGTGAAGCG+CGG + chr7_4:33208144-33208163 Msa1150180:CDS 60.0%
GGTGGCGAGGGATGTTGTTG+AGG + chr7_4:33207612-33207631 Msa1150180:CDS 60.0%
GGCGAGGGATGTTGTTGAGG+CGG + chr7_4:33207615-33207634 Msa1150180:CDS 60.0%
GAGGGATGTTGTTGAGGCGG+AGG + chr7_4:33207618-33207637 Msa1150180:CDS 60.0%
GTTGTTGAGGCGGAGGGAGA+TGG + chr7_4:33207625-33207644 Msa1150180:CDS 60.0%
GTTGAGGAGGCAGTGAAGCG+CGG + chr7_4:33208144-33208163 Msa1150180:CDS 60.0%
TGTTCCGGCGACACCGTCTG+CGG + chr7_4:33207591-33207610 Msa1150180:CDS 65.0%
ACATCCCTCGCCACCGCAGA+CGG - chr7_4:33207607-33207626 None:intergenic 65.0%
! CAGCGGCTTTGGCACCTCCA+TGG - chr7_4:33208059-33208078 None:intergenic 65.0%
TGTTCCGGCGACACCGTCTG+CGG + chr7_4:33207591-33207610 Msa1150180:CDS 65.0%
ACATCCCTCGCCACCGCAGA+CGG - chr7_4:33207607-33207626 None:intergenic 65.0%
! CAGCGGCTTTGGCACCTCCA+TGG - chr7_4:33208059-33208078 None:intergenic 65.0%
GACACCGTCTGCGGTGGCGA+GGG + chr7_4:33207600-33207619 Msa1150180:CDS 70.0%
GACACCGTCTGCGGTGGCGA+GGG + chr7_4:33207600-33207619 Msa1150180:CDS 70.0%
TCCGGCGACACCGTCTGCGG+TGG + chr7_4:33207594-33207613 Msa1150180:CDS 75.0%
!! GCCACCGCAGACGGTGTCGC+CGG - chr7_4:33207598-33207617 None:intergenic 75.0%
CGACACCGTCTGCGGTGGCG+AGG + chr7_4:33207599-33207618 Msa1150180:CDS 75.0%
TCCGGCGACACCGTCTGCGG+TGG + chr7_4:33207594-33207613 Msa1150180:CDS 75.0%
!! GCCACCGCAGACGGTGTCGC+CGG - chr7_4:33207598-33207617 None:intergenic 75.0%
CGACACCGTCTGCGGTGGCG+AGG + chr7_4:33207599-33207618 Msa1150180:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 33207409 33208456 33207409 ID=Msa1150180;Name=Msa1150180
chr7_4 mRNA 33207409 33208456 33207409 ID=Msa1150180-mRNA-1;Parent=Msa1150180;Name=Msa1150180-mRNA-1;_AED=0.43;_eAED=0.45;_QI=0|0.25|0|1|1|1|5|0|220
chr7_4 exon 33207409 33207647 33207409 ID=Msa1150180-mRNA-1:exon:7921;Parent=Msa1150180-mRNA-1
chr7_4 exon 33207669 33207735 33207669 ID=Msa1150180-mRNA-1:exon:7922;Parent=Msa1150180-mRNA-1
chr7_4 exon 33208033 33208246 33208033 ID=Msa1150180-mRNA-1:exon:7923;Parent=Msa1150180-mRNA-1
chr7_4 exon 33208256 33208371 33208256 ID=Msa1150180-mRNA-1:exon:7924;Parent=Msa1150180-mRNA-1
chr7_4 exon 33208430 33208456 33208430 ID=Msa1150180-mRNA-1:exon:7925;Parent=Msa1150180-mRNA-1
chr7_4 CDS 33207409 33207647 33207409 ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1
chr7_4 CDS 33207669 33207735 33207669 ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1
chr7_4 CDS 33208033 33208246 33208033 ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1
chr7_4 CDS 33208256 33208371 33208256 ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1
chr7_4 CDS 33208430 33208456 33208430 ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1
Gene Sequence

>Msa1150180

ATGGGAAGTGAGAACAGAACGCGTTCTCCGTGTTCTTCACCTTCTTCACCTTTTTGTCTACGATTACCGAAACCACCCTTGGTTTTTACGTCAAACAAGGATTCTGGGTCGCAGAATGATGCGGTTTTGAAGAGGAAACGACCTACCAGGCTTAATATACCTGTTTCTGGACATGCTTTTTGTGTTCCGGCGACACCGTCTGCGGTGGCGAGGGATGTTGTTGAGGCGGAGGGAGATGGAGGGAGGAAGGAGTATATGGAAGATCGTTATACAGCTGGGGTTAATCTTCGTGGTGAAAACAATTTGGCTTTTTTTGGCGTATTTGATGGCCATGGAGGTGCCAAAGCCGCTGAATTTGCGGCAAATAACTTAGAAAATAATATCTTGGATGAGGTGATCATGAGCGACGAAGATGATGTTGAGGAGGCAGTGAAGCGCGGTTACCTCAATACCGATTCCGAGTTCATGAAAAAAGATTTACATGGTGGCTCTTGTTGTGTAACAACATTCATTAGGAATGTTGTGTCTAATGCTGGTGATTGCCGTGCTTTTATTAGTAGAGGAGGGGTTGTTGAGGCACTAACATCTGATCACCGACCTTCAAGGGAAGACGAAAAGGACAGAATTGAGACCCTGCTTCAGATGGATTATGGGATAAGGTAA

Protein sequence

>Msa1150180

MGSENRTRSPCSSPSSPFCLRLPKPPLVFTSNKDSGSQNDAVLKRKRPTRLNIPVSGHAFCVPATPSAVARDVVEAEGDGGRKEYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFAANNLENNILDEVIMSDEDDVEEAVKRGYLNTDSEFMKKDLHGGSCCVTTFIRNVVSNAGDCRAFISRGGVVEALTSDHRPSREDEKDRIETLLQMDYGIR*