Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150180 | KEH28177.1 | 89.904 | 208 | 11 | 2 | 18 | 215 | 61 | 268 | 2.28e-128 | 374 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150180 | sp|Q8RX37|P2C02_ARATH | 54.545 | 209 | 78 | 6 | 18 | 211 | 59 | 265 | 1.07e-63 | 205 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150180 | A0A072UER2 | 89.904 | 208 | 11 | 2 | 18 | 215 | 61 | 268 | 1.09e-128 | 374 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0163040 | Msa1150180 | 0.817730 | 2.833806e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150180 | MtrunA17_Chr5g0430481 | 91.220 | 205 | 8 | 2 | 18 | 212 | 61 | 265 | 1.44e-131 | 375 |
Msa1150180 | MtrunA17_Chr3g0105371 | 64.835 | 182 | 52 | 4 | 42 | 211 | 47 | 228 | 4.35e-77 | 235 |
Msa1150180 | MtrunA17_Chr3g0105351 | 61.905 | 189 | 60 | 4 | 35 | 211 | 16 | 204 | 2.51e-74 | 227 |
Msa1150180 | MtrunA17_Chr1g0150451 | 38.686 | 137 | 75 | 3 | 81 | 210 | 85 | 219 | 5.14e-22 | 92.0 |
Msa1150180 | MtrunA17_Chr4g0065141 | 39.216 | 153 | 69 | 5 | 79 | 212 | 91 | 238 | 7.05e-22 | 92.4 |
Msa1150180 | MtrunA17_Chr1g0212961 | 37.226 | 137 | 74 | 4 | 81 | 210 | 103 | 234 | 3.59e-21 | 90.1 |
Msa1150180 | MtrunA17_Chr3g0136711 | 36.496 | 137 | 78 | 3 | 81 | 210 | 42 | 176 | 7.79e-20 | 85.5 |
Msa1150180 | MtrunA17_Chr3g0138281 | 37.255 | 153 | 72 | 5 | 78 | 211 | 87 | 234 | 1.35e-18 | 83.2 |
Msa1150180 | MtrunA17_Chr3g0126511 | 35.036 | 137 | 80 | 2 | 81 | 210 | 102 | 236 | 3.91e-18 | 81.6 |
Msa1150180 | MtrunA17_Chr8g0360351 | 39.394 | 132 | 69 | 4 | 86 | 208 | 48 | 177 | 1.85e-16 | 76.3 |
Msa1150180 | MtrunA17_Chr1g0194191 | 32.484 | 157 | 84 | 6 | 78 | 212 | 84 | 240 | 2.97e-14 | 70.9 |
Msa1150180 | MtrunA17_Chr2g0317021 | 36.220 | 127 | 72 | 3 | 86 | 205 | 99 | 223 | 3.75e-14 | 70.1 |
Msa1150180 | MtrunA17_Chr5g0407161 | 34.247 | 146 | 80 | 4 | 81 | 212 | 93 | 236 | 4.38e-14 | 70.1 |
Msa1150180 | MtrunA17_Chr1g0171571 | 30.345 | 145 | 82 | 3 | 81 | 209 | 395 | 536 | 6.98e-14 | 70.1 |
Msa1150180 | MtrunA17_Chr2g0293811 | 31.343 | 134 | 78 | 2 | 93 | 212 | 89 | 222 | 1.16e-13 | 68.9 |
Msa1150180 | MtrunA17_Chr3g0115851 | 33.835 | 133 | 77 | 5 | 86 | 211 | 48 | 176 | 1.37e-12 | 65.5 |
Msa1150180 | MtrunA17_Chr4g0051661 | 34.483 | 145 | 81 | 7 | 73 | 211 | 156 | 292 | 1.88e-12 | 65.5 |
Msa1150180 | MtrunA17_Chr5g0435721 | 31.544 | 149 | 81 | 3 | 81 | 209 | 200 | 347 | 1.88e-12 | 65.9 |
Msa1150180 | MtrunA17_Chr3g0112291 | 29.139 | 151 | 86 | 3 | 81 | 210 | 100 | 250 | 3.90e-12 | 64.7 |
Msa1150180 | MtrunA17_Chr4g0070871 | 33.871 | 124 | 64 | 4 | 104 | 210 | 253 | 375 | 4.38e-12 | 64.7 |
Msa1150180 | MtrunA17_Chr8g0389921 | 36.364 | 121 | 65 | 3 | 102 | 210 | 196 | 316 | 1.05e-11 | 63.5 |
Msa1150180 | MtrunA17_Chr3g0135961 | 29.677 | 155 | 78 | 6 | 79 | 210 | 268 | 414 | 1.22e-11 | 63.5 |
Msa1150180 | MtrunA17_Chr1g0150781 | 31.818 | 132 | 62 | 4 | 104 | 210 | 290 | 418 | 4.23e-11 | 62.0 |
Msa1150180 | MtrunA17_Chr2g0279151 | 32.593 | 135 | 76 | 5 | 79 | 203 | 40 | 169 | 4.44e-11 | 61.2 |
Msa1150180 | MtrunA17_Chr1g0158781 | 36.735 | 147 | 70 | 5 | 80 | 210 | 120 | 259 | 5.00e-11 | 61.2 |
Msa1150180 | MtrunA17_Chr7g0263281 | 30.469 | 128 | 69 | 5 | 103 | 211 | 70 | 196 | 6.93e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1150180 | AT1G07160.1 | 54.545 | 209 | 78 | 6 | 18 | 211 | 59 | 265 | 1.09e-64 | 205 |
Msa1150180 | AT2G30020.1 | 52.915 | 223 | 78 | 7 | 16 | 211 | 60 | 282 | 3.94e-62 | 199 |
Msa1150180 | AT2G40180.1 | 49.048 | 210 | 83 | 7 | 25 | 212 | 69 | 276 | 3.00e-47 | 160 |
Msa1150180 | AT1G67820.2 | 44.149 | 188 | 83 | 6 | 43 | 211 | 42 | 226 | 2.27e-38 | 137 |
Msa1150180 | AT1G67820.1 | 44.149 | 188 | 83 | 6 | 43 | 211 | 78 | 262 | 4.12e-38 | 137 |
Msa1150180 | AT4G08260.1 | 43.902 | 123 | 44 | 4 | 86 | 204 | 1 | 102 | 1.47e-22 | 91.7 |
Msa1150180 | AT4G31750.2 | 38.686 | 137 | 75 | 3 | 81 | 210 | 41 | 175 | 8.83e-21 | 88.6 |
Msa1150180 | AT1G43900.1 | 36.691 | 139 | 75 | 4 | 81 | 210 | 131 | 265 | 9.21e-21 | 89.4 |
Msa1150180 | AT4G31750.1 | 38.686 | 137 | 75 | 3 | 81 | 210 | 41 | 175 | 9.55e-21 | 88.6 |
Msa1150180 | AT4G31750.3 | 38.686 | 137 | 75 | 3 | 81 | 210 | 41 | 175 | 9.55e-21 | 88.6 |
Msa1150180 | AT5G10740.1 | 37.956 | 137 | 76 | 3 | 81 | 210 | 41 | 175 | 1.36e-20 | 89.0 |
Msa1150180 | AT5G10740.2 | 37.956 | 137 | 76 | 3 | 81 | 210 | 41 | 175 | 1.36e-20 | 89.0 |
Msa1150180 | AT2G33700.1 | 36.986 | 146 | 76 | 4 | 81 | 212 | 92 | 235 | 1.88e-19 | 85.9 |
Msa1150180 | AT5G24940.1 | 35.507 | 138 | 80 | 3 | 80 | 210 | 40 | 175 | 4.81e-19 | 85.1 |
Msa1150180 | AT3G27140.1 | 44.144 | 111 | 40 | 3 | 86 | 192 | 1 | 93 | 7.95e-19 | 82.4 |
Msa1150180 | AT2G25620.1 | 33.133 | 166 | 86 | 5 | 62 | 211 | 85 | 241 | 3.39e-18 | 82.4 |
Msa1150180 | AT2G25620.2 | 33.133 | 166 | 86 | 5 | 62 | 211 | 85 | 241 | 3.39e-18 | 82.4 |
Msa1150180 | AT5G53140.1 | 34.058 | 138 | 82 | 4 | 81 | 211 | 109 | 244 | 1.37e-17 | 80.9 |
Msa1150180 | AT5G53140.2 | 34.058 | 138 | 82 | 4 | 81 | 211 | 109 | 244 | 1.37e-17 | 80.9 |
Msa1150180 | AT4G28400.2 | 36.090 | 133 | 74 | 4 | 86 | 211 | 49 | 177 | 3.28e-16 | 75.5 |
Msa1150180 | AT4G28400.3 | 36.090 | 133 | 74 | 4 | 86 | 211 | 27 | 155 | 3.51e-16 | 75.5 |
Msa1150180 | AT4G28400.1 | 36.090 | 133 | 74 | 4 | 86 | 211 | 49 | 177 | 4.77e-16 | 75.5 |
Msa1150180 | AT2G20630.1 | 33.594 | 128 | 76 | 3 | 86 | 206 | 45 | 170 | 9.49e-16 | 74.7 |
Msa1150180 | AT3G15260.2 | 38.636 | 132 | 70 | 5 | 86 | 210 | 55 | 182 | 1.19e-15 | 74.3 |
Msa1150180 | AT3G15260.1 | 38.636 | 132 | 70 | 5 | 86 | 210 | 55 | 182 | 1.19e-15 | 74.3 |
Msa1150180 | AT2G20630.2 | 33.594 | 128 | 76 | 3 | 86 | 206 | 45 | 170 | 1.29e-15 | 74.3 |
Msa1150180 | AT1G48040.1 | 30.168 | 179 | 98 | 5 | 61 | 212 | 61 | 239 | 2.66e-14 | 71.2 |
Msa1150180 | AT3G51470.1 | 32.192 | 146 | 82 | 5 | 79 | 212 | 78 | 218 | 2.90e-14 | 71.2 |
Msa1150180 | AT3G51470.2 | 32.192 | 146 | 82 | 5 | 79 | 212 | 34 | 174 | 3.81e-14 | 70.5 |
Msa1150180 | AT2G34740.3 | 34.400 | 125 | 73 | 4 | 86 | 203 | 97 | 219 | 8.24e-14 | 69.3 |
Msa1150180 | AT2G34740.2 | 34.400 | 125 | 73 | 4 | 86 | 203 | 115 | 237 | 8.67e-14 | 69.7 |
Msa1150180 | AT2G34740.1 | 34.400 | 125 | 73 | 4 | 86 | 203 | 101 | 223 | 9.20e-14 | 69.7 |
Msa1150180 | AT2G05050.1 | 50.769 | 65 | 31 | 1 | 86 | 149 | 1 | 65 | 1.32e-13 | 67.4 |
Msa1150180 | AT1G78200.5 | 33.088 | 136 | 77 | 5 | 86 | 211 | 1 | 132 | 2.90e-13 | 67.0 |
Msa1150180 | AT1G78200.4 | 33.088 | 136 | 77 | 5 | 86 | 211 | 1 | 132 | 2.90e-13 | 67.0 |
Msa1150180 | AT1G78200.1 | 32.394 | 142 | 82 | 5 | 80 | 211 | 40 | 177 | 4.32e-13 | 67.0 |
Msa1150180 | AT1G78200.3 | 32.394 | 142 | 82 | 5 | 80 | 211 | 40 | 177 | 4.32e-13 | 67.0 |
Msa1150180 | AT1G78200.2 | 32.394 | 142 | 82 | 5 | 80 | 211 | 40 | 177 | 4.32e-13 | 67.0 |
Msa1150180 | AT2G29380.1 | 31.410 | 156 | 81 | 4 | 81 | 210 | 85 | 240 | 7.18e-13 | 67.0 |
Msa1150180 | AT2G40860.3 | 30.345 | 145 | 81 | 3 | 81 | 209 | 400 | 540 | 2.36e-12 | 65.9 |
Msa1150180 | AT2G40860.2 | 30.345 | 145 | 81 | 3 | 81 | 209 | 400 | 540 | 2.41e-12 | 65.9 |
Msa1150180 | AT2G40860.1 | 30.345 | 145 | 81 | 3 | 81 | 209 | 400 | 540 | 2.63e-12 | 65.9 |
Msa1150180 | AT5G57050.3 | 32.168 | 143 | 74 | 6 | 86 | 210 | 144 | 281 | 3.19e-12 | 65.1 |
Msa1150180 | AT5G57050.2 | 33.600 | 125 | 62 | 5 | 104 | 210 | 120 | 241 | 3.57e-12 | 65.1 |
Msa1150180 | AT5G57050.1 | 33.600 | 125 | 62 | 5 | 104 | 210 | 160 | 281 | 3.85e-12 | 65.1 |
Msa1150180 | AT4G26080.1 | 30.573 | 157 | 83 | 6 | 81 | 211 | 136 | 292 | 4.14e-12 | 65.1 |
Msa1150180 | AT2G40860.4 | 30.345 | 145 | 81 | 3 | 81 | 209 | 302 | 442 | 4.71e-12 | 65.1 |
Msa1150180 | AT3G11410.1 | 28.750 | 160 | 84 | 3 | 81 | 210 | 112 | 271 | 6.23e-12 | 64.3 |
Msa1150180 | AT1G18030.2 | 30.994 | 171 | 86 | 7 | 69 | 210 | 73 | 240 | 9.49e-12 | 63.5 |
Msa1150180 | AT1G18030.1 | 30.994 | 171 | 86 | 7 | 69 | 210 | 73 | 240 | 9.96e-12 | 63.9 |
Msa1150180 | AT1G22280.3 | 31.538 | 130 | 76 | 6 | 86 | 203 | 47 | 175 | 1.33e-11 | 63.2 |
Msa1150180 | AT3G17250.1 | 27.389 | 157 | 90 | 3 | 80 | 212 | 125 | 281 | 2.05e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTAGCTTCAGATGGATTA+TGG | 0.192944 | 7_4:+33208424 | Msa1150180:intron |
TCTTCGTGGTGAAAACAATT+TGG | 0.251614 | 7_4:+33207714 | Msa1150180:CDS |
AGGCTTAATATACCTGTTTC+TGG | 0.253199 | 7_4:+33207556 | Msa1150180:CDS |
GAGAGGGAGGAAGGAGTATA+TGG | 0.270402 | 7_4:+33207666 | Msa1150180:intron |
TTTACGTCAAACAAGGATTC+TGG | 0.283699 | 7_4:+33207493 | Msa1150180:CDS |
TGCCGCAAATTCAGCGGCTT+TGG | 0.344353 | 7_4:-33208067 | None:intergenic |
GTTGTGTAACAACATTCATT+AGG | 0.348033 | 7_4:+33208220 | Msa1150180:CDS |
ATTAGCTTCAGATGGATTAT+GGG | 0.376455 | 7_4:+33208425 | Msa1150180:intron |
TTCGGTAATCGTAGACAAAA+AGG | 0.384988 | 7_4:-33207457 | None:intergenic |
GTTGTTGAGGCGGAGGGAGA+TGG | 0.425322 | 7_4:+33207625 | Msa1150180:CDS |
TAACTTAGAAAATAATATCT+TGG | 0.427509 | 7_4:+33208092 | Msa1150180:CDS |
TGCCAAAGCCGCTGAATTTG+CGG | 0.431289 | 7_4:+33208065 | Msa1150180:CDS |
TTACGTCAAACAAGGATTCT+GGG | 0.449937 | 7_4:+33207494 | Msa1150180:CDS |
TTATTGTAAGAGAGGGAGGA+AGG | 0.455549 | 7_4:+33207657 | Msa1150180:intron |
ATGGAAGATCGTTATACAGC+TGG | 0.461700 | 7_4:+33207685 | Msa1150180:CDS |
TTGTTGAGGCGGAGGGAGAT+GGG | 0.484067 | 7_4:+33207626 | Msa1150180:CDS |
ACCTTCAAGGGAAGACGAAA+AGG | 0.493186 | 7_4:+33208332 | Msa1150180:CDS |
GAGGGATGTTGTTGAGGCGG+AGG | 0.493467 | 7_4:+33207618 | Msa1150180:CDS |
TTCAGATGGATTATGGGATA+AGG | 0.496992 | 7_4:+33208431 | Msa1150180:CDS |
AACTTAGTTGTGTCTAATGC+TGG | 0.499105 | 7_4:+33208249 | Msa1150180:intron |
ATCTGATCACCGACCTTCAA+GGG | 0.504972 | 7_4:+33208320 | Msa1150180:CDS |
CATCTGATCACCGACCTTCA+AGG | 0.507130 | 7_4:+33208319 | Msa1150180:CDS |
TTTCGTCTTCCCTTGAAGGT+CGG | 0.508205 | 7_4:-33208329 | None:intergenic |
ACAGCTGGGGTTAATCTTCG+TGG | 0.510384 | 7_4:+33207700 | Msa1150180:CDS |
AGAAAATAATATCTTGGATG+AGG | 0.515644 | 7_4:+33208098 | Msa1150180:CDS |
CGACACCGTCTGCGGTGGCG+AGG | 0.516352 | 7_4:+33207599 | Msa1150180:CDS |
ACGATTACCGAAACCACCCT+TGG | 0.527056 | 7_4:+33207468 | Msa1150180:CDS |
CAGCGGCTTTGGCACCTCCA+TGG | 0.527083 | 7_4:-33208056 | None:intergenic |
AGGGATGTTGTTGAGGCGGA+GGG | 0.535503 | 7_4:+33207619 | Msa1150180:CDS |
TGGAAGATCGTTATACAGCT+GGG | 0.545761 | 7_4:+33207686 | Msa1150180:CDS |
TTTGGCGTATTTGATGGCCA+TGG | 0.545794 | 7_4:+33208039 | Msa1150180:CDS |
GTAACAACATTCATTAGGAA+TGG | 0.546170 | 7_4:+33208225 | Msa1150180:CDS |
TGAAGAGGAAACGACCTACC+AGG | 0.550346 | 7_4:+33207536 | Msa1150180:CDS |
AGAAACAGGTATATTAAGCC+TGG | 0.552089 | 7_4:-33207554 | None:intergenic |
GACACCGTCTGCGGTGGCGA+GGG | 0.554379 | 7_4:+33207600 | Msa1150180:CDS |
ACATCCCTCGCCACCGCAGA+CGG | 0.561418 | 7_4:-33207604 | None:intergenic |
TGAACTCGGAATCGGTATTG+AGG | 0.568588 | 7_4:-33208170 | None:intergenic |
GCCACCGCAGACGGTGTCGC+CGG | 0.573609 | 7_4:-33207595 | None:intergenic |
ACAGGTATATTAAGCCTGGT+AGG | 0.605164 | 7_4:-33207550 | None:intergenic |
TAGTAGAGGAGGGGTTGTTG+AGG | 0.605389 | 7_4:+33208290 | Msa1150180:CDS |
GAGCGACGAAGATGATGTTG+AGG | 0.609121 | 7_4:+33208128 | Msa1150180:CDS |
CTCCTCTACTAATAAAAGCA+CGG | 0.610032 | 7_4:-33208278 | None:intergenic |
GGCGAGGGATGTTGTTGAGG+CGG | 0.612440 | 7_4:+33207615 | Msa1150180:CDS |
CGACGAAGATGATGTTGAGG+AGG | 0.613126 | 7_4:+33208131 | Msa1150180:CDS |
TCCGGCGACACCGTCTGCGG+TGG | 0.616313 | 7_4:+33207594 | Msa1150180:CDS |
GTTATTTGCCGCAAATTCAG+CGG | 0.620742 | 7_4:-33208073 | None:intergenic |
TTCTGGGTCGCAGAATGATG+CGG | 0.622781 | 7_4:+33207510 | Msa1150180:CDS |
TGTTCCGGCGACACCGTCTG+CGG | 0.623253 | 7_4:+33207591 | Msa1150180:CDS |
GGTGGCGAGGGATGTTGTTG+AGG | 0.629842 | 7_4:+33207612 | Msa1150180:CDS |
GGAAGATCGTTATACAGCTG+GGG | 0.671830 | 7_4:+33207687 | Msa1150180:CDS |
AAAGGACAGAATTGAGACCC+TGG | 0.675506 | 7_4:+33208350 | Msa1150180:CDS |
GGTGAAGAAGGTGAAGAACA+CGG | 0.675581 | 7_4:-33207436 | None:intergenic |
GTTGAGGAGGCAGTGAAGCG+CGG | 0.685913 | 7_4:+33208144 | Msa1150180:CDS |
GGCGTATTTGATGGCCATGG+AGG | 0.699437 | 7_4:+33208042 | Msa1150180:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGAATATATAATATTGATT+TGG | + | chr7_4:33207764-33207783 | Msa1150180:intron | 10.0% |
!!! | TTGAATATATAATATTGATT+TGG | + | chr7_4:33207764-33207783 | Msa1150180:intron | 10.0% |
!!! | ATATATAATATTGATTTGGT+TGG | + | chr7_4:33207768-33207787 | Msa1150180:intron | 15.0% |
!! | TAACTTAGAAAATAATATCT+TGG | + | chr7_4:33208092-33208111 | Msa1150180:CDS | 15.0% |
!!! | ATATATAATATTGATTTGGT+TGG | + | chr7_4:33207768-33207787 | Msa1150180:intron | 15.0% |
!! | TAACTTAGAAAATAATATCT+TGG | + | chr7_4:33208092-33208111 | Msa1150180:CDS | 15.0% |
!! | CACAATTCAAATTTAACTAA+TGG | - | chr7_4:33207857-33207876 | None:intergenic | 20.0% |
!!! | TAAATCTTTTTTCATGAACT+CGG | - | chr7_4:33208187-33208206 | None:intergenic | 20.0% |
!! | TTCATGAAAAAAGATTTACA+TGG | + | chr7_4:33208189-33208208 | Msa1150180:CDS | 20.0% |
!!! | TTTTTAATATTAGCTTCAGA+TGG | + | chr7_4:33208417-33208436 | Msa1150180:intron | 20.0% |
!! | CACAATTCAAATTTAACTAA+TGG | - | chr7_4:33207857-33207876 | None:intergenic | 20.0% |
!!! | TAAATCTTTTTTCATGAACT+CGG | - | chr7_4:33208187-33208206 | None:intergenic | 20.0% |
!! | TTCATGAAAAAAGATTTACA+TGG | + | chr7_4:33208189-33208208 | Msa1150180:CDS | 20.0% |
!!! | TTTTTAATATTAGCTTCAGA+TGG | + | chr7_4:33208417-33208436 | Msa1150180:intron | 20.0% |
! | TATTCTGTTTATTGTAAGAG+AGG | + | chr7_4:33207649-33207668 | Msa1150180:intron | 25.0% |
! | ATTCTGTTTATTGTAAGAGA+GGG | + | chr7_4:33207650-33207669 | Msa1150180:intron | 25.0% |
! | GAAGTTAAAAAGTTTGTCTT+AGG | + | chr7_4:33207826-33207845 | Msa1150180:intron | 25.0% |
! | GTAGATAGTTGAAACAAATT+AGG | + | chr7_4:33207876-33207895 | Msa1150180:intron | 25.0% |
!! | TTGTGTAAAATAACTTGTAC+AGG | + | chr7_4:33207989-33208008 | Msa1150180:intron | 25.0% |
!!! | GTTTATTTTGTGATAATTGC+AGG | + | chr7_4:33208011-33208030 | Msa1150180:intron | 25.0% |
! | AGAAAATAATATCTTGGATG+AGG | + | chr7_4:33208098-33208117 | Msa1150180:CDS | 25.0% |
! | ATGAAAAAAGATTTACATGG+TGG | + | chr7_4:33208192-33208211 | Msa1150180:CDS | 25.0% |
! | AATGGTAAGAAAATTTACCA+GGG | - | chr7_4:33208370-33208389 | None:intergenic | 25.0% |
! | AAAAAGAGAACTCAAAACAA+TGG | - | chr7_4:33208388-33208407 | None:intergenic | 25.0% |
! | TATTCTGTTTATTGTAAGAG+AGG | + | chr7_4:33207649-33207668 | Msa1150180:intron | 25.0% |
! | ATTCTGTTTATTGTAAGAGA+GGG | + | chr7_4:33207650-33207669 | Msa1150180:intron | 25.0% |
! | GAAGTTAAAAAGTTTGTCTT+AGG | + | chr7_4:33207826-33207845 | Msa1150180:intron | 25.0% |
! | GTAGATAGTTGAAACAAATT+AGG | + | chr7_4:33207876-33207895 | Msa1150180:intron | 25.0% |
!! | TTGTGTAAAATAACTTGTAC+AGG | + | chr7_4:33207989-33208008 | Msa1150180:intron | 25.0% |
!!! | GTTTATTTTGTGATAATTGC+AGG | + | chr7_4:33208011-33208030 | Msa1150180:intron | 25.0% |
! | AGAAAATAATATCTTGGATG+AGG | + | chr7_4:33208098-33208117 | Msa1150180:CDS | 25.0% |
! | ATGAAAAAAGATTTACATGG+TGG | + | chr7_4:33208192-33208211 | Msa1150180:CDS | 25.0% |
! | AATGGTAAGAAAATTTACCA+GGG | - | chr7_4:33208370-33208389 | None:intergenic | 25.0% |
! | AAAAAGAGAACTCAAAACAA+TGG | - | chr7_4:33208388-33208407 | None:intergenic | 25.0% |
TTGTTTGACGTAAAAACCAA+GGG | - | chr7_4:33207487-33207506 | None:intergenic | 30.0% | |
!! | GCTTGATGTTGATGATAAAT+TGG | + | chr7_4:33207949-33207968 | Msa1150180:intron | 30.0% |
!!! | TGATAATTGCAGGCTTTTTT+TGG | + | chr7_4:33208021-33208040 | Msa1150180:intron | 30.0% |
!!! | TTTTTTCATGAACTCGGAAT+CGG | - | chr7_4:33208181-33208200 | None:intergenic | 30.0% |
GTTGTGTAACAACATTCATT+AGG | + | chr7_4:33208220-33208239 | Msa1150180:CDS | 30.0% | |
GTAACAACATTCATTAGGAA+TGG | + | chr7_4:33208225-33208244 | Msa1150180:CDS | 30.0% | |
CAATGGTAAGAAAATTTACC+AGG | - | chr7_4:33208371-33208390 | None:intergenic | 30.0% | |
!! | TATTAGCTTCAGATGGATTA+TGG | + | chr7_4:33208424-33208443 | Msa1150180:intron | 30.0% |
!! | ATTAGCTTCAGATGGATTAT+GGG | + | chr7_4:33208425-33208444 | Msa1150180:intron | 30.0% |
TTGTTTGACGTAAAAACCAA+GGG | - | chr7_4:33207487-33207506 | None:intergenic | 30.0% | |
!! | GCTTGATGTTGATGATAAAT+TGG | + | chr7_4:33207949-33207968 | Msa1150180:intron | 30.0% |
!!! | TGATAATTGCAGGCTTTTTT+TGG | + | chr7_4:33208021-33208040 | Msa1150180:intron | 30.0% |
!!! | TTTTTTCATGAACTCGGAAT+CGG | - | chr7_4:33208181-33208200 | None:intergenic | 30.0% |
GTTGTGTAACAACATTCATT+AGG | + | chr7_4:33208220-33208239 | Msa1150180:CDS | 30.0% | |
GTAACAACATTCATTAGGAA+TGG | + | chr7_4:33208225-33208244 | Msa1150180:CDS | 30.0% | |
CAATGGTAAGAAAATTTACC+AGG | - | chr7_4:33208371-33208390 | None:intergenic | 30.0% | |
!! | TATTAGCTTCAGATGGATTA+TGG | + | chr7_4:33208424-33208443 | Msa1150180:intron | 30.0% |
!! | ATTAGCTTCAGATGGATTAT+GGG | + | chr7_4:33208425-33208444 | Msa1150180:intron | 30.0% |
TTCGGTAATCGTAGACAAAA+AGG | - | chr7_4:33207460-33207479 | None:intergenic | 35.0% | |
CTTGTTTGACGTAAAAACCA+AGG | - | chr7_4:33207488-33207507 | None:intergenic | 35.0% | |
!! | CTTGGTTTTTACGTCAAACA+AGG | + | chr7_4:33207486-33207505 | Msa1150180:CDS | 35.0% |
TTTACGTCAAACAAGGATTC+TGG | + | chr7_4:33207493-33207512 | Msa1150180:CDS | 35.0% | |
TTACGTCAAACAAGGATTCT+GGG | + | chr7_4:33207494-33207513 | Msa1150180:CDS | 35.0% | |
AGAAACAGGTATATTAAGCC+TGG | - | chr7_4:33207557-33207576 | None:intergenic | 35.0% | |
AGGCTTAATATACCTGTTTC+TGG | + | chr7_4:33207556-33207575 | Msa1150180:CDS | 35.0% | |
TCTTCGTGGTGAAAACAATT+TGG | + | chr7_4:33207714-33207733 | Msa1150180:CDS | 35.0% | |
!!! | GCTTTTTTTGGCGTATTTGA+TGG | + | chr7_4:33208033-33208052 | Msa1150180:CDS | 35.0% |
AACTTAGTTGTGTCTAATGC+TGG | + | chr7_4:33208249-33208268 | Msa1150180:intron | 35.0% | |
CTCCTCTACTAATAAAAGCA+CGG | - | chr7_4:33208281-33208300 | None:intergenic | 35.0% | |
! | GTGCTTTTATTAGTAGAGGA+GGG | + | chr7_4:33208280-33208299 | Msa1150180:CDS | 35.0% |
! | TGCTTTTATTAGTAGAGGAG+GGG | + | chr7_4:33208281-33208300 | Msa1150180:CDS | 35.0% |
!! | TTCAGATGGATTATGGGATA+AGG | + | chr7_4:33208431-33208450 | Msa1150180:CDS | 35.0% |
TTCGGTAATCGTAGACAAAA+AGG | - | chr7_4:33207460-33207479 | None:intergenic | 35.0% | |
CTTGTTTGACGTAAAAACCA+AGG | - | chr7_4:33207488-33207507 | None:intergenic | 35.0% | |
!! | CTTGGTTTTTACGTCAAACA+AGG | + | chr7_4:33207486-33207505 | Msa1150180:CDS | 35.0% |
TTTACGTCAAACAAGGATTC+TGG | + | chr7_4:33207493-33207512 | Msa1150180:CDS | 35.0% | |
TTACGTCAAACAAGGATTCT+GGG | + | chr7_4:33207494-33207513 | Msa1150180:CDS | 35.0% | |
AGAAACAGGTATATTAAGCC+TGG | - | chr7_4:33207557-33207576 | None:intergenic | 35.0% | |
AGGCTTAATATACCTGTTTC+TGG | + | chr7_4:33207556-33207575 | Msa1150180:CDS | 35.0% | |
TCTTCGTGGTGAAAACAATT+TGG | + | chr7_4:33207714-33207733 | Msa1150180:CDS | 35.0% | |
!!! | GCTTTTTTTGGCGTATTTGA+TGG | + | chr7_4:33208033-33208052 | Msa1150180:CDS | 35.0% |
AACTTAGTTGTGTCTAATGC+TGG | + | chr7_4:33208249-33208268 | Msa1150180:intron | 35.0% | |
CTCCTCTACTAATAAAAGCA+CGG | - | chr7_4:33208281-33208300 | None:intergenic | 35.0% | |
! | GTGCTTTTATTAGTAGAGGA+GGG | + | chr7_4:33208280-33208299 | Msa1150180:CDS | 35.0% |
! | TGCTTTTATTAGTAGAGGAG+GGG | + | chr7_4:33208281-33208300 | Msa1150180:CDS | 35.0% |
!! | TTCAGATGGATTATGGGATA+AGG | + | chr7_4:33208431-33208450 | Msa1150180:CDS | 35.0% |
CGTAGACAAAAAGGTGAAGA+AGG | - | chr7_4:33207451-33207470 | None:intergenic | 40.0% | |
GTAAAAACCAAGGGTGGTTT+CGG | - | chr7_4:33207478-33207497 | None:intergenic | 40.0% | |
TTTGACGTAAAAACCAAGGG+TGG | - | chr7_4:33207484-33207503 | None:intergenic | 40.0% | |
!!! | AGAATGATGCGGTTTTGAAG+AGG | + | chr7_4:33207521-33207540 | Msa1150180:CDS | 40.0% |
ACAGGTATATTAAGCCTGGT+AGG | - | chr7_4:33207553-33207572 | None:intergenic | 40.0% | |
! | CAAAAAGCATGTCCAGAAAC+AGG | - | chr7_4:33207571-33207590 | None:intergenic | 40.0% |
!! | TGGACATGCTTTTTGTGTTC+CGG | + | chr7_4:33207576-33207595 | Msa1150180:CDS | 40.0% |
CTGTTTATTGTAAGAGAGGG+AGG | + | chr7_4:33207653-33207672 | Msa1150180:intron | 40.0% | |
TTATTGTAAGAGAGGGAGGA+AGG | + | chr7_4:33207657-33207676 | Msa1150180:intron | 40.0% | |
ATGGAAGATCGTTATACAGC+TGG | + | chr7_4:33207685-33207704 | Msa1150180:CDS | 40.0% | |
TGGAAGATCGTTATACAGCT+GGG | + | chr7_4:33207686-33207705 | Msa1150180:CDS | 40.0% | |
GTTATTTGCCGCAAATTCAG+CGG | - | chr7_4:33208076-33208095 | None:intergenic | 40.0% | |
! | TGCCGTGCTTTTATTAGTAG+AGG | + | chr7_4:33208276-33208295 | Msa1150180:CDS | 40.0% |
! | CGTGCTTTTATTAGTAGAGG+AGG | + | chr7_4:33208279-33208298 | Msa1150180:CDS | 40.0% |
CGTAGACAAAAAGGTGAAGA+AGG | - | chr7_4:33207451-33207470 | None:intergenic | 40.0% | |
GTAAAAACCAAGGGTGGTTT+CGG | - | chr7_4:33207478-33207497 | None:intergenic | 40.0% | |
TTTGACGTAAAAACCAAGGG+TGG | - | chr7_4:33207484-33207503 | None:intergenic | 40.0% | |
!!! | AGAATGATGCGGTTTTGAAG+AGG | + | chr7_4:33207521-33207540 | Msa1150180:CDS | 40.0% |
ACAGGTATATTAAGCCTGGT+AGG | - | chr7_4:33207553-33207572 | None:intergenic | 40.0% | |
! | CAAAAAGCATGTCCAGAAAC+AGG | - | chr7_4:33207571-33207590 | None:intergenic | 40.0% |
!! | TGGACATGCTTTTTGTGTTC+CGG | + | chr7_4:33207576-33207595 | Msa1150180:CDS | 40.0% |
CTGTTTATTGTAAGAGAGGG+AGG | + | chr7_4:33207653-33207672 | Msa1150180:intron | 40.0% | |
TTATTGTAAGAGAGGGAGGA+AGG | + | chr7_4:33207657-33207676 | Msa1150180:intron | 40.0% | |
ATGGAAGATCGTTATACAGC+TGG | + | chr7_4:33207685-33207704 | Msa1150180:CDS | 40.0% | |
TGGAAGATCGTTATACAGCT+GGG | + | chr7_4:33207686-33207705 | Msa1150180:CDS | 40.0% | |
GTTATTTGCCGCAAATTCAG+CGG | - | chr7_4:33208076-33208095 | None:intergenic | 40.0% | |
! | TGCCGTGCTTTTATTAGTAG+AGG | + | chr7_4:33208276-33208295 | Msa1150180:CDS | 40.0% |
! | CGTGCTTTTATTAGTAGAGG+AGG | + | chr7_4:33208279-33208298 | Msa1150180:CDS | 40.0% |
GGTGAAGAAGGTGAAGAACA+CGG | - | chr7_4:33207439-33207458 | None:intergenic | 45.0% | |
GGAAGATCGTTATACAGCTG+GGG | + | chr7_4:33207687-33207706 | Msa1150180:CDS | 45.0% | |
! | TTTGGCGTATTTGATGGCCA+TGG | + | chr7_4:33208039-33208058 | Msa1150180:CDS | 45.0% |
TGAACTCGGAATCGGTATTG+AGG | - | chr7_4:33208173-33208192 | None:intergenic | 45.0% | |
ATCTGATCACCGACCTTCAA+GGG | + | chr7_4:33208320-33208339 | Msa1150180:CDS | 45.0% | |
TTTCGTCTTCCCTTGAAGGT+CGG | - | chr7_4:33208332-33208351 | None:intergenic | 45.0% | |
ACCTTCAAGGGAAGACGAAA+AGG | + | chr7_4:33208332-33208351 | Msa1150180:CDS | 45.0% | |
! | TCCTTTTCGTCTTCCCTTGA+AGG | - | chr7_4:33208336-33208355 | None:intergenic | 45.0% |
AAAGGACAGAATTGAGACCC+TGG | + | chr7_4:33208350-33208369 | Msa1150180:CDS | 45.0% | |
GGTGAAGAAGGTGAAGAACA+CGG | - | chr7_4:33207439-33207458 | None:intergenic | 45.0% | |
GGAAGATCGTTATACAGCTG+GGG | + | chr7_4:33207687-33207706 | Msa1150180:CDS | 45.0% | |
! | TTTGGCGTATTTGATGGCCA+TGG | + | chr7_4:33208039-33208058 | Msa1150180:CDS | 45.0% |
TGAACTCGGAATCGGTATTG+AGG | - | chr7_4:33208173-33208192 | None:intergenic | 45.0% | |
ATCTGATCACCGACCTTCAA+GGG | + | chr7_4:33208320-33208339 | Msa1150180:CDS | 45.0% | |
TTTCGTCTTCCCTTGAAGGT+CGG | - | chr7_4:33208332-33208351 | None:intergenic | 45.0% | |
ACCTTCAAGGGAAGACGAAA+AGG | + | chr7_4:33208332-33208351 | Msa1150180:CDS | 45.0% | |
! | TCCTTTTCGTCTTCCCTTGA+AGG | - | chr7_4:33208336-33208355 | None:intergenic | 45.0% |
AAAGGACAGAATTGAGACCC+TGG | + | chr7_4:33208350-33208369 | Msa1150180:CDS | 45.0% | |
ACGATTACCGAAACCACCCT+TGG | + | chr7_4:33207468-33207487 | Msa1150180:CDS | 50.0% | |
TTCTGGGTCGCAGAATGATG+CGG | + | chr7_4:33207510-33207529 | Msa1150180:CDS | 50.0% | |
TGAAGAGGAAACGACCTACC+AGG | + | chr7_4:33207536-33207555 | Msa1150180:CDS | 50.0% | |
! | GAGAGGGAGGAAGGAGTATA+TGG | + | chr7_4:33207666-33207685 | Msa1150180:intron | 50.0% |
ACAGCTGGGGTTAATCTTCG+TGG | + | chr7_4:33207700-33207719 | Msa1150180:CDS | 50.0% | |
TGCCAAAGCCGCTGAATTTG+CGG | + | chr7_4:33208065-33208084 | Msa1150180:CDS | 50.0% | |
GAGCGACGAAGATGATGTTG+AGG | + | chr7_4:33208128-33208147 | Msa1150180:CDS | 50.0% | |
CGACGAAGATGATGTTGAGG+AGG | + | chr7_4:33208131-33208150 | Msa1150180:CDS | 50.0% | |
TAGTAGAGGAGGGGTTGTTG+AGG | + | chr7_4:33208290-33208309 | Msa1150180:CDS | 50.0% | |
CATCTGATCACCGACCTTCA+AGG | + | chr7_4:33208319-33208338 | Msa1150180:CDS | 50.0% | |
ACGATTACCGAAACCACCCT+TGG | + | chr7_4:33207468-33207487 | Msa1150180:CDS | 50.0% | |
TTCTGGGTCGCAGAATGATG+CGG | + | chr7_4:33207510-33207529 | Msa1150180:CDS | 50.0% | |
TGAAGAGGAAACGACCTACC+AGG | + | chr7_4:33207536-33207555 | Msa1150180:CDS | 50.0% | |
! | GAGAGGGAGGAAGGAGTATA+TGG | + | chr7_4:33207666-33207685 | Msa1150180:intron | 50.0% |
ACAGCTGGGGTTAATCTTCG+TGG | + | chr7_4:33207700-33207719 | Msa1150180:CDS | 50.0% | |
TGCCAAAGCCGCTGAATTTG+CGG | + | chr7_4:33208065-33208084 | Msa1150180:CDS | 50.0% | |
GAGCGACGAAGATGATGTTG+AGG | + | chr7_4:33208128-33208147 | Msa1150180:CDS | 50.0% | |
CGACGAAGATGATGTTGAGG+AGG | + | chr7_4:33208131-33208150 | Msa1150180:CDS | 50.0% | |
TAGTAGAGGAGGGGTTGTTG+AGG | + | chr7_4:33208290-33208309 | Msa1150180:CDS | 50.0% | |
CATCTGATCACCGACCTTCA+AGG | + | chr7_4:33208319-33208338 | Msa1150180:CDS | 50.0% | |
AGGGATGTTGTTGAGGCGGA+GGG | + | chr7_4:33207619-33207638 | Msa1150180:CDS | 55.0% | |
TTGTTGAGGCGGAGGGAGAT+GGG | + | chr7_4:33207626-33207645 | Msa1150180:CDS | 55.0% | |
! | GGCGTATTTGATGGCCATGG+AGG | + | chr7_4:33208042-33208061 | Msa1150180:CDS | 55.0% |
TGCCGCAAATTCAGCGGCTT+TGG | - | chr7_4:33208070-33208089 | None:intergenic | 55.0% | |
AGGGATGTTGTTGAGGCGGA+GGG | + | chr7_4:33207619-33207638 | Msa1150180:CDS | 55.0% | |
TTGTTGAGGCGGAGGGAGAT+GGG | + | chr7_4:33207626-33207645 | Msa1150180:CDS | 55.0% | |
! | GGCGTATTTGATGGCCATGG+AGG | + | chr7_4:33208042-33208061 | Msa1150180:CDS | 55.0% |
TGCCGCAAATTCAGCGGCTT+TGG | - | chr7_4:33208070-33208089 | None:intergenic | 55.0% | |
GGTGGCGAGGGATGTTGTTG+AGG | + | chr7_4:33207612-33207631 | Msa1150180:CDS | 60.0% | |
GGCGAGGGATGTTGTTGAGG+CGG | + | chr7_4:33207615-33207634 | Msa1150180:CDS | 60.0% | |
GAGGGATGTTGTTGAGGCGG+AGG | + | chr7_4:33207618-33207637 | Msa1150180:CDS | 60.0% | |
GTTGTTGAGGCGGAGGGAGA+TGG | + | chr7_4:33207625-33207644 | Msa1150180:CDS | 60.0% | |
GTTGAGGAGGCAGTGAAGCG+CGG | + | chr7_4:33208144-33208163 | Msa1150180:CDS | 60.0% | |
GGTGGCGAGGGATGTTGTTG+AGG | + | chr7_4:33207612-33207631 | Msa1150180:CDS | 60.0% | |
GGCGAGGGATGTTGTTGAGG+CGG | + | chr7_4:33207615-33207634 | Msa1150180:CDS | 60.0% | |
GAGGGATGTTGTTGAGGCGG+AGG | + | chr7_4:33207618-33207637 | Msa1150180:CDS | 60.0% | |
GTTGTTGAGGCGGAGGGAGA+TGG | + | chr7_4:33207625-33207644 | Msa1150180:CDS | 60.0% | |
GTTGAGGAGGCAGTGAAGCG+CGG | + | chr7_4:33208144-33208163 | Msa1150180:CDS | 60.0% | |
TGTTCCGGCGACACCGTCTG+CGG | + | chr7_4:33207591-33207610 | Msa1150180:CDS | 65.0% | |
ACATCCCTCGCCACCGCAGA+CGG | - | chr7_4:33207607-33207626 | None:intergenic | 65.0% | |
! | CAGCGGCTTTGGCACCTCCA+TGG | - | chr7_4:33208059-33208078 | None:intergenic | 65.0% |
TGTTCCGGCGACACCGTCTG+CGG | + | chr7_4:33207591-33207610 | Msa1150180:CDS | 65.0% | |
ACATCCCTCGCCACCGCAGA+CGG | - | chr7_4:33207607-33207626 | None:intergenic | 65.0% | |
! | CAGCGGCTTTGGCACCTCCA+TGG | - | chr7_4:33208059-33208078 | None:intergenic | 65.0% |
GACACCGTCTGCGGTGGCGA+GGG | + | chr7_4:33207600-33207619 | Msa1150180:CDS | 70.0% | |
GACACCGTCTGCGGTGGCGA+GGG | + | chr7_4:33207600-33207619 | Msa1150180:CDS | 70.0% | |
TCCGGCGACACCGTCTGCGG+TGG | + | chr7_4:33207594-33207613 | Msa1150180:CDS | 75.0% | |
!! | GCCACCGCAGACGGTGTCGC+CGG | - | chr7_4:33207598-33207617 | None:intergenic | 75.0% |
CGACACCGTCTGCGGTGGCG+AGG | + | chr7_4:33207599-33207618 | Msa1150180:CDS | 75.0% | |
TCCGGCGACACCGTCTGCGG+TGG | + | chr7_4:33207594-33207613 | Msa1150180:CDS | 75.0% | |
!! | GCCACCGCAGACGGTGTCGC+CGG | - | chr7_4:33207598-33207617 | None:intergenic | 75.0% |
CGACACCGTCTGCGGTGGCG+AGG | + | chr7_4:33207599-33207618 | Msa1150180:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 33207409 | 33208456 | 33207409 | ID=Msa1150180;Name=Msa1150180 |
chr7_4 | mRNA | 33207409 | 33208456 | 33207409 | ID=Msa1150180-mRNA-1;Parent=Msa1150180;Name=Msa1150180-mRNA-1;_AED=0.43;_eAED=0.45;_QI=0|0.25|0|1|1|1|5|0|220 |
chr7_4 | exon | 33207409 | 33207647 | 33207409 | ID=Msa1150180-mRNA-1:exon:7921;Parent=Msa1150180-mRNA-1 |
chr7_4 | exon | 33207669 | 33207735 | 33207669 | ID=Msa1150180-mRNA-1:exon:7922;Parent=Msa1150180-mRNA-1 |
chr7_4 | exon | 33208033 | 33208246 | 33208033 | ID=Msa1150180-mRNA-1:exon:7923;Parent=Msa1150180-mRNA-1 |
chr7_4 | exon | 33208256 | 33208371 | 33208256 | ID=Msa1150180-mRNA-1:exon:7924;Parent=Msa1150180-mRNA-1 |
chr7_4 | exon | 33208430 | 33208456 | 33208430 | ID=Msa1150180-mRNA-1:exon:7925;Parent=Msa1150180-mRNA-1 |
chr7_4 | CDS | 33207409 | 33207647 | 33207409 | ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1 |
chr7_4 | CDS | 33207669 | 33207735 | 33207669 | ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1 |
chr7_4 | CDS | 33208033 | 33208246 | 33208033 | ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1 |
chr7_4 | CDS | 33208256 | 33208371 | 33208256 | ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1 |
chr7_4 | CDS | 33208430 | 33208456 | 33208430 | ID=Msa1150180-mRNA-1:cds;Parent=Msa1150180-mRNA-1 |
Gene Sequence |
Protein sequence |