AlfalfaGEDB | Msa1150670

M. sativa cultivar zhongmu-4 / Msa1150670

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141
PFAM: PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1150670	XP_003623151.1	95.183	519	21	3	1	518	1	516	0.0	962

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1150670	sp\|Q9LZM8\|BLH9_ARATH	47.791	498	192	16	72	518	95	575	1.18e-112	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1150670	G7L5K2	95.183	519	21	3	1	518	1	516	0.0	962

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TFs/TRs:

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Gene ID	Type	Classification
Msa1150670	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1023130	Msa1150670	0.806007	1.013996e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1150670	MtrunA17_Chr7g0240371	95.183	519	21	3	1	518	1	516	0.0	962
Msa1150670	MtrunA17_Chr4g0008591	49.836	608	205	18	2	518	3	601	7.57e-167	485
Msa1150670	MtrunA17_Chr4g0028701	41.363	411	168	11	126	468	231	636	3.30e-82	268
Msa1150670	MtrunA17_Chr2g0327021	48.421	285	107	7	127	379	235	511	3.04e-76	251
Msa1150670	MtrunA17_Chr8g0387321	35.763	439	214	12	140	515	185	618	2.29e-63	218
Msa1150670	MtrunA17_Chr1g0155681	40.523	306	147	6	144	426	174	467	4.36e-62	214
Msa1150670	MtrunA17_Chr8g0373801	41.722	302	146	8	121	394	364	663	1.82e-61	216
Msa1150670	MtrunA17_Chr5g0403251	42.105	285	136	8	136	394	330	611	1.31e-60	212
Msa1150670	MtrunA17_Chr4g0025521	43.772	281	120	7	140	394	217	485	1.60e-60	211
Msa1150670	MtrunA17_Chr3g0141941	41.288	264	127	6	136	377	158	415	7.01e-60	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1150670	AT5G02030.1	47.791	498	192	16	72	518	95	575	1.20e-113	348
Msa1150670	AT2G27990.1	51.190	252	114	4	130	379	252	496	9.72e-76	250
Msa1150670	AT1G19700.1	44.853	272	109	6	136	377	161	421	1.75e-66	224
Msa1150670	AT1G19700.3	44.853	272	109	6	136	377	161	421	1.75e-66	224
Msa1150670	AT1G19700.5	44.853	272	109	6	136	377	161	421	1.75e-66	224
Msa1150670	AT1G19700.4	44.853	272	109	6	136	377	161	421	1.75e-66	224
Msa1150670	AT1G19700.2	44.853	272	109	6	136	377	161	421	1.75e-66	224
Msa1150670	AT2G16400.1	37.750	400	209	11	134	518	108	482	4.16e-66	222
Msa1150670	AT1G75410.1	45.660	265	112	8	135	377	162	416	9.82e-66	222
Msa1150670	AT1G75410.2	45.660	265	112	8	135	377	162	416	9.82e-66	222

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Find 122 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATAATAAAGAATA+GGG	0.402142	7_4:+34439358	None:intergenic
AAAGAGAGTGATGGAAGTGA+CGG	0.501058	7_4:+34439401	None:intergenic
AACACGTCCAACAACCTGTT+TGG	0.443229	7_4:-34436598	Msa1150670:CDS
AACATCGTGAAACTTGTCTG+TGG	0.748355	7_4:+34435621	None:intergenic
AACCCCGGCCATTGACTGTA+AGG	0.466601	7_4:+34436626	None:intergenic
AACTACTAACCATGTTTCTT+GGG	0.391182	7_4:-34435261	Msa1150670:three_prime_UTR
AACTGGTCTATCTCGTAACC+AGG	0.577110	7_4:-34435898	Msa1150670:intron
AACTTGTCTGTGGAGGTAGA+TGG	0.550200	7_4:+34435631	None:intergenic
AAGAACACTGACAGCACGCT+CGG	0.533120	7_4:+34436556	None:intergenic
AAGATTCAATGAAACTTGTT+TGG	0.343303	7_4:+34439235	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAAAGGTGAATAGTTA+GGG	+	chr7_4:34435432-34435451	None:intergenic	30.0%
ATGAATCATGTATACAACGA+TGG	-	chr7_4:34435523-34435542	Msa1150670:CDS	30.0%
TCTTTGATGGAAACTAATCA+TGG	-	chr7_4:34435832-34435851	Msa1150670:intron	30.0%
TAGATAACTCCATTGAACTA+AGG	+	chr7_4:34436766-34436785	None:intergenic	30.0%
TTCAATGGAGTTATCTACTT+GGG	-	chr7_4:34436769-34436788	Msa1150670:CDS	30.0%
GGACATGACATTAATAACAA+TGG	-	chr7_4:34436790-34436809	Msa1150670:CDS	30.0%
AACTTATCCCATAGTATATC+GGG	+	chr7_4:34436981-34437000	None:intergenic	30.0%
AAGGAATATATGCTGAAGAA+TGG	-	chr7_4:34437039-34437058	Msa1150670:intron	30.0%
AGGAATATATGCTGAAGAAT+GGG	-	chr7_4:34437040-34437059	Msa1150670:intron	30.0%
GATTTATTCATCTTGCTCAA+AGG	-	chr7_4:34437177-34437196	Msa1150670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	34435154	34439496	34435154	ID=Msa1150670;Name=Msa1150670
chr7_4	mRNA	34435154	34439496	34435154	ID=Msa1150670-mRNA-1;Parent=Msa1150670;Name=Msa1150670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=159\|1\|1\|1\|1\|1\|4\|152\|518
chr7_4	exon	34435154	34435803	34435154	ID=Msa1150670-mRNA-1:exon:8166;Parent=Msa1150670-mRNA-1
chr7_4	exon	34435899	34435959	34435899	ID=Msa1150670-mRNA-1:exon:8165;Parent=Msa1150670-mRNA-1
chr7_4	exon	34436524	34436888	34436524	ID=Msa1150670-mRNA-1:exon:8164;Parent=Msa1150670-mRNA-1
chr7_4	exon	34438705	34439496	34438705	ID=Msa1150670-mRNA-1:exon:8163;Parent=Msa1150670-mRNA-1
chr7_4	five_prime_UTR	34439338	34439496	34439338	ID=Msa1150670-mRNA-1:five_prime_utr;Parent=Msa1150670-mRNA-1
chr7_4	CDS	34438705	34439337	34438705	ID=Msa1150670-mRNA-1:cds;Parent=Msa1150670-mRNA-1
chr7_4	CDS	34436524	34436888	34436524	ID=Msa1150670-mRNA-1:cds;Parent=Msa1150670-mRNA-1
chr7_4	CDS	34435899	34435959	34435899	ID=Msa1150670-mRNA-1:cds;Parent=Msa1150670-mRNA-1
chr7_4	CDS	34435306	34435803	34435306	ID=Msa1150670-mRNA-1:cds;Parent=Msa1150670-mRNA-1
chr7_4	three_prime_UTR	34435154	34435305	34435154	ID=Msa1150670-mRNA-1:three_prime_utr;Parent=Msa1150670-mRNA-1

Gene Sequence

>Msa1150670

ATGGCTGATGAGGGTTTTGAAAATTATTATCATATCCCACAACAAAGCAGAAGAGAAAAACTTCGTTATTTATCTCAAAGCCAAACAAGTTTCATTGAATCTTCAACCACCCTTAACCCTAACTATTCACCTTTACCTTCTCTTTACGATCCTTCACTCATTTCACCTTTAGATGCTATAAACAGTAACCCTTTTCTTTATCAAACTCAAATGAATCATGTATACAACGATGGTGGTAGTAGTAGTAACAACAATGAAGTTATGTTGTTGAAATCTGAACCTTTATCTTTATCTTTATCATCAAACAAAAACAACCAGAATCAGATGAGTGCTGCTGATTTTCAGCGTTATGGTTCTGTTGTTGATCATGTTTCTAGGAACACGGTTCCATTAGGGCCATTTACAGGTTATGCTTCTGTTTTGAAGGGATCGAGGTTTTTGAAACCTGCACAACAATTATTGGATGAGATATGTGATGTTGGTGTTCGTGCTGAGAAGATTATTGCTGCCGTTGATGCATCTTTGATGGAAACTAATCATGGTAACAGTGGAATGATTAATGGTGTTGATGATGATACACTTGGTGATGATGGAAGGAAGAACAAGTCTAGATTGTTAACAGTGCTTGATGAGGTTTGCAGGAGGTACAGACAGTACTACCAGCAGATTCATGCAGTAATAACTTCATTTGAATATGTTGCTGGCCTCGGTAACGCTGCTCCGTATGCAAGTTTGGCTATAAATGCCATGTCTAAACATTTTAGATTCTTGAAGAATGTGATTACCGACCAGATTCAGTTTATCGGTAAGTCTAATTATCAGATAAGCAATAGAAAGGATGCATCTCCAAGGTTTCACAATGGCGATGGAGCCCCTTACAGTCAATGGCCGGGGTTTATAGAACACGTCCAACAACCTGTTTGGCGACCTCAAAGAGGGCTCCCCGAGCGTGCTGTCAGTGTTCTTAGGGGATGGTTGTTTGAACACTTTCTGCATCCTTACCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAACCAGGTGTCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAGCCAATGGTGGAGGAAATACACATGCTTGAATCACAGCAATCTCCAAAGGAATCACAGAGAGATGAACATAGTCGAAACAATTTAAGCGAGAACAACATTGCTGAGAATCCATCTACCTCCACAGACAAGTTTCACGATGTTGCATATAAACGCACTAGAAACGAACTTCACAACATGTCAGTGCCGAATCATAGTATAGCAAGCAATCAACAAGTTGGTAATGTTGGAGTGAGCATGATGAATAATGGTGCAACAAGCAATGGTGTATCTCTGACGCTCGGTCTTCATCAAAATCATGGAATTGGGTTATCCGAGCCTTTCAACATGAGTGCCGCGCAGCGTTTTGGTCTAGCACATCAACCTGATAGTTACGCCGCGAGTGGTTTTCAATTGCAGAATAGGCAATTTGGGAGAGATTTTATTGGTGGGCAACTTTTGCGTGACTATGTAGGATGA

Protein sequence

>Msa1150670

MADEGFENYYHIPQQSRREKLRYLSQSQTSFIESSTTLNPNYSPLPSLYDPSLISPLDAINSNPFLYQTQMNHVYNDGGSSSNNNEVMLLKSEPLSLSLSSNKNNQNQMSAADFQRYGSVVDHVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICDVGVRAEKIIAAVDASLMETNHGNSGMINGVDDDTLGDDGRKNKSRLLTVLDEVCRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMSKHFRFLKNVITDQIQFIGKSNYQISNRKDASPRFHNGDGAPYSQWPGFIEHVQQPVWRPQRGLPERAVSVLRGWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSPKESQRDEHSRNNLSENNIAENPSTSTDKFHDVAYKRTRNELHNMSVPNHSIASNQQVGNVGVSMMNNGATSNGVSLTLGLHQNHGIGLSEPFNMSAAQRFGLAHQPDSYAASGFQLQNRQFGRDFIGGQLLRDYVG*