Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150720 | XP_003623159.1 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 3.16e-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150720 | G7L5L0 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 1.51e-103 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1043060 | Msa1150720 | 0.877311 | 6.956573e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150720 | MtrunA17_Chr7g0240431 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 2.91e-107 | 302 |
| Msa1150720 | MtrunA17_Chr4g0008731 | 53.750 | 160 | 66 | 4 | 1 | 156 | 1 | 156 | 6.25e-47 | 149 |
| Msa1150720 | MtrunA17_Chr4g0008721 | 43.125 | 160 | 78 | 5 | 1 | 156 | 1 | 151 | 3.48e-31 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150720 | AT5G02020.1 | 54.601 | 163 | 53 | 6 | 1 | 156 | 1 | 149 | 2.90e-36 | 122 |
| Msa1150720 | AT5G59080.2 | 43.827 | 162 | 58 | 4 | 1 | 156 | 1 | 135 | 2.95e-26 | 97.1 |
| Msa1150720 | AT5G59080.1 | 43.827 | 162 | 58 | 4 | 1 | 156 | 1 | 135 | 2.95e-26 | 97.1 |
| Msa1150720 | AT2G39855.2 | 41.667 | 144 | 54 | 6 | 21 | 156 | 21 | 142 | 3.23e-20 | 81.6 |
| Msa1150720 | AT2G39855.4 | 41.667 | 144 | 54 | 6 | 21 | 156 | 21 | 142 | 3.23e-20 | 81.6 |
| Msa1150720 | AT5G02020.2 | 49.231 | 130 | 48 | 5 | 1 | 123 | 1 | 119 | 1.45e-19 | 79.7 |
| Msa1150720 | AT3G55646.1 | 42.857 | 126 | 53 | 5 | 32 | 156 | 39 | 146 | 1.13e-17 | 75.1 |
| Msa1150720 | AT2G39855.3 | 61.905 | 63 | 18 | 2 | 95 | 156 | 60 | 117 | 7.04e-17 | 72.4 |
| Msa1150720 | AT3G46880.2 | 38.217 | 157 | 55 | 5 | 1 | 156 | 1 | 116 | 2.51e-16 | 70.9 |
Find 59 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTTGAGTACCAATTT+TGG | 0.194433 | 7_4:-34524569 | None:intergenic |
| AAAATAGAAATTACAATATA+GGG | 0.223199 | 7_4:-34526381 | None:intergenic |
| ATGCATATTTGCAGATAAAT+AGG | 0.258495 | 7_4:+34526072 | Msa1150720:intron |
| TCTTTCACTTCTGAACTCTT+TGG | 0.272651 | 7_4:+34524020 | Msa1150720:CDS |
| GAAGGATCAAACTCCAAAAT+TGG | 0.282890 | 7_4:+34524556 | Msa1150720:CDS |
| TAAAATAGAAATTACAATAT+AGG | 0.292817 | 7_4:-34526382 | None:intergenic |
| CTTAGCTCATCGATCTATTA+TGG | 0.302082 | 7_4:+34525155 | Msa1150720:CDS |
| TTGCATAAATCCTCTGCTTC+TGG | 0.309408 | 7_4:+34524053 | Msa1150720:CDS |
| CCTCAGAGTACACGAGATTC+AGG | 0.322582 | 7_4:+34525200 | Msa1150720:CDS |
| CTTCTCTCCGTTTGTTTCCT+AGG | 0.326753 | 7_4:+34523839 | Msa1150720:five_prime_UTR |
| ATGGAAGGAAGGAAACAATT+TGG | 0.335652 | 7_4:+34523975 | Msa1150720:CDS |
| TTTGTGTTGATTTAGGTATT+TGG | 0.368914 | 7_4:+34524490 | Msa1150720:intron |
| ATTTGCAAACTTGTTTATAG+TGG | 0.376460 | 7_4:+34523878 | Msa1150720:five_prime_UTR |
| TATAAACAAGTTTGCAAATG+AGG | 0.402379 | 7_4:-34523874 | None:intergenic |
| CCTATTGTGATTCTGTCGTT+TGG | 0.402545 | 7_4:-34526177 | None:intergenic |
| GTATAGGAATATGTATTATC+AGG | 0.403619 | 7_4:+34526295 | Msa1150720:three_prime_UTR |
| CATTACAACGTTTCTTTCCA+TGG | 0.412420 | 7_4:-34526116 | None:intergenic |
| AACTCAGAACAAAACAAATA+AGG | 0.412533 | 7_4:+34525088 | Msa1150720:CDS |
| GGTGGTTAATGTTTCTTTGT+TGG | 0.423242 | 7_4:+34523902 | Msa1150720:five_prime_UTR |
| CTTTATCAGTACAAGAAAGA+TGG | 0.423454 | 7_4:+34525526 | Msa1150720:intron |
| TTGTGATTCTGTCGTTTGGC+TGG | 0.437582 | 7_4:-34526173 | None:intergenic |
| TATATAATAACTATAACTAT+AGG | 0.439201 | 7_4:-34526202 | None:intergenic |
| GAAATATACTCATAAAATTA+CGG | 0.444375 | 7_4:-34526419 | None:intergenic |
| AGAGGATTTATGCAAGTCAT+TGG | 0.444884 | 7_4:-34524045 | None:intergenic |
| ATGATATTGTATAAGTTGTA+TGG | 0.453106 | 7_4:+34526268 | Msa1150720:three_prime_UTR |
| AAGAGAACAGAAGTTTGAAA+AGG | 0.475721 | 7_4:-34523804 | None:intergenic |
| TCTCTGCGCTCACCAATGAA+TGG | 0.476932 | 7_4:+34524520 | Msa1150720:CDS |
| ACAAAATACTAATAAAGTAG+AGG | 0.477473 | 7_4:-34526442 | None:intergenic |
| CCAAACGACAGAATCACAAT+AGG | 0.478675 | 7_4:+34526177 | Msa1150720:three_prime_UTR |
| TACGAGTTTCTTGATCCAAA+TGG | 0.479735 | 7_4:+34525757 | Msa1150720:three_prime_UTR |
| CAATGCAGATTACATCAGTA+AGG | 0.491806 | 7_4:+34525052 | Msa1150720:intron |
| AACTCCAAAATTGGTACTCA+AGG | 0.503613 | 7_4:+34524565 | Msa1150720:CDS |
| AAAAGGAGAGACACGTGAAA+AGG | 0.505203 | 7_4:-34523787 | None:intergenic |
| CTAAGTACATTATTCTGTAC+AGG | 0.510854 | 7_4:-34526243 | None:intergenic |
| TAAGTTGTATGGTATAGTAT+AGG | 0.514490 | 7_4:+34526279 | Msa1150720:three_prime_UTR |
| AGATTCAGGATTGAACACTA+TGG | 0.537760 | 7_4:+34525214 | Msa1150720:CDS |
| CTTGAGGAGCATATTTCCCT+CGG | 0.551233 | 7_4:-34525731 | None:intergenic |
| TGCAAACTTGTTTATAGTGG+CGG | 0.558326 | 7_4:+34523881 | Msa1150720:five_prime_UTR |
| AAACTTGTTTATAGTGGCGG+TGG | 0.564633 | 7_4:+34523884 | Msa1150720:five_prime_UTR |
| TGCAGTGACAAAGTTGTGAA+TGG | 0.565227 | 7_4:+34526137 | Msa1150720:three_prime_UTR |
| TTAAAAGAGTACACTTGCCG+AGG | 0.565396 | 7_4:+34525714 | Msa1150720:exon |
| AAATAGAAATTACAATATAG+GGG | 0.566541 | 7_4:-34526380 | None:intergenic |
| CAAAATACTAATAAAGTAGA+GGG | 0.572821 | 7_4:-34526441 | None:intergenic |
| ACAAACGGAGAGAAGAAAGA+AGG | 0.573008 | 7_4:-34523831 | None:intergenic |
| CATAATAGATCGATGAGCTA+AGG | 0.574520 | 7_4:-34525154 | None:intergenic |
| AAAGTGCGTCAAGAGGAAAC+TGG | 0.578629 | 7_4:+34525566 | Msa1150720:CDS |
| TATTGTGACAGAGTTGTCCA+TGG | 0.605281 | 7_4:+34526099 | Msa1150720:three_prime_UTR |
| CGAGGGAAATATGCTCCTCA+AGG | 0.606604 | 7_4:+34525732 | Msa1150720:three_prime_UTR |
| GAGGACGAGAATATACGTCT+TGG | 0.607032 | 7_4:-34525181 | None:intergenic |
| TAAAAGAGTACACTTGCCGA+GGG | 0.607782 | 7_4:+34525715 | Msa1150720:exon |
| ATCGATGAGCTAAGGTGACA+TGG | 0.610787 | 7_4:-34525146 | None:intergenic |
| AATGCAGATTACATCAGTAA+GGG | 0.615541 | 7_4:+34525053 | Msa1150720:intron |
| GATTCAGAAAGTGCGTCAAG+AGG | 0.622488 | 7_4:+34525559 | Msa1150720:CDS |
| TCAAGAGGAAACTGGTGGCA+AGG | 0.623511 | 7_4:+34525574 | Msa1150720:CDS |
| AGCTCATCGATCTATTATGG+TGG | 0.653037 | 7_4:+34525158 | Msa1150720:CDS |
| TATCAGTACAAGAAAGATGG+AGG | 0.660585 | 7_4:+34525529 | Msa1150720:intron |
| CCTGAATCTCGTGTACTCTG+AGG | 0.663503 | 7_4:-34525200 | None:intergenic |
| CAAGAAACTCGTATACCTTG+AGG | 0.686916 | 7_4:-34525747 | None:intergenic |
| GTGCGTCAAGAGGAAACTGG+TGG | 0.699548 | 7_4:+34525569 | Msa1150720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTCATTGTTT+TGG | + | chr7_4:34525020-34525039 | Msa1150720:intron | 10.0% |
| !!! | TTTTTTTTTTTCATTGTTTT+GGG | + | chr7_4:34525021-34525040 | Msa1150720:intron | 10.0% |
| !! | TATATAATAACTATAACTAT+AGG | - | chr7_4:34526205-34526224 | None:intergenic | 10.0% |
| !! | AAAATAGAAATTACAATATA+GGG | - | chr7_4:34526384-34526403 | None:intergenic | 10.0% |
| !! | TAAAATAGAAATTACAATAT+AGG | - | chr7_4:34526385-34526404 | None:intergenic | 10.0% |
| !! | GTATAGTTTAATAATCATTA+TGG | + | chr7_4:34524416-34524435 | Msa1150720:intron | 15.0% |
| !!! | ATTTTATTAAAACCTCATTT+TGG | - | chr7_4:34524661-34524680 | None:intergenic | 15.0% |
| !! | TATATTGTCTAATAAATTTG+TGG | + | chr7_4:34525604-34525623 | Msa1150720:intron | 15.0% |
| !! | AAGTTCTTAAATTTATGATT+CGG | + | chr7_4:34525812-34525831 | Msa1150720:intron | 15.0% |
| !! | AAATAGAAATTACAATATAG+GGG | - | chr7_4:34526383-34526402 | None:intergenic | 15.0% |
| !! | GAAATATACTCATAAAATTA+CGG | - | chr7_4:34526422-34526441 | None:intergenic | 15.0% |
| !!! | TATGGTTTTGTATATGTATA+TGG | + | chr7_4:34524434-34524453 | Msa1150720:intron | 20.0% |
| !!! | AAGTTGTTTTGAGATTTTTA+TGG | + | chr7_4:34524467-34524486 | Msa1150720:intron | 20.0% |
| !!! | AAAAAATGGTATTTTCTCTA+TGG | + | chr7_4:34525478-34525497 | Msa1150720:intron | 20.0% |
| !! | ATGATATTGTATAAGTTGTA+TGG | + | chr7_4:34526268-34526287 | Msa1150720:three_prime_UTR | 20.0% |
| ! | TATAAACAAGTTTGCAAATG+AGG | - | chr7_4:34523877-34523896 | None:intergenic | 25.0% |
| !! | ATTTGCAAACTTGTTTATAG+TGG | + | chr7_4:34523878-34523897 | Msa1150720:five_prime_UTR | 25.0% |
| !!! | CAAGTGTTGAAGTAAAAAAA+TGG | + | chr7_4:34523956-34523975 | Msa1150720:exon | 25.0% |
| ! | TGTTGAAGTAAAAAAATGGA+AGG | + | chr7_4:34523960-34523979 | Msa1150720:exon | 25.0% |
| ! | ACTCAAATTATTAGCTATGT+CGG | + | chr7_4:34524269-34524288 | Msa1150720:intron | 25.0% |
| !!! | TTTATGGTTTGTGTTGATTT+AGG | + | chr7_4:34524483-34524502 | Msa1150720:intron | 25.0% |
| !!! | TTTGTGTTGATTTAGGTATT+TGG | + | chr7_4:34524490-34524509 | Msa1150720:intron | 25.0% |
| ! | GTTTGTAATATTCCAAAATG+AGG | + | chr7_4:34524646-34524665 | Msa1150720:intron | 25.0% |
| !! | AATAGCGATTTGTTCAAATT+CGG | - | chr7_4:34524710-34524729 | None:intergenic | 25.0% |
| ! | AATAACAACTATAGCACTAT+AGG | + | chr7_4:34524766-34524785 | Msa1150720:intron | 25.0% |
| ! | ATAACAACTATAGCACTATA+GGG | + | chr7_4:34524767-34524786 | Msa1150720:intron | 25.0% |
| ! | AACTCAGAACAAAACAAATA+AGG | + | chr7_4:34525088-34525107 | Msa1150720:CDS | 25.0% |
| ! | TGATAAAATGAGTTACTAGA+TGG | + | chr7_4:34525358-34525377 | Msa1150720:intron | 25.0% |
| !!! | CACTTTTTGAATCGAAAAAA+TGG | + | chr7_4:34525464-34525483 | Msa1150720:intron | 25.0% |
| !! | TGAAAGCTAATCACATATTT+TGG | - | chr7_4:34525786-34525805 | None:intergenic | 25.0% |
| ! | ATGCATATTTGCAGATAAAT+AGG | + | chr7_4:34526072-34526091 | Msa1150720:intron | 25.0% |
| ! | TAAGTTGTATGGTATAGTAT+AGG | + | chr7_4:34526279-34526298 | Msa1150720:three_prime_UTR | 25.0% |
| ! | GTATAGGAATATGTATTATC+AGG | + | chr7_4:34526295-34526314 | Msa1150720:three_prime_UTR | 25.0% |
| !! | TATTATCAGGTACTTTTATG+TGG | + | chr7_4:34526308-34526327 | Msa1150720:three_prime_UTR | 25.0% |
| !!! | ATGCTAGCTTTTACATTAAT+GGG | + | chr7_4:34526334-34526353 | Msa1150720:three_prime_UTR | 25.0% |
| AAGAGAACAGAAGTTTGAAA+AGG | - | chr7_4:34523807-34523826 | None:intergenic | 30.0% | |
| GAAGTAAAAAAATGGAAGGA+AGG | + | chr7_4:34523964-34523983 | Msa1150720:exon | 30.0% | |
| ! | TATTTTCTCTCCATCTTCTA+AGG | + | chr7_4:34524088-34524107 | Msa1150720:CDS | 30.0% |
| ACACAAAAAACCTTAGAAGA+TGG | - | chr7_4:34524101-34524120 | None:intergenic | 30.0% | |
| TATTAAGCACAAATACTCCT+CGG | + | chr7_4:34524160-34524179 | Msa1150720:intron | 30.0% | |
| AACTGAGAAATGCATTGAAT+TGG | - | chr7_4:34524363-34524382 | None:intergenic | 30.0% | |
| GCAAATATCTTTAAGTAGAG+AGG | - | chr7_4:34524612-34524631 | None:intergenic | 30.0% | |
| !! | GAGGTTTTAATAAAATCCTG+TGG | + | chr7_4:34524665-34524684 | Msa1150720:intron | 30.0% |
| TTTATTGGTATTGTCAATCG+CGG | - | chr7_4:34524821-34524840 | None:intergenic | 30.0% | |
| ! | GTGCTACTATGTGAATTTAT+TGG | - | chr7_4:34524836-34524855 | None:intergenic | 30.0% |
| GAAAATAGGGACAATAAGAA+AGG | - | chr7_4:34524864-34524883 | None:intergenic | 30.0% | |
| CATTGAGATCAAGGAAAATA+GGG | - | chr7_4:34524877-34524896 | None:intergenic | 30.0% | |
| ACATTGAGATCAAGGAAAAT+AGG | - | chr7_4:34524878-34524897 | None:intergenic | 30.0% | |
| AATGCAGATTACATCAGTAA+GGG | + | chr7_4:34525053-34525072 | Msa1150720:intron | 30.0% | |
| AACATAACAAACATTTAGCG+CGG | + | chr7_4:34525292-34525311 | Msa1150720:intron | 30.0% | |
| TTCTGTCTTGAAGTCTATAT+AGG | - | chr7_4:34525401-34525420 | None:intergenic | 30.0% | |
| CTTTATCAGTACAAGAAAGA+TGG | + | chr7_4:34525526-34525545 | Msa1150720:intron | 30.0% | |
| TGTGGTGTAAACATTGTATT+CGG | + | chr7_4:34525622-34525641 | Msa1150720:intron | 30.0% | |
| TTATAGACAAGTTACAGCAT+AGG | - | chr7_4:34525677-34525696 | None:intergenic | 30.0% | |
| !!! | CACATATTTTGGTTACCATT+TGG | - | chr7_4:34525775-34525794 | None:intergenic | 30.0% |
| ! | TGAAAGGTTTGAAATCAACT+TGG | + | chr7_4:34525858-34525877 | Msa1150720:intron | 30.0% |
| ! | TACATACCGAATTACTGATT+TGG | - | chr7_4:34525884-34525903 | None:intergenic | 30.0% |
| ! | GTACATGTAATTTACCGATT+TGG | + | chr7_4:34525901-34525920 | Msa1150720:intron | 30.0% |
| GATTATGTTAATCACGGATT+TGG | - | chr7_4:34526003-34526022 | None:intergenic | 30.0% | |
| GGTCAAGATTATGTTAATCA+CGG | - | chr7_4:34526009-34526028 | None:intergenic | 30.0% | |
| TATCTAGCAGTTTCAAAACA+TGG | - | chr7_4:34526030-34526049 | None:intergenic | 30.0% | |
| CTAAGTACATTATTCTGTAC+AGG | - | chr7_4:34526246-34526265 | None:intergenic | 30.0% | |
| !!! | GATGCTAGCTTTTACATTAA+TGG | + | chr7_4:34526333-34526352 | Msa1150720:three_prime_UTR | 30.0% |
| ! | TGCTTTTCCTAGGAAACAAA+CGG | - | chr7_4:34523849-34523868 | None:intergenic | 35.0% |
| !!! | TGAGGTTTTTTGCTTTTCCT+AGG | - | chr7_4:34523859-34523878 | None:intergenic | 35.0% |
| ! | TGCAAACTTGTTTATAGTGG+CGG | + | chr7_4:34523881-34523900 | Msa1150720:five_prime_UTR | 35.0% |
| GGTGGTTAATGTTTCTTTGT+TGG | + | chr7_4:34523902-34523921 | Msa1150720:five_prime_UTR | 35.0% | |
| ATGGAAGGAAGGAAACAATT+TGG | + | chr7_4:34523975-34523994 | Msa1150720:CDS | 35.0% | |
| TCTTTCACTTCTGAACTCTT+TGG | + | chr7_4:34524020-34524039 | Msa1150720:CDS | 35.0% | |
| AGAGGATTTATGCAAGTCAT+TGG | - | chr7_4:34524048-34524067 | None:intergenic | 35.0% | |
| GCAAAGCTATGAATTAAGCA+CGG | - | chr7_4:34524335-34524354 | None:intergenic | 35.0% | |
| ! | GTTGCAGTTTTTCCATTCAT+TGG | - | chr7_4:34524535-34524554 | None:intergenic | 35.0% |
| AATGGAAAAACTGCAACTGA+AGG | + | chr7_4:34524538-34524557 | Msa1150720:CDS | 35.0% | |
| GAAGGATCAAACTCCAAAAT+TGG | + | chr7_4:34524556-34524575 | Msa1150720:CDS | 35.0% | |
| AACTCCAAAATTGGTACTCA+AGG | + | chr7_4:34524565-34524584 | Msa1150720:CDS | 35.0% | |
| ! | TCAACCTTGAGTACCAATTT+TGG | - | chr7_4:34524572-34524591 | None:intergenic | 35.0% |
| CACTCTAAACATTGAGATCA+AGG | - | chr7_4:34524886-34524905 | None:intergenic | 35.0% | |
| CAATGCAGATTACATCAGTA+AGG | + | chr7_4:34525052-34525071 | Msa1150720:intron | 35.0% | |
| CATAATAGATCGATGAGCTA+AGG | - | chr7_4:34525157-34525176 | None:intergenic | 35.0% | |
| CTTAGCTCATCGATCTATTA+TGG | + | chr7_4:34525155-34525174 | Msa1150720:CDS | 35.0% | |
| AGATTCAGGATTGAACACTA+TGG | + | chr7_4:34525214-34525233 | Msa1150720:CDS | 35.0% | |
| CTTGAAGTCTATATAGGACT+AGG | - | chr7_4:34525395-34525414 | None:intergenic | 35.0% | |
| AGACAGAATATTGAGCCTAA+TGG | + | chr7_4:34525413-34525432 | Msa1150720:intron | 35.0% | |
| ! | ATGGTATTTTCTCTATGGCT+CGG | + | chr7_4:34525483-34525502 | Msa1150720:intron | 35.0% |
| TATCAGTACAAGAAAGATGG+AGG | + | chr7_4:34525529-34525548 | Msa1150720:intron | 35.0% | |
| CAAGTTACAGCATAGGAAAT+CGG | - | chr7_4:34525670-34525689 | None:intergenic | 35.0% | |
| ! | GCTGTAACTTGTCTATAAAC+AGG | + | chr7_4:34525679-34525698 | Msa1150720:intron | 35.0% |
| TACGAGTTTCTTGATCCAAA+TGG | + | chr7_4:34525757-34525776 | Msa1150720:three_prime_UTR | 35.0% | |
| ! | AAATTTATGATTCGGCCATG+TGG | + | chr7_4:34525820-34525839 | Msa1150720:intron | 35.0% |
| GATTTCACAAGGACTATGAA+AGG | + | chr7_4:34525842-34525861 | Msa1150720:intron | 35.0% | |
| ACTTGGCCAAATCAGTAATT+CGG | + | chr7_4:34525875-34525894 | Msa1150720:intron | 35.0% | |
| CATTACAACGTTTCTTTCCA+TGG | - | chr7_4:34526119-34526138 | None:intergenic | 35.0% | |
| AAAAGGAGAGACACGTGAAA+AGG | - | chr7_4:34523790-34523809 | None:intergenic | 40.0% | |
| ACAAACGGAGAGAAGAAAGA+AGG | - | chr7_4:34523834-34523853 | None:intergenic | 40.0% | |
| ! | AAACTTGTTTATAGTGGCGG+TGG | + | chr7_4:34523884-34523903 | Msa1150720:five_prime_UTR | 40.0% |
| TTGCATAAATCCTCTGCTTC+TGG | + | chr7_4:34524053-34524072 | Msa1150720:CDS | 40.0% | |
| GTCAAAAATTCCAGAAGCAG+AGG | - | chr7_4:34524066-34524085 | None:intergenic | 40.0% | |
| ATTAAGCACGGATACTAACG+CGG | - | chr7_4:34524323-34524342 | None:intergenic | 40.0% | |
| ! | TGTCTGTTATTTGACACCAC+AGG | - | chr7_4:34524684-34524703 | None:intergenic | 40.0% |
| TTGTCAATCGCGGAAAATAG+TGG | - | chr7_4:34524811-34524830 | None:intergenic | 40.0% | |
| AGCTCATCGATCTATTATGG+TGG | + | chr7_4:34525158-34525177 | Msa1150720:CDS | 40.0% | |
| GAATATTGAGCCTAATGGCT+AGG | + | chr7_4:34525418-34525437 | Msa1150720:intron | 40.0% | |
| CAGAAATCATCCTAGCCATT+AGG | - | chr7_4:34525431-34525450 | None:intergenic | 40.0% | |
| TGGCTAGGATGATTTCTGAA+TGG | + | chr7_4:34525433-34525452 | Msa1150720:intron | 40.0% | |
| ! | TTAAAAGAGTACACTTGCCG+AGG | + | chr7_4:34525714-34525733 | Msa1150720:exon | 40.0% |
| ! | TAAAAGAGTACACTTGCCGA+GGG | + | chr7_4:34525715-34525734 | Msa1150720:exon | 40.0% |
| CAAGAAACTCGTATACCTTG+AGG | - | chr7_4:34525750-34525769 | None:intergenic | 40.0% | |
| TAGTCCTTGTGAAATCCACA+TGG | - | chr7_4:34525838-34525857 | None:intergenic | 40.0% | |
| TGGCATCAGGAAATCCAAAT+CGG | - | chr7_4:34525918-34525937 | None:intergenic | 40.0% | |
| GCGTAAATTTCCCAATTGCA+TGG | - | chr7_4:34525946-34525965 | None:intergenic | 40.0% | |
| ATGTGCGATTACTTGACTAC+AGG | + | chr7_4:34525973-34525992 | Msa1150720:intron | 40.0% | |
| TGTGCGATTACTTGACTACA+GGG | + | chr7_4:34525974-34525993 | Msa1150720:intron | 40.0% | |
| TATTGTGACAGAGTTGTCCA+TGG | + | chr7_4:34526099-34526118 | Msa1150720:three_prime_UTR | 40.0% | |
| TGCAGTGACAAAGTTGTGAA+TGG | + | chr7_4:34526137-34526156 | Msa1150720:three_prime_UTR | 40.0% | |
| CCTATTGTGATTCTGTCGTT+TGG | - | chr7_4:34526180-34526199 | None:intergenic | 40.0% | |
| CCAAACGACAGAATCACAAT+AGG | + | chr7_4:34526177-34526196 | Msa1150720:three_prime_UTR | 40.0% | |
| !!! | GGGTGATGCTCTATTTTTAG+TGG | + | chr7_4:34526354-34526373 | Msa1150720:three_prime_UTR | 40.0% |
| CTTCTCTCCGTTTGTTTCCT+AGG | + | chr7_4:34523839-34523858 | Msa1150720:five_prime_UTR | 45.0% | |
| GCACAAATACTCCTCGGATT+AGG | + | chr7_4:34524166-34524185 | Msa1150720:intron | 45.0% | |
| ATCGATGAGCTAAGGTGACA+TGG | - | chr7_4:34525149-34525168 | None:intergenic | 45.0% | |
| GAGGACGAGAATATACGTCT+TGG | - | chr7_4:34525184-34525203 | None:intergenic | 45.0% | |
| ! | ATGGCTCGGAATGACTAACA+TGG | + | chr7_4:34525497-34525516 | Msa1150720:intron | 45.0% |
| ! | GATTCAGAAAGTGCGTCAAG+AGG | + | chr7_4:34525559-34525578 | Msa1150720:CDS | 45.0% |
| AAAGTGCGTCAAGAGGAAAC+TGG | + | chr7_4:34525566-34525585 | Msa1150720:CDS | 45.0% | |
| ! | CTTGAGGAGCATATTTCCCT+CGG | - | chr7_4:34525734-34525753 | None:intergenic | 45.0% |
| ! | TTGTGATTCTGTCGTTTGGC+TGG | - | chr7_4:34526176-34526195 | None:intergenic | 45.0% |
| TGCAGTGTCCGTGTCGTATT+CGG | + | chr7_4:34524294-34524313 | Msa1150720:intron | 50.0% | |
| TCTCTGCGCTCACCAATGAA+TGG | + | chr7_4:34524520-34524539 | Msa1150720:CDS | 50.0% | |
| CCTGAATCTCGTGTACTCTG+AGG | - | chr7_4:34525203-34525222 | None:intergenic | 50.0% | |
| CCTCAGAGTACACGAGATTC+AGG | + | chr7_4:34525200-34525219 | Msa1150720:CDS | 50.0% | |
| TCAAGAGGAAACTGGTGGCA+AGG | + | chr7_4:34525574-34525593 | Msa1150720:CDS | 50.0% | |
| CGAGGGAAATATGCTCCTCA+AGG | + | chr7_4:34525732-34525751 | Msa1150720:three_prime_UTR | 50.0% | |
| TCGGCCATGTGGATTTCACA+AGG | + | chr7_4:34525831-34525850 | Msa1150720:intron | 50.0% | |
| ATGCCACGAGACCATGCAAT+TGG | + | chr7_4:34525932-34525951 | Msa1150720:intron | 50.0% | |
| TGCCACGAGACCATGCAATT+GGG | + | chr7_4:34525933-34525952 | Msa1150720:intron | 50.0% | |
| TTCCCAATTGCATGGTCTCG+TGG | - | chr7_4:34525938-34525957 | None:intergenic | 50.0% | |
| ! | TCCTCGGATTAGGCGTGTCT+CGG | + | chr7_4:34524176-34524195 | Msa1150720:intron | 55.0% |
| GTGCGTCAAGAGGAAACTGG+TGG | + | chr7_4:34525569-34525588 | Msa1150720:CDS | 55.0% | |
| TTGCATGGTCTCGTGGCATC+AGG | - | chr7_4:34525931-34525950 | None:intergenic | 55.0% | |
| ACCGAGACACGCCTAATCCG+AGG | - | chr7_4:34524180-34524199 | None:intergenic | 60.0% | |
| CGCGGACACCGAATACGACA+CGG | - | chr7_4:34524305-34524324 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 34523758 | 34526458 | 34523758 | ID=Msa1150720;Name=Msa1150720 |
| chr7_4 | mRNA | 34523758 | 34526458 | 34523758 | ID=Msa1150720-mRNA-1;Parent=Msa1150720;Name=Msa1150720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=217|1|1|1|0.8|0.5|6|434|156 |
| chr7_4 | exon | 34523758 | 34524109 | 34523758 | ID=Msa1150720-mRNA-1:exon:8189;Parent=Msa1150720-mRNA-1 |
| chr7_4 | exon | 34524505 | 34524586 | 34524505 | ID=Msa1150720-mRNA-1:exon:8190;Parent=Msa1150720-mRNA-1 |
| chr7_4 | exon | 34525060 | 34525235 | 34525060 | ID=Msa1150720-mRNA-1:exon:8191;Parent=Msa1150720-mRNA-1 |
| chr7_4 | exon | 34525535 | 34525595 | 34525535 | ID=Msa1150720-mRNA-1:exon:8192;Parent=Msa1150720-mRNA-1 |
| chr7_4 | exon | 34525701 | 34525778 | 34525701 | ID=Msa1150720-mRNA-1:exon:8193;Parent=Msa1150720-mRNA-1 |
| chr7_4 | exon | 34526086 | 34526458 | 34526086 | ID=Msa1150720-mRNA-1:exon:8194;Parent=Msa1150720-mRNA-1 |
| chr7_4 | five_prime_UTR | 34523758 | 34523974 | 34523758 | ID=Msa1150720-mRNA-1:five_prime_utr;Parent=Msa1150720-mRNA-1 |
| chr7_4 | CDS | 34523975 | 34524109 | 34523975 | ID=Msa1150720-mRNA-1:cds;Parent=Msa1150720-mRNA-1 |
| chr7_4 | CDS | 34524505 | 34524586 | 34524505 | ID=Msa1150720-mRNA-1:cds;Parent=Msa1150720-mRNA-1 |
| chr7_4 | CDS | 34525060 | 34525235 | 34525060 | ID=Msa1150720-mRNA-1:cds;Parent=Msa1150720-mRNA-1 |
| chr7_4 | CDS | 34525535 | 34525595 | 34525535 | ID=Msa1150720-mRNA-1:cds;Parent=Msa1150720-mRNA-1 |
| chr7_4 | CDS | 34525701 | 34525717 | 34525701 | ID=Msa1150720-mRNA-1:cds;Parent=Msa1150720-mRNA-1 |
| chr7_4 | three_prime_UTR | 34525718 | 34525778 | 34525718 | ID=Msa1150720-mRNA-1:three_prime_utr;Parent=Msa1150720-mRNA-1 |
| chr7_4 | three_prime_UTR | 34526086 | 34526458 | 34526086 | ID=Msa1150720-mRNA-1:three_prime_utr;Parent=Msa1150720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
