Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043060 | XP_003623159.1 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 2.52e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043060 | G7L5L0 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 1.21e-93 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006710 | Msa1043060 | 0.837214 | 5.930188e-57 | -8.615850e-47 |
| Msa1043060 | Msa1150720 | 0.877311 | 6.956573e-69 | -8.615850e-47 |
| Msa1043060 | Msa1448620 | 0.804325 | 2.280545e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043060 | MtrunA17_Chr7g0240431 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 2.32e-97 | 277 |
| Msa1043060 | MtrunA17_Chr4g0008731 | 55.625 | 160 | 63 | 4 | 1 | 156 | 1 | 156 | 7.18e-50 | 157 |
| Msa1043060 | MtrunA17_Chr4g0008721 | 44.375 | 160 | 76 | 5 | 1 | 156 | 1 | 151 | 3.81e-33 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043060 | AT5G02020.1 | 54.717 | 159 | 59 | 4 | 1 | 156 | 1 | 149 | 2.32e-37 | 125 |
| Msa1043060 | AT5G59080.2 | 43.827 | 162 | 58 | 4 | 1 | 156 | 1 | 135 | 2.80e-25 | 94.4 |
| Msa1043060 | AT5G59080.1 | 43.827 | 162 | 58 | 4 | 1 | 156 | 1 | 135 | 2.80e-25 | 94.4 |
| Msa1043060 | AT2G39855.2 | 42.143 | 140 | 59 | 6 | 21 | 156 | 21 | 142 | 1.12e-21 | 85.5 |
| Msa1043060 | AT2G39855.4 | 42.143 | 140 | 59 | 6 | 21 | 156 | 21 | 142 | 1.12e-21 | 85.5 |
| Msa1043060 | AT5G02020.2 | 49.206 | 126 | 54 | 3 | 1 | 123 | 1 | 119 | 1.96e-20 | 82.0 |
| Msa1043060 | AT3G55646.1 | 42.857 | 126 | 53 | 5 | 32 | 156 | 39 | 146 | 2.23e-18 | 77.0 |
| Msa1043060 | AT3G46880.2 | 36.943 | 157 | 57 | 4 | 1 | 156 | 1 | 116 | 4.52e-17 | 72.8 |
| Msa1043060 | AT2G39855.3 | 61.905 | 63 | 18 | 2 | 95 | 156 | 60 | 117 | 5.00e-17 | 72.8 |
Find 57 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTTGAGTAGCAATTT+TGG | 0.163510 | 7_2:-902306 | None:intergenic |
| AAAATAGAAATTACAATATA+GGG | 0.223199 | 7_2:-904130 | None:intergenic |
| ATGCATATTTGCAGATAAAT+AGG | 0.258495 | 7_2:+903807 | Msa1043060:intron |
| TCTTTCACTTCTGAACTCTT+TGG | 0.272651 | 7_2:+901761 | Msa1043060:CDS |
| TTGCATAAATCCTCTTCTTC+TGG | 0.281952 | 7_2:+901794 | Msa1043060:CDS |
| CTTAGCTCATCAATCTATTA+TGG | 0.292281 | 7_2:+902890 | Msa1043060:CDS |
| TAAAATAGAAATTACAATAT+AGG | 0.292817 | 7_2:-904131 | None:intergenic |
| CTTCACTCTGTTTGTTTCCT+AGG | 0.303970 | 7_2:+901580 | Msa1043060:five_prime_UTR |
| ATGGAAGGAAGGAAACAATT+TGG | 0.335652 | 7_2:+901716 | Msa1043060:CDS |
| CCTCAGAGTACACAAGATTC+AGG | 0.378048 | 7_2:+902935 | Msa1043060:CDS |
| AGAGGATTTATGCAAGTCAT+TGG | 0.396393 | 7_2:-901786 | None:intergenic |
| TTGTGATTCTGTCGTTTAGC+TGG | 0.398992 | 7_2:-903922 | None:intergenic |
| TGTAAACAAGTTTGCAAATG+AGG | 0.399940 | 7_2:-901615 | None:intergenic |
| GTATAGGAATATGTATTATC+AGG | 0.403619 | 7_2:+904044 | Msa1043060:three_prime_UTR |
| AACTCAGAACAAAACAAATA+AGG | 0.412533 | 7_2:+902823 | Msa1043060:CDS |
| CTTTATCAGTACAAGAAAGA+TGG | 0.423454 | 7_2:+903261 | Msa1043060:intron |
| TATATAATAACTATAACTAT+AGG | 0.439201 | 7_2:-903951 | None:intergenic |
| GAAATATACTCATAAAATTA+CGG | 0.444375 | 7_2:-904168 | None:intergenic |
| TCTCTGCGCTCACCAATGAA+TGG | 0.446213 | 7_2:+902257 | Msa1043060:CDS |
| ATGATATTGTATAAGTTGTA+TGG | 0.453106 | 7_2:+904017 | Msa1043060:three_prime_UTR |
| CTCTGCGCTCACCAATGAAT+GGG | 0.458318 | 7_2:+902258 | Msa1043060:CDS |
| TTTGTGATGATTTAGGTGTT+TGG | 0.464470 | 7_2:+902227 | Msa1043060:intron |
| TAATGCAGATTACATCAGTA+AGG | 0.470940 | 7_2:+902787 | Msa1043060:intron |
| AAGAGAACAGAAGTTTGAAA+AGG | 0.475721 | 7_2:-901545 | None:intergenic |
| TACGAGTTTCTTGATCCAAA+TGG | 0.479735 | 7_2:+903492 | Msa1043060:three_prime_UTR |
| AGGTTGTAGACTAGAGAGAG+AGG | 0.493028 | 7_2:-901508 | None:intergenic |
| TACATCAGTAAGGGAAATGA+TGG | 0.503771 | 7_2:+902797 | Msa1043060:CDS |
| AAAAGGAGAGACACGTGAAA+AGG | 0.505203 | 7_2:-901528 | None:intergenic |
| CTAGGTACATTATTCTGTAC+AGG | 0.510854 | 7_2:-903992 | None:intergenic |
| TAAGTTGTATGGTATAGTAT+AGG | 0.514490 | 7_2:+904028 | Msa1043060:three_prime_UTR |
| AGATTCAGGATTGAACACTA+TGG | 0.537760 | 7_2:+902949 | Msa1043060:CDS |
| CATAATAGATTGATGAGCTA+AGG | 0.541662 | 7_2:-902889 | None:intergenic |
| CTTGAGGAGCATATTTCCCT+CGG | 0.551233 | 7_2:-903466 | None:intergenic |
| ACAAACAGAGTGAAGAAAGA+AGG | 0.555856 | 7_2:-901572 | None:intergenic |
| AACTCCAAAATTGCTACTCA+AGG | 0.556191 | 7_2:+902302 | Msa1043060:CDS |
| TTAAAAGAGTACACTTGCCG+AGG | 0.565396 | 7_2:+903449 | Msa1043060:exon |
| AAATAGAAATTACAATATAG+GGG | 0.566541 | 7_2:-904129 | None:intergenic |
| AAAGTGCGTCAAGAGGAAAC+TGG | 0.578629 | 7_2:+903301 | Msa1043060:CDS |
| TGCAAACTTGTTTACAGTGG+CGG | 0.579243 | 7_2:+901622 | Msa1043060:five_prime_UTR |
| AAACTTGTTTACAGTGGCGG+TGG | 0.585550 | 7_2:+901625 | Msa1043060:five_prime_UTR |
| TGCAGTGACAAAGTTGTGAA+TGG | 0.590905 | 7_2:+903886 | Msa1043060:three_prime_UTR |
| GGTTGTAGACTAGAGAGAGA+GGG | 0.597418 | 7_2:-901507 | None:intergenic |
| CGAGGGAAATATGCTCCTCA+AGG | 0.606604 | 7_2:+903467 | Msa1043060:three_prime_UTR |
| GAGGACGAGAATATACGTCT+TGG | 0.607032 | 7_2:-902916 | None:intergenic |
| TAAAAGAGTACACTTGCCGA+GGG | 0.607782 | 7_2:+903450 | Msa1043060:exon |
| TTTGGAGTTTGATTCTTCAG+TGG | 0.607917 | 7_2:-902288 | None:intergenic |
| AATGCAGATTACATCAGTAA+GGG | 0.615541 | 7_2:+902788 | Msa1043060:intron |
| GATTCAGAAAGTGCGTCAAG+AGG | 0.622488 | 7_2:+903294 | Msa1043060:CDS |
| AGCTCATCAATCTATTATGG+TGG | 0.623150 | 7_2:+902893 | Msa1043060:CDS |
| TCAAGAGGAAACTGGTGGCA+AGG | 0.623511 | 7_2:+903309 | Msa1043060:CDS |
| ATTTGCAAACTTGTTTACAG+TGG | 0.625289 | 7_2:+901619 | Msa1043060:five_prime_UTR |
| ACTTATACAATATCATGACT+AGG | 0.634274 | 7_2:-904010 | None:intergenic |
| TATCAGTACAAGAAAGATGG+AGG | 0.660585 | 7_2:+903264 | Msa1043060:intron |
| ATTGATGAGCTAAGGTGACA+TGG | 0.676086 | 7_2:-902881 | None:intergenic |
| CAAGAAACTCGTATACCTTG+AGG | 0.686916 | 7_2:-903482 | None:intergenic |
| CCTGAATCTTGTGTACTCTG+AGG | 0.691423 | 7_2:-902935 | None:intergenic |
| GTGCGTCAAGAGGAAACTGG+TGG | 0.699548 | 7_2:+903304 | Msa1043060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAATAACTATAACTAT+AGG | - | chr7_2:903954-903973 | None:intergenic | 10.0% |
| !! | AAAATAGAAATTACAATATA+GGG | - | chr7_2:904133-904152 | None:intergenic | 10.0% |
| !! | TAAAATAGAAATTACAATAT+AGG | - | chr7_2:904134-904153 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTCATTTTTTTTA+TGG | + | chr7_2:901856-901875 | Msa1043060:intron | 15.0% |
| !!! | TGTGTTTTCATTTTTTTTAT+GGG | + | chr7_2:901857-901876 | Msa1043060:intron | 15.0% |
| !! | GTATAGTTTAATAATCATTA+TGG | + | chr7_2:902153-902172 | Msa1043060:intron | 15.0% |
| !!! | ATTTTATTAAAACCTCATTT+TGG | - | chr7_2:902398-902417 | None:intergenic | 15.0% |
| !!! | AAGTAGTATAGTTTTTATAA+GGG | + | chr7_2:902723-902742 | Msa1043060:intron | 15.0% |
| !! | TATATTGTCTAATAAATTTG+TGG | + | chr7_2:903339-903358 | Msa1043060:intron | 15.0% |
| !! | AAGTTCTTAAATTTATGATT+CGG | + | chr7_2:903547-903566 | Msa1043060:intron | 15.0% |
| !! | AAATAGAAATTACAATATAG+GGG | - | chr7_2:904132-904151 | None:intergenic | 15.0% |
| !! | GAAATATACTCATAAAATTA+CGG | - | chr7_2:904171-904190 | None:intergenic | 15.0% |
| !!! | AAGTTGTTTTGAGATTTTTA+TGG | + | chr7_2:902204-902223 | Msa1043060:intron | 20.0% |
| !!! | CAAGTAGTATAGTTTTTATA+AGG | + | chr7_2:902722-902741 | Msa1043060:intron | 20.0% |
| !!! | AAAAAATGGTATTTTCTCTA+TGG | + | chr7_2:903213-903232 | Msa1043060:intron | 20.0% |
| !! | ATGATATTGTATAAGTTGTA+TGG | + | chr7_2:904017-904036 | Msa1043060:three_prime_UTR | 20.0% |
| ! | TATGGTTTCGTATATGTATA+TGG | + | chr7_2:902171-902190 | Msa1043060:intron | 25.0% |
| !! | TTTATGGTTTGTGATGATTT+AGG | + | chr7_2:902220-902239 | Msa1043060:intron | 25.0% |
| ! | GCAAATATCTATAAATAGAG+AGG | - | chr7_2:902349-902368 | None:intergenic | 25.0% |
| ! | GTTTGTATTAATCCAAAATG+AGG | + | chr7_2:902383-902402 | Msa1043060:intron | 25.0% |
| !! | AATAGCGATTTGTTCAAATT+CGG | - | chr7_2:902447-902466 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTCTCATTGTCTT+GGG | + | chr7_2:902756-902775 | Msa1043060:intron | 25.0% |
| ! | AACTCAGAACAAAACAAATA+AGG | + | chr7_2:902823-902842 | Msa1043060:CDS | 25.0% |
| ! | TGATAAAATGAGTTACTAGA+TGG | + | chr7_2:903093-903112 | Msa1043060:intron | 25.0% |
| !!! | CACTTTTTGAATCGAAAAAA+TGG | + | chr7_2:903199-903218 | Msa1043060:intron | 25.0% |
| !! | TGAAAGCTAATCACATATTT+TGG | - | chr7_2:903521-903540 | None:intergenic | 25.0% |
| !! | TACATACTGAATTACTGATT+TGG | - | chr7_2:903619-903638 | None:intergenic | 25.0% |
| ! | GTACATGTAATTTACCAATT+TGG | + | chr7_2:903636-903655 | Msa1043060:intron | 25.0% |
| ! | ATGCATATTTGCAGATAAAT+AGG | + | chr7_2:903807-903826 | Msa1043060:intron | 25.0% |
| ! | ACTTATACAATATCATGACT+AGG | - | chr7_2:904013-904032 | None:intergenic | 25.0% |
| ! | TAAGTTGTATGGTATAGTAT+AGG | + | chr7_2:904028-904047 | Msa1043060:three_prime_UTR | 25.0% |
| ! | GTATAGGAATATGTATTATC+AGG | + | chr7_2:904044-904063 | Msa1043060:three_prime_UTR | 25.0% |
| !! | TATTATCAGGTACTTTTATG+TGG | + | chr7_2:904057-904076 | Msa1043060:three_prime_UTR | 25.0% |
| AAGAGAACAGAAGTTTGAAA+AGG | - | chr7_2:901548-901567 | None:intergenic | 30.0% | |
| TGTAAACAAGTTTGCAAATG+AGG | - | chr7_2:901618-901637 | None:intergenic | 30.0% | |
| ! | ATTTGCAAACTTGTTTACAG+TGG | + | chr7_2:901619-901638 | Msa1043060:five_prime_UTR | 30.0% |
| !! | CAAGTGTTGAAGCAAAAAAA+TGG | + | chr7_2:901697-901716 | Msa1043060:exon | 30.0% |
| TGTTGAAGCAAAAAAATGGA+AGG | + | chr7_2:901701-901720 | Msa1043060:exon | 30.0% | |
| ! | TATTTTCTCTCCATCTTCTA+AGG | + | chr7_2:901829-901848 | Msa1043060:CDS | 30.0% |
| ACACAAAAAACCTTAGAAGA+TGG | - | chr7_2:901842-901861 | None:intergenic | 30.0% | |
| TTTGTGATGATTTAGGTGTT+TGG | + | chr7_2:902227-902246 | Msa1043060:intron | 30.0% | |
| !! | GAGGTTTTAATAAAATCCTG+TGG | + | chr7_2:902402-902421 | Msa1043060:intron | 30.0% |
| CATTGAGATCAAGGAAAATA+GGG | - | chr7_2:902614-902633 | None:intergenic | 30.0% | |
| ACATTGAGATCAAGGAAAAT+AGG | - | chr7_2:902615-902634 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTTTCTCATTGTCT+TGG | + | chr7_2:902755-902774 | Msa1043060:intron | 30.0% |
| TAATGCAGATTACATCAGTA+AGG | + | chr7_2:902787-902806 | Msa1043060:intron | 30.0% | |
| AATGCAGATTACATCAGTAA+GGG | + | chr7_2:902788-902807 | Msa1043060:intron | 30.0% | |
| CATAATAGATTGATGAGCTA+AGG | - | chr7_2:902892-902911 | None:intergenic | 30.0% | |
| CTTAGCTCATCAATCTATTA+TGG | + | chr7_2:902890-902909 | Msa1043060:CDS | 30.0% | |
| AACATAACAAACATTTAGCG+CGG | + | chr7_2:903027-903046 | Msa1043060:intron | 30.0% | |
| TTCTGTCTTGAAGTCTATAT+AGG | - | chr7_2:903136-903155 | None:intergenic | 30.0% | |
| CTTTATCAGTACAAGAAAGA+TGG | + | chr7_2:903261-903280 | Msa1043060:intron | 30.0% | |
| TGTGGTGTAAACATTGTATT+CGG | + | chr7_2:903357-903376 | Msa1043060:intron | 30.0% | |
| TTATAGACAAGTTACAGCAT+AGG | - | chr7_2:903412-903431 | None:intergenic | 30.0% | |
| !!! | CACATATTTTGGTTACCATT+TGG | - | chr7_2:903510-903529 | None:intergenic | 30.0% |
| ! | TGAAAGGTTTGAAATCAACT+TGG | + | chr7_2:903593-903612 | Msa1043060:intron | 30.0% |
| GATTATGTTAATCACGGATT+TGG | - | chr7_2:903738-903757 | None:intergenic | 30.0% | |
| GGTCAAGATTATGTTAATCA+CGG | - | chr7_2:903744-903763 | None:intergenic | 30.0% | |
| TATCTAGCAGTTTCAAAACA+TGG | - | chr7_2:903765-903784 | None:intergenic | 30.0% | |
| !! | TGTTCATCTTTTTAGCAACA+TGG | + | chr7_2:903848-903867 | Msa1043060:three_prime_UTR | 30.0% |
| !!! | ATGCTAGCTTTTGCATTAAT+GGG | + | chr7_2:904083-904102 | Msa1043060:three_prime_UTR | 30.0% |
| ACAAACAGAGTGAAGAAAGA+AGG | - | chr7_2:901575-901594 | None:intergenic | 35.0% | |
| !!! | TGAGGTTTTTTGCTTTTCCT+AGG | - | chr7_2:901600-901619 | None:intergenic | 35.0% |
| GAAGCAAAAAAATGGAAGGA+AGG | + | chr7_2:901705-901724 | Msa1043060:exon | 35.0% | |
| ATGGAAGGAAGGAAACAATT+TGG | + | chr7_2:901716-901735 | Msa1043060:CDS | 35.0% | |
| TCTTTCACTTCTGAACTCTT+TGG | + | chr7_2:901761-901780 | Msa1043060:CDS | 35.0% | |
| AGAGGATTTATGCAAGTCAT+TGG | - | chr7_2:901789-901808 | None:intergenic | 35.0% | |
| TTGCATAAATCCTCTTCTTC+TGG | + | chr7_2:901794-901813 | Msa1043060:CDS | 35.0% | |
| GTCAAAAATTCCAGAAGAAG+AGG | - | chr7_2:901807-901826 | None:intergenic | 35.0% | |
| TTATCTATGAAGCCCAGAAA+CGG | + | chr7_2:901954-901973 | Msa1043060:intron | 35.0% | |
| ! | TTTGGAGTTTGATTCTTCAG+TGG | - | chr7_2:902291-902310 | None:intergenic | 35.0% |
| AACTCCAAAATTGCTACTCA+AGG | + | chr7_2:902302-902321 | Msa1043060:CDS | 35.0% | |
| ! | TCAACCTTGAGTAGCAATTT+TGG | - | chr7_2:902309-902328 | None:intergenic | 35.0% |
| AGTAACAGCTATAGCACTAT+AGG | + | chr7_2:902503-902522 | Msa1043060:intron | 35.0% | |
| GTAACAGCTATAGCACTATA+GGG | + | chr7_2:902504-902523 | Msa1043060:intron | 35.0% | |
| TTTATCGGTATTGTCAATCG+CGG | - | chr7_2:902558-902577 | None:intergenic | 35.0% | |
| ! | GTGCTACTATGTGACTTTAT+CGG | - | chr7_2:902573-902592 | None:intergenic | 35.0% |
| GAAAATAGGGACAACAAGAA+AGG | - | chr7_2:902601-902620 | None:intergenic | 35.0% | |
| CACTCTAAACATTGAGATCA+AGG | - | chr7_2:902623-902642 | None:intergenic | 35.0% | |
| TACATCAGTAAGGGAAATGA+TGG | + | chr7_2:902797-902816 | Msa1043060:CDS | 35.0% | |
| AGCTCATCAATCTATTATGG+TGG | + | chr7_2:902893-902912 | Msa1043060:CDS | 35.0% | |
| AGATTCAGGATTGAACACTA+TGG | + | chr7_2:902949-902968 | Msa1043060:CDS | 35.0% | |
| CTTGAAGTCTATATAGGACT+AGG | - | chr7_2:903130-903149 | None:intergenic | 35.0% | |
| AGACAGAATATTGAGCCTAA+TGG | + | chr7_2:903148-903167 | Msa1043060:intron | 35.0% | |
| ! | ATGGTATTTTCTCTATGGCT+CGG | + | chr7_2:903218-903237 | Msa1043060:intron | 35.0% |
| TATCAGTACAAGAAAGATGG+AGG | + | chr7_2:903264-903283 | Msa1043060:intron | 35.0% | |
| CAAGTTACAGCATAGGAAAT+CGG | - | chr7_2:903405-903424 | None:intergenic | 35.0% | |
| ! | GCTGTAACTTGTCTATAAAC+AGG | + | chr7_2:903414-903433 | Msa1043060:intron | 35.0% |
| TACGAGTTTCTTGATCCAAA+TGG | + | chr7_2:903492-903511 | Msa1043060:three_prime_UTR | 35.0% | |
| ! | AAATTTATGATTCGGCCATG+TGG | + | chr7_2:903555-903574 | Msa1043060:intron | 35.0% |
| GATTTCACAAGGACTATGAA+AGG | + | chr7_2:903577-903596 | Msa1043060:intron | 35.0% | |
| !! | CATCTTTTTAGCAACATGGA+AGG | + | chr7_2:903852-903871 | Msa1043060:three_prime_UTR | 35.0% |
| CTAGGTACATTATTCTGTAC+AGG | - | chr7_2:903995-904014 | None:intergenic | 35.0% | |
| !!! | GATGCTAGCTTTTGCATTAA+TGG | + | chr7_2:904082-904101 | Msa1043060:three_prime_UTR | 35.0% |
| AAAAGGAGAGACACGTGAAA+AGG | - | chr7_2:901531-901550 | None:intergenic | 40.0% | |
| CTTCACTCTGTTTGTTTCCT+AGG | + | chr7_2:901580-901599 | Msa1043060:five_prime_UTR | 40.0% | |
| ! | TGCAAACTTGTTTACAGTGG+CGG | + | chr7_2:901622-901641 | Msa1043060:five_prime_UTR | 40.0% |
| TTGTCAATCGCGGAAAATAG+TGG | - | chr7_2:902548-902567 | None:intergenic | 40.0% | |
| ATTGATGAGCTAAGGTGACA+TGG | - | chr7_2:902884-902903 | None:intergenic | 40.0% | |
| GAATATTGAGCCTAATGGCT+AGG | + | chr7_2:903153-903172 | Msa1043060:intron | 40.0% | |
| CAGAAATCATCCTAGCCATT+AGG | - | chr7_2:903166-903185 | None:intergenic | 40.0% | |
| TGGCTAGGATGATTTCTGAA+TGG | + | chr7_2:903168-903187 | Msa1043060:intron | 40.0% | |
| ! | TTAAAAGAGTACACTTGCCG+AGG | + | chr7_2:903449-903468 | Msa1043060:exon | 40.0% |
| ! | TAAAAGAGTACACTTGCCGA+GGG | + | chr7_2:903450-903469 | Msa1043060:exon | 40.0% |
| CAAGAAACTCGTATACCTTG+AGG | - | chr7_2:903485-903504 | None:intergenic | 40.0% | |
| TAGTCCTTGTGAAATCCACA+TGG | - | chr7_2:903573-903592 | None:intergenic | 40.0% | |
| TGGCATCAGGAAATCCAAAT+TGG | - | chr7_2:903653-903672 | None:intergenic | 40.0% | |
| GCGTAAATTTCCCAATTGCA+TGG | - | chr7_2:903681-903700 | None:intergenic | 40.0% | |
| ATGTGCGATTACTTGACTAC+AGG | + | chr7_2:903708-903727 | Msa1043060:intron | 40.0% | |
| TGTGCGATTACTTGACTACA+GGG | + | chr7_2:903709-903728 | Msa1043060:intron | 40.0% | |
| TGCAGTGACAAAGTTGTGAA+TGG | + | chr7_2:903886-903905 | Msa1043060:three_prime_UTR | 40.0% | |
| ! | TTGTGATTCTGTCGTTTAGC+TGG | - | chr7_2:903925-903944 | None:intergenic | 40.0% |
| !!! | GGGTGATGCTCTATTTTTAG+TGG | + | chr7_2:904103-904122 | Msa1043060:three_prime_UTR | 40.0% |
| GGTTGTAGACTAGAGAGAGA+GGG | - | chr7_2:901510-901529 | None:intergenic | 45.0% | |
| AGGTTGTAGACTAGAGAGAG+AGG | - | chr7_2:901511-901530 | None:intergenic | 45.0% | |
| ! | AAACTTGTTTACAGTGGCGG+TGG | + | chr7_2:901625-901644 | Msa1043060:five_prime_UTR | 45.0% |
| GACATGTATGTGTCGTGTCA+CGG | - | chr7_2:902079-902098 | None:intergenic | 45.0% | |
| GTGACACGACACATACATGT+CGG | + | chr7_2:902078-902097 | Msa1043060:intron | 45.0% | |
| ! | GTGGCAGTTTTCCCATTCAT+TGG | - | chr7_2:902272-902291 | None:intergenic | 45.0% |
| ! | CGTCTGTTATTTGACACCAC+AGG | - | chr7_2:902421-902440 | None:intergenic | 45.0% |
| GAGGACGAGAATATACGTCT+TGG | - | chr7_2:902919-902938 | None:intergenic | 45.0% | |
| CCTGAATCTTGTGTACTCTG+AGG | - | chr7_2:902938-902957 | None:intergenic | 45.0% | |
| CCTCAGAGTACACAAGATTC+AGG | + | chr7_2:902935-902954 | Msa1043060:CDS | 45.0% | |
| ! | ATGGCTCGGAATGACTAACA+TGG | + | chr7_2:903232-903251 | Msa1043060:intron | 45.0% |
| ! | GATTCAGAAAGTGCGTCAAG+AGG | + | chr7_2:903294-903313 | Msa1043060:CDS | 45.0% |
| AAAGTGCGTCAAGAGGAAAC+TGG | + | chr7_2:903301-903320 | Msa1043060:CDS | 45.0% | |
| ! | CTTGAGGAGCATATTTCCCT+CGG | - | chr7_2:903469-903488 | None:intergenic | 45.0% |
| TGAAGCCCAGAAACGGACAT+CGG | + | chr7_2:901961-901980 | Msa1043060:intron | 50.0% | |
| ATCGAGACACGCCTAATCTG+AGG | + | chr7_2:902103-902122 | Msa1043060:intron | 50.0% | |
| GCACGAACACTCCTCAGATT+AGG | - | chr7_2:902117-902136 | None:intergenic | 50.0% | |
| TCTCTGCGCTCACCAATGAA+TGG | + | chr7_2:902257-902276 | Msa1043060:CDS | 50.0% | |
| CTCTGCGCTCACCAATGAAT+GGG | + | chr7_2:902258-902277 | Msa1043060:CDS | 50.0% | |
| TCAAGAGGAAACTGGTGGCA+AGG | + | chr7_2:903309-903328 | Msa1043060:CDS | 50.0% | |
| CGAGGGAAATATGCTCCTCA+AGG | + | chr7_2:903467-903486 | Msa1043060:three_prime_UTR | 50.0% | |
| TCGGCCATGTGGATTTCACA+AGG | + | chr7_2:903566-903585 | Msa1043060:intron | 50.0% | |
| ATGCCACGAGACCATGCAAT+TGG | + | chr7_2:903667-903686 | Msa1043060:intron | 50.0% | |
| TGCCACGAGACCATGCAATT+GGG | + | chr7_2:903668-903687 | Msa1043060:intron | 50.0% | |
| TTCCCAATTGCATGGTCTCG+TGG | - | chr7_2:903673-903692 | None:intergenic | 50.0% | |
| CGTGTCCGATGTCCGTTTCT+GGG | - | chr7_2:901969-901988 | None:intergenic | 55.0% | |
| TCGTGTCCGATGTCCGTTTC+TGG | - | chr7_2:901970-901989 | None:intergenic | 55.0% | |
| GTGCGTCAAGAGGAAACTGG+TGG | + | chr7_2:903304-903323 | Msa1043060:CDS | 55.0% | |
| TTGCATGGTCTCGTGGCATC+AGG | - | chr7_2:903666-903685 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 901501 | 904196 | 901501 | ID=Msa1043060;Name=Msa1043060 |
| chr7_2 | mRNA | 901501 | 904196 | 901501 | ID=Msa1043060-mRNA-1;Parent=Msa1043060;Name=Msa1043060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=215|1|1|1|0.8|0.66|6|437|156 |
| chr7_2 | exon | 901501 | 901850 | 901501 | ID=Msa1043060-mRNA-1:exon:130;Parent=Msa1043060-mRNA-1 |
| chr7_2 | exon | 902242 | 902323 | 902242 | ID=Msa1043060-mRNA-1:exon:131;Parent=Msa1043060-mRNA-1 |
| chr7_2 | exon | 902795 | 902970 | 902795 | ID=Msa1043060-mRNA-1:exon:132;Parent=Msa1043060-mRNA-1 |
| chr7_2 | exon | 903270 | 903330 | 903270 | ID=Msa1043060-mRNA-1:exon:133;Parent=Msa1043060-mRNA-1 |
| chr7_2 | exon | 903436 | 903513 | 903436 | ID=Msa1043060-mRNA-1:exon:134;Parent=Msa1043060-mRNA-1 |
| chr7_2 | exon | 903821 | 904196 | 903821 | ID=Msa1043060-mRNA-1:exon:135;Parent=Msa1043060-mRNA-1 |
| chr7_2 | five_prime_UTR | 901501 | 901715 | 901501 | ID=Msa1043060-mRNA-1:five_prime_utr;Parent=Msa1043060-mRNA-1 |
| chr7_2 | CDS | 901716 | 901850 | 901716 | ID=Msa1043060-mRNA-1:cds;Parent=Msa1043060-mRNA-1 |
| chr7_2 | CDS | 902242 | 902323 | 902242 | ID=Msa1043060-mRNA-1:cds;Parent=Msa1043060-mRNA-1 |
| chr7_2 | CDS | 902795 | 902970 | 902795 | ID=Msa1043060-mRNA-1:cds;Parent=Msa1043060-mRNA-1 |
| chr7_2 | CDS | 903270 | 903330 | 903270 | ID=Msa1043060-mRNA-1:cds;Parent=Msa1043060-mRNA-1 |
| chr7_2 | CDS | 903436 | 903452 | 903436 | ID=Msa1043060-mRNA-1:cds;Parent=Msa1043060-mRNA-1 |
| chr7_2 | three_prime_UTR | 903453 | 903513 | 903453 | ID=Msa1043060-mRNA-1:three_prime_utr;Parent=Msa1043060-mRNA-1 |
| chr7_2 | three_prime_UTR | 903821 | 904196 | 903821 | ID=Msa1043060-mRNA-1:three_prime_utr;Parent=Msa1043060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
