AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153130 MtrunA17_Chr7g0243541 96.277 188 7 0 9 196 222 409 6.58e-130 371
Msa1153130 MtrunA17_Chr4g0004981 87.209 172 22 0 9 180 275 446 9.56e-108 316
Msa1153130 MtrunA17_Chr8g0385291 47.024 168 85 3 5 171 327 491 7.21e-45 155
Msa1153130 MtrunA17_Chr4g0014901 46.512 172 89 3 5 175 418 587 9.40e-45 156
Msa1153130 MtrunA17_Chr2g0293201 42.697 178 97 3 10 186 295 468 8.00e-43 149
Msa1153130 MtrunA17_Chr4g0014911 40.000 185 101 5 5 183 285 465 5.00e-40 141
Msa1153130 MtrunA17_Chr3g0131071 43.558 163 88 3 5 166 397 556 5.64e-38 137
Msa1153130 MtrunA17_Chr1g0183881 34.118 170 108 2 10 179 299 464 4.70e-28 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153130 AT3G51670.1 81.395 172 32 0 9 180 233 404 5.37e-101 298
Msa1153130 AT1G30690.1 45.402 174 89 3 5 176 363 532 1.63e-42 149
Msa1153130 AT1G30690.2 45.402 174 89 3 5 176 363 532 1.63e-42 149
Msa1153130 AT1G72160.1 43.575 179 95 5 5 179 312 488 1.79e-39 140
Msa1153130 AT4G09160.2 44.199 181 91 5 5 179 462 638 1.88e-38 139
Msa1153130 AT4G09160.3 44.199 181 91 5 5 179 462 638 1.88e-38 139
Msa1153130 AT4G09160.1 44.199 181 91 5 5 179 487 663 1.88e-38 140
Msa1153130 AT1G22530.2 42.105 171 90 5 5 171 476 641 2.33e-34 128
Msa1153130 AT1G22530.1 42.105 171 90 5 5 171 510 675 2.39e-34 128
Msa1153130 AT1G72150.1 37.356 174 102 5 5 176 402 570 4.31e-31 119

Find 96 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTGAGTTCACTGTTAA+AGG 0.184177 7_4:+39369911 Msa1153130:CDS
GTGAACTCAGAAGCTGGTTT+TGG 0.239830 7_4:-39369902 None:intergenic
TTCCATTAATGTTGTGACTA+TGG 0.244429 7_4:-39368464 None:intergenic
ACCTTGCGAGCAACCATTTC+AGG 0.251411 7_4:-39369096 None:intergenic
AACCATAGTCACAACATTAA+TGG 0.252522 7_4:+39368462 Msa1153130:five_prime_UTR
TTTGAGGTTGGAAATGAAAT+AGG 0.258263 7_4:-39368524 None:intergenic
AAATGTTGTGGATGAAGATT+TGG 0.311161 7_4:+39368765 Msa1153130:five_prime_UTR
TGTAGTTGGAGGCTGGGATT+TGG 0.312615 7_4:+39370660 Msa1153130:CDS
CGGTCGATAACTATGCTTCT+AGG 0.329484 7_4:+39370818 Msa1153130:CDS
GATTCAAGTTACTGATCTTA+AGG 0.332587 7_4:+39369008 Msa1153130:five_prime_UTR
GAGAATATTCCTATTCAATA+TGG 0.337092 7_4:+39369842 Msa1153130:CDS
TGCTTGTGAAGTGTATTTCT+TGG 0.353591 7_4:+39368722 Msa1153130:five_prime_UTR
TTTCATGTTATACTAAATAT+AGG 0.354652 7_4:-39369429 None:intergenic
GAGCAAATTTGTGATCTCTA+AGG 0.357591 7_4:+39369547 Msa1153130:CDS
GTGGTGTATTAGTACTTGTT+TGG 0.360457 7_4:+39371015 Msa1153130:three_prime_UTR
TTCCATGCAGAAATTTCATC+TGG 0.363571 7_4:+39368318 Msa1153130:five_prime_UTR
ATGAAATTTCTGCATGGAAA+TGG 0.364984 7_4:-39368314 None:intergenic
TTAGTTCTTTGAGTCAGAAA+TGG 0.368588 7_4:-39369524 None:intergenic
GAGGAGTGTCCGTGCTTCAT+AGG 0.387523 7_4:-39369249 None:intergenic
AAGGAAAAGCTCTTAACTTC+TGG 0.387606 7_4:+39368577 Msa1153130:five_prime_UTR
TTTCTTGGAGTTTCTAGAAA+TGG 0.388074 7_4:-39368415 None:intergenic
ACAACCCTTAACTCACTCTT+AGG 0.396909 7_4:-39369036 None:intergenic
TCAAGATAACTATCCTGAAA+TGG 0.404693 7_4:+39369083 Msa1153130:five_prime_UTR
GGGAGATTGTAGTTGGAGGC+TGG 0.407967 7_4:+39370653 Msa1153130:CDS
GTGTAGCTAGCTTCTGCATT+CGG 0.418762 7_4:-39370703 None:intergenic
AATTCCTCATTCACCATCAA+TGG 0.429468 7_4:+39368351 Msa1153130:five_prime_UTR
TTTCTAGAAATGGTGTGCTT+AGG 0.436314 7_4:-39368405 None:intergenic
GAGTGATCTTCTTCCATTGA+TGG 0.440321 7_4:-39368364 None:intergenic
ATTTCTTGGAGGAAAGAGTT+TGG 0.442476 7_4:+39368736 Msa1153130:five_prime_UTR
AACAAAAGAAGCAGGCATAA+TGG 0.443455 7_4:+39370789 Msa1153130:CDS
AATGTTGTGGATGAAGATTT+GGG 0.445253 7_4:+39368766 Msa1153130:five_prime_UTR
ACCCCACATGGAACCATTGT+TGG 0.450891 7_4:-39368608 None:intergenic
CTCAATCCACCATATTGAAT+AGG 0.453387 7_4:-39369851 None:intergenic
TGTCTGTATCCGTGCTTCAT+AGG 0.461376 7_4:+39369399 Msa1153130:five_prime_UTR
GGAGATTGTAGTTGGAGGCT+GGG 0.463853 7_4:+39370654 Msa1153130:CDS
AATTGAGTGATTATAGTCAT+TGG 0.469622 7_4:+39371175 Msa1153130:three_prime_UTR
AAAGTGAACATACAAATAGA+AGG 0.473146 7_4:+39369941 Msa1153130:CDS
TCTTCCATTGATGGTGAATG+AGG 0.473222 7_4:-39368355 None:intergenic
ATATGCCTAAGAGTGAGTTA+AGG 0.474991 7_4:+39369031 Msa1153130:five_prime_UTR
ATCAAAGAATTCACCCCACC+AGG 0.485860 7_4:-39368988 None:intergenic
CTACACTATAGAAGTTGAAA+AGG 0.488723 7_4:+39370720 Msa1153130:CDS
TATGCCTAAGAGTGAGTTAA+GGG 0.489546 7_4:+39369032 Msa1153130:five_prime_UTR
TCCTGAAATGGTTGCTCGCA+AGG 0.491332 7_4:+39369095 Msa1153130:five_prime_UTR
ATCAAGTGGGAGATTGTAGT+TGG 0.499306 7_4:+39370646 Msa1153130:CDS
AAAAGCATTGAAACAGTTGA+AGG 0.500192 7_4:+39368558 Msa1153130:five_prime_UTR
TTTCTCTGAGGATTTGAGGT+TGG 0.500900 7_4:-39368536 None:intergenic
TTATGGTGTGTTCAAAGATA+AGG 0.503248 7_4:+39368864 Msa1153130:five_prime_UTR
AGGAGTGTCCGTGCTTCATA+GGG 0.509107 7_4:-39369248 None:intergenic
CCTGTGTGTTACAATCATTA+TGG 0.512283 7_4:+39368847 Msa1153130:five_prime_UTR
TTGGGATTCAAAGAGCTTGA+AGG 0.513195 7_4:+39368784 Msa1153130:five_prime_UTR
TTAACAGTGAACTCAGAAGC+TGG 0.523617 7_4:-39369908 None:intergenic
TACTCATGGGTTTGATAGAG+AGG 0.524005 7_4:+39368819 Msa1153130:five_prime_UTR
AGGGTTCAAGTTCTTGAAAG+AGG 0.527798 7_4:+39368943 Msa1153130:five_prime_UTR
GAGACAGAGAAAAGAAACAT+AGG 0.534947 7_4:-39368188 None:intergenic
AATATTCCTATTCAATATGG+TGG 0.536024 7_4:+39369845 Msa1153130:CDS
AGCAGGCATAATGGTACTCT+CGG 0.541621 7_4:+39370798 Msa1153130:CDS
AGGCTTAATTGCATATCAGA+TGG 0.543533 7_4:-39370895 None:intergenic
TTGTGAAGTGTATTTCTTGG+AGG 0.544581 7_4:+39368725 Msa1153130:five_prime_UTR
TTTACAGTTTAAACCTGGTG+GGG 0.553174 7_4:+39368975 Msa1153130:five_prime_UTR
TAAGCCTCAAAATCAAATAG+TGG 0.553201 7_4:+39370911 Msa1153130:CDS
GGGTTCAAGTTCTTGAAAGA+GGG 0.561782 7_4:+39368944 Msa1153130:five_prime_UTR
TATTGAATAGGAATATTCTC+AGG 0.562576 7_4:-39369839 None:intergenic
TATGAAGCACGGACACTCCT+CGG 0.565018 7_4:+39369251 Msa1153130:five_prime_UTR
TCATTCACAACAAAAGAAGC+AGG 0.565896 7_4:+39370781 Msa1153130:CDS
ACTCATGGGTTTGATAGAGA+GGG 0.567534 7_4:+39368820 Msa1153130:five_prime_UTR
GATCAAACTAACACCCCACA+TGG 0.577251 7_4:-39368620 None:intergenic
TCTGGTGAAATTACCAACAA+TGG 0.579324 7_4:+39368595 Msa1153130:five_prime_UTR
TCCATGCAGAAATTTCATCT+GGG 0.581919 7_4:+39368319 Msa1153130:five_prime_UTR
ACCAACAATGGTTCCATGTG+GGG 0.585763 7_4:+39368607 Msa1153130:five_prime_UTR
AAGATAAGGAAATGTATGAG+AGG 0.586088 7_4:+39368878 Msa1153130:five_prime_UTR
AAGTGGGAGATTGTAGTTGG+AGG 0.586468 7_4:+39370649 Msa1153130:CDS
TACCAACAATGGTTCCATGT+GGG 0.596067 7_4:+39368606 Msa1153130:five_prime_UTR
TGGAAATGGAGAATGAAGGT+TGG 0.597409 7_4:-39368300 None:intergenic
TTTATTTGAAGAAAGTAACA+TGG 0.597660 7_4:+39369162 Msa1153130:five_prime_UTR
GGCGTGTCAGTATCTGTGTC+CGG 0.597828 7_4:+39369371 Msa1153130:intron
CAGAGAAAAGAAACATAGGA+AGG 0.600052 7_4:-39368184 None:intergenic
CTATAGAAGTTGAAAAGGCA+AGG 0.600332 7_4:+39370725 Msa1153130:CDS
GTTTGGTGCTGAAAATGTTG+TGG 0.600996 7_4:+39368753 Msa1153130:five_prime_UTR
AGATAAGGAAATGTATGAGA+GGG 0.605041 7_4:+39368879 Msa1153130:five_prime_UTR
CATACAAATAGAAGGAGTTG+AGG 0.610399 7_4:+39369949 Msa1153130:CDS
ACCCAGATGAAATTTCTGCA+TGG 0.617097 7_4:-39368320 None:intergenic
TGCATGGAAATGGAGAATGA+AGG 0.620881 7_4:-39368304 None:intergenic
TACAACATGCTGAAATACCA+TGG 0.625322 7_4:-39369488 None:intergenic
AGAGTGGTGCAACAATCAAG+TGG 0.626220 7_4:+39370632 Msa1153130:intron
GGACCATTCTGAAAATCACT+AGG 0.626931 7_4:-39369878 None:intergenic
TCTGAGTTCACTGTTAAAGG+AGG 0.633144 7_4:+39369914 Msa1153130:CDS
AAATTTGTGATCTCTAAGGA+AGG 0.636848 7_4:+39369551 Msa1153130:CDS
CACGGATACAGACACGACAC+CGG 0.649561 7_4:-39369390 None:intergenic
TGGGGTGTTAGTTTGATCAA+AGG 0.650022 7_4:+39368625 Msa1153130:five_prime_UTR
ATGTTACACCCTATGAAGCA+CGG 0.654492 7_4:+39369240 Msa1153130:five_prime_UTR
GGTGCAAGTCCTATGAAGCA+CGG 0.656696 7_4:-39369408 None:intergenic
CCATAATGATTGTAACACAC+AGG 0.657026 7_4:-39368847 None:intergenic
GAGTGGTGCAACAATCAAGT+GGG 0.657297 7_4:+39370633 Msa1153130:intron
TGGTGTGCTTAGGATTGACA+TGG 0.671206 7_4:-39368395 None:intergenic
ACCAGAACATGGCTAATCCG+AGG 0.678669 7_4:-39369268 None:intergenic
TTACCAACAATGGTTCCATG+TGG 0.700740 7_4:+39368605 Msa1153130:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATGTTATACTAAATAT+AGG - chr7_4:39369432-39369451 None:intergenic 15.0%
!!! TTTTTTTGTTCAGATTTATA+AGG + chr7_4:39369816-39369835 Msa1153130:intron 15.0%
!!! CTATTTAAAACTTTTACTTA+TGG + chr7_4:39370355-39370374 Msa1153130:intron 15.0%
!!! CTATTTAAAACTTTTACTTA+TGG + chr7_4:39370355-39370374 Msa1153130:intron 15.0%
!! TGATTTAATCTTGTTAAAAA+TGG + chr7_4:39370986-39371005 Msa1153130:three_prime_UTR 15.0%
!! TTTATTTGAAGAAAGTAACA+TGG + chr7_4:39369162-39369181 Msa1153130:five_prime_UTR 20.0%
!!! TTATTTTGGTGTTGTTTATT+TGG + chr7_4:39369194-39369213 Msa1153130:five_prime_UTR 20.0%
!!! CAATTTTCTCATATTATTAG+CGG + chr7_4:39369344-39369363 Msa1153130:intron 20.0%
!!! ATAAACATCATTGATGTTTT+TGG - chr7_4:39369607-39369626 None:intergenic 20.0%
!!! AGATGTAATTTTAGAAAATC+TGG + chr7_4:39369635-39369654 Msa1153130:intron 20.0%
!! ACAATAATAGAAAAATTGTG+GGG - chr7_4:39369773-39369792 None:intergenic 20.0%
!! CACAATAATAGAAAAATTGT+GGG - chr7_4:39369774-39369793 None:intergenic 20.0%
!! TCTAATTAGAGACTATATAA+TGG + chr7_4:39369997-39370016 Msa1153130:intron 20.0%
!! TGTAAAACGTCATTAAATAT+CGG - chr7_4:39370062-39370081 None:intergenic 20.0%
!!! ATATTTAATGACGTTTTACA+TGG + chr7_4:39370062-39370081 Msa1153130:intron 20.0%
!!! TACGTTTAAGATACATATAT+TGG + chr7_4:39370503-39370522 Msa1153130:intron 20.0%
! ACAAAAACAATGACATATCA+AGG - chr7_4:39369123-39369142 None:intergenic 25.0%
!!! CATGGATTGTTTTGTTATTT+TGG + chr7_4:39369180-39369199 Msa1153130:five_prime_UTR 25.0%
!!! ATTTTGTTTGATACATAGAC+AGG - chr7_4:39369740-39369759 None:intergenic 25.0%
! GCACAATAATAGAAAAATTG+TGG - chr7_4:39369775-39369794 None:intergenic 25.0%
! TATTGAATAGGAATATTCTC+AGG - chr7_4:39369842-39369861 None:intergenic 25.0%
! GAGAATATTCCTATTCAATA+TGG + chr7_4:39369842-39369861 Msa1153130:CDS 25.0%
! AATATTCCTATTCAATATGG+TGG + chr7_4:39369845-39369864 Msa1153130:CDS 25.0%
! AAAGTGAACATACAAATAGA+AGG + chr7_4:39369941-39369960 Msa1153130:CDS 25.0%
! GACTATATAATGGTTACTTA+TGG + chr7_4:39370007-39370026 Msa1153130:intron 25.0%
! TAATGGTTACTTATGGTTTA+AGG + chr7_4:39370014-39370033 Msa1153130:intron 25.0%
!! CTTTGGTTTATAGATATCTT+AGG + chr7_4:39370106-39370125 Msa1153130:intron 25.0%
!!! CATGATTAGTCACAATTTTT+AGG + chr7_4:39370184-39370203 Msa1153130:intron 25.0%
!! GAAGCAATTTTCATTAACAT+TGG - chr7_4:39370570-39370589 None:intergenic 25.0%
!!! GTGTATTGTTGTTGTATTTT+CGG - chr7_4:39370876-39370895 None:intergenic 25.0%
!!! TTATGTTTGTTGTTTTTTGC+TGG + chr7_4:39370951-39370970 Msa1153130:three_prime_UTR 25.0%
! TTGTTAAAAATGGTACTTAG+TGG + chr7_4:39370996-39371015 Msa1153130:three_prime_UTR 25.0%
! AATTGAGTGATTATAGTCAT+TGG + chr7_4:39371175-39371194 Msa1153130:three_prime_UTR 25.0%
!!! ATGAAGGTTGGTTTTGAAAT+GGG - chr7_4:39368291-39368310 None:intergenic 30.0%
!!! AATGAAGGTTGGTTTTGAAA+TGG - chr7_4:39368292-39368311 None:intergenic 30.0%
ATGAAATTTCTGCATGGAAA+TGG - chr7_4:39368317-39368336 None:intergenic 30.0%
! TTTCTTGGAGTTTCTAGAAA+TGG - chr7_4:39368418-39368437 None:intergenic 30.0%
!!! GTTCTTTTGTTTGGTTTTGA+AGG - chr7_4:39368445-39368464 None:intergenic 30.0%
AACCATAGTCACAACATTAA+TGG + chr7_4:39368462-39368481 Msa1153130:five_prime_UTR 30.0%
TTCCATTAATGTTGTGACTA+TGG - chr7_4:39368467-39368486 None:intergenic 30.0%
! TTTGAGGTTGGAAATGAAAT+AGG - chr7_4:39368527-39368546 None:intergenic 30.0%
!!! TTTCAATGCTTTTTTCTCTG+AGG - chr7_4:39368551-39368570 None:intergenic 30.0%
!! AAAAGCATTGAAACAGTTGA+AGG + chr7_4:39368558-39368577 Msa1153130:five_prime_UTR 30.0%
AAATGTTGTGGATGAAGATT+TGG + chr7_4:39368765-39368784 Msa1153130:five_prime_UTR 30.0%
AATGTTGTGGATGAAGATTT+GGG + chr7_4:39368766-39368785 Msa1153130:five_prime_UTR 30.0%
TTATGGTGTGTTCAAAGATA+AGG + chr7_4:39368864-39368883 Msa1153130:five_prime_UTR 30.0%
AAGATAAGGAAATGTATGAG+AGG + chr7_4:39368878-39368897 Msa1153130:five_prime_UTR 30.0%
AGATAAGGAAATGTATGAGA+GGG + chr7_4:39368879-39368898 Msa1153130:five_prime_UTR 30.0%
! AGAAGTTGAAGAAGTTTTTG+AGG + chr7_4:39368917-39368936 Msa1153130:five_prime_UTR 30.0%
! AAGCTTTTACAGTTTAAACC+TGG + chr7_4:39368970-39368989 Msa1153130:five_prime_UTR 30.0%
! TTTTACAGTTTAAACCTGGT+GGG + chr7_4:39368974-39368993 Msa1153130:five_prime_UTR 30.0%
! GATTCAAGTTACTGATCTTA+AGG + chr7_4:39369008-39369027 Msa1153130:five_prime_UTR 30.0%
TCAAGATAACTATCCTGAAA+TGG + chr7_4:39369083-39369102 Msa1153130:five_prime_UTR 30.0%
! TTAGTTCTTTGAGTCAGAAA+TGG - chr7_4:39369527-39369546 None:intergenic 30.0%
! AAATTTGTGATCTCTAAGGA+AGG + chr7_4:39369551-39369570 Msa1153130:CDS 30.0%
! TTTGTGACTGTTTCCTTTTT+AGG + chr7_4:39369693-39369712 Msa1153130:intron 30.0%
AGCAAAAGTAAAGCCTAAAA+AGG - chr7_4:39369709-39369728 None:intergenic 30.0%
! CACTAATAAAGTGTTTGCTT+TGG + chr7_4:39370089-39370108 Msa1153130:intron 30.0%
ATGAAATGAAATTCGATAGC+TGG - chr7_4:39370148-39370167 None:intergenic 30.0%
TCTATATGCAGTTGAAAAAC+CGG + chr7_4:39370215-39370234 Msa1153130:intron 30.0%
!! GTTGATAACGTTCAAATTTG+CGG + chr7_4:39370246-39370265 Msa1153130:intron 30.0%
! TCACTATTTGTTGATTAGAG+TGG + chr7_4:39370616-39370635 Msa1153130:intron 30.0%
CTACACTATAGAAGTTGAAA+AGG + chr7_4:39370720-39370739 Msa1153130:CDS 30.0%
TAAGCCTCAAAATCAAATAG+TGG + chr7_4:39370911-39370930 Msa1153130:CDS 30.0%
GAGACAGAGAAAAGAAACAT+AGG - chr7_4:39368191-39368210 None:intergenic 35.0%
!!! TGAAGGTTGGTTTTGAAATG+GGG - chr7_4:39368290-39368309 None:intergenic 35.0%
TTCCATGCAGAAATTTCATC+TGG + chr7_4:39368318-39368337 Msa1153130:five_prime_UTR 35.0%
TCCATGCAGAAATTTCATCT+GGG + chr7_4:39368319-39368338 Msa1153130:five_prime_UTR 35.0%
AATTCCTCATTCACCATCAA+TGG + chr7_4:39368351-39368370 Msa1153130:five_prime_UTR 35.0%
! TTTCTAGAAATGGTGTGCTT+AGG - chr7_4:39368408-39368427 None:intergenic 35.0%
!!! GGTTTTGAAGGAGTTTTTCT+TGG - chr7_4:39368433-39368452 None:intergenic 35.0%
! GTGACTATGGTTCTTTTGTT+TGG - chr7_4:39368454-39368473 None:intergenic 35.0%
!!! CTTTTTTCTCTGAGGATTTG+AGG - chr7_4:39368543-39368562 None:intergenic 35.0%
AAGGAAAAGCTCTTAACTTC+TGG + chr7_4:39368577-39368596 Msa1153130:five_prime_UTR 35.0%
TCTGGTGAAATTACCAACAA+TGG + chr7_4:39368595-39368614 Msa1153130:five_prime_UTR 35.0%
TGCTTGTGAAGTGTATTTCT+TGG + chr7_4:39368722-39368741 Msa1153130:five_prime_UTR 35.0%
TTGTGAAGTGTATTTCTTGG+AGG + chr7_4:39368725-39368744 Msa1153130:five_prime_UTR 35.0%
ATTTCTTGGAGGAAAGAGTT+TGG + chr7_4:39368736-39368755 Msa1153130:five_prime_UTR 35.0%
!!! GTGTTGTTGCTTTTACTCAT+GGG + chr7_4:39368806-39368825 Msa1153130:five_prime_UTR 35.0%
CCATAATGATTGTAACACAC+AGG - chr7_4:39368850-39368869 None:intergenic 35.0%
CCTGTGTGTTACAATCATTA+TGG + chr7_4:39368847-39368866 Msa1153130:five_prime_UTR 35.0%
! GAAATGTATGAGAGGGTTTT+TGG + chr7_4:39368886-39368905 Msa1153130:five_prime_UTR 35.0%
!! AGTTGAAGAAGTTTTTGAGG+TGG + chr7_4:39368920-39368939 Msa1153130:five_prime_UTR 35.0%
! CTTTTACAGTTTAAACCTGG+TGG + chr7_4:39368973-39368992 Msa1153130:five_prime_UTR 35.0%
TTTACAGTTTAAACCTGGTG+GGG + chr7_4:39368975-39368994 Msa1153130:five_prime_UTR 35.0%
ATATGCCTAAGAGTGAGTTA+AGG + chr7_4:39369031-39369050 Msa1153130:five_prime_UTR 35.0%
TATGCCTAAGAGTGAGTTAA+GGG + chr7_4:39369032-39369051 Msa1153130:five_prime_UTR 35.0%
TCTCATATTATTAGCGGTGT+CGG + chr7_4:39369350-39369369 Msa1153130:intron 35.0%
! AGATTTTCATCAATGTGCCA+TGG + chr7_4:39369471-39369490 Msa1153130:CDS 35.0%
TACAACATGCTGAAATACCA+TGG - chr7_4:39369491-39369510 None:intergenic 35.0%
GAGCAAATTTGTGATCTCTA+AGG + chr7_4:39369547-39369566 Msa1153130:CDS 35.0%
!! AGGCTTTACTTTTGCTGAAT+TGG + chr7_4:39369713-39369732 Msa1153130:intron 35.0%
CTCAATCCACCATATTGAAT+AGG - chr7_4:39369854-39369873 None:intergenic 35.0%
CATACAAATAGAAGGAGTTG+AGG + chr7_4:39369949-39369968 Msa1153130:CDS 35.0%
TGATCTATGAAGCACAAACA+CGG + chr7_4:39370421-39370440 Msa1153130:intron 35.0%
ACGTCGGTCATTGAAAATAT+CGG + chr7_4:39370474-39370493 Msa1153130:intron 35.0%
CTATAGAAGTTGAAAAGGCA+AGG + chr7_4:39370725-39370744 Msa1153130:CDS 35.0%
TCATTCACAACAAAAGAAGC+AGG + chr7_4:39370781-39370800 Msa1153130:CDS 35.0%
AACAAAAGAAGCAGGCATAA+TGG + chr7_4:39370789-39370808 Msa1153130:CDS 35.0%
AGGCTTAATTGCATATCAGA+TGG - chr7_4:39370898-39370917 None:intergenic 35.0%
!! GTGACCACTATTTGATTTTG+AGG - chr7_4:39370918-39370937 None:intergenic 35.0%
GTGGTGTATTAGTACTTGTT+TGG + chr7_4:39371015-39371034 Msa1153130:three_prime_UTR 35.0%
!! ATTGTGATGAGTTTTGTCAG+AGG + chr7_4:39371111-39371130 Msa1153130:three_prime_UTR 35.0%
!! TTGTGATGAGTTTTGTCAGA+GGG + chr7_4:39371112-39371131 Msa1153130:three_prime_UTR 35.0%
TGGAAATGGAGAATGAAGGT+TGG - chr7_4:39368303-39368322 None:intergenic 40.0%
TGCATGGAAATGGAGAATGA+AGG - chr7_4:39368307-39368326 None:intergenic 40.0%
ACCCAGATGAAATTTCTGCA+TGG - chr7_4:39368323-39368342 None:intergenic 40.0%
!! TCTTCCATTGATGGTGAATG+AGG - chr7_4:39368358-39368377 None:intergenic 40.0%
GAGTGATCTTCTTCCATTGA+TGG - chr7_4:39368367-39368386 None:intergenic 40.0%
! TTTCTCTGAGGATTTGAGGT+TGG - chr7_4:39368539-39368558 None:intergenic 40.0%
TTACCAACAATGGTTCCATG+TGG + chr7_4:39368605-39368624 Msa1153130:five_prime_UTR 40.0%
TACCAACAATGGTTCCATGT+GGG + chr7_4:39368606-39368625 Msa1153130:five_prime_UTR 40.0%
! TGGGGTGTTAGTTTGATCAA+AGG + chr7_4:39368625-39368644 Msa1153130:five_prime_UTR 40.0%
!! GTTTGGTGCTGAAAATGTTG+TGG + chr7_4:39368753-39368772 Msa1153130:five_prime_UTR 40.0%
TTGGGATTCAAAGAGCTTGA+AGG + chr7_4:39368784-39368803 Msa1153130:five_prime_UTR 40.0%
!!! GGTGTTGTTGCTTTTACTCA+TGG + chr7_4:39368805-39368824 Msa1153130:five_prime_UTR 40.0%
TACTCATGGGTTTGATAGAG+AGG + chr7_4:39368819-39368838 Msa1153130:five_prime_UTR 40.0%
ACTCATGGGTTTGATAGAGA+GGG + chr7_4:39368820-39368839 Msa1153130:five_prime_UTR 40.0%
!!! TGAAGAAGTTTTTGAGGTGG+AGG + chr7_4:39368923-39368942 Msa1153130:five_prime_UTR 40.0%
!!! GAAGAAGTTTTTGAGGTGGA+GGG + chr7_4:39368924-39368943 Msa1153130:five_prime_UTR 40.0%
! AGGGTTCAAGTTCTTGAAAG+AGG + chr7_4:39368943-39368962 Msa1153130:five_prime_UTR 40.0%
! GGGTTCAAGTTCTTGAAAGA+GGG + chr7_4:39368944-39368963 Msa1153130:five_prime_UTR 40.0%
ACAACCCTTAACTCACTCTT+AGG - chr7_4:39369039-39369058 None:intergenic 40.0%
ATGTTACACCCTATGAAGCA+CGG + chr7_4:39369240-39369259 Msa1153130:five_prime_UTR 40.0%
! CGACCTAGTGATTTTCAGAA+TGG + chr7_4:39369875-39369894 Msa1153130:CDS 40.0%
! GGACCATTCTGAAAATCACT+AGG - chr7_4:39369881-39369900 None:intergenic 40.0%
!!! TGAACTCAGAAGCTGGTTTT+GGG - chr7_4:39369904-39369923 None:intergenic 40.0%
TTAACAGTGAACTCAGAAGC+TGG - chr7_4:39369911-39369930 None:intergenic 40.0%
GCTTCTGAGTTCACTGTTAA+AGG + chr7_4:39369911-39369930 Msa1153130:CDS 40.0%
TCTGAGTTCACTGTTAAAGG+AGG + chr7_4:39369914-39369933 Msa1153130:CDS 40.0%
GCAGTTGAAAAACCGGAAAT+CGG + chr7_4:39370222-39370241 Msa1153130:intron 40.0%
CAGTTGAAAAACCGGAAATC+GGG + chr7_4:39370223-39370242 Msa1153130:intron 40.0%
AGTTGAAAAACCGGAAATCG+GGG + chr7_4:39370224-39370243 Msa1153130:intron 40.0%
TGAAGCACAAACACGGTATA+TGG + chr7_4:39370428-39370447 Msa1153130:intron 40.0%
GAAGCACAAACACGGTATAT+GGG + chr7_4:39370429-39370448 Msa1153130:intron 40.0%
AAGCACAAACACGGTATATG+GGG + chr7_4:39370430-39370449 Msa1153130:intron 40.0%
GATACGATACGACAATACGT+CGG + chr7_4:39370458-39370477 Msa1153130:intron 40.0%
ATCAAGTGGGAGATTGTAGT+TGG + chr7_4:39370646-39370665 Msa1153130:CDS 40.0%
!! TGTGATGAGTTTTGTCAGAG+GGG + chr7_4:39371113-39371132 Msa1153130:three_prime_UTR 40.0%
TGGTGTGCTTAGGATTGACA+TGG - chr7_4:39368398-39368417 None:intergenic 45.0%
ACCAACAATGGTTCCATGTG+GGG + chr7_4:39368607-39368626 Msa1153130:five_prime_UTR 45.0%
GATCAAACTAACACCCCACA+TGG - chr7_4:39368623-39368642 None:intergenic 45.0%
ATCAAAGAATTCACCCCACC+AGG - chr7_4:39368991-39369010 None:intergenic 45.0%
! ATATGTGCAAGTGTCGTGTC+TGG - chr7_4:39369307-39369326 None:intergenic 45.0%
TGTCTGTATCCGTGCTTCAT+AGG + chr7_4:39369399-39369418 Msa1153130:five_prime_UTR 45.0%
!!! AACTCAGAAGCTGGTTTTGG+GGG - chr7_4:39369902-39369921 None:intergenic 45.0%
!!! GAACTCAGAAGCTGGTTTTG+GGG - chr7_4:39369903-39369922 None:intergenic 45.0%
!! GTGAACTCAGAAGCTGGTTT+TGG - chr7_4:39369905-39369924 None:intergenic 45.0%
ACGTTATCAACCCCGATTTC+CGG - chr7_4:39370237-39370256 None:intergenic 45.0%
AGAGTGGTGCAACAATCAAG+TGG + chr7_4:39370632-39370651 Msa1153130:intron 45.0%
GAGTGGTGCAACAATCAAGT+GGG + chr7_4:39370633-39370652 Msa1153130:intron 45.0%
AAGTGGGAGATTGTAGTTGG+AGG + chr7_4:39370649-39370668 Msa1153130:CDS 45.0%
! GTGTAGCTAGCTTCTGCATT+CGG - chr7_4:39370706-39370725 None:intergenic 45.0%
AGCAGGCATAATGGTACTCT+CGG + chr7_4:39370798-39370817 Msa1153130:CDS 45.0%
CGGTCGATAACTATGCTTCT+AGG + chr7_4:39370818-39370837 Msa1153130:CDS 45.0%
ACCCCACATGGAACCATTGT+TGG - chr7_4:39368611-39368630 None:intergenic 50.0%
TCCTGAAATGGTTGCTCGCA+AGG + chr7_4:39369095-39369114 Msa1153130:five_prime_UTR 50.0%
ACCTTGCGAGCAACCATTTC+AGG - chr7_4:39369099-39369118 None:intergenic 50.0%
!! AGGAGTGTCCGTGCTTCATA+GGG - chr7_4:39369251-39369270 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr7_4:39369251-39369270 Msa1153130:five_prime_UTR 50.0%
!! TCCTCGGATTAGCCATGTTC+TGG + chr7_4:39369267-39369286 Msa1153130:intron 50.0%
ACCAGAACATGGCTAATCCG+AGG - chr7_4:39369271-39369290 None:intergenic 50.0%
GGTGCAAGTCCTATGAAGCA+CGG - chr7_4:39369411-39369430 None:intergenic 50.0%
GGAGATTGTAGTTGGAGGCT+GGG + chr7_4:39370654-39370673 Msa1153130:CDS 50.0%
TGTAGTTGGAGGCTGGGATT+TGG + chr7_4:39370660-39370679 Msa1153130:CDS 50.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr7_4:39369252-39369271 None:intergenic 55.0%
TCGGACACGACACCAGAACA+TGG - chr7_4:39369282-39369301 None:intergenic 55.0%
! GCAAGTGTCGTGTCTGGTGT+CGG - chr7_4:39369301-39369320 None:intergenic 55.0%
GGCGTGTCAGTATCTGTGTC+CGG + chr7_4:39369371-39369390 Msa1153130:intron 55.0%
CACGGATACAGACACGACAC+CGG - chr7_4:39369393-39369412 None:intergenic 55.0%
GGGAGATTGTAGTTGGAGGC+TGG + chr7_4:39370653-39370672 Msa1153130:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 39368185 39371248 39368185 ID=Msa1153130;Name=Msa1153130
chr7_4 mRNA 39368185 39371248 39368185 ID=Msa1153130-mRNA-1;Parent=Msa1153130;Name=Msa1153130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1163|1|1|1|0.66|0.5|4|318|196
chr7_4 exon 39368185 39369282 39368185 ID=Msa1153130-mRNA-1:exon:9533;Parent=Msa1153130-mRNA-1
chr7_4 exon 39369381 39369597 39369381 ID=Msa1153130-mRNA-1:exon:9534;Parent=Msa1153130-mRNA-1
chr7_4 exon 39369829 39369970 39369829 ID=Msa1153130-mRNA-1:exon:9535;Parent=Msa1153130-mRNA-1
chr7_4 exon 39370634 39371248 39370634 ID=Msa1153130-mRNA-1:exon:9536;Parent=Msa1153130-mRNA-1
chr7_4 five_prime_UTR 39368185 39369282 39368185 ID=Msa1153130-mRNA-1:five_prime_utr;Parent=Msa1153130-mRNA-1
chr7_4 five_prime_UTR 39369381 39369445 39369381 ID=Msa1153130-mRNA-1:five_prime_utr;Parent=Msa1153130-mRNA-1
chr7_4 CDS 39369446 39369597 39369446 ID=Msa1153130-mRNA-1:cds;Parent=Msa1153130-mRNA-1
chr7_4 CDS 39369829 39369970 39369829 ID=Msa1153130-mRNA-1:cds;Parent=Msa1153130-mRNA-1
chr7_4 CDS 39370634 39370930 39370634 ID=Msa1153130-mRNA-1:cds;Parent=Msa1153130-mRNA-1
chr7_4 three_prime_UTR 39370931 39371248 39370931 ID=Msa1153130-mRNA-1:three_prime_utr;Parent=Msa1153130-mRNA-1
Gene Sequence

>Msa1153130

ATGAAATACACATTTTGTTGCTTTCAGATTTTCATCAATGTGCCATGGTATTTCAGCATGTTGTATTCAATGTTCAGTCCATTTCTGACTCAAAGAACTAAGAGCAAATTTGTGATCTCTAAGGAAGGAAATGCTGCAGAAACACTCTACAAATTTATAAGGCCTGAGAATATTCCTATTCAATATGGTGGATTGAGTCGACCTAGTGATTTTCAGAATGGTCCCCCAAAACCAGCTTCTGAGTTCACTGTTAAAGGAGGAGAAAAAGTGAACATACAAATAGAAGGAGTTGAGAGTGGTGCAACAATCAAGTGGGAGATTGTAGTTGGAGGCTGGGATTTGGAATACAGTGCTGAATTTGTTCCGAATGCAGAAGCTAGCTACACTATAGAAGTTGAAAAGGCAAGGAAAGTTGATGCATCAGAAGAAGCAATTCAGAATTCATTCACAACAAAAGAAGCAGGCATAATGGTACTCTCGGTCGATAACTATGCTTCTAGGAAGAAAAAAGTCGCTGCTTATCGCTATTTTGTCCGAAAATACAACAACAATACACCATCTGATATGCAATTAAGCCTCAAAATCAAATAG
Protein sequence

>Msa1153130

MKYTFCCFQIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPENIPIQYGGLSRPSDFQNGPPKPASEFTVKGGEKVNIQIEGVESGATIKWEIVVGGWDLEYSAEFVPNAEASYTIEVEKARKVDASEEAIQNSFTTKEAGIMVLSVDNYASRKKKVAAYRYFVRKYNNNTPSDMQLSLKIK*