AlfalfaGEDB | Msa1154170

M. sativa cultivar zhongmu-4 / Msa1154170

KEGG: -
GO: GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154170	XP_013449266.1	98.103	896	17	0	1	896	4	899	0.0	1823

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154170	sp\|Q9SCZ4\|FERON_ARATH	73.986	888	211	9	18	896	19	895	0.0	1298

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1154170	A0A072U270	98.103	896	17	0	1	896	4	899	0.0	1823

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138810	Msa1154170	0.822139	2.778512e-53	-8.615850e-47
Msa0373030	Msa1154170	0.806743	7.093881e-50	-8.615850e-47
Msa0893470	Msa1154170	0.810608	1.059249e-50	-8.615850e-47
Msa1026770	Msa1154170	0.812901	3.356850e-51	-8.615850e-47
Msa1026800	Msa1154170	0.814235	1.708159e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1154170	MtrunA17_Chr7g0245131	98.208	893	16	0	4	896	1	893	1816
Msa1154170	MtrunA17_Chr1g0190581	50.891	898	391	17	13	896	7	868	841
Msa1154170	MtrunA17_Chr7g0274261	49.119	908	404	21	4	896	8	872	813
Msa1154170	MtrunA17_Chr6g0455321	46.774	930	409	25	13	896	11	900	734
Msa1154170	MtrunA17_Chr5g0420151	47.017	838	383	19	10	824	11	810	697
Msa1154170	MtrunA17_Chr5g0420171	45.933	836	373	18	10	824	11	788	676
Msa1154170	MtrunA17_Chr2g0318301	47.868	821	360	20	85	896	82	843	676
Msa1154170	MtrunA17_Chr7g0219721	45.395	912	407	32	25	896	28	888	649
Msa1154170	MtrunA17_Chr7g0219671	44.566	911	421	32	24	896	25	889	648
Msa1154170	MtrunA17_Chr7g0219691	47.108	830	368	26	25	822	28	818	647

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1154170	AT3G51550.1	73.986	888	211	9	18	896	19	895	1298
Msa1154170	AT3G04690.1	50.776	902	367	26	13	896	8	850	843
Msa1154170	AT5G28680.1	50.725	897	383	21	13	896	8	858	837
Msa1154170	AT5G28680.2	50.725	897	383	21	13	896	8	858	837
Msa1154170	AT5G39000.1	47.921	914	400	23	13	896	6	873	773
Msa1154170	AT5G38990.1	47.237	923	408	26	9	896	2	880	744
Msa1154170	AT5G54380.1	44.284	901	430	23	13	896	10	855	649
Msa1154170	AT3G46290.1	42.455	888	429	22	19	896	15	830	633
Msa1154170	AT1G30570.1	42.403	849	408	21	6	825	10	806	622
Msa1154170	AT4G39110.1	44.074	810	395	19	29	825	52	816	617

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Find 261 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACGCGCCGTCATAAA+CGG	0.399479	7_4:-41522504	None:intergenic
AAAATTCTGCTGAATTGTGG+CGG	0.726940	7_4:+41522354	Msa1154170:CDS
AAAGATTCTAGTACAAGTGA+AGG	0.535424	7_4:+41523692	Msa1154170:CDS
AAAGCCTATGCATTTGTAAA+TGG	0.166137	7_4:+41522789	Msa1154170:CDS
AAAGTGAAGTCTCACAAGAT+AGG	0.462377	7_4:-41523195	None:intergenic
AAATCCGATGTGTACTCATT+TGG	0.450793	7_4:+41524412	Msa1154170:CDS
AAATGACGACAAAGGTTTGA+TGG	0.441193	7_4:-41523809	None:intergenic
AAATTTGGAACCATTATCAG+TGG	0.628289	7_4:-41522415	None:intergenic
AACACTAAGAACACAAACAG+TGG	0.637246	7_4:-41522288	None:intergenic
AACACTGAAATTCCTAAGCA+CGG	0.613022	7_4:-41522658	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAAATTCTGCTGAATTG+TGG	+	chr7_4:41522351-41522370	Msa1154170:CDS	30.0%
AAAGCCTATGCATTTGTAAA+TGG	+	chr7_4:41522789-41522808	Msa1154170:CDS	30.0%
AAGCCTATGCATTTGTAAAT+GGG	+	chr7_4:41522790-41522809	Msa1154170:CDS	30.0%
AATCCCATTTACAAATGCAT+AGG	-	chr7_4:41522796-41522815	None:intergenic	30.0%
GAATGTTTATAGGTTAAACG+TGG	+	chr7_4:41522917-41522936	Msa1154170:CDS	30.0%
AAAAATGTAACGCACATCAT+CGG	-	chr7_4:41522994-41523013	None:intergenic	30.0%
ACAACATAATCTTTATGCAC+CGG	-	chr7_4:41523356-41523375	None:intergenic	30.0%
CAAGATTGCATCATAGTAAT+TGG	-	chr7_4:41523447-41523466	None:intergenic	30.0%
TACTATGATGCAATCTTGAA+TGG	+	chr7_4:41523449-41523468	Msa1154170:CDS	30.0%
AAAGATTCTAGTACAAGTGA+AGG	+	chr7_4:41523692-41523711	Msa1154170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	41522255	41524945	41522255	ID=Msa1154170;Name=Msa1154170
chr7_4	mRNA	41522255	41524945	41522255	ID=Msa1154170-mRNA-1;Parent=Msa1154170;Name=Msa1154170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|896
chr7_4	exon	41522255	41524945	41522255	ID=Msa1154170-mRNA-1:exon:10037;Parent=Msa1154170-mRNA-1
chr7_4	CDS	41522255	41524945	41522255	ID=Msa1154170-mRNA-1:cds;Parent=Msa1154170-mRNA-1

Gene Sequence

>Msa1154170

ATGAGGAACATGAACAAATACTCTGTTTGTGTTCCACTGTTTGTGTTCTTAGTGTTAGCTATTGAGCTTGTTATAGCAGCAGATTTTAAGCCAACTGATAAAATTCTGCTGAATTGTGGCGGTCCTGCTGTTAGTACTGATCCTGATGGCCGTGAATGGACCACTGATAATGGTTCCAAATTTGGTTCATCAGCTGTAAAATCCACCACATCACAGGCTGCAACTCAAGATCCTGCAGTTCCACAGATTCCGTTTATGACGGCGCGTGTTTTTCAATCGCCGTATACCTATAGTTTTCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGTTGTACTTTTATTCGGCTTCTTATGGTGGGCTTAATGCATCTGATGCACGGTTTGGTGTGACAGCGCAATCATACACCGTGCTTAGGAATTTCAGTGTTTCTGAGACTGCTTTGGGTTTGAATTATGATTACATTGTGAAGGAATATTGCATTCATGTTGATGAAGGAACCTTGAATGTGACTTTTACTCCATCTGCCAATGCATCTAAAGCCTATGCATTTGTAAATGGGATTGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACCACCATGATTGTTGGTACGGGTACTCCCTTCACCATTGACAACAGCACTGCACTTGAGAATGTTTATAGGTTAAACGTGGGTGGGAATGATATTTCGCCTTCCAAAGATACTGGCATGTTTAGGTCATGGACCGATGATGTGCGTTACATTTTTGGGGCTGCATTTGGAGTTACCGAGACTGCTGATCCAGAAGTGAAGCTTGAGTATCCTCCGGGAACACCATCTTATATTGCTCCGTCCGATGTTTACATGACGGCCAGATCGATGGGTCCGAATGGCAATATCAGCTTGAATTGGAACTTGACTTGGATTTTCTCAATTGATTCTGGGTTTTCCTATCTTGTGAGACTTCACTTTTGTGAGGGCACGACAACTATAACCAAGATCAATCAAAGAGTGTTCGATATATTCCTCGGTAATCAAACTGCTGAGGATGGGGCGGATGTTATTGCCTGGGCAGGTAGTTTTGACCTTCCACATTCAAATGGGGTTCCGGTGCATAAAGATTATGTTGTATTTGCTCCCACTGGGCCACCGCAGCAGGACCTGTGGCTTGCGCTGCATCCAGATGCAACTTCTAAGCCCAATTACTATGATGCAATCTTGAATGGAGTAGAAATATTCAAAATCAGTGATAGTAAAGGTAATCTGGCAGGGACCAACCCTCCTCCTCCCCAGGTGCAAGACTTAATTGATCCGTCATTGGCTAGGAAATCTAGTAAATCCAAGAGTCATACAGGAATCATTGCTGGAGGTATTGGTGGAGGAGTTGCTTTACTACTTTTGATTGGGCTATTTGCTTTTGGCACATCTCGTCGCCGTAGGAATGGAAAAGATTCTAGTACAAGTGAAGGGCCGTCTGGCTGGCTTCCACTTTCTCTTTACGGTAATTCACACTCTGCAGCTTCTGCCAAGACGAACACAACTGGAAGTTACACTTCCACTCTTCCATCAAACCTTTGTCGTCATTTCTCATTTGCTGAAATCAAGGCTGCTACAAACAACTTTGACGAATCTTTGATTCTTGGTGTGGGAGGATTTGGCAAGGTTTACAAAGGAGAAATTGATGGTGGGTCAACCAAAGTTGCAATTAAACGTGGGAATCCACTCTCTGAGCAGGGTGTGCACGAATTCCAAACTGAAATTGAAATGCTCTCCAAACTTCGTCACCGGCACCTTGTTTCATTGATCGGATACTGTGAAGAGAACACCGAAATGATCCTTGTCTATGATCATATGGCATATGGAACACTCAGGGAGCATCTATACAAGACTCAGAAACCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGAGGTCTACACTATCTTCACACCGGTGCTAAATATACCATCATCCACCGTGATGTGAAGACTACAAACATTTTACTAGATGAGAAGTGGGTGGCCAAGGTATCTGATTTTGGATTGTCTAAAACAGGTCCTACATTGGATAATACTCATGTAAGTACCGTGGTAAAGGGTAGTTTTGGTTACTTGGATCCAGAATACTTTAGGAGGCAACAACTGACCGACAAATCCGATGTGTACTCATTTGGTGTGGTTCTATTCGAGGTACTTTGCGCTCGCCCGGCTTTGAACCCAACACTTGCTAAGGAGCAAGTGAGTCTAGCTGAGTGGGCAGCTCATTGCTACAAGAAAGGTATTCTTGACCATATCACTGATCCTTATCTGAAGGGCAAGATTGCTCCGGAATGTTTTAAGAAGTTCGCCGAGACCGCGATGAAGTGTGTAAATGACCAAGGCATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTCGCTTTGCAGCTGCAAGAAAGTGCGGAGGAGAGTGGCAACGGTTTCGGAGGAATATGCGGTGAAGATGAGCCGTTGTTTGCAGATTCTAAAGGAAAGAAGGGTGTGGATGTGTTACCGGGTTATGATGGTAATGTGACCGACTCCAAAAGCAGTGGCATGTCGATGAGCATTGGAGGTAGAAGCTTGGCTAGCGAAGACTCTGATGGGTTAACTCCTAGTGCTGTGTTTTCACAGATCATGAATCCAAAAGGACGTTAA

Protein sequence

>Msa1154170

MRNMNKYSVCVPLFVFLVLAIELVIAADFKPTDKILLNCGGPAVSTDPDGREWTTDNGSKFGSSAVKSTTSQAATQDPAVPQIPFMTARVFQSPYTYSFPVASGWKFLRLYFYSASYGGLNASDARFGVTAQSYTVLRNFSVSETALGLNYDYIVKEYCIHVDEGTLNVTFTPSANASKAYAFVNGIEVVSMPDIYTSTDGTTMIVGTGTPFTIDNSTALENVYRLNVGGNDISPSKDTGMFRSWTDDVRYIFGAAFGVTETADPEVKLEYPPGTPSYIAPSDVYMTARSMGPNGNISLNWNLTWIFSIDSGFSYLVRLHFCEGTTTITKINQRVFDIFLGNQTAEDGADVIAWAGSFDLPHSNGVPVHKDYVVFAPTGPPQQDLWLALHPDATSKPNYYDAILNGVEIFKISDSKGNLAGTNPPPPQVQDLIDPSLARKSSKSKSHTGIIAGGIGGGVALLLLIGLFAFGTSRRRRNGKDSSTSEGPSGWLPLSLYGNSHSAASAKTNTTGSYTSTLPSNLCRHFSFAEIKAATNNFDESLILGVGGFGKVYKGEIDGGSTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLAKEQVSLAEWAAHCYKKGILDHITDPYLKGKIAPECFKKFAETAMKCVNDQGIERPSMGDVLWNLEFALQLQESAEESGNGFGGICGEDEPLFADSKGKKGVDVLPGYDGNVTDSKSSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR*