AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0893470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893470 MtrunA17_Chr4g0067981 98.532 681 8 2 1 680 1 680 0.0 1373
Msa0893470 MtrunA17_Chr2g0294911 62.445 679 170 13 6 680 4 601 0.0 766
Msa0893470 MtrunA17_Chr1g0161431 57.012 328 131 5 24 345 4 327 2.05e-117 365
Msa0893470 MtrunA17_Chr3g0137101 59.542 262 98 2 26 280 3 263 3.60e-101 323
Msa0893470 MtrunA17_Chr3g0123131 60.784 255 98 1 31 283 13 267 1.28e-97 311
Msa0893470 MtrunA17_Chr8g0376881 59.216 255 104 0 29 283 23 277 4.63e-95 303
Msa0893470 MtrunA17_Chr1g0149841 57.414 263 98 3 28 282 2 258 1.71e-94 301
Msa0893470 MtrunA17_Chr2g0304841 45.767 378 173 9 29 387 16 380 6.01e-89 292
Msa0893470 MtrunA17_Chr7g0275891 50.000 294 116 6 28 300 2 285 1.45e-83 267
Msa0893470 MtrunA17_Chr4g0074411 47.522 343 150 9 31 356 18 347 4.99e-83 274
Msa0893470 MtrunA17_Chr1g0149851 53.091 275 98 4 28 278 2 269 8.26e-82 269
Msa0893470 MtrunA17_Chr4g0074401 45.251 358 158 10 29 364 15 356 1.36e-80 267
Msa0893470 MtrunA17_Chr7g0275401 48.097 289 137 4 28 308 2 285 1.26e-78 252
Msa0893470 MtrunA17_Chr3g0134461 49.583 240 70 2 26 264 3 192 9.15e-61 201
Msa0893470 MtrunA17_Chr1g0149831 53.659 205 70 4 90 282 1 192 8.06e-59 197
Msa0893470 MtrunA17_Chr4g0074421 56.477 193 73 4 81 269 2 187 2.51e-58 195
Msa0893470 MtrunA17_Chr4g0009851 42.324 241 113 4 31 271 11 225 2.72e-56 194
Msa0893470 MtrunA17_Chr4g0009901 42.562 242 113 2 31 272 10 225 9.00e-56 191
Msa0893470 MtrunA17_Chr3g0134481 61.069 131 51 0 28 158 5 135 1.11e-48 169
Msa0893470 MtrunA17_Chr3g0134481 62.264 53 20 0 214 266 131 183 3.30e-16 77.4
Msa0893470 MtrunA17_Chr4g0009981 41.327 196 90 1 76 271 2 172 8.54e-45 160
Msa0893470 MtrunA17_Chr6g0471041 38.934 244 119 6 30 271 13 228 8.56e-45 165
Msa0893470 MtrunA17_Chr8g0391911 37.109 256 137 8 31 274 9 252 1.80e-36 137
Msa0893470 MtrunA17_Chr8g0350761 31.481 270 162 6 33 281 19 286 4.97e-31 127
Msa0893470 MtrunA17_Chr6g0473731 36.313 179 89 2 111 283 10 169 2.54e-29 121
Msa0893470 MtrunA17_Chr8g0383961 43.750 128 72 0 30 157 13 140 2.08e-28 114
Msa0893470 MtrunA17_Chr4g0011071 32.919 161 83 1 81 241 39 174 1.14e-25 104
Msa0893470 MtrunA17_Chr4g0031961 54.082 98 37 2 188 277 96 193 3.17e-24 103
Msa0893470 MtrunA17_Chr3g0127941 34.239 184 113 4 35 212 56 237 2.54e-23 105
Msa0893470 MtrunA17_Chr7g0255711 63.768 69 25 0 208 276 84 152 3.79e-23 100
Msa0893470 MtrunA17_Chr6g0456631 36.220 127 78 2 29 153 7 132 9.51e-23 95.9
Msa0893470 MtrunA17_Chr4g0009991 40.141 142 59 2 123 264 1 116 2.09e-22 93.2
Msa0893470 MtrunA17_Chr7g0276361 38.686 137 73 3 25 153 2 135 2.33e-21 98.6
Msa0893470 MtrunA17_Chr7g0223971 33.333 195 83 4 113 274 1 181 2.55e-21 98.2
Msa0893470 MtrunA17_Chr4g0030271 38.211 123 71 2 35 153 89 210 3.21e-21 99.0
Msa0893470 MtrunA17_Chr1g0181811 38.525 122 72 1 35 153 85 206 8.69e-21 97.4
Msa0893470 MtrunA17_Chr8g0345901 39.344 122 67 3 37 153 38 157 2.09e-19 92.8
Msa0893470 MtrunA17_Chr3g0091641 34.677 124 78 1 35 155 24 147 4.74e-19 91.3
Msa0893470 MtrunA17_Chr5g0400241 57.971 69 29 0 205 273 301 369 7.81e-19 90.5
Msa0893470 MtrunA17_Chr5g0400241 36.364 132 80 2 26 156 9 137 1.24e-14 77.4
Msa0893470 MtrunA17_Chr4g0061021 35.036 137 83 3 23 155 22 156 1.13e-18 90.1
Msa0893470 MtrunA17_Chr4g0054981 50.000 78 37 1 214 291 309 384 1.14e-17 87.0
Msa0893470 MtrunA17_Chr4g0054981 36.220 127 77 2 31 156 14 137 1.24e-13 73.9
Msa0893470 MtrunA17_Chr5g0423031 45.679 81 43 1 31 111 10 89 2.27e-17 80.5
Msa0893470 MtrunA17_Chr4g0010001 44.444 81 44 1 31 111 10 89 3.18e-17 77.4
Msa0893470 MtrunA17_Chr4g0040481 58.333 60 25 0 214 273 157 216 3.64e-16 81.3
Msa0893470 MtrunA17_Chr2g0324891 45.977 87 45 1 214 300 160 244 6.87e-16 80.5
Msa0893470 MtrunA17_Chr1g0198601 50.000 82 40 1 203 283 199 280 7.07e-16 80.1
Msa0893470 MtrunA17_Chr6g0469321 67.308 52 17 0 231 282 70 121 1.81e-14 72.0
Msa0893470 MtrunA17_Chr5g0417521 57.627 59 24 1 211 268 11 69 1.98e-14 75.5
Msa0893470 MtrunA17_Chr5g0422621 40.541 111 53 4 202 300 186 295 3.52e-14 74.7
Msa0893470 MtrunA17_Chr7g0274471 46.739 92 40 2 215 305 218 301 3.69e-14 75.5
Msa0893470 MtrunA17_Chr6g0461641 55.932 59 25 1 211 268 38 96 1.06e-13 73.6
Msa0893470 MtrunA17_Chr2g0321461 55.932 59 25 1 211 268 41 99 2.11e-13 72.4
Msa0893470 MtrunA17_Chr4g0042451 54.237 59 26 1 211 268 13 71 5.00e-13 70.9
Msa0893470 MtrunA17_Chr2g0310011 57.627 59 24 1 211 268 31 89 1.26e-12 69.7
Msa0893470 MtrunA17_Chr4g0045361 53.731 67 30 1 212 277 271 337 1.35e-12 70.1
Msa0893470 MtrunA17_Chr8g0356501 50.649 77 37 1 193 268 15 91 1.44e-12 69.7
Msa0893470 MtrunA17_Chr7g0261911 44.792 96 44 3 211 305 258 345 1.64e-12 70.5
Msa0893470 MtrunA17_Chr5g0402631 55.738 61 26 1 214 273 213 273 1.96e-12 69.3
Msa0893470 MtrunA17_Chr4g0062921 52.941 68 31 1 212 278 232 299 2.13e-12 69.7
Msa0893470 MtrunA17_Chr1g0190301 41.237 97 48 2 210 305 170 258 2.26e-12 69.3
Msa0893470 MtrunA17_Chr1g0197171 60.000 55 21 1 215 268 44 98 3.60e-12 67.8
Msa0893470 MtrunA17_Chr7g0254981 56.364 55 23 1 215 268 50 104 1.39e-11 65.9
Msa0893470 MtrunA17_Chr5g0409731 56.364 55 23 1 215 268 25 79 1.42e-11 65.9
Msa0893470 MtrunA17_Chr2g0290991 58.182 55 22 1 215 268 39 93 3.93e-11 64.7
Msa0893470 MtrunA17_Chr2g0291021 58.182 55 22 1 215 268 49 103 7.53e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0893470 AT3G16857.2 53.868 698 238 28 29 680 31 690 0.0 617
Msa0893470 AT3G16857.1 53.481 675 232 26 29 658 31 668 0.0 592
Msa0893470 AT3G16857.3 51.750 657 233 28 70 680 2 620 0.0 534
Msa0893470 AT2G25180.1 47.255 419 179 12 20 414 2 402 3.63e-99 317
Msa0893470 AT2G01760.1 52.492 301 123 3 29 320 5 294 1.67e-93 295
Msa0893470 AT4G31920.1 55.556 279 96 4 29 301 11 267 2.19e-89 290
Msa0893470 AT1G67710.1 63.052 249 81 5 32 273 8 252 3.75e-89 288
Msa0893470 AT2G01760.2 48.024 329 123 4 29 320 5 322 1.24e-87 280
Msa0893470 AT5G58080.1 51.034 290 135 4 29 317 12 295 5.47e-82 272
Msa0893470 AT2G01760.3 49.583 240 101 3 90 320 1 229 5.62e-61 207
Msa0893470 AT1G67710.2 60.209 191 65 5 90 273 1 187 5.94e-58 203
Msa0893470 AT5G49240.1 41.825 263 132 4 28 279 35 287 1.56e-55 191
Msa0893470 AT1G49190.1 35.048 311 161 9 11 302 15 303 3.45e-47 172
Msa0893470 AT3G62670.1 36.859 312 164 10 36 337 42 330 6.41e-46 169
Msa0893470 AT1G67710.3 55.556 171 65 5 110 273 12 178 1.92e-42 160
Msa0893470 AT5G07210.2 34.701 268 145 6 35 274 16 281 2.36e-39 154
Msa0893470 AT5G07210.1 33.696 276 145 7 35 274 16 289 9.26e-37 146
Msa0893470 AT2G27070.1 33.333 270 147 7 35 273 16 283 5.54e-34 137
Msa0893470 AT1G49190.2 42.361 144 78 1 11 154 15 153 6.31e-30 125
Msa0893470 AT3G46640.2 60.759 79 28 1 202 277 128 206 4.11e-24 104
Msa0893470 AT3G46640.1 60.759 79 28 1 202 277 128 206 4.11e-24 104
Msa0893470 AT3G46640.3 60.759 79 28 1 202 277 128 206 6.76e-24 103
Msa0893470 AT5G59570.2 59.036 83 31 2 202 281 125 207 1.80e-23 101
Msa0893470 AT5G59570.1 59.036 83 31 2 202 281 125 207 1.80e-23 101
Msa0893470 AT2G46790.1 39.837 123 69 2 35 153 37 158 2.90e-23 103
Msa0893470 AT2G46790.3 39.837 123 69 2 35 153 37 158 3.15e-23 103
Msa0893470 AT2G40970.1 66.667 66 22 0 208 273 98 163 7.23e-23 99.0
Msa0893470 AT5G05090.1 62.667 75 26 1 201 273 65 139 8.44e-23 99.0
Msa0893470 AT3G10760.1 69.355 62 19 0 212 273 102 163 3.62e-22 99.0
Msa0893470 AT1G68210.1 26.937 271 165 5 35 274 13 281 1.75e-21 100
Msa0893470 AT5G60100.7 39.024 123 70 2 35 153 64 185 3.02e-21 97.4
Msa0893470 AT5G60100.6 39.024 123 70 2 35 153 64 185 3.02e-21 97.4
Msa0893470 AT5G60100.4 39.024 123 70 2 35 153 64 185 3.02e-21 97.4
Msa0893470 AT5G60100.5 39.024 123 70 2 35 153 64 185 4.03e-21 97.8
Msa0893470 AT5G60100.3 39.024 123 70 2 35 153 64 185 4.03e-21 97.8
Msa0893470 AT5G60100.1 39.024 123 70 2 35 153 64 185 4.03e-21 97.8
Msa0893470 AT5G60100.2 39.024 123 70 2 35 153 64 185 7.53e-21 97.1
Msa0893470 AT5G02810.1 39.344 122 71 1 35 153 78 199 1.66e-20 97.1
Msa0893470 AT5G24470.1 37.600 125 73 2 34 154 49 172 2.07e-20 95.9
Msa0893470 AT5G61380.1 35.556 135 82 2 26 155 8 142 1.81e-19 93.2
Msa0893470 AT5G44190.2 62.121 66 25 0 208 273 140 205 2.32e-19 90.9
Msa0893470 AT5G44190.1 62.121 66 25 0 208 273 140 205 2.39e-19 91.3
Msa0893470 AT2G20570.1 42.727 110 62 1 165 273 102 211 3.96e-17 84.7
Msa0893470 AT2G20570.2 48.936 94 46 1 182 273 134 227 2.64e-16 82.4
Msa0893470 AT4G18020.8 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.8 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.11 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.11 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.4 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.4 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.5 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.5 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.10 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.10 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.7 34.074 135 81 2 155 289 243 369 6.74e-15 78.2
Msa0893470 AT4G18020.7 36.765 136 77 3 29 157 12 145 3.99e-14 75.9
Msa0893470 AT4G18020.3 34.074 135 81 2 155 289 243 369 8.04e-15 78.2
Msa0893470 AT4G18020.3 36.765 136 77 3 29 157 12 145 5.36e-14 75.5
Msa0893470 AT4G18020.2 34.074 135 81 2 155 289 243 369 8.04e-15 78.2
Msa0893470 AT4G18020.2 36.765 136 77 3 29 157 12 145 5.36e-14 75.5
Msa0893470 AT4G18020.1 34.074 135 81 2 155 289 243 369 8.04e-15 78.2
Msa0893470 AT4G18020.1 36.765 136 77 3 29 157 12 145 5.36e-14 75.5
Msa0893470 AT4G18020.6 34.074 135 81 2 155 289 243 369 8.04e-15 78.2
Msa0893470 AT4G18020.6 36.765 136 77 3 29 157 12 145 5.36e-14 75.5
Msa0893470 AT4G18020.9 34.074 135 81 2 155 289 243 369 8.04e-15 78.2
Msa0893470 AT4G18020.9 36.765 136 77 3 29 157 12 145 5.36e-14 75.5
Msa0893470 AT3G04030.1 52.000 75 31 3 211 284 41 111 5.71e-14 74.7
Msa0893470 AT3G04030.3 52.000 75 31 3 211 284 41 111 6.10e-14 74.7
Msa0893470 AT5G29000.1 34.682 173 84 6 154 305 110 274 6.24e-14 74.3
Msa0893470 AT5G29000.3 34.682 173 84 6 154 305 110 274 6.24e-14 74.3
Msa0893470 AT5G29000.2 34.682 173 84 6 154 305 153 317 6.47e-14 74.7
Msa0893470 AT5G18240.2 57.627 59 24 1 211 268 41 99 2.45e-13 72.8
Msa0893470 AT5G18240.3 57.627 59 24 1 211 268 41 99 2.45e-13 72.8
Msa0893470 AT5G18240.5 57.627 59 24 1 211 268 41 99 2.65e-13 72.8
Msa0893470 AT5G18240.1 57.627 59 24 1 211 268 41 99 2.65e-13 72.8
Msa0893470 AT5G18240.4 57.627 59 24 1 211 268 41 99 2.65e-13 72.8
Msa0893470 AT5G29000.4 37.594 133 63 4 154 267 153 284 5.17e-13 70.9
Msa0893470 AT3G04030.2 48.649 74 34 2 211 284 41 110 9.12e-13 71.2
Msa0893470 AT1G79430.2 57.627 59 24 1 211 268 30 88 1.70e-12 70.1
Msa0893470 AT3G04450.4 42.424 99 47 3 210 305 193 284 1.99e-12 70.1
Msa0893470 AT3G04450.2 42.424 99 47 3 210 305 193 284 1.99e-12 70.1
Msa0893470 AT3G04450.1 42.424 99 47 3 210 305 233 324 2.04e-12 70.5
Msa0893470 AT1G69580.1 52.542 59 27 1 211 268 30 88 3.09e-12 68.9
Msa0893470 AT1G69580.2 52.542 59 27 1 211 268 30 88 3.14e-12 68.9
Msa0893470 AT1G25550.1 48.611 72 36 1 202 272 196 267 4.20e-12 68.6
Msa0893470 AT3G24120.2 58.182 55 22 1 215 268 41 95 4.51e-12 67.8
Msa0893470 AT3G24120.1 58.182 55 22 1 215 268 41 95 4.57e-12 67.8
Msa0893470 AT3G12730.1 52.174 69 26 2 207 268 9 77 4.90e-12 66.6
Msa0893470 AT5G45580.1 56.364 55 23 1 215 268 7 61 5.53e-12 67.0
Msa0893470 AT5G45580.2 56.364 55 23 1 215 268 23 77 6.98e-12 67.0
Msa0893470 AT2G03500.1 54.839 62 27 1 214 274 232 293 6.99e-12 68.6
Msa0893470 AT4G13640.2 58.182 55 22 1 215 268 37 91 1.08e-11 66.6
Msa0893470 AT4G13640.1 58.182 55 22 1 215 268 37 91 1.09e-11 66.6
Msa0893470 AT3G04450.3 54.237 59 26 1 210 267 233 291 1.31e-11 66.6
Msa0893470 AT2G01060.1 55.738 61 26 1 209 268 9 69 2.54e-11 65.5
Msa0893470 AT1G68670.1 46.914 81 40 2 200 277 198 278 4.31e-11 65.5

Find 204 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATATTCTTCAAACTTC+TGG 0.147805 6_1:-77946800 Msa0893470:three_prime_UTR
TGGAATTTCTGACGGTCTTA+TGG 0.190497 6_1:-77947733 Msa0893470:CDS
TCATCCTGCCCGAAATTATC+AGG 0.256695 6_1:+77947153 None:intergenic
TGAAGGTTCCGATCAGTTTC+CGG 0.268090 6_1:-77950355 Msa0893470:CDS
AACCTCTTCCCTGATAATTT+CGG 0.273856 6_1:-77947162 Msa0893470:CDS
TATCAGGGAAGAGGTTAGTA+TGG 0.283763 6_1:+77947169 None:intergenic
ACCTCTTCCCTGATAATTTC+GGG 0.288070 6_1:-77947161 Msa0893470:CDS
TCAGTACTTAACCTCTTTGT+AGG 0.293342 6_1:-77946248 Msa0893470:three_prime_UTR
TTTAAACTCTTAGAACATAT+TGG 0.300849 6_1:-77949636 Msa0893470:CDS
TTCTTTCTGATTGCAGTTAC+CGG 0.308965 6_1:-77946918 Msa0893470:three_prime_UTR
TTGTGCCATCTGCATCAATA+AGG 0.312582 6_1:+77947845 None:intergenic
CCAAAGTACTTACTAATAAC+TGG 0.319130 6_1:+77949597 None:intergenic
CATTTCAGTGCTTTGATTCA+TGG 0.319626 6_1:+77947632 None:intergenic
AGTGATCATGAGCATACTTT+AGG 0.319751 6_1:-77946277 Msa0893470:three_prime_UTR
TCAGCATCATCAGATGCTTT+TGG 0.321169 6_1:+77949300 None:intergenic
ATTTCAAGCCGAAGTTAATT+CGG 0.322921 6_1:-77947547 Msa0893470:CDS
CTTCTGCTAATGAAGGAAAT+TGG 0.323941 6_1:-77949269 Msa0893470:CDS
GGAAAATCTCCTTTCTCTCT+TGG 0.333648 6_1:-77947303 Msa0893470:CDS
TTCCGGATGTTTATGTTCTT+CGG 0.335747 6_1:-77946411 Msa0893470:three_prime_UTR
CTTCTCCAAATCTCAACCTT+GGG 0.339068 6_1:+77948033 None:intergenic
TGAAGAGGTATGCTTGGGTT+AGG 0.342605 6_1:-77946620 Msa0893470:three_prime_UTR
TGCAAATTGGCGAGTTGCTT+TGG 0.342865 6_1:+77947936 None:intergenic
CTGGAATTGATGAATGTTCC+TGG 0.347527 6_1:-77948464 Msa0893470:CDS
GGAATTTCTGACGGTCTTAT+GGG 0.349221 6_1:-77947732 Msa0893470:CDS
GAACAAGGTAATCTCCAAAA+TGG 0.349947 6_1:-77947270 Msa0893470:CDS
CTAGACTTTGCGCTGGGAGC+TGG 0.350433 6_1:+77948150 None:intergenic
GAAAACCCAAGGTTGAGATT+TGG 0.350909 6_1:-77948038 Msa0893470:CDS
AGCAGAGATGCTTCTTTGCT+TGG 0.351628 6_1:-77947324 Msa0893470:CDS
AAATGTTGCCAGCCACTTGC+AGG 0.358647 6_1:-77948429 Msa0893470:intron
GAAGTTAATTCGGGAATTAA+AGG 0.362242 6_1:-77947537 Msa0893470:CDS
AGAACATATTGGATTGGAAA+TGG 0.369734 6_1:-77949625 Msa0893470:CDS
TAAAGAAGCCTCGGGTTGTT+TGG 0.371579 6_1:-77949182 Msa0893470:CDS
CCAGCAGAAATCCCGGGATT+GGG 0.372360 6_1:-77947472 Msa0893470:CDS
CAAATATTCTTCAAACTTCT+GGG 0.373124 6_1:-77946799 Msa0893470:three_prime_UTR
CTTTGTACATGAACATGGTT+TGG 0.376891 6_1:-77946351 Msa0893470:three_prime_UTR
TGAAAATTCAACAAGGGTTA+AGG 0.379057 6_1:-77947217 Msa0893470:CDS
CTGGGAGTAGTGTACTATAA+TGG 0.381832 6_1:-77946781 Msa0893470:three_prime_UTR
CCAAGATTACCGAACCTCTT+GGG 0.383663 6_1:-77947774 Msa0893470:CDS
AATGTTGACTGCCACCATTT+TGG 0.384208 6_1:+77947256 None:intergenic
CATGAGTGCACTTCTGAAAC+AGG 0.384874 6_1:-77947127 Msa0893470:intron
TTTCAAGCCGAAGTTAATTC+GGG 0.385444 6_1:-77947546 Msa0893470:CDS
TGCTGCAGACTGGTGCAAAT+TGG 0.390973 6_1:+77947923 None:intergenic
AACGAAGAGCTCTGTGGAAC+AGG 0.393856 6_1:+77947666 None:intergenic
TTTCTCTCTTGGAGAAGGCT+TGG 0.399650 6_1:-77947292 Msa0893470:CDS
CAGCAGCCACAAACTGTTGA+TGG 0.399900 6_1:+77949148 None:intergenic
TCTGTTAGTAATTTCCCTCT+TGG 0.407707 6_1:-77947609 Msa0893470:CDS
CGAGCTCCATCAACAGTTTG+TGG 0.408027 6_1:-77949154 Msa0893470:CDS
CCTTCTCCAAATCTCAACCT+TGG 0.410833 6_1:+77948032 None:intergenic
CCCAAGAGGTTCGGTAATCT+TGG 0.413044 6_1:+77947774 None:intergenic
TTCGGCTTGAAATGAGCCTT+TGG 0.414980 6_1:+77947557 None:intergenic
GTGATCATGAGCATACTTTA+GGG 0.418715 6_1:-77946276 Msa0893470:three_prime_UTR
TTCAAAGCCTCAATACGAAC+AGG 0.419602 6_1:+77949411 None:intergenic
TAGGAATCTAGACTAATAGA+AGG 0.419625 6_1:-77946229 Msa0893470:three_prime_UTR
GGCTGAGAAATGAATTATTC+TGG 0.423210 6_1:+77948243 None:intergenic
CCCAATCCCGGGATTTCTGC+TGG 0.423497 6_1:+77947472 None:intergenic
TTCCCTCTTGGAAGCACTCC+AGG 0.424109 6_1:-77947597 Msa0893470:CDS
AGCCCACAAGAGGCATCATT+TGG 0.424795 6_1:-77948224 Msa0893470:CDS
TGCTTTGGCTCCATGTTAGT+AGG 0.429194 6_1:+77947951 None:intergenic
ACCAGCAGAAATCCCGGGAT+TGG 0.435479 6_1:-77947473 Msa0893470:CDS
AGTCCCCGCTTCTGCTACAC+AGG 0.436130 6_1:-77947874 Msa0893470:CDS
TTGAGGCTTTGAAGAACATA+TGG 0.437862 6_1:-77949401 Msa0893470:CDS
GTTCTTGAAGAGGTATGCTT+GGG 0.439729 6_1:-77946625 Msa0893470:three_prime_UTR
CAAGGGACTGTGCTGCAGAC+TGG 0.442581 6_1:+77947913 None:intergenic
GAAGAGGTATGCTTGGGTTA+GGG 0.445920 6_1:-77946619 Msa0893470:three_prime_UTR
ACTCTTCAAGCAGCAGGACT+TGG 0.447810 6_1:-77948125 Msa0893470:CDS
ACTCTTAGAACATATTGGAT+TGG 0.448527 6_1:-77949631 Msa0893470:CDS
GATTAAACCTGTTCGTATTG+AGG 0.449126 6_1:-77949418 Msa0893470:CDS
ATTTCAGTGCTTTGATTCAT+GGG 0.452203 6_1:+77947633 None:intergenic
TTAGTATGGGAGCTCGCGTC+AGG 0.455250 6_1:+77947183 None:intergenic
CTTTGATCCATGAGAGGCAT+TGG 0.455626 6_1:+77948077 None:intergenic
TGTACTATAATGGTTTAGTC+TGG 0.456530 6_1:-77946771 Msa0893470:three_prime_UTR
TGACTTTGACGGGTATTCTC+TGG 0.456582 6_1:-77946974 Msa0893470:CDS
AGAATGAGTTTGACTTTGAC+GGG 0.456863 6_1:-77946984 Msa0893470:CDS
ATCACTGTCTTCATCTCATA+AGG 0.457292 6_1:+77946294 None:intergenic
TCCAAGATTACCGAACCTCT+TGG 0.457743 6_1:-77947775 Msa0893470:CDS
TGTTCTTGAAGAGGTATGCT+TGG 0.458201 6_1:-77946626 Msa0893470:three_prime_UTR
CTTCAAACTCTTGCAGCAGC+TGG 0.460273 6_1:-77948173 Msa0893470:CDS
GAAGAACATAAAATTAAAAG+AGG 0.460919 6_1:+77946502 None:intergenic
TCGGGAATTAAAGGATCAGC+TGG 0.463527 6_1:-77947528 Msa0893470:CDS
AGGCTTACCAATGCCTCTCA+TGG 0.463932 6_1:-77948084 Msa0893470:CDS
TATTCGTCTTCTGCTAATGA+AGG 0.466948 6_1:-77949276 Msa0893470:CDS
AACTGAACCAGCAGAAATCC+CGG 0.470254 6_1:-77947479 Msa0893470:CDS
TAGCATTGGACCTCTAGGTT+GGG 0.471457 6_1:+77947821 None:intergenic
GGTAGGTCAACTGTGAAATC+AGG 0.471735 6_1:-77948104 Msa0893470:CDS
AAACTGATCGGAACCTTCAC+CGG 0.472593 6_1:+77950359 None:intergenic
TTCAAAGAGAACGCAAGAAT+CGG 0.475865 6_1:+77950550 None:intergenic
AATCTAAGCAACAACGGAAA+AGG 0.481027 6_1:-77950423 Msa0893470:CDS
TCACTTAGCATTGGACCTCT+AGG 0.481945 6_1:+77947816 None:intergenic
TGCCAAATGATGCCTCTTGT+GGG 0.486957 6_1:+77948222 None:intergenic
TTTCCCTGTGTAGCAGAAGC+GGG 0.487937 6_1:+77947870 None:intergenic
AAACCAACAAATCTTCTTCA+CGG 0.488919 6_1:-77947978 Msa0893470:CDS
ACTCCGTGAAGAAGATTTGT+TGG 0.489018 6_1:+77947975 None:intergenic
CAGCAGAAATCCCGGGATTG+GGG 0.489487 6_1:-77947471 Msa0893470:CDS
TCTCCTTTCTCTCTTGGAGA+AGG 0.491761 6_1:-77947297 Msa0893470:CDS
AGTTTAAATCCATCCATGTC+TGG 0.492706 6_1:+77949651 None:intergenic
TTTAATTCCCGAATTAACTT+CGG 0.493406 6_1:+77947539 None:intergenic
GGGCAGTCTACTGTGTCAAA+TGG 0.502999 6_1:-77947753 Msa0893470:CDS
AAGCCTTCTCCAAGAGAGAA+AGG 0.504157 6_1:+77947294 None:intergenic
TGTGCCATCTGCATCAATAA+GGG 0.506429 6_1:+77947846 None:intergenic
TGGAAAGATACGGAGCAGTC+GGG 0.506488 6_1:-77949348 Msa0893470:CDS
GACCGAAGAACATAAACATC+CGG 0.506870 6_1:+77946409 None:intergenic
CTACTCAGAGAGAACAAGAA+TGG 0.509140 6_1:-77949705 Msa0893470:CDS
TTCTTGCAGCAGGAAGGCAT+TGG 0.511048 6_1:-77947012 Msa0893470:intron
CCAATGCTAAGTGAAAATAC+TGG 0.512986 6_1:-77947807 Msa0893470:CDS
GTATGATACCTGCAAGTGGC+TGG 0.513699 6_1:+77948421 None:intergenic
ACATATGGCAGCATGTGGTT+CGG 0.513719 6_1:-77949386 Msa0893470:CDS
TTGCGCACATGTCTTTATGA+AGG 0.513753 6_1:-77950270 Msa0893470:intron
GTAGACTGCCCCAAGAGGTT+CGG 0.516395 6_1:+77947765 None:intergenic
AGAAGGGATGATGAAGAGGA+AGG 0.517568 6_1:-77949231 Msa0893470:CDS
ACATCGATGTTGCCATGTAA+AGG 0.519974 6_1:+77947402 None:intergenic
AGAAGCATCTCTGCTATGTC+CGG 0.523262 6_1:+77947332 None:intergenic
AGGAATCATATGTTAGACCT+TGG 0.524315 6_1:+77947439 None:intergenic
GAGAATGAGTTTGACTTTGA+CGG 0.527613 6_1:-77946985 Msa0893470:CDS
AAAGAGAAGGGATGATGAAG+AGG 0.527771 6_1:-77949235 Msa0893470:CDS
GTGCCAAATGATGCCTCTTG+TGG 0.529194 6_1:+77948221 None:intergenic
CTTCCCTGATAATTTCGGGC+AGG 0.529625 6_1:-77947157 Msa0893470:CDS
CGTCAACACTAAAGAAGCCT+CGG 0.531313 6_1:-77949191 Msa0893470:CDS
TGGTAAAAGTGTTGTTATGA+AGG 0.536755 6_1:-77949469 Msa0893470:CDS
TGGAATTGATGAATGTTCCT+GGG 0.540747 6_1:-77948463 Msa0893470:CDS
CTAGCCACTCTTCAAGCAGC+AGG 0.540998 6_1:-77948131 Msa0893470:CDS
TCAACAGTTTGTGGCTGCTG+TGG 0.541281 6_1:-77949145 Msa0893470:CDS
CAGTCTGCAGCACAGTCCCT+TGG 0.541662 6_1:-77947912 Msa0893470:CDS
TTAGCATTGGACCTCTAGGT+TGG 0.542224 6_1:+77947820 None:intergenic
TTGTGTTTCTTGCAGCAGGA+AGG 0.544167 6_1:-77947018 Msa0893470:intron
CAAGGTTGAGATTTGGAGAA+GGG 0.545110 6_1:-77948031 Msa0893470:CDS
CAAGATTACCGAACCTCTTG+GGG 0.546140 6_1:-77947773 Msa0893470:CDS
GGCACGATTTCGTCAATGAA+CGG 0.547334 6_1:-77948203 Msa0893470:CDS
CTCGCATATTCATGTTGCCA+AGG 0.547462 6_1:+77947895 None:intergenic
TAGTCTAGATTCCTACAAAG+AGG 0.550180 6_1:+77946237 None:intergenic
ACTGCTACTACTATGAAATC+CGG 0.552368 6_1:-77950378 Msa0893470:CDS
GTGGAAAGATACGGAGCAGT+CGG 0.552841 6_1:-77949349 Msa0893470:CDS
TTCATTTCTCAGCCCACAAG+AGG 0.554489 6_1:-77948234 Msa0893470:CDS
GAGCAGAAGAAAAGCCCTGA+TGG 0.559461 6_1:+77947361 None:intergenic
GCCCGAAATTATCAGGGAAG+AGG 0.559846 6_1:+77947160 None:intergenic
CAATGCCTCTCATGGATCAA+AGG 0.561353 6_1:-77948076 Msa0893470:CDS
CTTGGAGAAGGCTTGGAACA+AGG 0.563016 6_1:-77947285 Msa0893470:CDS
TCGCATGCAAATCCTTTACA+TGG 0.566200 6_1:-77947414 Msa0893470:CDS
CAGCTGCTGCAAGAGTTTGA+AGG 0.567437 6_1:+77948174 None:intergenic
GGAGAAACTCGAGAAAGAGA+AGG 0.568448 6_1:-77949248 Msa0893470:CDS
AGGGCAGAATTGCAGAAGCA+AGG 0.569014 6_1:-77946600 Msa0893470:three_prime_UTR
AAAGAACGAGTGGAAAGATA+CGG 0.569117 6_1:-77949358 Msa0893470:CDS
CTCAAGAATCATAAGACACG+TGG 0.569208 6_1:+77950299 None:intergenic
GAATTCTTTGTACATGAACA+TGG 0.574074 6_1:-77946356 Msa0893470:three_prime_UTR
TAACTGCAATCAGAAAGAAC+TGG 0.577103 6_1:+77946922 None:intergenic
AAATCCCTTATTGATGCAGA+TGG 0.581980 6_1:-77947850 Msa0893470:CDS
TCACGGAGTTCCTACTAACA+TGG 0.585473 6_1:-77947961 Msa0893470:CDS
AATATCGATTGTATCTTCGA+AGG 0.588508 6_1:-77948286 Msa0893470:CDS
GTGGCTGCTGTGGATCAACT+AGG 0.590323 6_1:-77949135 Msa0893470:CDS
GAGAAACTCGAGAAAGAGAA+GGG 0.591527 6_1:-77949247 Msa0893470:CDS
TAAACCCGCCGGAAACTGAT+CGG 0.593099 6_1:+77950347 None:intergenic
GTAGTGATGTCTGCCGATGA+TGG 0.594746 6_1:-77949489 Msa0893470:intron
ATTTCCCTGTGTAGCAGAAG+CGG 0.596362 6_1:+77947869 None:intergenic
ATCAGGGAAGAGGTTAGTAT+GGG 0.598648 6_1:+77947170 None:intergenic
GGTTCCGATCAGTTTCCGGC+GGG 0.599863 6_1:-77950351 Msa0893470:CDS
ACTACTATGAAATCCGGTGA+AGG 0.600055 6_1:-77950372 Msa0893470:CDS
CCAAGGTTGAGATTTGGAGA+AGG 0.603069 6_1:-77948032 Msa0893470:CDS
AGAGTGGCTAGACTTTGCGC+TGG 0.604456 6_1:+77948143 None:intergenic
GTGCATATGCCAGACATGGA+TGG 0.605390 6_1:-77949660 Msa0893470:CDS
TTATGTTGAAAATTCAACAA+GGG 0.606022 6_1:-77947223 Msa0893470:CDS
GAATTTCTGACGGTCTTATG+GGG 0.610921 6_1:-77947731 Msa0893470:CDS
GAGTGGCTAGACTTTGCGCT+GGG 0.613125 6_1:+77948144 None:intergenic
CAACATCGATGTCTCTCCGT+CGG 0.614346 6_1:-77947391 Msa0893470:CDS
ATATCTAGTATCACAACCAA+AGG 0.615031 6_1:-77947573 Msa0893470:CDS
AGTACTTACTAATAACTGGA+AGG 0.615916 6_1:+77949601 None:intergenic
GGTAAAAGTGTTGTTATGAA+GGG 0.618959 6_1:-77949468 Msa0893470:CDS
GTCAACACTAAAGAAGCCTC+GGG 0.618987 6_1:-77949190 Msa0893470:CDS
AAGTCCTGCTGCTTGAAGAG+TGG 0.619281 6_1:+77948127 None:intergenic
GCAGTCGGGTAGTGCTGACG+AGG 0.619983 6_1:-77949334 Msa0893470:CDS
AACAGTATGATACCTGCAAG+TGG 0.620491 6_1:+77948417 None:intergenic
GTGTCAAATGGAATTTCTGA+CGG 0.620630 6_1:-77947741 Msa0893470:CDS
AGCAGAAATCCCGGGATTGG+GGG 0.622120 6_1:-77947470 Msa0893470:CDS
TTGTATCTTCGAAGGCTGAG+TGG 0.625218 6_1:-77948278 Msa0893470:CDS
GAAGAACATATGGCAGCATG+TGG 0.630309 6_1:-77949391 Msa0893470:CDS
CATCCTGCCCGAAATTATCA+GGG 0.630656 6_1:+77947154 None:intergenic
AGGTTCCTTTGATCCATGAG+AGG 0.631553 6_1:+77948071 None:intergenic
CCCTGATGGACTAAAACCGA+CGG 0.643382 6_1:+77947375 None:intergenic
ATAAATCTGCAAACTCGCGT+AGG 0.643837 6_1:-77946572 Msa0893470:three_prime_UTR
CAAGGTAATCTCCAAAATGG+TGG 0.644703 6_1:-77947267 Msa0893470:CDS
TCGCATATTCATGTTGCCAA+GGG 0.645505 6_1:+77947896 None:intergenic
ACTGAACCAGCAGAAATCCC+GGG 0.645616 6_1:-77947478 Msa0893470:CDS
GTTGTCGAATAATTTAGACT+CGG 0.649630 6_1:+77946838 None:intergenic
AGGTTCCGATCAGTTTCCGG+CGG 0.652193 6_1:-77950352 Msa0893470:CDS
TACCTGGAGTGCTTCCAAGA+GGG 0.655640 6_1:+77947595 None:intergenic
GTTGTGATACTAGATATACC+TGG 0.656765 6_1:+77947579 None:intergenic
TTCCCTGTGTAGCAGAAGCG+GGG 0.660017 6_1:+77947871 None:intergenic
TTCAAGCAGCAGGACTTGGT+AGG 0.662359 6_1:-77948121 Msa0893470:CDS
ACACAGTAGACTGCCCCAAG+AGG 0.664618 6_1:+77947760 None:intergenic
TTTATGTTGAAAATTCAACA+AGG 0.669918 6_1:-77947224 Msa0893470:CDS
TAAAGGATTTGCATGCGATG+AGG 0.672320 6_1:+77947419 None:intergenic
TGATGTGCATATGCCAGACA+TGG 0.676897 6_1:-77949664 Msa0893470:CDS
ACGAGAACTCGTAAACCCGC+CGG 0.676939 6_1:+77950336 None:intergenic
TCTTATGGGGAGAAATAACA+TGG 0.679947 6_1:-77947718 Msa0893470:CDS
CAGTCGGGTAGTGCTGACGA+GGG 0.681841 6_1:-77949333 Msa0893470:CDS
ATACCTGGAGTGCTTCCAAG+AGG 0.686422 6_1:+77947594 None:intergenic
GTGACAGCAACTATTTACAC+CGG 0.687900 6_1:+77946899 None:intergenic
TCGACAGACCAAACAACCCG+AGG 0.690366 6_1:+77949174 None:intergenic
TCAAGAATCATAAGACACGT+GGG 0.691685 6_1:+77950300 None:intergenic
GGGTTTACGAGTTCTCGTTG+TGG 0.701370 6_1:-77950331 Msa0893470:CDS
ATGATGAATCTAAGCAACAA+CGG 0.705147 6_1:-77950429 Msa0893470:CDS
GTCCCCGCTTCTGCTACACA+GGG 0.706393 6_1:-77947873 Msa0893470:CDS
ATGGCACAATCCCAACCTAG+AGG 0.710994 6_1:-77947831 Msa0893470:CDS
TTGACCGCATAAAATGCACA+AGG 0.724437 6_1:-77946711 Msa0893470:three_prime_UTR
TGTGGAACAGGATTAAACGA+AGG 0.733577 6_1:+77947678 None:intergenic
GTTATGAAGGGTGTAACACA+TGG 0.742807 6_1:-77949456 Msa0893470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGGTTTTAAAGAAAATT+TGG + chr6_1:77947968-77947987 None:intergenic 15.0%
!!! TATAATTCTTTTAAAAACAC+TGG + chr6_1:77948226-77948245 None:intergenic 15.0%
!!! AAAAAATGATTTGTTTGTAA+TGG + chr6_1:77949800-77949819 None:intergenic 15.0%
!!! CATGTGTAAATATTTTTATT+TGG - chr6_1:77950372-77950391 Msa0893470:CDS 15.0%
!!! TTATTTGTGATTTTATGTTA+TGG - chr6_1:77950511-77950530 Msa0893470:five_prime_UTR 15.0%
!!! TCATGTTTTGTTTATTGTTT+TGG - chr6_1:77946369-77946388 Msa0893470:three_prime_UTR 20.0%
!!! TTTTTGAATAGTTTGCATAT+GGG + chr6_1:77946721-77946740 None:intergenic 20.0%
!!! TTTTTTGAATAGTTTGCATA+TGG + chr6_1:77946722-77946741 None:intergenic 20.0%
!! TCAAAATGAAAATCAAAATC+TGG + chr6_1:77946927-77946946 None:intergenic 20.0%
!!! TTTAAAATACCATTGAAACA+TGG - chr6_1:77946956-77946975 Msa0893470:exon 20.0%
!! TTTAAACTCTTAGAACATAT+TGG - chr6_1:77947200-77947219 Msa0893470:CDS 20.0%
!!! ACTATTGATTCATTTCTTAT+TGG - chr6_1:77948055-77948074 Msa0893470:CDS 20.0%
!! ATCTATTATAGAACTAATAG+AGG + chr6_1:77948083-77948102 None:intergenic 20.0%
!!! ATCAATTCCAGAATTTTTTT+GGG + chr6_1:77948363-77948382 None:intergenic 20.0%
!!! AGGGATATAAAATTTAACTT+GGG + chr6_1:77948466-77948485 None:intergenic 20.0%
!! TAGGGATATAAAATTTAACT+TGG + chr6_1:77948467-77948486 None:intergenic 20.0%
!! TCGTTAAAAATATCATAACT+TGG + chr6_1:77949338-77949357 None:intergenic 20.0%
!! TTTATGTTGAAAATTCAACA+AGG - chr6_1:77949612-77949631 Msa0893470:CDS 20.0%
!! TTATGTTGAAAATTCAACAA+GGG - chr6_1:77949613-77949632 Msa0893470:CDS 20.0%
!! GAAGAACATAAAATTAAAAG+AGG + chr6_1:77950337-77950356 None:intergenic 20.0%
! GAATAATTAAGATTCAGTTG+TGG - chr6_1:77947893-77947912 Msa0893470:CDS 25.0%
! AATCAATAGTAGAACTTCTA+GGG + chr6_1:77948045-77948064 None:intergenic 25.0%
! CATACAAGAAAAATGTATGA+CGG + chr6_1:77948163-77948182 None:intergenic 25.0%
!!! ATTCTTTTAAAAACACTGGA+TGG + chr6_1:77948222-77948241 None:intergenic 25.0%
! AGGTACTCAAACAAATATTA+GGG + chr6_1:77948269-77948288 None:intergenic 25.0%
!! AAGGTACTCAAACAAATATT+AGG + chr6_1:77948270-77948289 None:intergenic 25.0%
! AGAAATATCAAACTTGAATC+AGG + chr6_1:77948326-77948345 None:intergenic 25.0%
!!! CATCAATTCCAGAATTTTTT+TGG + chr6_1:77948364-77948383 None:intergenic 25.0%
! TTTAATTCCCGAATTAACTT+CGG + chr6_1:77949300-77949319 None:intergenic 25.0%
!! GTTGAATTTTCAACATAAAG+AGG + chr6_1:77949611-77949630 None:intergenic 25.0%
! CTCATAATTCATTCTTTCTA+TGG - chr6_1:77949740-77949759 Msa0893470:CDS 25.0%
! TCAAATATTCTTCAAACTTC+TGG - chr6_1:77950036-77950055 Msa0893470:intron 25.0%
! CAAATATTCTTCAAACTTCT+GGG - chr6_1:77950037-77950056 Msa0893470:intron 25.0%
!! TCTAGCAATGTTCTAATTTT+AGG - chr6_1:77950186-77950205 Msa0893470:intron 25.0%
!! CTAGCAATGTTCTAATTTTA+GGG - chr6_1:77950187-77950206 Msa0893470:intron 25.0%
ATGATGAATCTAAGCAACAA+CGG - chr6_1:77946407-77946426 Msa0893470:three_prime_UTR 30.0%
CGCTTAATTACTTGATTAGT+TGG - chr6_1:77946658-77946677 Msa0893470:three_prime_UTR 30.0%
!!! GACCTTTTTTTCTTCTTCTT+TGG - chr6_1:77946830-77946849 Msa0893470:three_prime_UTR 30.0%
AGCCAAAGAAGAAGAAAAAA+AGG + chr6_1:77946835-77946854 None:intergenic 30.0%
!!! TTTTTTTCTTCTTCTTTGGC+TGG - chr6_1:77946834-77946853 Msa0893470:three_prime_UTR 30.0%
ACTCTTAGAACATATTGGAT+TGG - chr6_1:77947205-77947224 Msa0893470:CDS 30.0%
! AGAACATATTGGATTGGAAA+TGG - chr6_1:77947211-77947230 Msa0893470:CDS 30.0%
AGTACTTACTAATAACTGGA+AGG + chr6_1:77947238-77947257 None:intergenic 30.0%
! CCAAAGTACTTACTAATAAC+TGG + chr6_1:77947242-77947261 None:intergenic 30.0%
CCAGTTATTAGTAAGTACTT+TGG - chr6_1:77947239-77947258 Msa0893470:CDS 30.0%
! AACAACACTTTTACCATCAT+CGG + chr6_1:77947363-77947382 None:intergenic 30.0%
!! TGGTAAAAGTGTTGTTATGA+AGG - chr6_1:77947367-77947386 Msa0893470:CDS 30.0%
!! GGTAAAAGTGTTGTTATGAA+GGG - chr6_1:77947368-77947387 Msa0893470:CDS 30.0%
!! AAAAACTTTTGAAGAGTCCT+GGG + chr6_1:77947748-77947767 None:intergenic 30.0%
!! AAAAAACTTTTGAAGAGTCC+TGG + chr6_1:77947749-77947768 None:intergenic 30.0%
ATAGAGAACTAAGAAACTGT+AGG + chr6_1:77948019-77948038 None:intergenic 30.0%
GAATCAATAGTAGAACTTCT+AGG + chr6_1:77948046-77948065 None:intergenic 30.0%
TAATAGATTGAACTGCTTCA+AGG - chr6_1:77948095-77948114 Msa0893470:CDS 30.0%
AATAGATTGAACTGCTTCAA+GGG - chr6_1:77948096-77948115 Msa0893470:CDS 30.0%
! TATATCCCTATGTTTTCTTG+TGG - chr6_1:77948477-77948496 Msa0893470:CDS 30.0%
! AATATCGATTGTATCTTCGA+AGG - chr6_1:77948550-77948569 Msa0893470:intron 30.0%
! TTGGGTTTTCAAAACTGAAA+AGG + chr6_1:77948788-77948807 None:intergenic 30.0%
!!! TTTTCAGTTTTGAAAACCCA+AGG - chr6_1:77948787-77948806 Msa0893470:intron 30.0%
AAACCAACAAATCTTCTTCA+CGG - chr6_1:77948858-77948877 Msa0893470:intron 30.0%
ATTTCAGTGCTTTGATTCAT+GGG + chr6_1:77949206-77949225 None:intergenic 30.0%
ATATCTAGTATCACAACCAA+AGG - chr6_1:77949263-77949282 Msa0893470:CDS 30.0%
ATTTCAAGCCGAAGTTAATT+CGG - chr6_1:77949289-77949308 Msa0893470:CDS 30.0%
GAAGTTAATTCGGGAATTAA+AGG - chr6_1:77949299-77949318 Msa0893470:CDS 30.0%
TGAAAATTCAACAAGGGTTA+AGG - chr6_1:77949619-77949638 Msa0893470:CDS 30.0%
GTTGTCGAATAATTTAGACT+CGG + chr6_1:77950001-77950020 None:intergenic 30.0%
TGTACTATAATGGTTTAGTC+TGG - chr6_1:77950065-77950084 Msa0893470:intron 30.0%
! TTGTTCTGACTATTCTTTTC+CGG - chr6_1:77950408-77950427 Msa0893470:CDS 30.0%
GAATTCTTTGTACATGAACA+TGG - chr6_1:77950480-77950499 Msa0893470:five_prime_UTR 30.0%
TTCAAAGAGAACGCAAGAAT+CGG + chr6_1:77946289-77946308 None:intergenic 35.0%
AATCTAAGCAACAACGGAAA+AGG - chr6_1:77946413-77946432 Msa0893470:three_prime_UTR 35.0%
ACTGCTACTACTATGAAATC+CGG - chr6_1:77946458-77946477 Msa0893470:three_prime_UTR 35.0%
TCAAGAATCATAAGACACGT+GGG + chr6_1:77946539-77946558 None:intergenic 35.0%
AGCTCAAAACCATGTTTCAA+TGG + chr6_1:77946968-77946987 None:intergenic 35.0%
AGTTTAAATCCATCCATGTC+TGG + chr6_1:77947188-77947207 None:intergenic 35.0%
GATTAAACCTGTTCGTATTG+AGG - chr6_1:77947418-77947437 Msa0893470:CDS 35.0%
!! TTGAGGCTTTGAAGAACATA+TGG - chr6_1:77947435-77947454 Msa0893470:CDS 35.0%
AAAGAACGAGTGGAAAGATA+CGG - chr6_1:77947478-77947497 Msa0893470:CDS 35.0%
TATTCGTCTTCTGCTAATGA+AGG - chr6_1:77947560-77947579 Msa0893470:CDS 35.0%
CTTCTGCTAATGAAGGAAAT+TGG - chr6_1:77947567-77947586 Msa0893470:CDS 35.0%
! GTCTTTTAGATAGATCTGCA+CGG + chr6_1:77947794-77947813 None:intergenic 35.0%
GCAATCAAGTTTCATCCTAT+TGG - chr6_1:77947929-77947948 Msa0893470:CDS 35.0%
TCAAGTTTCATCCTATTGGT+TGG - chr6_1:77947933-77947952 Msa0893470:CDS 35.0%
GAGAAAGACAATACGCTAAA+TGG + chr6_1:77947985-77948004 None:intergenic 35.0%
GACGGAAAATGAATACATTC+AGG + chr6_1:77948145-77948164 None:intergenic 35.0%
AAACCTTAGCAATCTCATCT+TGG - chr6_1:77948192-77948211 Msa0893470:CDS 35.0%
!! ACCTTAGCTATGAAGTATTG+TGG - chr6_1:77948285-77948304 Msa0893470:CDS 35.0%
ACCACAATACTTCATAGCTA+AGG + chr6_1:77948289-77948308 None:intergenic 35.0%
TGGAATTGATGAATGTTCCT+GGG - chr6_1:77948373-77948392 Msa0893470:intron 35.0%
GATGACCACAAGAAAACATA+GGG + chr6_1:77948485-77948504 None:intergenic 35.0%
AGATGACCACAAGAAAACAT+AGG + chr6_1:77948486-77948505 None:intergenic 35.0%
! GTTTTCTTGTGGTCATCTAA+CGG - chr6_1:77948488-77948507 Msa0893470:intron 35.0%
GGCTGAGAAATGAATTATTC+TGG + chr6_1:77948596-77948615 None:intergenic 35.0%
AAATCCCTTATTGATGCAGA+TGG - chr6_1:77948986-77949005 Msa0893470:intron 35.0%
! CCAGTATTTTCACTTAGCAT+TGG + chr6_1:77949032-77949051 None:intergenic 35.0%
CCAATGCTAAGTGAAAATAC+TGG - chr6_1:77949029-77949048 Msa0893470:intron 35.0%
GTGTCAAATGGAATTTCTGA+CGG - chr6_1:77949095-77949114 Msa0893470:intron 35.0%
TCTTATGGGGAGAAATAACA+TGG - chr6_1:77949118-77949137 Msa0893470:intron 35.0%
CATTTCAGTGCTTTGATTCA+TGG + chr6_1:77949207-77949226 None:intergenic 35.0%
TCTGTTAGTAATTTCCCTCT+TGG - chr6_1:77949227-77949246 Msa0893470:CDS 35.0%
GTTGTGATACTAGATATACC+TGG + chr6_1:77949260-77949279 None:intergenic 35.0%
TTTCAAGCCGAAGTTAATTC+GGG - chr6_1:77949290-77949309 Msa0893470:CDS 35.0%
AGGAATCATATGTTAGACCT+TGG + chr6_1:77949400-77949419 None:intergenic 35.0%
! TTTTCTTCTGCTCAACAAAC+CGG - chr6_1:77949485-77949504 Msa0893470:CDS 35.0%
GAACAAGGTAATCTCCAAAA+TGG - chr6_1:77949566-77949585 Msa0893470:intron 35.0%
AACCTCTTCCCTGATAATTT+CGG - chr6_1:77949674-77949693 Msa0893470:CDS 35.0%
!!! TTTTTTGTGTTTCTTGCAGC+AGG - chr6_1:77949814-77949833 Msa0893470:intron 35.0%
! GAGAATGAGTTTGACTTTGA+CGG - chr6_1:77949851-77949870 Msa0893470:intron 35.0%
! AGAATGAGTTTGACTTTGAC+GGG - chr6_1:77949852-77949871 Msa0893470:intron 35.0%
TAACTGCAATCAGAAAGAAC+TGG + chr6_1:77949917-77949936 None:intergenic 35.0%
TTCTTTCTGATTGCAGTTAC+CGG - chr6_1:77949918-77949937 Msa0893470:intron 35.0%
!!! ATTTTAGGGTGTTCTTGAAG+AGG - chr6_1:77950201-77950220 Msa0893470:intron 35.0%
TTCCGGATGTTTATGTTCTT+CGG - chr6_1:77950425-77950444 Msa0893470:CDS 35.0%
CTTTGTACATGAACATGGTT+TGG - chr6_1:77950485-77950504 Msa0893470:five_prime_UTR 35.0%
ATCACTGTCTTCATCTCATA+AGG + chr6_1:77950545-77950564 None:intergenic 35.0%
AGTGATCATGAGCATACTTT+AGG - chr6_1:77950559-77950578 Msa0893470:five_prime_UTR 35.0%
GTGATCATGAGCATACTTTA+GGG - chr6_1:77950560-77950579 Msa0893470:five_prime_UTR 35.0%
TCAGTACTTAACCTCTTTGT+AGG - chr6_1:77950588-77950607 Msa0893470:five_prime_UTR 35.0%
TAGTCTAGATTCCTACAAAG+AGG + chr6_1:77950602-77950621 None:intergenic 35.0%
ACTACTATGAAATCCGGTGA+AGG - chr6_1:77946464-77946483 Msa0893470:three_prime_UTR 40.0%
CTCAAGAATCATAAGACACG+TGG + chr6_1:77946540-77946559 None:intergenic 40.0%
TTGCGCACATGTCTTTATGA+AGG - chr6_1:77946566-77946585 Msa0893470:three_prime_UTR 40.0%
!!! GAAACATGGTTTTGAGCTAC+TGG - chr6_1:77946970-77946989 Msa0893470:CDS 40.0%
CTACTCAGAGAGAACAAGAA+TGG - chr6_1:77947131-77947150 Msa0893470:CDS 40.0%
! GTTATGAAGGGTGTAACACA+TGG - chr6_1:77947380-77947399 Msa0893470:CDS 40.0%
TTCAAAGCCTCAATACGAAC+AGG + chr6_1:77947428-77947447 None:intergenic 40.0%
TTCGGAAGAAAAAGAACGAG+TGG - chr6_1:77947468-77947487 Msa0893470:CDS 40.0%
! TCAGCATCATCAGATGCTTT+TGG + chr6_1:77947539-77947558 None:intergenic 40.0%
GAGAAACTCGAGAAAGAGAA+GGG - chr6_1:77947589-77947608 Msa0893470:CDS 40.0%
AAAGAGAAGGGATGATGAAG+AGG - chr6_1:77947601-77947620 Msa0893470:CDS 40.0%
TAGATCTGCACGGAAAACAA+AGG + chr6_1:77947784-77947803 None:intergenic 40.0%
GGTTTCTGATACCAACCAAT+AGG + chr6_1:77947947-77947966 None:intergenic 40.0%
GAGATTGCTAAGGTTTGTGA+TGG + chr6_1:77948188-77948207 None:intergenic 40.0%
GAACCAAGATGAGATTGCTA+AGG + chr6_1:77948198-77948217 None:intergenic 40.0%
! AGTTTGATATTTCTGCGCAG+AGG - chr6_1:77948332-77948351 Msa0893470:intron 40.0%
GGCTGTTCCCAAAAAAATTC+TGG - chr6_1:77948353-77948372 Msa0893470:intron 40.0%
CTGGAATTGATGAATGTTCC+TGG - chr6_1:77948372-77948391 Msa0893470:intron 40.0%
AACAGTATGATACCTGCAAG+TGG + chr6_1:77948422-77948441 None:intergenic 40.0%
GTTATTCGCCTACTTCAGAA+AGG - chr6_1:77948439-77948458 Msa0893470:CDS 40.0%
GAAAACCCAAGGTTGAGATT+TGG - chr6_1:77948798-77948817 Msa0893470:intron 40.0%
CTTCTCCAAATCTCAACCTT+GGG + chr6_1:77948806-77948825 None:intergenic 40.0%
CAAGGTTGAGATTTGGAGAA+GGG - chr6_1:77948805-77948824 Msa0893470:intron 40.0%
! GGGCAACAACAACTTTTGAA+TGG - chr6_1:77948825-77948844 Msa0893470:intron 40.0%
ACTCCGTGAAGAAGATTTGT+TGG + chr6_1:77948864-77948883 None:intergenic 40.0%
TCGCATATTCATGTTGCCAA+GGG + chr6_1:77948943-77948962 None:intergenic 40.0%
TGTGCCATCTGCATCAATAA+GGG + chr6_1:77948993-77949012 None:intergenic 40.0%
TTGTGCCATCTGCATCAATA+AGG + chr6_1:77948994-77949013 None:intergenic 40.0%
TGGAATTTCTGACGGTCTTA+TGG - chr6_1:77949103-77949122 Msa0893470:intron 40.0%
! GGAATTTCTGACGGTCTTAT+GGG - chr6_1:77949104-77949123 Msa0893470:intron 40.0%
! GAATTTCTGACGGTCTTATG+GGG - chr6_1:77949105-77949124 Msa0893470:intron 40.0%
TGTGGAACAGGATTAAACGA+AGG + chr6_1:77949161-77949180 None:intergenic 40.0%
TTCAAAAACGAAGAGCTCTG+TGG + chr6_1:77949179-77949198 None:intergenic 40.0%
TAAAGGATTTGCATGCGATG+AGG + chr6_1:77949420-77949439 None:intergenic 40.0%
TCGCATGCAAATCCTTTACA+TGG - chr6_1:77949422-77949441 Msa0893470:CDS 40.0%
ACATCGATGTTGCCATGTAA+AGG + chr6_1:77949437-77949456 None:intergenic 40.0%
GGAAAATCTCCTTTCTCTCT+TGG - chr6_1:77949533-77949552 Msa0893470:intron 40.0%
CAAGGTAATCTCCAAAATGG+TGG - chr6_1:77949569-77949588 Msa0893470:intron 40.0%
!! AATGTTGACTGCCACCATTT+TGG + chr6_1:77949583-77949602 None:intergenic 40.0%
ATCAGGGAAGAGGTTAGTAT+GGG + chr6_1:77949669-77949688 None:intergenic 40.0%
TATCAGGGAAGAGGTTAGTA+TGG + chr6_1:77949670-77949689 None:intergenic 40.0%
ACCTCTTCCCTGATAATTTC+GGG - chr6_1:77949675-77949694 Msa0893470:CDS 40.0%
GTGACAGCAACTATTTACAC+CGG + chr6_1:77949940-77949959 None:intergenic 40.0%
CTGGGAGTAGTGTACTATAA+TGG - chr6_1:77950055-77950074 Msa0893470:intron 40.0%
TTGACCGCATAAAATGCACA+AGG - chr6_1:77950125-77950144 Msa0893470:intron 40.0%
! CATGCCTTGTGCATTTTATG+CGG + chr6_1:77950132-77950151 None:intergenic 40.0%
! TGTTCTTGAAGAGGTATGCT+TGG - chr6_1:77950210-77950229 Msa0893470:intron 40.0%
! GTTCTTGAAGAGGTATGCTT+GGG - chr6_1:77950211-77950230 Msa0893470:intron 40.0%
ATAAATCTGCAAACTCGCGT+AGG - chr6_1:77950264-77950283 Msa0893470:intron 40.0%
GACCGAAGAACATAAACATC+CGG + chr6_1:77950430-77950449 None:intergenic 40.0%
AAACTGATCGGAACCTTCAC+CGG + chr6_1:77946480-77946499 None:intergenic 45.0%
TGAAGGTTCCGATCAGTTTC+CGG - chr6_1:77946481-77946500 Msa0893470:three_prime_UTR 45.0%
TGATGTGCATATGCCAGACA+TGG - chr6_1:77947172-77947191 Msa0893470:CDS 45.0%
GAAGAACATATGGCAGCATG+TGG - chr6_1:77947445-77947464 Msa0893470:CDS 45.0%
ACATATGGCAGCATGTGGTT+CGG - chr6_1:77947450-77947469 Msa0893470:CDS 45.0%
GGAGAAACTCGAGAAAGAGA+AGG - chr6_1:77947588-77947607 Msa0893470:CDS 45.0%
AGAAGGGATGATGAAGAGGA+AGG - chr6_1:77947605-77947624 Msa0893470:CDS 45.0%
CGTCAACACTAAAGAAGCCT+CGG - chr6_1:77947645-77947664 Msa0893470:CDS 45.0%
GTCAACACTAAAGAAGCCTC+GGG - chr6_1:77947646-77947665 Msa0893470:CDS 45.0%
! TAAAGAAGCCTCGGGTTGTT+TGG - chr6_1:77947654-77947673 Msa0893470:CDS 45.0%
! ACATTTTCTCTAGTGAGCCC+AGG + chr6_1:77948393-77948412 None:intergenic 45.0%
!! ACTTGGGTCCTTTCTGAAGT+AGG + chr6_1:77948450-77948469 None:intergenic 45.0%
TTCTTGTGGTCATCTAACGG+AGG - chr6_1:77948491-77948510 Msa0893470:intron 45.0%
TTGTATCTTCGAAGGCTGAG+TGG - chr6_1:77948558-77948577 Msa0893470:intron 45.0%
TTCATTTCTCAGCCCACAAG+AGG - chr6_1:77948602-77948621 Msa0893470:intron 45.0%
TGCCAAATGATGCCTCTTGT+GGG + chr6_1:77948617-77948636 None:intergenic 45.0%
GGCACGATTTCGTCAATGAA+CGG - chr6_1:77948633-77948652 Msa0893470:intron 45.0%
GGTAGGTCAACTGTGAAATC+AGG - chr6_1:77948732-77948751 Msa0893470:intron 45.0%
! CTTTGATCCATGAGAGGCAT+TGG + chr6_1:77948762-77948781 None:intergenic 45.0%
CAATGCCTCTCATGGATCAA+AGG - chr6_1:77948760-77948779 Msa0893470:intron 45.0%
AGGTTCCTTTGATCCATGAG+AGG + chr6_1:77948768-77948787 None:intergenic 45.0%
CCTTCTCCAAATCTCAACCT+TGG + chr6_1:77948807-77948826 None:intergenic 45.0%
CCAAGGTTGAGATTTGGAGA+AGG - chr6_1:77948804-77948823 Msa0893470:intron 45.0%
TCACGGAGTTCCTACTAACA+TGG - chr6_1:77948875-77948894 Msa0893470:intron 45.0%
! TGCTTTGGCTCCATGTTAGT+AGG + chr6_1:77948888-77948907 None:intergenic 45.0%
TGCAAATTGGCGAGTTGCTT+TGG + chr6_1:77948903-77948922 None:intergenic 45.0%
CTCGCATATTCATGTTGCCA+AGG + chr6_1:77948944-77948963 None:intergenic 45.0%
ATTTCCCTGTGTAGCAGAAG+CGG + chr6_1:77948970-77948989 None:intergenic 45.0%
! TAGCATTGGACCTCTAGGTT+GGG + chr6_1:77949018-77949037 None:intergenic 45.0%
! TTAGCATTGGACCTCTAGGT+TGG + chr6_1:77949019-77949038 None:intergenic 45.0%
! TCACTTAGCATTGGACCTCT+AGG + chr6_1:77949023-77949042 None:intergenic 45.0%
TCCAAGATTACCGAACCTCT+TGG - chr6_1:77949061-77949080 Msa0893470:intron 45.0%
CCAAGATTACCGAACCTCTT+GGG - chr6_1:77949062-77949081 Msa0893470:intron 45.0%
CAAGATTACCGAACCTCTTG+GGG - chr6_1:77949063-77949082 Msa0893470:intron 45.0%
! TTCGGCTTGAAATGAGCCTT+TGG + chr6_1:77949282-77949301 None:intergenic 45.0%
TCGGGAATTAAAGGATCAGC+TGG - chr6_1:77949308-77949327 Msa0893470:CDS 45.0%
AACTGAACCAGCAGAAATCC+CGG - chr6_1:77949357-77949376 Msa0893470:CDS 45.0%
!! AGAAGCATCTCTGCTATGTC+CGG + chr6_1:77949507-77949526 None:intergenic 45.0%
AGCAGAGATGCTTCTTTGCT+TGG - chr6_1:77949512-77949531 Msa0893470:intron 45.0%
TCTCCTTTCTCTCTTGGAGA+AGG - chr6_1:77949539-77949558 Msa0893470:intron 45.0%
AAGCCTTCTCCAAGAGAGAA+AGG + chr6_1:77949545-77949564 None:intergenic 45.0%
TTTCTCTCTTGGAGAAGGCT+TGG - chr6_1:77949544-77949563 Msa0893470:intron 45.0%
CATCCTGCCCGAAATTATCA+GGG + chr6_1:77949685-77949704 None:intergenic 45.0%
TCATCCTGCCCGAAATTATC+AGG + chr6_1:77949686-77949705 None:intergenic 45.0%
!! CATGAGTGCACTTCTGAAAC+AGG - chr6_1:77949709-77949728 Msa0893470:CDS 45.0%
TTGTGTTTCTTGCAGCAGGA+AGG - chr6_1:77949818-77949837 Msa0893470:intron 45.0%
! TGACTTTGACGGGTATTCTC+TGG - chr6_1:77949862-77949881 Msa0893470:intron 45.0%
! TGAAGAGGTATGCTTGGGTT+AGG - chr6_1:77950216-77950235 Msa0893470:intron 45.0%
! GAAGAGGTATGCTTGGGTTA+GGG - chr6_1:77950217-77950236 Msa0893470:intron 45.0%
TAAACCCGCCGGAAACTGAT+CGG + chr6_1:77946492-77946511 None:intergenic 50.0%
GGGTTTACGAGTTCTCGTTG+TGG - chr6_1:77946505-77946524 Msa0893470:three_prime_UTR 50.0%
GTGCATATGCCAGACATGGA+TGG - chr6_1:77947176-77947195 Msa0893470:CDS 50.0%
GTAGTGATGTCTGCCGATGA+TGG - chr6_1:77947347-77947366 Msa0893470:CDS 50.0%
GTGGAAAGATACGGAGCAGT+CGG - chr6_1:77947487-77947506 Msa0893470:CDS 50.0%
TGGAAAGATACGGAGCAGTC+GGG - chr6_1:77947488-77947507 Msa0893470:CDS 50.0%
CGAGCTCCATCAACAGTTTG+TGG - chr6_1:77947682-77947701 Msa0893470:CDS 50.0%
CAGCAGCCACAAACTGTTGA+TGG + chr6_1:77947691-77947710 None:intergenic 50.0%
TCAACAGTTTGTGGCTGCTG+TGG - chr6_1:77947691-77947710 Msa0893470:CDS 50.0%
GACAGTATGTATCCTCACCC+AGG - chr6_1:77947728-77947747 Msa0893470:CDS 50.0%
!! CTTTTGAAGAGTCCTGGGTG+AGG + chr6_1:77947743-77947762 None:intergenic 50.0%
AAATGTTGCCAGCCACTTGC+AGG - chr6_1:77948407-77948426 Msa0893470:intron 50.0%
GTATGATACCTGCAAGTGGC+TGG + chr6_1:77948418-77948437 None:intergenic 50.0%
!! AGCCCACAAGAGGCATCATT+TGG - chr6_1:77948612-77948631 Msa0893470:intron 50.0%
GTGCCAAATGATGCCTCTTG+TGG + chr6_1:77948618-77948637 None:intergenic 50.0%
CAGCTGCTGCAAGAGTTTGA+AGG + chr6_1:77948665-77948684 None:intergenic 50.0%
CTTCAAACTCTTGCAGCAGC+TGG - chr6_1:77948663-77948682 Msa0893470:intron 50.0%
! AAGTCCTGCTGCTTGAAGAG+TGG + chr6_1:77948712-77948731 None:intergenic 50.0%
ACTCTTCAAGCAGCAGGACT+TGG - chr6_1:77948711-77948730 Msa0893470:intron 50.0%
! TTCAAGCAGCAGGACTTGGT+AGG - chr6_1:77948715-77948734 Msa0893470:intron 50.0%
AGGCTTACCAATGCCTCTCA+TGG - chr6_1:77948752-77948771 Msa0893470:intron 50.0%
TGCTGCAGACTGGTGCAAAT+TGG + chr6_1:77948916-77948935 None:intergenic 50.0%
TTTCCCTGTGTAGCAGAAGC+GGG + chr6_1:77948969-77948988 None:intergenic 50.0%
ATGGCACAATCCCAACCTAG+AGG - chr6_1:77949005-77949024 Msa0893470:intron 50.0%
! CCCAAGAGGTTCGGTAATCT+TGG + chr6_1:77949065-77949084 None:intergenic 50.0%
GGGCAGTCTACTGTGTCAAA+TGG - chr6_1:77949083-77949102 Msa0893470:intron 50.0%
AACGAAGAGCTCTGTGGAAC+AGG + chr6_1:77949173-77949192 None:intergenic 50.0%
! TACCTGGAGTGCTTCCAAGA+GGG + chr6_1:77949244-77949263 None:intergenic 50.0%
! ATACCTGGAGTGCTTCCAAG+AGG + chr6_1:77949245-77949264 None:intergenic 50.0%
ACTGAACCAGCAGAAATCCC+GGG - chr6_1:77949358-77949377 Msa0893470:CDS 50.0%
GATTGGGGGATGACAAACCA+AGG - chr6_1:77949380-77949399 Msa0893470:CDS 50.0%
CAACATCGATGTCTCTCCGT+CGG - chr6_1:77949445-77949464 Msa0893470:CDS 50.0%
!!! TCCGTCGGTTTTAGTCCATC+AGG - chr6_1:77949460-77949479 Msa0893470:CDS 50.0%
!! CCCTGATGGACTAAAACCGA+CGG + chr6_1:77949464-77949483 None:intergenic 50.0%
!!! CCGTCGGTTTTAGTCCATCA+GGG - chr6_1:77949461-77949480 Msa0893470:CDS 50.0%
GAGCAGAAGAAAAGCCCTGA+TGG + chr6_1:77949478-77949497 None:intergenic 50.0%
CTTGGAGAAGGCTTGGAACA+AGG - chr6_1:77949551-77949570 Msa0893470:intron 50.0%
GCCCGAAATTATCAGGGAAG+AGG + chr6_1:77949679-77949698 None:intergenic 50.0%
CTTCCCTGATAATTTCGGGC+AGG - chr6_1:77949679-77949698 Msa0893470:CDS 50.0%
! TTCTTGCAGCAGGAAGGCAT+TGG - chr6_1:77949824-77949843 Msa0893470:intron 50.0%
AGGGCAGAATTGCAGAAGCA+AGG - chr6_1:77950236-77950255 Msa0893470:intron 50.0%
AGGTTCCGATCAGTTTCCGG+CGG - chr6_1:77946484-77946503 Msa0893470:three_prime_UTR 55.0%
ACGAGAACTCGTAAACCCGC+CGG + chr6_1:77946503-77946522 None:intergenic 55.0%
TCGACAGACCAAACAACCCG+AGG + chr6_1:77947665-77947684 None:intergenic 55.0%
GTGGCTGCTGTGGATCAACT+AGG - chr6_1:77947701-77947720 Msa0893470:CDS 55.0%
GAGTGGCTAGACTTTGCGCT+GGG + chr6_1:77948695-77948714 None:intergenic 55.0%
AGAGTGGCTAGACTTTGCGC+TGG + chr6_1:77948696-77948715 None:intergenic 55.0%
CTAGCCACTCTTCAAGCAGC+AGG - chr6_1:77948705-77948724 Msa0893470:intron 55.0%
TTCCCTGTGTAGCAGAAGCG+GGG + chr6_1:77948968-77948987 None:intergenic 55.0%
GTAGACTGCCCCAAGAGGTT+CGG + chr6_1:77949074-77949093 None:intergenic 55.0%
ACACAGTAGACTGCCCCAAG+AGG + chr6_1:77949079-77949098 None:intergenic 55.0%
!! TTCCCTCTTGGAAGCACTCC+AGG - chr6_1:77949239-77949258 Msa0893470:CDS 55.0%
ACCAGCAGAAATCCCGGGAT+TGG - chr6_1:77949363-77949382 Msa0893470:CDS 55.0%
CCAGCAGAAATCCCGGGATT+GGG - chr6_1:77949364-77949383 Msa0893470:CDS 55.0%
CAGCAGAAATCCCGGGATTG+GGG - chr6_1:77949365-77949384 Msa0893470:CDS 55.0%
AGCAGAAATCCCGGGATTGG+GGG - chr6_1:77949366-77949385 Msa0893470:CDS 55.0%
GTTTGTCATCCCCCAATCCC+GGG + chr6_1:77949378-77949397 None:intergenic 55.0%
GGTTTGTCATCCCCCAATCC+CGG + chr6_1:77949379-77949398 None:intergenic 55.0%
TTAGTATGGGAGCTCGCGTC+AGG + chr6_1:77949656-77949675 None:intergenic 55.0%
GGCGAGAGTCTCTTCTAGAC+AGG + chr6_1:77949896-77949915 None:intergenic 55.0%
GGTTCCGATCAGTTTCCGGC+GGG - chr6_1:77946485-77946504 Msa0893470:three_prime_UTR 60.0%
!! CAGTCGGGTAGTGCTGACGA+GGG - chr6_1:77947503-77947522 Msa0893470:CDS 60.0%
CTAGACTTTGCGCTGGGAGC+TGG + chr6_1:77948689-77948708 None:intergenic 60.0%
CAAGGGACTGTGCTGCAGAC+TGG + chr6_1:77948926-77948945 None:intergenic 60.0%
CAGTCTGCAGCACAGTCCCT+TGG - chr6_1:77948924-77948943 Msa0893470:intron 60.0%
AGTCCCCGCTTCTGCTACAC+AGG - chr6_1:77948962-77948981 Msa0893470:intron 60.0%
GTCCCCGCTTCTGCTACACA+GGG - chr6_1:77948963-77948982 Msa0893470:intron 60.0%
CCCAATCCCGGGATTTCTGC+TGG + chr6_1:77949367-77949386 None:intergenic 60.0%
!! GCAGTCGGGTAGTGCTGACG+AGG - chr6_1:77947502-77947521 Msa0893470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 77946229 77950629 77946229 ID=Msa0893470;Name=Msa0893470
chr6_1 mRNA 77946229 77950629 77946229 ID=Msa0893470-mRNA-1;Parent=Msa0893470;Name=Msa0893470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=178|1|1|1|1|1|6|728|680
chr6_1 exon 77946229 77947025 77946229 ID=Msa0893470-mRNA-1:exon:12898;Parent=Msa0893470-mRNA-1
chr6_1 exon 77947128 77948309 77947128 ID=Msa0893470-mRNA-1:exon:12897;Parent=Msa0893470-mRNA-1
chr6_1 exon 77948430 77948506 77948430 ID=Msa0893470-mRNA-1:exon:12896;Parent=Msa0893470-mRNA-1
chr6_1 exon 77949127 77949507 77949127 ID=Msa0893470-mRNA-1:exon:12895;Parent=Msa0893470-mRNA-1
chr6_1 exon 77949610 77949762 77949610 ID=Msa0893470-mRNA-1:exon:12894;Parent=Msa0893470-mRNA-1
chr6_1 exon 77950271 77950629 77950271 ID=Msa0893470-mRNA-1:exon:12893;Parent=Msa0893470-mRNA-1
chr6_1 five_prime_UTR 77950452 77950629 77950452 ID=Msa0893470-mRNA-1:five_prime_utr;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77950271 77950451 77950271 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77949610 77949762 77949610 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77949127 77949507 77949127 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77948430 77948506 77948430 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77947128 77948309 77947128 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 CDS 77946957 77947025 77946957 ID=Msa0893470-mRNA-1:cds;Parent=Msa0893470-mRNA-1
chr6_1 three_prime_UTR 77946229 77946956 77946229 ID=Msa0893470-mRNA-1:three_prime_utr;Parent=Msa0893470-mRNA-1
Gene Sequence

>Msa0893470

ATGATGAATCTAAGCAACAACGGAAAAGGATCAATATCAACTGTTACTTCAACTGCTACTACTATGAAATCCGGTGAAGGTTCCGATCAGTTTCCGGCGGGTTTACGAGTTCTCGTTGTGGATGATGATCCCACGTGTCTTATGATTCTTGAGAAGATGTTGCGCACATGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAGACTGCGCTTTCGCTACTCAGAGAGAACAAGAATGGATTTGATATTGTTATTAGTGATGTGCATATGCCAGACATGGATGGATTTAAACTCTTAGAACATATTGGATTGGAAATGGACCTTCCAGTTATTATGATGTCTGCCGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACATGGTGCTTGTGATTACTTGATTAAACCTGTTCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAAAAGAACGAGTGGAAAGATACGGAGCAGTCGGGTAGTGCTGACGAGGGAGATCGACATCCAAAAGCATCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGAAATTGGAGAAACTCGAGAAAGAGAAGGGATGATGAAGAGGAAGGTGACGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGGGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTAGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACTTGCAGAAATATCGATTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAATTCATTTCTCAGCCCACAAGAGGCATCATTTGGCACGATTTCGTCAATGAACGGACTTGACCTTCAAACTCTTGCAGCAGCTGGCCAGCTCCCAGCGCAAAGTCTAGCCACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGTGAAATCAGGCTTACCAATGCCTCTCATGGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGGTTGAGATTTGGAGAAGGGCAACAACAACTTTTGAATGGTAGTAATAATAAACCAACAAATCTTCTTCACGGAGTTCCTACTAACATGGAGCCAAAGCAACTCGCCAATTTGCACCAGTCTGCAGCACAGTCCCTTGGCAACATGAATATGCGAGTCCCCGCTTCTGCTACACAGGGAAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCCAATGCTAAGTGAAAATACTGGTTCTCATGTTCCAAGATTACCGAACCTCTTGGGGCAGTCTACTGTGTCAAATGGAATTTCTGACGGTCTTATGGGGAGAAATAACATGGCTAGTAGCAGTAGAGTGCCTTCGTTTAATCCTGTTCCACAGAGCTCTTCGTTTTTGAATTTTCCCATGAATCAAAGCACTGAAATGTCTGTTAGTAATTTCCCTCTTGGAAGCACTCCAGGTATATCTAGTATCACAACCAAAGGCTCATTTCAAGCCGAAGTTAATTCGGGAATTAAAGGATCAGCTGGATTTCCAAGTTATGATATTTTTAACGAACTGAACCAGCAGAAATCCCGGGATTGGGGGATGACAAACCAAGGTCTAACATATGATTCCTCATCGCATGCAAATCCTTTACATGGCAACATCGATGTCTCTCCGTCGGTTTTAGTCCATCAGGGCTTTTCTTCTGCTCAACAAACCGGACATAGCAGAGATGCTTCTTTGCTTGGAAAATCTCCTTTCTCTCTTGGAGAAGGCTTGGAACAAGGTAATCTCCAAAATGGTGGCAGTCAACATTTCAATCCTCTTTATGTTGAAAATTCAACAAGGGTTAAGGCTGAAAGAGTTCCTGACGCGAGCTCCCATACTAACCTCTTCCCTGATAATTTCGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAGGAAGGCATTGGACGCGAGAATGAGTTTGACTTTGACGGGTATTCTCTGGACAACATTCCTGTCTAG
Protein sequence

>Msa0893470

MMNLSNNGKGSISTVTSTATTMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEEGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNSFLSPQEASFGTISSMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKSGLPMPLMDQRNLFSFENPRLRFGEGQQQLLNGSNNKPTNLLHGVPTNMEPKQLANLHQSAAQSLGNMNMRVPASATQGNPLLMQMAQSQPRGPMLSENTGSHVPRLPNLLGQSTVSNGISDGLMGRNNMASSSRVPSFNPVPQSSSFLNFPMNQSTEMSVSNFPLGSTPGISSITTKGSFQAEVNSGIKGSAGFPSYDIFNELNQQKSRDWGMTNQGLTYDSSSHANPLHGNIDVSPSVLVHQGFSSAQQTGHSRDASLLGKSPFSLGEGLEQGNLQNGGSQHFNPLYVENSTRVKAERVPDASSHTNLFPDNFGQDDLMSALLKQQEGIGRENEFDFDGYSLDNIPV*