AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156660 MtrunA17_Chr7g0250291 99.248 266 2 0 1 266 1 266 0.0 546
Msa1156660 MtrunA17_Chr8g0335681 79.699 266 50 2 1 266 1 262 3.66e-154 430
Msa1156660 MtrunA17_Chr4g0022101 60.684 234 89 2 32 264 1 232 1.22e-101 296
Msa1156660 MtrunA17_Chr3g0122601 59.504 242 97 1 25 265 20 261 1.42e-99 291
Msa1156660 MtrunA17_Chr7g0254541 54.430 237 107 1 29 264 81 317 1.12e-90 271
Msa1156660 MtrunA17_Chr0c29g0494021 100.000 91 0 0 176 266 1 91 2.04e-60 186
Msa1156660 MtrunA17_Chr0c29g0494041 98.305 59 1 0 1 59 1 59 1.35e-35 121
Msa1156660 MtrunA17_Chr0c29g0494031 100.000 38 0 0 90 127 5 42 1.67e-21 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156660 AT2G44770.1 81.955 266 48 0 1 266 1 266 3.01e-166 461
Msa1156660 AT3G60260.2 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1156660 AT3G60260.4 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1156660 AT3G60260.1 79.699 266 54 0 1 266 1 266 1.22e-164 457
Msa1156660 AT3G60260.3 78.151 238 52 0 29 266 7 244 1.08e-143 403
Msa1156660 AT1G67400.1 56.349 252 105 2 15 265 34 281 1.98e-103 302
Msa1156660 AT1G03620.8 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.10 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.9 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.1 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.7 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.4 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.5 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.11 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.13 57.563 238 97 2 28 264 29 263 3.43e-99 291
Msa1156660 AT1G03620.3 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1156660 AT1G03620.6 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1156660 AT1G03620.2 58.974 234 92 3 32 264 1 231 6.62e-99 289
Msa1156660 AT1G03620.12 58.403 238 95 3 28 264 61 295 1.34e-98 291
Msa1156660 AT3G03610.1 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1156660 AT3G03610.3 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1156660 AT3G03610.2 56.485 239 103 1 29 266 85 323 3.34e-93 278
Msa1156660 AT3G03610.4 56.485 239 103 1 29 266 97 335 3.38e-93 278
Msa1156660 AT3G43400.1 60.993 141 51 1 97 237 71 207 5.89e-59 187

Find 115 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAATCTAATAGGGTTTA+TGG 0.199304 7_4:+45037639 None:intergenic
AGGAATCCTTAAGGGCTTTA+TGG 0.211377 7_4:-45035606 Msa1156660:CDS
ATTTCGTTAATGTCCATTAA+TGG 0.214294 7_4:-45032751 Msa1156660:three_prime_UTR
GAGAAAAGAAAGAATCTAAT+AGG 0.219964 7_4:+45037631 None:intergenic
AAAGAGAAAGAGAAAGAAAA+TGG 0.231105 7_4:+45037607 None:intergenic
TTCTCTTTCTCTTTCTTTCC+CGG 0.240069 7_4:-45037598 Msa1156660:five_prime_UTR
ACAGAACAAGATCGTAAAAT+TGG 0.286763 7_4:+45032532 None:intergenic
TATACACGCTTCCTATCTTT+TGG 0.308112 7_4:-45032563 Msa1156660:three_prime_UTR
TTTCGTTAATGTCCATTAAT+GGG 0.319926 7_4:-45032750 Msa1156660:three_prime_UTR
CAAGACGAAGAATTGGAAAA+TGG 0.334305 7_4:-45037344 Msa1156660:exon
GAGTACCCATTTGCGGTTGC+TGG 0.375334 7_4:-45034306 Msa1156660:CDS
CTTGTTCTGTTCTATTCAAC+AGG 0.384182 7_4:-45032519 None:intergenic
CATCAATCAAGACGAAGAAT+TGG 0.385112 7_4:-45037351 Msa1156660:five_prime_UTR
CCTGTTGGAGGATGTATTGC+TGG 0.385839 7_4:-45032863 Msa1156660:three_prime_UTR
AGATCATACCGGAAAATTCC+TGG 0.390564 7_4:+45035360 None:intergenic
GGATTGCAGTATCATAATTC+AGG 0.399167 7_4:-45032720 Msa1156660:three_prime_UTR
ATCTACCTAAAATCTGTTGA+TGG 0.403619 7_4:+45035505 None:intergenic
AGCATTCCATAAAGCCCTTA+AGG 0.404955 7_4:+45035600 None:intergenic
TGGACATTAACGAAATATAT+AGG 0.406419 7_4:+45032758 None:intergenic
CTAGTTGTGTAAGGTCTTCA+AGG 0.412328 7_4:+45033095 None:intergenic
ACTTTCTTAAAATTCCTTGC+AGG 0.415890 7_4:-45033758 Msa1156660:intron
AAACAAAGAAAACGCCTTAA+CGG 0.416484 7_4:-45037739 Msa1156660:five_prime_UTR
TCACCACCACGACCGCGAAC+TGG 0.416741 7_4:+45037432 None:intergenic
TGTCCATTAATGGGAAAATA+CGG 0.419631 7_4:-45032741 Msa1156660:three_prime_UTR
TTAACACCAGCAACCGCAAA+TGG 0.419764 7_4:+45034300 None:intergenic
GAAGAGACTACCTGGTGCTC+AGG 0.420184 7_4:+45035818 None:intergenic
AAATGTAGGTTTGCTTTGCT+TGG 0.423318 7_4:-45032816 Msa1156660:three_prime_UTR
CCAACAAATATTACCTGGTA+TGG 0.428837 7_4:+45036243 None:intergenic
TCAGGCAGGTTTACTAAAGT+TGG 0.432978 7_4:-45032702 Msa1156660:three_prime_UTR
GAAATCTACACGCCGTCAGC+TGG 0.434732 7_4:-45033131 Msa1156660:CDS
AGAAAAGAAAGAATCTAATA+GGG 0.436025 7_4:+45037632 None:intergenic
TTCCATGCACGCGTCATACA+TGG 0.440337 7_4:-45033323 Msa1156660:CDS
TCTCTTTCTCTTTCTTTCCC+GGG 0.440747 7_4:-45037597 Msa1156660:five_prime_UTR
TGGCGACAATACCAAAAGAT+AGG 0.444654 7_4:+45032552 None:intergenic
TTGCTGGCTGACATACAGTC+AGG 0.450369 7_4:-45032847 Msa1156660:three_prime_UTR
GATGATCTTAGGAATCCTTA+AGG 0.450878 7_4:-45035615 Msa1156660:intron
AAGCCATTGAGTTCTTCTTC+AGG 0.450943 7_4:+45035571 None:intergenic
ATGATCTTAGGAATCCTTAA+GGG 0.451275 7_4:-45035614 Msa1156660:intron
CATATCATTGGCAGGGGTGG+TGG 0.452395 7_4:-45035415 Msa1156660:intron
TCGTGTGAGAAGTTTGTATG+AGG 0.455180 7_4:+45033063 None:intergenic
GTGTGATATCATCAAGGGTC+TGG 0.458653 7_4:-45032907 Msa1156660:three_prime_UTR
AGGAAGAAACGGTTAGAAAG+TGG 0.463798 7_4:+45037538 None:intergenic
AGAAAGATCTGGAACAGGTT+GGG 0.475602 7_4:+45037562 None:intergenic
GTTACAGCTGAGTTTGTGAC+AGG 0.476804 7_4:-45036351 Msa1156660:intron
TAGAAAGTGGAAGAAAGATC+TGG 0.486762 7_4:+45037551 None:intergenic
GTACATCTTCTAGTTGTGTA+AGG 0.487362 7_4:+45033086 None:intergenic
AACGCGTACCATTCATCTTC+CGG 0.493195 7_4:-45037262 Msa1156660:intron
GGGTGGTGGTTACATATCAT+TGG 0.494330 7_4:-45035401 Msa1156660:CDS
TGGAAAGACATGGGCTGGCA+AGG 0.494938 7_4:-45035535 Msa1156660:CDS
AGTTAAGATTTAAATCCTGT+TGG 0.496510 7_4:-45032878 Msa1156660:three_prime_UTR
TAAGATTTAAATCCTGTTGG+AGG 0.497097 7_4:-45032875 Msa1156660:three_prime_UTR
GTGGAAGAAAGATCTGGAAC+AGG 0.499036 7_4:+45037557 None:intergenic
AGCAGTGGAAAGACATGGGC+TGG 0.501356 7_4:-45035540 Msa1156660:CDS
TGCAGTATCATAATTCAGGC+AGG 0.504316 7_4:-45032716 Msa1156660:three_prime_UTR
TCAAGCTGATGGACAATCAA+TGG 0.510235 7_4:-45033348 Msa1156660:CDS
ATTGAATACCGGAAGATGAA+TGG 0.510688 7_4:+45037254 None:intergenic
ACAGGATCAACGGCATGGAT+TGG 0.515977 7_4:-45036333 Msa1156660:CDS
CCAGCAATACATCCTCCAAC+AGG 0.516020 7_4:+45032863 None:intergenic
TTGCATAACATTCAAGCTGA+TGG 0.521212 7_4:-45033359 Msa1156660:CDS
ATCCATGTATGACGCGTGCA+TGG 0.526326 7_4:+45033321 None:intergenic
AGACATGGGCTGGCAAGGGA+AGG 0.528180 7_4:-45035530 Msa1156660:CDS
TAGTTCTATCCCTGAGCACC+AGG 0.531050 7_4:-45035828 Msa1156660:intron
TTTCCTGAAGAAGAACTCAA+TGG 0.539229 7_4:-45035574 Msa1156660:CDS
TGTTAGTTAAATGTTGAAGT+GGG 0.539821 7_4:+45032956 None:intergenic
CAAATGCTAGATCTTGAAGC+AGG 0.539920 7_4:-45034258 Msa1156660:intron
GACAGTTAAGCCACGGACAC+TGG 0.542936 7_4:-45033789 Msa1156660:intron
TAACACCAGCAACCGCAAAT+GGG 0.546447 7_4:+45034301 None:intergenic
ATGTTAGTTAAATGTTGAAG+TGG 0.548053 7_4:+45032955 None:intergenic
GTCAGGGGAGTCTGAAATGT+AGG 0.554862 7_4:-45032830 Msa1156660:three_prime_UTR
AAGAAAGATCTGGAACAGGT+TGG 0.554968 7_4:+45037561 None:intergenic
AATTGGAAAATGGATGATAG+AGG 0.555587 7_4:-45037334 Msa1156660:exon
TCAACGGCATGGATTGGCCG+AGG 0.555638 7_4:-45036327 Msa1156660:CDS
AATAATAAAGTAATAAAATG+TGG 0.559523 7_4:-45037833 None:intergenic
AGTGTGGGAGTACCCATTTG+CGG 0.560410 7_4:-45034313 Msa1156660:CDS
CCTTCAAGTTAAAACTAGAC+TGG 0.566016 7_4:+45033019 None:intergenic
TGGTATACATGAAGGAGCGC+AGG 0.569758 7_4:-45037813 Msa1156660:five_prime_UTR
CACATACACAAGACAAACCT+CGG 0.571165 7_4:+45036310 None:intergenic
ATGGCTTGATTTCAGAGCAG+TGG 0.573093 7_4:-45035555 Msa1156660:CDS
GGAAAGACATGGGCTGGCAA+GGG 0.574077 7_4:-45035534 Msa1156660:CDS
ATAAAATGTGGTATACATGA+AGG 0.576158 7_4:-45037821 Msa1156660:five_prime_UTR
AGCCATGTGTGATATCATCA+AGG 0.579526 7_4:-45032913 Msa1156660:three_prime_UTR
AACAATAAAAGCTACCTGCA+AGG 0.580109 7_4:+45033744 None:intergenic
AAGAGACTACCTGGTGCTCA+GGG 0.585963 7_4:+45035819 None:intergenic
TCAGGGATAGAACTATCATA+TGG 0.590812 7_4:+45035836 None:intergenic
TTTCCAGTTCGCGGTCGTGG+TGG 0.593806 7_4:-45037435 Msa1156660:five_prime_UTR
TGAGTTTGTGACAGGATCAA+CGG 0.595004 7_4:-45036343 Msa1156660:CDS
TTCAGGAAGAATGCTTGCAG+AGG 0.599345 7_4:-45035880 Msa1156660:intron
GGAAGGAGTTCGTTCAGTGT+GGG 0.599733 7_4:-45034328 Msa1156660:CDS
AAATGTTGAAGTGGGAAGAG+CGG 0.600690 7_4:+45032964 None:intergenic
TTCAGAGCAGTGGAAAGACA+TGG 0.604712 7_4:-45035545 Msa1156660:CDS
TGATATCATCAAGGGTCTGG+AGG 0.605312 7_4:-45032904 Msa1156660:three_prime_UTR
TTGTGACAGGATCAACGGCA+TGG 0.606238 7_4:-45036338 Msa1156660:CDS
AGGAAGGAGTTCGTTCAGTG+TGG 0.607173 7_4:-45034329 Msa1156660:CDS
AGTTAAGCCACGGACACTGG+TGG 0.607277 7_4:-45033786 Msa1156660:CDS
TGCTGGCTGACATACAGTCA+GGG 0.616409 7_4:-45032846 Msa1156660:three_prime_UTR
AAATATGCAGTAAACGAACA+AGG 0.621068 7_4:+45032666 None:intergenic
ATATCACACATGGCTCACCT+TGG 0.623252 7_4:+45032921 None:intergenic
CGTGTGAGAAGTTTGTATGA+GGG 0.626967 7_4:+45033064 None:intergenic
GAAGTTCTTTCTCCAGCTGA+CGG 0.629691 7_4:+45033119 None:intergenic
TATGCAATAGAGAAGATCAA+AGG 0.629891 7_4:+45033375 None:intergenic
GTTAAGCCACGGACACTGGT+GGG 0.632248 7_4:-45033785 Msa1156660:CDS
TGGAAAATGGATGATAGAGG+TGG 0.635948 7_4:-45037331 Msa1156660:exon
ATTTCACAAGGTCTTGATCG+TGG 0.637712 7_4:-45037286 Msa1156660:CDS
GTGAATTGAATCGAATGCGG+AGG 0.640694 7_4:+45037508 None:intergenic
ACCCTTGATGATATCACACA+TGG 0.657299 7_4:+45032911 None:intergenic
TTTCCTTGACAGTTAAGCCA+CGG 0.658380 7_4:-45033796 Msa1156660:intron
TCAGAGCAGTGGAAAGACAT+GGG 0.661625 7_4:-45035544 Msa1156660:CDS
TCAAGTTAAAACTAGACTGG+CGG 0.673365 7_4:+45033022 None:intergenic
AATATGCAGTAAACGAACAA+GGG 0.678879 7_4:+45032667 None:intergenic
GCTGGCTGACATACAGTCAG+GGG 0.680531 7_4:-45032845 Msa1156660:three_prime_UTR
GCCATGTGTGATATCATCAA+GGG 0.683404 7_4:-45032912 Msa1156660:three_prime_UTR
ATGTCTGACAGAAAATGAGT+CGG 0.689115 7_4:-45033398 Msa1156660:intron
AATGTGAATTGAATCGAATG+CGG 0.707163 7_4:+45037505 None:intergenic
TAACATTTGAGCAAAGACCA+AGG 0.711307 7_4:-45032938 Msa1156660:three_prime_UTR
GCTGTTCGTAGAATTTCACA+AGG 0.713414 7_4:-45037298 Msa1156660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATGTTTAATATATTAT+AGG - chr7_4:45035184-45035203 Msa1156660:intron 10.0%
!! AGAGTAAAAATTATAATAAA+AGG + chr7_4:45036122-45036141 None:intergenic 10.0%
!!! TAAATTGATAAAGTTTTGAT+TGG - chr7_4:45033239-45033258 Msa1156660:intron 15.0%
!!! AATGTTTTTCAATTGTATTT+CGG - chr7_4:45034246-45034265 Msa1156660:intron 15.0%
!! TATATATCTTAAGAATGTAA+CGG - chr7_4:45034683-45034702 Msa1156660:intron 15.0%
!! TGTTTAATATATTATAGGTT+TGG - chr7_4:45035189-45035208 Msa1156660:intron 15.0%
!!! TGTCTTTATTAATCTAATTT+TGG - chr7_4:45035887-45035906 Msa1156660:intron 15.0%
!!! AAATAAATTTTGATTTCTCT+TGG - chr7_4:45036362-45036381 Msa1156660:intron 15.0%
!! ATAGGAAAAAAAATATTGTA+AGG + chr7_4:45036429-45036448 None:intergenic 15.0%
!! AGAAAAGAAAGAATCTAATA+GGG + chr7_4:45032712-45032731 None:intergenic 20.0%
!! TGAATTAATTGAAGTAATCA+CGG - chr7_4:45033652-45033671 Msa1156660:intron 20.0%
!! AAAACTTGTATTAAGAAAGT+TGG - chr7_4:45033933-45033952 Msa1156660:intron 20.0%
!!! ATGTTTTTCAATTGTATTTC+GGG - chr7_4:45034247-45034266 Msa1156660:intron 20.0%
!! TAAGATGAACAAAGATAAAA+AGG + chr7_4:45034352-45034371 None:intergenic 20.0%
!!! ATTTTAGGTAGATAATATTC+TGG - chr7_4:45034846-45034865 Msa1156660:intron 20.0%
!! AGTGAAAATAAATTAGAATG+AGG + chr7_4:45034889-45034908 None:intergenic 20.0%
!! TTTCTATATATGCATATCAT+TGG - chr7_4:45034914-45034933 Msa1156660:intron 20.0%
!! AAAAATAAAACAGATCATAC+CGG + chr7_4:45034995-45035014 None:intergenic 20.0%
!! TATATTTCATCCAAAAGAAA+GGG - chr7_4:45035124-45035143 Msa1156660:intron 20.0%
!!! AATAAAATTTCCCTTTCTTT+TGG + chr7_4:45035137-45035156 None:intergenic 20.0%
!! TAGATTAATAAAGACAATTC+AGG + chr7_4:45035883-45035902 None:intergenic 20.0%
!!! AAATAGATTTAAGGTTTGAA+CGG + chr7_4:45035933-45035952 None:intergenic 20.0%
!! ATAAATGCTTATAAAGTTAC+AGG + chr7_4:45036268-45036287 None:intergenic 20.0%
!! TATTTAAAAACACAAATAGC+TGG + chr7_4:45036347-45036366 None:intergenic 20.0%
!! TCAAATTCAATTCATTACTT+GGG + chr7_4:45036497-45036516 None:intergenic 20.0%
!! ATCAAATTCAATTCATTACT+TGG + chr7_4:45036498-45036517 None:intergenic 20.0%
!!! AAGTTTGAAACTTAACAAAA+TGG - chr7_4:45036675-45036694 Msa1156660:intron 20.0%
!!! AGTTTGAAACTTAACAAAAT+GGG - chr7_4:45036676-45036695 Msa1156660:intron 20.0%
!! ATAAAATCACAACAACTTTA+TGG + chr7_4:45036728-45036747 None:intergenic 20.0%
!! TTTATCTACAAAATAAACTC+AGG + chr7_4:45037067-45037086 None:intergenic 20.0%
!!! TGAGTTTATTTTGTAGATAA+AGG - chr7_4:45037066-45037085 Msa1156660:intron 20.0%
!!! GAGTTTATTTTGTAGATAAA+GGG - chr7_4:45037067-45037086 Msa1156660:intron 20.0%
!!! AGATTAGATTTTAATGATTG+TGG - chr7_4:45037556-45037575 Msa1156660:five_prime_UTR 20.0%
! AAAGAATCTAATAGGGTTTA+TGG + chr7_4:45032705-45032724 None:intergenic 25.0%
! GAGAAAAGAAAGAATCTAAT+AGG + chr7_4:45032713-45032732 None:intergenic 25.0%
! AAAGAGAAAGAGAAAGAAAA+TGG + chr7_4:45032737-45032756 None:intergenic 25.0%
! TGAAGGAAAAAATTGAATAC+CGG + chr7_4:45033101-45033120 None:intergenic 25.0%
! AAAAATCACGAGAAAATTGA+AGG + chr7_4:45033118-45033137 None:intergenic 25.0%
! AAGCTGTTTATTATGCTTAA+TGG - chr7_4:45033325-45033344 Msa1156660:CDS 25.0%
! TGATCTTAGTACAAAAATAG+TGG - chr7_4:45033447-45033466 Msa1156660:intron 25.0%
! GAATTAATTGAAGTAATCAC+GGG - chr7_4:45033653-45033672 Msa1156660:intron 25.0%
! ACAAATGTATTATGTGATGA+AGG - chr7_4:45033863-45033882 Msa1156660:intron 25.0%
! TATTAAGAAAGTTGGAAACT+CGG - chr7_4:45033941-45033960 Msa1156660:intron 25.0%
!!! ACAAATTATTTTGATCCCAT+AGG + chr7_4:45034379-45034398 None:intergenic 25.0%
!! TTTTTATGCATGATGATCTT+AGG - chr7_4:45034715-45034734 Msa1156660:intron 25.0%
!! CTGTGTTGTAATCAATATTT+TGG - chr7_4:45035027-45035046 Msa1156660:intron 25.0%
!! TCATACAACTCTAAAAAGTA+AGG + chr7_4:45035055-45035074 None:intergenic 25.0%
! TTGGATGAAATATACTAATG+TGG + chr7_4:45035118-45035137 None:intergenic 25.0%
! GTATATTTCATCCAAAAGAA+AGG - chr7_4:45035123-45035142 Msa1156660:intron 25.0%
!!! ATTTTATTTCTTAAACAGCC+TGG - chr7_4:45035149-45035168 Msa1156660:intron 25.0%
!!! TTTTATTTCTTAAACAGCCT+GGG - chr7_4:45035150-45035169 Msa1156660:intron 25.0%
!! TATTATAGGTTTGGAATCAA+TGG - chr7_4:45035198-45035217 Msa1156660:intron 25.0%
! AAGCAATAATTTATTCAGCA+AGG + chr7_4:45035313-45035332 None:intergenic 25.0%
! GCTGAATAAATTATTGCTTT+CGG - chr7_4:45035314-45035333 Msa1156660:intron 25.0%
! CTGAATAAATTATTGCTTTC+GGG - chr7_4:45035315-45035334 Msa1156660:intron 25.0%
! TCATCCATGATATAAGAATT+TGG - chr7_4:45035347-45035366 Msa1156660:intron 25.0%
! CATCCATGATATAAGAATTT+GGG - chr7_4:45035348-45035367 Msa1156660:intron 25.0%
! ACCAATAAAACATATCAATC+TGG + chr7_4:45035374-45035393 None:intergenic 25.0%
!!! TATTGGTTTATATTTGAGAC+AGG - chr7_4:45035387-45035406 Msa1156660:CDS 25.0%
!! ATTGGTTTATATTTGAGACA+GGG - chr7_4:45035388-45035407 Msa1156660:CDS 25.0%
! CAAAAAACTGAAAATATGCA+AGG + chr7_4:45035687-45035706 None:intergenic 25.0%
!! TGCATATTTTCAGTTTTTTG+AGG - chr7_4:45035687-45035706 Msa1156660:intron 25.0%
! AATGGTTGTCTATTCAATTT+GGG - chr7_4:45035742-45035761 Msa1156660:intron 25.0%
! ATAGTTATGTTTCAGACATA+TGG - chr7_4:45035766-45035785 Msa1156660:intron 25.0%
! GCAAAGTCAAAATAGATTTA+AGG + chr7_4:45035942-45035961 None:intergenic 25.0%
!!! AATCTTTTCAAGATCTTTTG+CGG - chr7_4:45035985-45036004 Msa1156660:intron 25.0%
!!! ACTCATTTTTTCCTACAATT+AGG - chr7_4:45036640-45036659 Msa1156660:intron 25.0%
!!! ATTTTTTCCTACAATTAGGA+AGG - chr7_4:45036644-45036663 Msa1156660:intron 25.0%
!!! TTTTTTCCTACAATTAGGAA+GGG - chr7_4:45036645-45036664 Msa1156660:intron 25.0%
!! AAGTTGTTGTGATTTTATGA+AGG - chr7_4:45036730-45036749 Msa1156660:intron 25.0%
!! TTTTATGAAGGCTTTTTGTA+AGG - chr7_4:45036742-45036761 Msa1156660:intron 25.0%
! TTACAAGAAACAAGAAATAG+TGG - chr7_4:45036869-45036888 Msa1156660:intron 25.0%
!!! TAGAAGTTTTTGAAGATTGT+TGG - chr7_4:45037128-45037147 Msa1156660:intron 25.0%
! TGTTAGTTAAATGTTGAAGT+GGG + chr7_4:45037388-45037407 None:intergenic 25.0%
! ATGTTAGTTAAATGTTGAAG+TGG + chr7_4:45037389-45037408 None:intergenic 25.0%
! AGTTAAGATTTAAATCCTGT+TGG - chr7_4:45037463-45037482 Msa1156660:five_prime_UTR 25.0%
! TGGACATTAACGAAATATAT+AGG + chr7_4:45037586-45037605 None:intergenic 25.0%
! ATTTCGTTAATGTCCATTAA+TGG - chr7_4:45037590-45037609 Msa1156660:five_prime_UTR 25.0%
! TTTCGTTAATGTCCATTAAT+GGG - chr7_4:45037591-45037610 Msa1156660:five_prime_UTR 25.0%
AAACAAAGAAAACGCCTTAA+CGG - chr7_4:45032602-45032621 Msa1156660:three_prime_UTR 30.0%
! GATTATTCATTTTGCCGTTA+AGG + chr7_4:45032619-45032638 None:intergenic 30.0%
AATGTGAATTGAATCGAATG+CGG + chr7_4:45032839-45032858 None:intergenic 30.0%
AATTGGAAAATGGATGATAG+AGG - chr7_4:45033007-45033026 Msa1156660:three_prime_UTR 30.0%
TTGAAAGGAATAAACGTTGA+AGG + chr7_4:45033155-45033174 None:intergenic 30.0%
!! CGCAATTTTGAAAAGTTGAA+AGG + chr7_4:45033170-45033189 None:intergenic 30.0%
GAGTACTTTATTATGTGATG+AGG - chr7_4:45033355-45033374 Msa1156660:CDS 30.0%
TTGTAAATAAAGCAAGCTAG+TGG - chr7_4:45033475-45033494 Msa1156660:intron 30.0%
CTATATTCTGTGGTCATATT+TGG - chr7_4:45033540-45033559 Msa1156660:intron 30.0%
! TCATTTTCTCGAATTGTTAC+CGG + chr7_4:45033635-45033654 None:intergenic 30.0%
TTAACTCTCTATTTCCTTCT+CGG + chr7_4:45033784-45033803 None:intergenic 30.0%
AATGTATTATGTGATGAAGG+TGG - chr7_4:45033866-45033885 Msa1156660:intron 30.0%
!!! TTTTGATTTAACTCCATACC+AGG - chr7_4:45034085-45034104 Msa1156660:intron 30.0%
! TCTCTTTTCATCTTTGTACA+TGG - chr7_4:45034176-45034195 Msa1156660:intron 30.0%
GATGAAAGCAATTGAACATT+CGG + chr7_4:45034289-45034308 None:intergenic 30.0%
! TTGTTCATCTTATTTGCCTA+TGG - chr7_4:45034360-45034379 Msa1156660:CDS 30.0%
! TGTTCATCTTATTTGCCTAT+GGG - chr7_4:45034361-45034380 Msa1156660:intron 30.0%
! ATGCTGAATTTTCCATTTTC+AGG - chr7_4:45034444-45034463 Msa1156660:intron 30.0%
! TTTTAATAGAAGAGACTACC+TGG + chr7_4:45034534-45034553 None:intergenic 30.0%
ATGATCTTAGGAATCCTTAA+GGG - chr7_4:45034727-45034746 Msa1156660:intron 30.0%
ATCTACCTAAAATCTGTTGA+TGG + chr7_4:45034839-45034858 None:intergenic 30.0%
TATATATGCATATCATTGGC+AGG - chr7_4:45034918-45034937 Msa1156660:intron 30.0%
ATATATGCATATCATTGGCA+GGG - chr7_4:45034919-45034938 Msa1156660:intron 30.0%
TGATTACAACACAGAAAAGA+TGG + chr7_4:45035021-45035040 None:intergenic 30.0%
TGAAACAACAAAGACCATTT+GGG + chr7_4:45035241-45035260 None:intergenic 30.0%
ATGAAACAACAAAGACCATT+TGG + chr7_4:45035242-45035261 None:intergenic 30.0%
TTCATGCATGCTTAATTAGA+TGG - chr7_4:45035257-45035276 Msa1156660:intron 30.0%
! GCCAGATTGATATGTTTTAT+TGG - chr7_4:45035370-45035389 Msa1156660:CDS 30.0%
! TTGGTTTATATTTGAGACAG+GGG - chr7_4:45035389-45035408 Msa1156660:CDS 30.0%
!! TGTACTTTTATTTCACGTCA+TGG + chr7_4:45035475-45035494 None:intergenic 30.0%
AGAAAATCATGGAAGGAATT+GGG + chr7_4:45035521-45035540 None:intergenic 30.0%
TTTCAACAGAAAATCATGGA+AGG + chr7_4:45035528-45035547 None:intergenic 30.0%
! AAGAGGATACACCATATTTT+TGG + chr7_4:45035641-45035660 None:intergenic 30.0%
!!! CAGTTTTTTGAGGTTGAAAT+AGG - chr7_4:45035697-45035716 Msa1156660:intron 30.0%
!! CATGTTGTGTTTGTTATGAA+TGG - chr7_4:45035724-45035743 Msa1156660:intron 30.0%
GAATGGTTGTCTATTCAATT+TGG - chr7_4:45035741-45035760 Msa1156660:intron 30.0%
ATGGTTGTCTATTCAATTTG+GGG - chr7_4:45035743-45035762 Msa1156660:intron 30.0%
AAAGACAATTCAGGAAAACA+GGG + chr7_4:45035874-45035893 None:intergenic 30.0%
TAAAGACAATTCAGGAAAAC+AGG + chr7_4:45035875-45035894 None:intergenic 30.0%
CAGCATATATCATGTCTAAA+AGG - chr7_4:45036142-45036161 Msa1156660:intron 30.0%
TCATGTCTAAAAGGATACAT+AGG - chr7_4:45036151-45036170 Msa1156660:intron 30.0%
CATGTCTAAAAGGATACATA+GGG - chr7_4:45036152-45036171 Msa1156660:intron 30.0%
ATGTCTAAAAGGATACATAG+GGG - chr7_4:45036153-45036172 Msa1156660:intron 30.0%
ATGCTTATAAAGTTACAGGT+GGG + chr7_4:45036264-45036283 None:intergenic 30.0%
AATGCTTATAAAGTTACAGG+TGG + chr7_4:45036265-45036284 None:intergenic 30.0%
AATAGCTGGTAATATTTGTG+AGG + chr7_4:45036333-45036352 None:intergenic 30.0%
TTTCTCTTGGTTTATCTAAC+AGG - chr7_4:45036375-45036394 Msa1156660:intron 30.0%
GTTGTTGACAAGTCAAATTT+GGG + chr7_4:45036407-45036426 None:intergenic 30.0%
TATGTCACATCAGAAAGAAT+AGG + chr7_4:45036447-45036466 None:intergenic 30.0%
TTCAATTCATTACTTGGGAA+AGG + chr7_4:45036492-45036511 None:intergenic 30.0%
ACTTTCTTAAAATTCCTTGC+AGG - chr7_4:45036583-45036602 Msa1156660:intron 30.0%
TAAGCGAAAAAAGATGAAAG+AGG + chr7_4:45036782-45036801 None:intergenic 30.0%
! GTTTTCTGATCTCATTTGAT+TGG - chr7_4:45036804-45036823 Msa1156660:intron 30.0%
TATGCAATAGAGAAGATCAA+AGG + chr7_4:45036969-45036988 None:intergenic 30.0%
TAAGATTTAAATCCTGTTGG+AGG - chr7_4:45037466-45037485 Msa1156660:five_prime_UTR 30.0%
TGTCCATTAATGGGAAAATA+CGG - chr7_4:45037600-45037619 Msa1156660:five_prime_UTR 30.0%
! AATCCGTATTTTCCCATTAA+TGG + chr7_4:45037606-45037625 None:intergenic 30.0%
AATATGCAGTAAACGAACAA+GGG + chr7_4:45037677-45037696 None:intergenic 30.0%
AAATATGCAGTAAACGAACA+AGG + chr7_4:45037678-45037697 None:intergenic 30.0%
ACAGAACAAGATCGTAAAAT+TGG + chr7_4:45037812-45037831 None:intergenic 30.0%
TTCTCTTTCTCTTTCTTTCC+CGG - chr7_4:45032743-45032762 Msa1156660:three_prime_UTR 35.0%
TAGAAAGTGGAAGAAAGATC+TGG + chr7_4:45032793-45032812 None:intergenic 35.0%
GAGGAAAAAAGAGGAAGAAA+CGG + chr7_4:45032817-45032836 None:intergenic 35.0%
CATCAATCAAGACGAAGAAT+TGG - chr7_4:45032990-45033009 Msa1156660:three_prime_UTR 35.0%
CAAGACGAAGAATTGGAAAA+TGG - chr7_4:45032997-45033016 Msa1156660:three_prime_UTR 35.0%
ATTGAATACCGGAAGATGAA+TGG + chr7_4:45033090-45033109 None:intergenic 35.0%
AAAATCGACAAAATCACGAG+AGG + chr7_4:45033199-45033218 None:intergenic 35.0%
AGCATTCATGAAATGCGTAA+TGG - chr7_4:45033393-45033412 Msa1156660:intron 35.0%
AAGCAAGCTACTATATTCTG+TGG - chr7_4:45033530-45033549 Msa1156660:intron 35.0%
TAATTGAAGTAATCACGGGT+TGG - chr7_4:45033657-45033676 Msa1156660:intron 35.0%
ACACATGTCCTTGTCAAATA+CGG + chr7_4:45033713-45033732 None:intergenic 35.0%
TATTTGACAAGGACATGTGT+TGG - chr7_4:45033713-45033732 Msa1156660:intron 35.0%
! GTTCAGTTTCTTAAAGCACT+CGG + chr7_4:45033840-45033859 None:intergenic 35.0%
CCAACAAATATTACCTGGTA+TGG + chr7_4:45034101-45034120 None:intergenic 35.0%
CCATACCAGGTAATATTTGT+TGG - chr7_4:45034098-45034117 Msa1156660:intron 35.0%
TGATGCCAACAAATATTACC+TGG + chr7_4:45034106-45034125 None:intergenic 35.0%
TTTCACATGGTTGGGTTTAA+TGG - chr7_4:45034323-45034342 Msa1156660:CDS 35.0%
TCAGCATTGTGAATTTACTG+TGG + chr7_4:45034431-45034450 None:intergenic 35.0%
TCAGGGATAGAACTATCATA+TGG + chr7_4:45034508-45034527 None:intergenic 35.0%
CATGAAAAGCTCTATGTACA+TGG + chr7_4:45034631-45034650 None:intergenic 35.0%
GATGATCTTAGGAATCCTTA+AGG - chr7_4:45034726-45034745 Msa1156660:intron 35.0%
TTTCCTGAAGAAGAACTCAA+TGG - chr7_4:45034767-45034786 Msa1156660:intron 35.0%
! AGGATCCATCAACAGATTTT+AGG - chr7_4:45034831-45034850 Msa1156660:intron 35.0%
TATATGCATATCATTGGCAG+GGG - chr7_4:45034920-45034939 Msa1156660:intron 35.0%
!!! AGAATTTGCTGTTTTTTGCC+AGG - chr7_4:45034963-45034982 Msa1156660:intron 35.0%
!!! GTTTTTTGCCAGGAATTTTC+CGG - chr7_4:45034973-45034992 Msa1156660:intron 35.0%
! GTTACTTTGTTAACCTCTCT+AGG + chr7_4:45035096-45035115 None:intergenic 35.0%
ATGAAAATGTATACCTACCC+AGG + chr7_4:45035170-45035189 None:intergenic 35.0%
AAAGACCATTTGGGAAGAAA+TGG + chr7_4:45035232-45035251 None:intergenic 35.0%
! CTTAATTAGATGGTTGATGC+AGG - chr7_4:45035267-45035286 Msa1156660:intron 35.0%
TGGCCCAAATTCTTATATCA+TGG + chr7_4:45035354-45035373 None:intergenic 35.0%
!!! CAGGGGATTTTGAAATTGAT+TGG - chr7_4:45035406-45035425 Msa1156660:intron 35.0%
GAAAATCATGGAAGGAATTG+GGG + chr7_4:45035520-45035539 None:intergenic 35.0%
CAGAAAATCATGGAAGGAAT+TGG + chr7_4:45035522-45035541 None:intergenic 35.0%
! GGGTTTTCAACAGAAAATCA+TGG + chr7_4:45035532-45035551 None:intergenic 35.0%
CACAATGCTTAGACAAGTTT+GGG + chr7_4:45035552-45035571 None:intergenic 35.0%
GCGGGTAATTTCCAAAAATA+TGG - chr7_4:45035627-45035646 Msa1156660:intron 35.0%
TGAAAATATGCAAGGAAGCT+CGG + chr7_4:45035679-45035698 None:intergenic 35.0%
TGCTTATAAAGTTACAGGTG+GGG + chr7_4:45036263-45036282 None:intergenic 35.0%
TTGACAAGTCAAATTTGGGA+CGG + chr7_4:45036403-45036422 None:intergenic 35.0%
GGTTGTTGACAAGTCAAATT+TGG + chr7_4:45036408-45036427 None:intergenic 35.0%
AACAATAAAAGCTACCTGCA+AGG + chr7_4:45036600-45036619 None:intergenic 35.0%
ATGTCTGACAGAAAATGAGT+CGG - chr7_4:45036943-45036962 Msa1156660:intron 35.0%
TTGCATAACATTCAAGCTGA+TGG - chr7_4:45036982-45037001 Msa1156660:intron 35.0%
! GTACATCTTCTAGTTGTGTA+AGG + chr7_4:45037258-45037277 None:intergenic 35.0%
TCAAGTTAAAACTAGACTGG+CGG + chr7_4:45037322-45037341 None:intergenic 35.0%
! CCTTCAAGTTAAAACTAGAC+TGG + chr7_4:45037325-45037344 None:intergenic 35.0%
!!! CCAGTCTAGTTTTAACTTGA+AGG - chr7_4:45037322-45037341 Msa1156660:CDS 35.0%
TAACATTTGAGCAAAGACCA+AGG - chr7_4:45037403-45037422 Msa1156660:five_prime_UTR 35.0%
! AAATGTAGGTTTGCTTTGCT+TGG - chr7_4:45037525-45037544 Msa1156660:five_prime_UTR 35.0%
GGATTGCAGTATCATAATTC+AGG - chr7_4:45037621-45037640 Msa1156660:five_prime_UTR 35.0%
! TATACACGCTTCCTATCTTT+TGG - chr7_4:45037778-45037797 Msa1156660:five_prime_UTR 35.0%
TCTCTTTCTCTTTCTTTCCC+GGG - chr7_4:45032744-45032763 Msa1156660:three_prime_UTR 40.0%
! TTGGGATTGTAGATTTTCCC+GGG + chr7_4:45032764-45032783 None:intergenic 40.0%
! GTTGGGATTGTAGATTTTCC+CGG + chr7_4:45032765-45032784 None:intergenic 40.0%
! AGAAAGATCTGGAACAGGTT+GGG + chr7_4:45032782-45032801 None:intergenic 40.0%
! AAGAAAGATCTGGAACAGGT+TGG + chr7_4:45032783-45032802 None:intergenic 40.0%
AGGAAGAAACGGTTAGAAAG+TGG + chr7_4:45032806-45032825 None:intergenic 40.0%
TGGAAAATGGATGATAGAGG+TGG - chr7_4:45033010-45033029 Msa1156660:three_prime_UTR 40.0%
GCTGTTCGTAGAATTTCACA+AGG - chr7_4:45033043-45033062 Msa1156660:exon 40.0%
ATTTCACAAGGTCTTGATCG+TGG - chr7_4:45033055-45033074 Msa1156660:exon 40.0%
TCAATCATAATGCTTGCCAC+TGG + chr7_4:45033506-45033525 None:intergenic 40.0%
ACACTTGTCCTTGTCAGATA+CGG + chr7_4:45033685-45033704 None:intergenic 40.0%
! ACACCTTCCATTAGAAGTGT+CGG - chr7_4:45033745-45033764 Msa1156660:intron 40.0%
CAATGAGTGTTAGCTCATTG+TGG - chr7_4:45033804-45033823 Msa1156660:intron 40.0%
TGAGTTTGTGACAGGATCAA+CGG - chr7_4:45033998-45034017 Msa1156660:intron 40.0%
CACATACACAAGACAAACCT+CGG + chr7_4:45034034-45034053 None:intergenic 40.0%
CAGCACTTCAACACTCTTAA+AGG - chr7_4:45034138-45034157 Msa1156660:intron 40.0%
GCAATTGAACATTCGGTTCA+CGG + chr7_4:45034282-45034301 None:intergenic 40.0%
CATGACACCAATGTTTCACA+TGG - chr7_4:45034310-45034329 Msa1156660:CDS 40.0%
ACACCAATGTTTCACATGGT+TGG - chr7_4:45034314-45034333 Msa1156660:CDS 40.0%
CACCAATGTTTCACATGGTT+GGG - chr7_4:45034315-45034334 Msa1156660:CDS 40.0%
AACCCAACCATGTGAAACAT+TGG + chr7_4:45034320-45034339 None:intergenic 40.0%
GCAAGCATTCTTCCTGAAAA+TGG + chr7_4:45034459-45034478 None:intergenic 40.0%
! ACATGGCTTGAAGTGTTTGA+TGG + chr7_4:45034614-45034633 None:intergenic 40.0%
GATATATACGTTTGCACGTG+TGG + chr7_4:45034671-45034690 None:intergenic 40.0%
AGGAATCCTTAAGGGCTTTA+TGG - chr7_4:45034735-45034754 Msa1156660:intron 40.0%
AGCATTCCATAAAGCCCTTA+AGG + chr7_4:45034744-45034763 None:intergenic 40.0%
AAGCCATTGAGTTCTTCTTC+AGG + chr7_4:45034773-45034792 None:intergenic 40.0%
AGATCATACCGGAAAATTCC+TGG + chr7_4:45034984-45035003 None:intergenic 40.0%
ATTTCTTAAACAGCCTGGGT+AGG - chr7_4:45035154-45035173 Msa1156660:intron 40.0%
GTCATCCATTTCTTCCCAAA+TGG - chr7_4:45035224-45035243 Msa1156660:intron 40.0%
TTTATTTCACGTCATGGAGC+TGG + chr7_4:45035469-45035488 None:intergenic 40.0%
CCACAATGCTTAGACAAGTT+TGG + chr7_4:45035553-45035572 None:intergenic 40.0%
! CCAAACTTGTCTAAGCATTG+TGG - chr7_4:45035550-45035569 Msa1156660:CDS 40.0%
TAAATGCTGAGATTCCTCAG+CGG - chr7_4:45035608-45035627 Msa1156660:intron 40.0%
!! TTTTTGGAAATTACCCGCTG+AGG + chr7_4:45035625-45035644 None:intergenic 40.0%
GAAAATATGCAAGGAAGCTC+GGG + chr7_4:45035678-45035697 None:intergenic 40.0%
CAAATGCTAGATCTTGAAGC+AGG - chr7_4:45036083-45036102 Msa1156660:intron 40.0%
TCTAAAAGGATACATAGGGG+AGG - chr7_4:45036156-45036175 Msa1156660:intron 40.0%
! AGGGGAGGCATATATATGTA+CGG - chr7_4:45036171-45036190 Msa1156660:intron 40.0%
TTTGAAAGACCAGAACGTGT+TGG - chr7_4:45036212-45036231 Msa1156660:intron 40.0%
! TGGGGCTTATGTCATTTGAT+TGG + chr7_4:45036245-45036264 None:intergenic 40.0%
TTTCCTTGACAGTTAAGCCA+CGG - chr7_4:45036545-45036564 Msa1156660:intron 40.0%
CTGTTTCCCTTCCTAATTGT+AGG + chr7_4:45036654-45036673 None:intergenic 40.0%
CTACAATTAGGAAGGGAAAC+AGG - chr7_4:45036652-45036671 Msa1156660:intron 40.0%
! TCAAGCTGATGGACAATCAA+TGG - chr7_4:45036993-45037012 Msa1156660:intron 40.0%
CTAGTTGTGTAAGGTCTTCA+AGG + chr7_4:45037249-45037268 None:intergenic 40.0%
CGTGTGAGAAGTTTGTATGA+GGG + chr7_4:45037280-45037299 None:intergenic 40.0%
TCGTGTGAGAAGTTTGTATG+AGG + chr7_4:45037281-45037300 None:intergenic 40.0%
AAATGTTGAAGTGGGAAGAG+CGG + chr7_4:45037380-45037399 None:intergenic 40.0%
AGCCATGTGTGATATCATCA+AGG - chr7_4:45037428-45037447 Msa1156660:five_prime_UTR 40.0%
GCCATGTGTGATATCATCAA+GGG - chr7_4:45037429-45037448 Msa1156660:five_prime_UTR 40.0%
! ACCCTTGATGATATCACACA+TGG + chr7_4:45037433-45037452 None:intergenic 40.0%
TGCAGTATCATAATTCAGGC+AGG - chr7_4:45037625-45037644 Msa1156660:five_prime_UTR 40.0%
TCAGGCAGGTTTACTAAAGT+TGG - chr7_4:45037639-45037658 Msa1156660:five_prime_UTR 40.0%
TGGCGACAATACCAAAAGAT+AGG + chr7_4:45037792-45037811 None:intergenic 40.0%
! GTGGAAGAAAGATCTGGAAC+AGG + chr7_4:45032787-45032806 None:intergenic 45.0%
TCGAATGCGGAGGAAAAAAG+AGG + chr7_4:45032826-45032845 None:intergenic 45.0%
GTGAATTGAATCGAATGCGG+AGG + chr7_4:45032836-45032855 None:intergenic 45.0%
AACGCGTACCATTCATCTTC+CGG - chr7_4:45033079-45033098 Msa1156660:CDS 45.0%
TGTCAGTGCCGTATTTGACA+AGG - chr7_4:45033702-45033721 Msa1156660:intron 45.0%
! CTTCTAATGGAAGGTGTGTC+CGG + chr7_4:45033742-45033761 None:intergenic 45.0%
!! CACCTTCCATTAGAAGTGTC+GGG - chr7_4:45033746-45033765 Msa1156660:intron 45.0%
!! ACCTTCCATTAGAAGTGTCG+GGG - chr7_4:45033747-45033766 Msa1156660:intron 45.0%
AATAGCCCCGACACTTCTAA+TGG + chr7_4:45033755-45033774 None:intergenic 45.0%
GGGCTATTTAGTAACCGAGA+AGG - chr7_4:45033767-45033786 Msa1156660:CDS 45.0%
GTTACAGCTGAGTTTGTGAC+AGG - chr7_4:45033990-45034009 Msa1156660:intron 45.0%
TTCAGGAAGAATGCTTGCAG+AGG - chr7_4:45034461-45034480 Msa1156660:intron 45.0%
ATGGCTTGATTTCAGAGCAG+TGG - chr7_4:45034786-45034805 Msa1156660:intron 45.0%
TTCAGAGCAGTGGAAAGACA+TGG - chr7_4:45034796-45034815 Msa1156660:intron 45.0%
TCAGAGCAGTGGAAAGACAT+GGG - chr7_4:45034797-45034816 Msa1156660:intron 45.0%
! GGGTGGTGGTTACATATCAT+TGG - chr7_4:45034940-45034959 Msa1156660:intron 45.0%
AAATGCTGAGATTCCTCAGC+GGG - chr7_4:45035609-45035628 Msa1156660:intron 45.0%
GGGATAAGACTCGAACAAAG+AGG + chr7_4:45035658-45035677 None:intergenic 45.0%
GTTTGAACGGACAGTTCTTG+AGG + chr7_4:45035920-45035939 None:intergenic 45.0%
! TCAAGATCTTTTGCGGAAGC+AGG - chr7_4:45035992-45036011 Msa1156660:intron 45.0%
TAACACCAGCAACCGCAAAT+GGG + chr7_4:45036043-45036062 None:intergenic 45.0%
TTAACACCAGCAACCGCAAA+TGG + chr7_4:45036044-45036063 None:intergenic 45.0%
! GGGGAGGCATATATATGTAC+GGG - chr7_4:45036172-45036191 Msa1156660:intron 45.0%
! GGTTTAGAACCAACACGTTC+TGG + chr7_4:45036224-45036243 None:intergenic 45.0%
GAAGTTCTTTCTCCAGCTGA+CGG + chr7_4:45037225-45037244 None:intergenic 45.0%
ATATCACACATGGCTCACCT+TGG + chr7_4:45037423-45037442 None:intergenic 45.0%
GTGTGATATCATCAAGGGTC+TGG - chr7_4:45037434-45037453 Msa1156660:five_prime_UTR 45.0%
TGATATCATCAAGGGTCTGG+AGG - chr7_4:45037437-45037456 Msa1156660:five_prime_UTR 45.0%
!!! ATTTTTGTTTTTTTTTTTTA+AGG - chr7_4:45035825-45035844 Msa1156660:intron 5.0%
! TGGTATACATGAAGGAGCGC+AGG - chr7_4:45032528-45032547 Msa1156660:three_prime_UTR 50.0%
! CACTGCGATTTTCCAGTTCG+CGG - chr7_4:45032897-45032916 Msa1156660:three_prime_UTR 50.0%
CAAGCTAGTGGTGAATCCAG+TGG - chr7_4:45033487-45033506 Msa1156660:intron 50.0%
ACACTGACACACACACACAC+CGG - chr7_4:45033613-45033632 Msa1156660:intron 50.0%
! GGTTGGTACCGTATCTGACA+AGG - chr7_4:45033674-45033693 Msa1156660:intron 50.0%
CAAGGACATGTGTTGGACAC+CGG - chr7_4:45033720-45033739 Msa1156660:intron 50.0%
TTGTGACAGGATCAACGGCA+TGG - chr7_4:45034003-45034022 Msa1156660:intron 50.0%
ACAGGATCAACGGCATGGAT+TGG - chr7_4:45034008-45034027 Msa1156660:intron 50.0%
! TAGTTCTATCCCTGAGCACC+AGG - chr7_4:45034513-45034532 Msa1156660:intron 50.0%
AAGAGACTACCTGGTGCTCA+GGG + chr7_4:45034525-45034544 None:intergenic 50.0%
ATGCATATCATTGGCAGGGG+TGG - chr7_4:45034923-45034942 Msa1156660:intron 50.0%
CCTCTCTAGGCACTCAAATG+AGG + chr7_4:45035083-45035102 None:intergenic 50.0%
CCTCATTTGAGTGCCTAGAG+AGG - chr7_4:45035080-45035099 Msa1156660:intron 50.0%
! GATCTTTTGCGGAAGCAGGA+AGG - chr7_4:45035996-45036015 Msa1156660:intron 50.0%
!! AGTGTGGGAGTACCCATTTG+CGG - chr7_4:45036028-45036047 Msa1156660:intron 50.0%
TGTCCGTGGCTTAACTGTCA+AGG + chr7_4:45036551-45036570 None:intergenic 50.0%
TTCCATGCACGCGTCATACA+TGG - chr7_4:45037018-45037037 Msa1156660:intron 50.0%
ATCCATGTATGACGCGTGCA+TGG + chr7_4:45037023-45037042 None:intergenic 50.0%
CCAGCAATACATCCTCCAAC+AGG + chr7_4:45037481-45037500 None:intergenic 50.0%
CCTGTTGGAGGATGTATTGC+TGG - chr7_4:45037478-45037497 Msa1156660:five_prime_UTR 50.0%
! TTGCTGGCTGACATACAGTC+AGG - chr7_4:45037494-45037513 Msa1156660:five_prime_UTR 50.0%
! TGCTGGCTGACATACAGTCA+GGG - chr7_4:45037495-45037514 Msa1156660:five_prime_UTR 50.0%
! GTCAGGGGAGTCTGAAATGT+AGG - chr7_4:45037511-45037530 Msa1156660:five_prime_UTR 50.0%
! GATTTTCCAGTTCGCGGTCG+TGG - chr7_4:45032903-45032922 Msa1156660:three_prime_UTR 55.0%
GCCCCGACACTTCTAATGGA+AGG + chr7_4:45033751-45033770 None:intergenic 55.0%
GAAGAGACTACCTGGTGCTC+AGG + chr7_4:45034526-45034545 None:intergenic 55.0%
AGCAGTGGAAAGACATGGGC+TGG - chr7_4:45034801-45034820 Msa1156660:intron 55.0%
!! TGGAAAGACATGGGCTGGCA+AGG - chr7_4:45034806-45034825 Msa1156660:intron 55.0%
!! GGAAAGACATGGGCTGGCAA+GGG - chr7_4:45034807-45034826 Msa1156660:intron 55.0%
CATATCATTGGCAGGGGTGG+TGG - chr7_4:45034926-45034945 Msa1156660:intron 55.0%
GAGTACCCATTTGCGGTTGC+TGG - chr7_4:45036035-45036054 Msa1156660:intron 55.0%
GACAGTTAAGCCACGGACAC+TGG - chr7_4:45036552-45036571 Msa1156660:intron 55.0%
AGTTAAGCCACGGACACTGG+TGG - chr7_4:45036555-45036574 Msa1156660:intron 55.0%
GTTAAGCCACGGACACTGGT+GGG - chr7_4:45036556-45036575 Msa1156660:intron 55.0%
GAAATCTACACGCCGTCAGC+TGG - chr7_4:45037210-45037229 Msa1156660:intron 55.0%
GCTGGCTGACATACAGTCAG+GGG - chr7_4:45037496-45037515 Msa1156660:five_prime_UTR 55.0%
TTTCCAGTTCGCGGTCGTGG+TGG - chr7_4:45032906-45032925 Msa1156660:three_prime_UTR 60.0%
!! TCAACGGCATGGATTGGCCG+AGG - chr7_4:45034014-45034033 Msa1156660:intron 60.0%
!! AGACATGGGCTGGCAAGGGA+AGG - chr7_4:45034811-45034830 Msa1156660:intron 60.0%
TCACCACCACGACCGCGAAC+TGG + chr7_4:45032912-45032931 None:intergenic 65.0%
GTTGCTCCCACCAGTGTCCG+TGG + chr7_4:45036565-45036584 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 45032522 45037841 45032522 ID=Msa1156660;Name=Msa1156660
chr7_4 mRNA 45032522 45037841 45032522 ID=Msa1156660-mRNA-1;Parent=Msa1156660;Name=Msa1156660-mRNA-1;_AED=0.19;_eAED=0.19;_QI=494|1|1|1|1|1|9|538|266
chr7_4 exon 45032522 45033161 45032522 ID=Msa1156660-mRNA-1:exon:11697;Parent=Msa1156660-mRNA-1
chr7_4 exon 45033315 45033409 45033315 ID=Msa1156660-mRNA-1:exon:11696;Parent=Msa1156660-mRNA-1
chr7_4 exon 45033759 45033806 45033759 ID=Msa1156660-mRNA-1:exon:11695;Parent=Msa1156660-mRNA-1
chr7_4 exon 45034259 45034379 45034259 ID=Msa1156660-mRNA-1:exon:11694;Parent=Msa1156660-mRNA-1
chr7_4 exon 45035369 45035423 45035369 ID=Msa1156660-mRNA-1:exon:11693;Parent=Msa1156660-mRNA-1
chr7_4 exon 45035511 45035626 45035511 ID=Msa1156660-mRNA-1:exon:11692;Parent=Msa1156660-mRNA-1
chr7_4 exon 45035829 45035897 45035829 ID=Msa1156660-mRNA-1:exon:11691;Parent=Msa1156660-mRNA-1
chr7_4 exon 45036257 45036366 45036257 ID=Msa1156660-mRNA-1:exon:11690;Parent=Msa1156660-mRNA-1
chr7_4 exon 45037263 45037841 45037263 ID=Msa1156660-mRNA-1:exon:11689;Parent=Msa1156660-mRNA-1
chr7_4 five_prime_UTR 45037348 45037841 45037348 ID=Msa1156660-mRNA-1:five_prime_utr;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45037263 45037347 45037263 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45036257 45036366 45036257 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45035829 45035897 45035829 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45035511 45035626 45035511 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45035369 45035423 45035369 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45034259 45034379 45034259 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45033759 45033806 45033759 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45033315 45033409 45033315 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 CDS 45033060 45033161 45033060 ID=Msa1156660-mRNA-1:cds;Parent=Msa1156660-mRNA-1
chr7_4 three_prime_UTR 45032522 45033059 45032522 ID=Msa1156660-mRNA-1:three_prime_utr;Parent=Msa1156660-mRNA-1
Gene Sequence

>Msa1156660

ATGGATGATAGAGGTGGTTCTTTCGTCGCTGTTCGTAGAATTTCACAAGGTCTTGATCGTGGCAACGCGTACCATTCATCTTCCGCTGAGTTTGTGACAGGATCAACGGCATGGATTGGCCGAGGTTTGTCTTGTGTATGTGCACAGAGAAGAGAGAGCGATGCTCGACTCTCTTTTGATTTAACTCCATACCAGGAAGAATGCTTGCAGAGGCTTCAGAGTCGTATAGATGTTCCATATGATAGTTCTATCCCTGAGCACCAGGAATCCTTAAGGGCTTTATGGAATGCTGCATTTCCTGAAGAAGAACTCAATGGCTTGATTTCAGAGCAGTGGAAAGACATGGGCTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTACATATCATTGGAGAATTTGCTGTTTTTTGCCAGGAATTTTCCGAAATCTTTTCAAGATCTTTTGCGGAAGCAGGAAGGAGTTCGTTCAGTGTGGGAGTACCCATTTGCGGTTGCTGGTGTTAACATTACATTCATGCTTATTCAAATGCTAGATCTTGAAGCAGTTAAGCCACGGACACTGGTGGGAGCAACTTTCTTAAAATTCCTTGCAGAAAATGAGTCGGCCTTTGATCTTCTCTATTGCATAACATTCAAGCTGATGGACAATCAATGGCTTTCCATGCACGCGTCATACATGGATTTTAATACAGTGATGAAATCTACACGCCGTCAGCTGGAGAAAGAACTTCTCCTTGAAGACCTTACACAACTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG
Protein sequence

>Msa1156660

MDDRGGSFVAVRRISQGLDRGNAYHSSSAEFVTGSTAWIGRGLSCVCAQRRESDARLSFDLTPYQEECLQRLQSRIDVPYDSSIPEHQESLRALWNAAFPEEELNGLISEQWKDMGWQGKDPSTDFRGGGYISLENLLFFARNFPKSFQDLLRKQEGVRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENESAFDLLYCITFKLMDNQWLSMHASYMDFNTVMKSTRRQLEKELLLEDLTQLEDVPSYKLLTR*