Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157260 | XP_003624412.1 | 86.176 | 340 | 5 | 1 | 1 | 298 | 1 | 340 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157260 | sp|Q5JPI9|EFMT2_HUMAN | 50.820 | 122 | 56 | 3 | 121 | 239 | 82 | 202 | 3.12e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157260 | G7KV99 | 86.176 | 340 | 5 | 1 | 1 | 298 | 1 | 340 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1120320 | Msa1157260 | 0.801047 | 1.082370e-48 | -8.615850e-47 |
| Msa0884590 | Msa1157260 | -0.810372 | 1.190873e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157260 | MtrunA17_Chr7g0251381 | 86.176 | 340 | 5 | 1 | 1 | 298 | 1 | 340 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157260 | AT1G66680.1 | 58.939 | 358 | 87 | 3 | 1 | 298 | 1 | 358 | 3.21e-137 | 392 |
Find 108 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATGAGTTTAGGTCTT+TGG | 0.192323 | 7_4:+46179868 | Msa1157260:three_prime_UTR |
| CATGACTAACATATTGAAAT+AGG | 0.192349 | 7_4:-46179754 | None:intergenic |
| ACCCTTGTTTAGCCAATTCT+TGG | 0.227115 | 7_4:-46177109 | None:intergenic |
| GGTTGAAACTTTCCACTTCT+TGG | 0.231499 | 7_4:-46179667 | None:intergenic |
| TTTCAACTTGTCATGGATAA+AGG | 0.269862 | 7_4:+46179089 | Msa1157260:CDS |
| CCTAAACTCATGAAGGAAAA+AGG | 0.292796 | 7_4:-46179861 | None:intergenic |
| AAGTTTCCTCCCCTTTCATT+TGG | 0.297563 | 7_4:+46179993 | Msa1157260:three_prime_UTR |
| TCCTTGGCTACCTCAGGTTC+GGG | 0.333703 | 7_4:-46179710 | None:intergenic |
| CTCAGGTTCTCTGATTTAAC+TGG | 0.345032 | 7_4:+46177767 | Msa1157260:intron |
| AAAGGGACACTTGATGCTAT+TGG | 0.345795 | 7_4:+46179107 | Msa1157260:CDS |
| AGTTTCCTCCCCTTTCATTT+GGG | 0.345851 | 7_4:+46179994 | Msa1157260:three_prime_UTR |
| ATCCTTGGCTACCTCAGGTT+CGG | 0.346206 | 7_4:-46179711 | None:intergenic |
| TTCCGGCTGCAAACGAATTC+CGG | 0.350662 | 7_4:-46173892 | None:intergenic |
| AGACGCATGTGTATTACTTC+TGG | 0.353878 | 7_4:+46179922 | Msa1157260:three_prime_UTR |
| TTAACATCATCAACGTGATT+TGG | 0.356995 | 7_4:-46177005 | None:intergenic |
| CTTGTTCCAACTTTGTTTCA+AGG | 0.368887 | 7_4:-46179064 | None:intergenic |
| GAGTTTAGGTCTTTGGTGAA+TGG | 0.382761 | 7_4:+46179875 | Msa1157260:three_prime_UTR |
| CTTGACATTGGGACTGGAAA+TGG | 0.388367 | 7_4:+46177077 | Msa1157260:CDS |
| TGGTTTGCTTCTCCAAGAAT+TGG | 0.395304 | 7_4:+46177097 | Msa1157260:CDS |
| AAGGCTTTGGGCAAGGTTGA+TGG | 0.395865 | 7_4:-46177810 | None:intergenic |
| AGTTTAGGTCTTTGGTGAAT+GGG | 0.396722 | 7_4:+46179876 | Msa1157260:three_prime_UTR |
| ATGACTAACATATTGAAATA+GGG | 0.397158 | 7_4:-46179753 | None:intergenic |
| AATGTAGTAGTAAAGGGAAA+AGG | 0.403647 | 7_4:+46180049 | Msa1157260:three_prime_UTR |
| GTTTCAAGGCTGGTTGCTCC+TGG | 0.406301 | 7_4:+46179321 | Msa1157260:CDS |
| TAAACAAATGTAGTAGTAAA+GGG | 0.418838 | 7_4:+46180043 | Msa1157260:three_prime_UTR |
| TTCAACTTGTCATGGATAAA+GGG | 0.421552 | 7_4:+46179090 | Msa1157260:CDS |
| CATCACGGTTAGCAAGGCTT+TGG | 0.423854 | 7_4:-46177823 | None:intergenic |
| ATCACGGTTAGCAAGGCTTT+GGG | 0.424839 | 7_4:-46177822 | None:intergenic |
| ATAAACAAATGTAGTAGTAA+AGG | 0.434046 | 7_4:+46180042 | Msa1157260:three_prime_UTR |
| TCTTTCTCTTACCTCTTGAC+AGG | 0.438190 | 7_4:-46179146 | None:intergenic |
| AGTAATTACAAATTAACAAT+GGG | 0.442639 | 7_4:+46180124 | Msa1157260:three_prime_UTR |
| TCATCATCCTTGGCTACCTC+AGG | 0.447830 | 7_4:-46179716 | None:intergenic |
| AAATCACGTTGATGATGTTA+AGG | 0.448003 | 7_4:+46177007 | Msa1157260:CDS |
| GTTGGAATGTACTTGACATT+GGG | 0.464276 | 7_4:+46177066 | Msa1157260:CDS |
| TTGGGATTCTGTTTCAAGGC+TGG | 0.471964 | 7_4:+46179311 | Msa1157260:CDS |
| TACCTCTTGACAGGACCATC+AGG | 0.473156 | 7_4:-46179137 | None:intergenic |
| TGGTACTGATTATAGTGAAC+GGG | 0.478126 | 7_4:+46177787 | Msa1157260:CDS |
| ATGTAGTAGTAAAGGGAAAA+GGG | 0.480227 | 7_4:+46180050 | Msa1157260:three_prime_UTR |
| GGACCATGAGTCAGCGGCGA+TGG | 0.482287 | 7_4:-46173982 | None:intergenic |
| CTCCAAGAATTGGCTAAACA+AGG | 0.487355 | 7_4:+46177107 | Msa1157260:CDS |
| AGCTATTCACCCAAATGAAA+GGG | 0.489879 | 7_4:-46180003 | None:intergenic |
| CAAAGCCTTGCTAACCGTGA+TGG | 0.494626 | 7_4:+46177824 | Msa1157260:CDS |
| TGTATTGGGATTCTGTTTCA+AGG | 0.498037 | 7_4:+46179307 | Msa1157260:CDS |
| GAGCTTCAGCGGCGTCCGCA+TGG | 0.498625 | 7_4:-46174046 | None:intergenic |
| GTTCCATCGCCGCTGACTCA+TGG | 0.501137 | 7_4:+46173979 | Msa1157260:CDS |
| ACTACTTTGAACGCAGGAAA+GGG | 0.508146 | 7_4:-46173776 | None:intergenic |
| TATCCGACATTCATGTTTGG+TGG | 0.508388 | 7_4:+46179785 | Msa1157260:CDS |
| AGTGGCAACACGGGAGCCTA+CGG | 0.508556 | 7_4:-46179810 | None:intergenic |
| GGCCGGAATTCGTTTGCAGC+CGG | 0.509839 | 7_4:+46173890 | Msa1157260:CDS |
| TCTGCATGATTCATCATCCT+TGG | 0.514098 | 7_4:-46179726 | None:intergenic |
| CGAAACCACCCTCCGATGGC+CGG | 0.514310 | 7_4:+46173873 | Msa1157260:exon |
| AAAGCCTTGCTAACCGTGAT+GGG | 0.519409 | 7_4:+46177825 | Msa1157260:CDS |
| AGTTGGAATGTACTTGACAT+TGG | 0.519442 | 7_4:+46177065 | Msa1157260:CDS |
| ACAAGTGTTTCAACTTGTCA+TGG | 0.520761 | 7_4:+46179082 | Msa1157260:CDS |
| TGATGTCCTTGAAACAAAGT+TGG | 0.520838 | 7_4:+46179058 | Msa1157260:CDS |
| CAGCTATTCACCCAAATGAA+AGG | 0.520895 | 7_4:-46180004 | None:intergenic |
| CAGTAATTACAAATTAACAA+TGG | 0.528924 | 7_4:+46180123 | Msa1157260:three_prime_UTR |
| ACGTATCCGACATTCATGTT+TGG | 0.531317 | 7_4:+46179782 | Msa1157260:CDS |
| TGGTCCATCAAAAGCGAGTA+CGG | 0.535490 | 7_4:+46173999 | Msa1157260:CDS |
| TGATGGAAGTAGTTGCATCT+TGG | 0.538960 | 7_4:+46176943 | Msa1157260:CDS |
| TACTACTTTGAACGCAGGAA+AGG | 0.543131 | 7_4:-46173777 | None:intergenic |
| TGCAAACGAATTCCGGCCAT+CGG | 0.544835 | 7_4:-46173885 | None:intergenic |
| GGCGATGGAACGGTCGTCGT+CGG | 0.546266 | 7_4:-46173967 | None:intergenic |
| AATGTACTTGACATTGGGAC+TGG | 0.547470 | 7_4:+46177071 | Msa1157260:CDS |
| TTGTGCATTGACATTTCTCA+AGG | 0.550839 | 7_4:+46176975 | Msa1157260:CDS |
| TCAAGGCTGGTTGCTCCTGG+TGG | 0.552752 | 7_4:+46179324 | Msa1157260:CDS |
| GGTTAGCAAGGCTTTGGGCA+AGG | 0.554260 | 7_4:-46177817 | None:intergenic |
| AACGAATTCCGGCCATCGGA+GGG | 0.554785 | 7_4:-46173881 | None:intergenic |
| CCAAAGACCTAAACTCATGA+AGG | 0.556376 | 7_4:-46179868 | None:intergenic |
| TGGGGTGCAATTAGTAAAGC+CGG | 0.557291 | 7_4:+46173706 | None:intergenic |
| TGACTAACATATTGAAATAG+GGG | 0.572139 | 7_4:-46179752 | None:intergenic |
| AAATGCCACAGTGGCAACAC+GGG | 0.573969 | 7_4:-46179819 | None:intergenic |
| ATGAGTCAGCGGCGATGGAA+CGG | 0.575371 | 7_4:-46173977 | None:intergenic |
| ACCTGTAATCTGATGCGGCA+CGG | 0.580581 | 7_4:-46174085 | None:intergenic |
| TTCATGTTTGGTGGATCCGT+AGG | 0.581735 | 7_4:+46179794 | Msa1157260:CDS |
| GAAACCCATCACGGTTAGCA+AGG | 0.585736 | 7_4:-46177829 | None:intergenic |
| GGATGAGTTAGTCCAAGAAG+TGG | 0.588080 | 7_4:+46179655 | Msa1157260:CDS |
| AGTAGTTGCATCTTGGACAA+AGG | 0.588242 | 7_4:+46176950 | Msa1157260:CDS |
| CCCCGAACCTGAGGTAGCCA+AGG | 0.591508 | 7_4:+46179709 | Msa1157260:CDS |
| GCTATTGGATTGCATCCTGA+TGG | 0.592164 | 7_4:+46179122 | Msa1157260:CDS |
| AAACGAATTCCGGCCATCGG+AGG | 0.592821 | 7_4:-46173882 | None:intergenic |
| GATGATGTTAAGGCTGATGC+TGG | 0.596248 | 7_4:+46177017 | Msa1157260:CDS |
| CTGGTACTGATTATAGTGAA+CGG | 0.599561 | 7_4:+46177786 | Msa1157260:CDS |
| GTGGTTTCGTTACTATGCGG+TGG | 0.602073 | 7_4:-46173859 | None:intergenic |
| GTAACGAAACCACCCTCCGA+TGG | 0.609274 | 7_4:+46173869 | Msa1157260:exon |
| GAAATGCCACAGTGGCAACA+CGG | 0.613085 | 7_4:-46179820 | None:intergenic |
| CTTGGCTACCTCAGGTTCGG+GGG | 0.614779 | 7_4:-46179708 | None:intergenic |
| TCGCGCTTGTTGCGAGACGT+CGG | 0.621027 | 7_4:-46173919 | None:intergenic |
| ACTTTGAACGCAGGAAAGGG+TGG | 0.626766 | 7_4:-46173773 | None:intergenic |
| GACGTTAGAGAGAGCTTCAG+CGG | 0.629096 | 7_4:-46174057 | None:intergenic |
| TCCAAGAATTGGCTAAACAA+GGG | 0.634283 | 7_4:+46177108 | Msa1157260:CDS |
| ATCCTGATGGTCCTGTCAAG+AGG | 0.635234 | 7_4:+46179135 | Msa1157260:CDS |
| GAATTCCGGCCATCGGAGGG+TGG | 0.635739 | 7_4:-46173878 | None:intergenic |
| ACTAGTACTACTTTGAACGC+AGG | 0.636908 | 7_4:-46173782 | None:intergenic |
| AGGCTCCCGTGTTGCCACTG+TGG | 0.638681 | 7_4:+46179814 | Msa1157260:CDS |
| GATCCACCAAACATGAATGT+CGG | 0.646069 | 7_4:-46179788 | None:intergenic |
| CACATCATGTAACAGTACAA+AGG | 0.646819 | 7_4:+46179634 | Msa1157260:CDS |
| TGATGTTGGGAAACCCATCA+CGG | 0.647034 | 7_4:-46177838 | None:intergenic |
| TAGGTTCGGAGATAATGTGA+TGG | 0.650998 | 7_4:+46176926 | Msa1157260:intron |
| ATGGAACCTGTAATCTGATG+CGG | 0.661523 | 7_4:-46174090 | None:intergenic |
| GCTATTCACCCAAATGAAAG+GGG | 0.664637 | 7_4:-46180002 | None:intergenic |
| ATTCACCCAAATGAAAGGGG+AGG | 0.665174 | 7_4:-46179999 | None:intergenic |
| TTTGATGGACCATGAGTCAG+CGG | 0.681585 | 7_4:-46173988 | None:intergenic |
| GTACTTACAAGTATTCCACC+AGG | 0.693670 | 7_4:-46179339 | None:intergenic |
| CGATGACGATCAACGCCATG+CGG | 0.719168 | 7_4:+46174031 | Msa1157260:CDS |
| AGGGTGGTTTCGTTACTATG+CGG | 0.739620 | 7_4:-46173862 | None:intergenic |
| TGTAATCTGATGCGGCACGG+AGG | 0.752137 | 7_4:-46174082 | None:intergenic |
| AAAGGGCAGTTAGTTCAGTG+AGG | 0.757553 | 7_4:+46180067 | Msa1157260:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAAAATTAAAAGTGTT+TGG | + | chr7_4:46174531-46174550 | Msa1157260:intron | 10.0% |
| !!! | CATAAATACATTTATAATTT+TGG | - | chr7_4:46174695-46174714 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAATTGACT+AGG | + | chr7_4:46176118-46176137 | Msa1157260:intron | 10.0% |
| !! | TAGTAATAATTTAATAAAAG+GGG | - | chr7_4:46176404-46176423 | None:intergenic | 10.0% |
| !! | CTAGTAATAATTTAATAAAA+GGG | - | chr7_4:46176405-46176424 | None:intergenic | 10.0% |
| !! | TTAAAAATAATGTTAGATTT+AGG | + | chr7_4:46179403-46179422 | Msa1157260:intron | 10.0% |
| !! | ACAAATAAGAAAAATATTTA+CGG | - | chr7_4:46179966-46179985 | None:intergenic | 10.0% |
| !!! | AATTTAGAATTTACGTTTTA+GGG | + | chr7_4:46174404-46174423 | Msa1157260:intron | 15.0% |
| !! | TAACTATAAAATGACATAAA+AGG | + | chr7_4:46174579-46174598 | Msa1157260:intron | 15.0% |
| !!! | GAAAATATTACTGATTATAT+AGG | - | chr7_4:46174889-46174908 | None:intergenic | 15.0% |
| !! | AATTAAGAAAAGGTTAAAAT+TGG | + | chr7_4:46175104-46175123 | Msa1157260:intron | 15.0% |
| !! | AGTAATAATTTAATAAAAGG+GGG | - | chr7_4:46176403-46176422 | None:intergenic | 15.0% |
| !! | CCTAGTAATAATTTAATAAA+AGG | - | chr7_4:46176406-46176425 | None:intergenic | 15.0% |
| !!! | CCTTTTATTAAATTATTACT+AGG | + | chr7_4:46176403-46176422 | Msa1157260:intron | 15.0% |
| !! | ATAATGTTATGTTACAAAAA+AGG | + | chr7_4:46176479-46176498 | Msa1157260:intron | 15.0% |
| !! | TAATGTTATGTTACAAAAAA+GGG | + | chr7_4:46176480-46176499 | Msa1157260:intron | 15.0% |
| !! | GTATACTATAGATATAATTA+TGG | - | chr7_4:46176600-46176619 | None:intergenic | 15.0% |
| !!! | TTTCTTCATTTTATATATTC+AGG | - | chr7_4:46177532-46177551 | None:intergenic | 15.0% |
| !!! | TATAATATTATTGTTTTCCT+AGG | + | chr7_4:46177620-46177639 | Msa1157260:intron | 15.0% |
| !!! | ACGTTTATTTAACTATTTTA+AGG | + | chr7_4:46179031-46179050 | Msa1157260:intron | 15.0% |
| !! | TGACAATATAATATTAACTT+TGG | - | chr7_4:46179383-46179402 | None:intergenic | 15.0% |
| !! | AGTAATTACAAATTAACAAT+GGG | + | chr7_4:46180124-46180143 | Msa1157260:three_prime_UTR | 15.0% |
| !!! | ACCGTTATGTTTTTAATTTT+AGG | + | chr7_4:46174243-46174262 | Msa1157260:intron | 20.0% |
| !! | CCCTAAAATTAAAAACATAA+CGG | - | chr7_4:46174247-46174266 | None:intergenic | 20.0% |
| !!! | CCGTTATGTTTTTAATTTTA+GGG | + | chr7_4:46174244-46174263 | Msa1157260:intron | 20.0% |
| !!! | CGTTATGTTTTTAATTTTAG+GGG | + | chr7_4:46174245-46174264 | Msa1157260:intron | 20.0% |
| !!! | GAATTTAGAATTTACGTTTT+AGG | + | chr7_4:46174403-46174422 | Msa1157260:intron | 20.0% |
| !! | TATGTCATTACAAAGAAATA+GGG | + | chr7_4:46174951-46174970 | Msa1157260:intron | 20.0% |
| !! | GATTATTTAACATAAGCAAA+TGG | + | chr7_4:46176241-46176260 | Msa1157260:intron | 20.0% |
| !! | AAAACTAAGAAATCTTATGT+GGG | - | chr7_4:46176651-46176670 | None:intergenic | 20.0% |
| !! | TAAAACTAAGAAATCTTATG+TGG | - | chr7_4:46176652-46176671 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTCTATTTATGCA+GGG | - | chr7_4:46178475-46178494 | None:intergenic | 20.0% |
| !! | ATAAAACGTAAGTTTAGAAA+GGG | - | chr7_4:46178757-46178776 | None:intergenic | 20.0% |
| !! | TATAAAACGTAAGTTTAGAA+AGG | - | chr7_4:46178758-46178777 | None:intergenic | 20.0% |
| !!! | TCTAAACTTACGTTTTATAT+TGG | + | chr7_4:46178759-46178778 | Msa1157260:intron | 20.0% |
| !! | AAAAGTTAAAACAATGTCAA+AGG | - | chr7_4:46178845-46178864 | None:intergenic | 20.0% |
| !!! | TTATTTTCAGAATGATGTAT+TGG | + | chr7_4:46179292-46179311 | Msa1157260:intron | 20.0% |
| !!! | TATTTTCAGAATGATGTATT+GGG | + | chr7_4:46179293-46179312 | Msa1157260:intron | 20.0% |
| !! | TATAATATTAACTTTGGACA+AGG | - | chr7_4:46179377-46179396 | None:intergenic | 20.0% |
| !! | ATTTCTTCTGTAATGAATAA+TGG | - | chr7_4:46179499-46179518 | None:intergenic | 20.0% |
| !! | ATGACTAACATATTGAAATA+GGG | - | chr7_4:46179756-46179775 | None:intergenic | 20.0% |
| !! | ATAAACAAATGTAGTAGTAA+AGG | + | chr7_4:46180042-46180061 | Msa1157260:three_prime_UTR | 20.0% |
| !! | TAAACAAATGTAGTAGTAAA+GGG | + | chr7_4:46180043-46180062 | Msa1157260:three_prime_UTR | 20.0% |
| !! | CAGTAATTACAAATTAACAA+TGG | + | chr7_4:46180123-46180142 | Msa1157260:three_prime_UTR | 20.0% |
| !!! | TTTTAATTTTAGGGGAATTG+AGG | + | chr7_4:46174253-46174272 | Msa1157260:intron | 25.0% |
| ! | GGTTTATATTTGATGTTGAT+TGG | + | chr7_4:46174343-46174362 | Msa1157260:intron | 25.0% |
| !!! | AATTGTAGCTTTGTGAATTT+TGG | + | chr7_4:46174381-46174400 | Msa1157260:intron | 25.0% |
| ! | CTATGTCATTACAAAGAAAT+AGG | + | chr7_4:46174950-46174969 | Msa1157260:intron | 25.0% |
| ! | CTGTTCTATACTTAGTAATT+AGG | - | chr7_4:46174983-46175002 | None:intergenic | 25.0% |
| ! | GAAAATTTAAAAAGCCAACA+TGG | + | chr7_4:46175019-46175038 | Msa1157260:intron | 25.0% |
| !! | CTTACAAATTTTCATGAACA+TGG | + | chr7_4:46175640-46175659 | Msa1157260:intron | 25.0% |
| !! | TCACTGATCTTTATGATTTT+CGG | + | chr7_4:46175719-46175738 | Msa1157260:intron | 25.0% |
| !! | GCTTTTAATCTTCATTTACT+AGG | + | chr7_4:46175896-46175915 | Msa1157260:intron | 25.0% |
| !!! | ATTGTTGATAGCAGAAAAAT+AGG | - | chr7_4:46176069-46176088 | None:intergenic | 25.0% |
| !! | TATTTTTCTGCTATCAACAA+TGG | + | chr7_4:46176068-46176087 | Msa1157260:intron | 25.0% |
| ! | ATTTAACATAAGCAAATGGT+TGG | + | chr7_4:46176245-46176264 | Msa1157260:intron | 25.0% |
| !!! | TTGATGAATTTTTCAGAATC+AGG | + | chr7_4:46176308-46176327 | Msa1157260:intron | 25.0% |
| ! | CAACATAACATTATGTTGAA+AGG | - | chr7_4:46176431-46176450 | None:intergenic | 25.0% |
| ! | TTGAATTTACCTCAATTACA+GGG | - | chr7_4:46176734-46176753 | None:intergenic | 25.0% |
| ! | TTTGAATTTACCTCAATTAC+AGG | - | chr7_4:46176735-46176754 | None:intergenic | 25.0% |
| ! | TAATTGAGGTAAATTCAAAG+TGG | + | chr7_4:46176736-46176755 | Msa1157260:intron | 25.0% |
| ! | TGACAAATGAACATTTATTG+TGG | + | chr7_4:46176790-46176809 | Msa1157260:intron | 25.0% |
| !! | ATGATAAACTTTTGTCTAGT+TGG | + | chr7_4:46177048-46177067 | Msa1157260:CDS | 25.0% |
| ! | ATCGTATATTACCAACAATA+TGG | - | chr7_4:46177152-46177171 | None:intergenic | 25.0% |
| !! | TTGGACATAAATTTTTGTGT+AGG | - | chr7_4:46177221-46177240 | None:intergenic | 25.0% |
| ! | CATACCAAAAATTTGATGTT+GGG | - | chr7_4:46177854-46177873 | None:intergenic | 25.0% |
| ! | ACATACCAAAAATTTGATGT+TGG | - | chr7_4:46177855-46177874 | None:intergenic | 25.0% |
| !!! | ACCTTTTTGTTTTGTTTTTG+CGG | + | chr7_4:46178067-46178086 | Msa1157260:intron | 25.0% |
| !!! | TATATTTGGTGTAAAAGTCA+TGG | + | chr7_4:46178219-46178238 | Msa1157260:intron | 25.0% |
| ! | AAGATCAATTAAAAAGATCG+AGG | - | chr7_4:46178340-46178359 | None:intergenic | 25.0% |
| !!! | GATTTGTTTTCTATTTATGC+AGG | - | chr7_4:46178476-46178495 | None:intergenic | 25.0% |
| !! | AATGATATTCAAAAGGCATA+GGG | - | chr7_4:46178547-46178566 | None:intergenic | 25.0% |
| ! | TTATTGAGAATAGTAACTAC+TGG | + | chr7_4:46178575-46178594 | Msa1157260:intron | 25.0% |
| ! | AGAAAGAACTATCTTATTCA+TGG | + | chr7_4:46179162-46179181 | Msa1157260:intron | 25.0% |
| ! | TGGGAAATAAATGAATAACA+TGG | - | chr7_4:46179228-46179247 | None:intergenic | 25.0% |
| ! | TTATTCATTTATTTCCCACT+TGG | + | chr7_4:46179230-46179249 | Msa1157260:intron | 25.0% |
| ! | ACCACCTTACATAATAAAAA+GGG | - | chr7_4:46179614-46179633 | None:intergenic | 25.0% |
| ! | TGACTAACATATTGAAATAG+GGG | - | chr7_4:46179755-46179774 | None:intergenic | 25.0% |
| ! | CATGACTAACATATTGAAAT+AGG | - | chr7_4:46179757-46179776 | None:intergenic | 25.0% |
| ! | TTGTTGTTGTTAATAGATCG+TGG | + | chr7_4:46174189-46174208 | Msa1157260:intron | 30.0% |
| !! | TGGTTAGTTTAATAAGATCG+TGG | + | chr7_4:46175049-46175068 | Msa1157260:intron | 30.0% |
| !! | GGTTAGTTTAATAAGATCGT+GGG | + | chr7_4:46175050-46175069 | Msa1157260:intron | 30.0% |
| CTATAAGCTAAAAAGCTACT+TGG | + | chr7_4:46175150-46175169 | Msa1157260:intron | 30.0% | |
| TTGATAGAATGAGATGTGTT+TGG | - | chr7_4:46175222-46175241 | None:intergenic | 30.0% | |
| !! | AAGTTTTAGCATACAAACAC+CGG | - | chr7_4:46175328-46175347 | None:intergenic | 30.0% |
| ATCAATGATATCACTTTCCT+AGG | - | chr7_4:46175864-46175883 | None:intergenic | 30.0% | |
| TTGTACTAAATAGCATATCG+CGG | - | chr7_4:46175982-46176001 | None:intergenic | 30.0% | |
| TGATAGCAGAAAAATAGGTT+TGG | - | chr7_4:46176064-46176083 | None:intergenic | 30.0% | |
| ! | CAGAAACCATAATTGATAGT+GGG | + | chr7_4:46176154-46176173 | Msa1157260:intron | 30.0% |
| CTATTACCCACTATCAATTA+TGG | - | chr7_4:46176163-46176182 | None:intergenic | 30.0% | |
| !!! | TGGGTAATAGTTTGTTTTCT+AGG | + | chr7_4:46176173-46176192 | Msa1157260:intron | 30.0% |
| !! | TTTGTTTTCTAGGCATTTCT+AGG | + | chr7_4:46176183-46176202 | Msa1157260:intron | 30.0% |
| TCTATAGTATACTCAGTTTG+AGG | + | chr7_4:46176608-46176627 | Msa1157260:intron | 30.0% | |
| TTCATTTGTCATCTCTAACA+CGG | - | chr7_4:46176781-46176800 | None:intergenic | 30.0% | |
| TGAACATTTATTGTGGATGA+TGG | + | chr7_4:46176797-46176816 | Msa1157260:intron | 30.0% | |
| CTGTTATGTTTCATCATTGT+AGG | + | chr7_4:46176907-46176926 | Msa1157260:intron | 30.0% | |
| ATGTTTCATCATTGTAGGTT+CGG | + | chr7_4:46176912-46176931 | Msa1157260:intron | 30.0% | |
| TTAACATCATCAACGTGATT+TGG | - | chr7_4:46177008-46177027 | None:intergenic | 30.0% | |
| !! | AAATCACGTTGATGATGTTA+AGG | + | chr7_4:46177007-46177026 | Msa1157260:CDS | 30.0% |
| !! | TCACTTTTCATCCATATTGT+TGG | + | chr7_4:46177138-46177157 | Msa1157260:intron | 30.0% |
| ATATACTCTGATAACCAGAA+GGG | - | chr7_4:46177289-46177308 | None:intergenic | 30.0% | |
| TATATACTCTGATAACCAGA+AGG | - | chr7_4:46177290-46177309 | None:intergenic | 30.0% | |
| TGTATGCACGTATATCTATT+TGG | - | chr7_4:46177332-46177351 | None:intergenic | 30.0% | |
| ATTGAAAGATAACTTCACAG+TGG | + | chr7_4:46177360-46177379 | Msa1157260:intron | 30.0% | |
| AAGATCTAAAGACTGAACAA+GGG | - | chr7_4:46177656-46177675 | None:intergenic | 30.0% | |
| ! | CTTATTCTGAATACTGATTG+TGG | + | chr7_4:46177677-46177696 | Msa1157260:intron | 30.0% |
| ! | GTTTCCCAACATCAAATTTT+TGG | + | chr7_4:46177847-46177866 | Msa1157260:CDS | 30.0% |
| TTTCTTCTCATGTAGCTTAA+AGG | + | chr7_4:46177948-46177967 | Msa1157260:intron | 30.0% | |
| TGGCATGTTAGACATAATAT+TGG | + | chr7_4:46178003-46178022 | Msa1157260:intron | 30.0% | |
| GCAAAAACAAAACAAAAAGG+TGG | - | chr7_4:46178068-46178087 | None:intergenic | 30.0% | |
| TTAGGCATATCAGTTAACTT+GGG | + | chr7_4:46178176-46178195 | Msa1157260:intron | 30.0% | |
| ! | TGTTTTTCTTCTCCTTTGTT+TGG | + | chr7_4:46178301-46178320 | Msa1157260:intron | 30.0% |
| !! | GTTTTTCTTCTCCTTTGTTT+GGG | + | chr7_4:46178302-46178321 | Msa1157260:intron | 30.0% |
| AATTAAAAAGATCGAGGAGA+AGG | - | chr7_4:46178334-46178353 | None:intergenic | 30.0% | |
| ! | ATGATATTCAAAAGGCATAG+GGG | - | chr7_4:46178546-46178565 | None:intergenic | 30.0% |
| ! | GAATGATATTCAAAAGGCAT+AGG | - | chr7_4:46178548-46178567 | None:intergenic | 30.0% |
| GAACGAGAATGATATTCAAA+AGG | - | chr7_4:46178554-46178573 | None:intergenic | 30.0% | |
| CTAATATGTATCACAGTATC+AGG | - | chr7_4:46178664-46178683 | None:intergenic | 30.0% | |
| CTGATACTGTGATACATATT+AGG | + | chr7_4:46178662-46178681 | Msa1157260:intron | 30.0% | |
| CAGTAATATACTACAAAACG+GGG | - | chr7_4:46178899-46178918 | None:intergenic | 30.0% | |
| CCAGTAATATACTACAAAAC+GGG | - | chr7_4:46178900-46178919 | None:intergenic | 30.0% | |
| GCCAGTAATATACTACAAAA+CGG | - | chr7_4:46178901-46178920 | None:intergenic | 30.0% | |
| CATGTTAAGAAACAAGTCAA+AGG | - | chr7_4:46178956-46178975 | None:intergenic | 30.0% | |
| TTTCAACTTGTCATGGATAA+AGG | + | chr7_4:46179089-46179108 | Msa1157260:CDS | 30.0% | |
| TTCAACTTGTCATGGATAAA+GGG | + | chr7_4:46179090-46179109 | Msa1157260:CDS | 30.0% | |
| ACTGGCAGAAAATTAAAACA+CGG | - | chr7_4:46179430-46179449 | None:intergenic | 30.0% | |
| ! | TAATTTTCTGCCAGTTAGTT+TGG | + | chr7_4:46179435-46179454 | Msa1157260:intron | 30.0% |
| !! | AATTTTCTGCCAGTTAGTTT+GGG | + | chr7_4:46179436-46179455 | Msa1157260:intron | 30.0% |
| ! | AATTTTGCCTATTGCAAAGT+GGG | + | chr7_4:46179470-46179489 | Msa1157260:intron | 30.0% |
| CCTTACATAATAAAAAGGGA+AGG | - | chr7_4:46179610-46179629 | None:intergenic | 30.0% | |
| ! | CCTTCCCTTTTTATTATGTA+AGG | + | chr7_4:46179607-46179626 | Msa1157260:intron | 30.0% |
| ! | TCCCTTTTTATTATGTAAGG+TGG | + | chr7_4:46179610-46179629 | Msa1157260:intron | 30.0% |
| GACCACCTTACATAATAAAA+AGG | - | chr7_4:46179615-46179634 | None:intergenic | 30.0% | |
| AATGTAGTAGTAAAGGGAAA+AGG | + | chr7_4:46180049-46180068 | Msa1157260:three_prime_UTR | 30.0% | |
| ATGTAGTAGTAAAGGGAAAA+GGG | + | chr7_4:46180050-46180069 | Msa1157260:three_prime_UTR | 30.0% | |
| ATTACTGCAACAAAAAGAAC+TGG | - | chr7_4:46180110-46180129 | None:intergenic | 30.0% | |
| !! | TAGTTTTACACGTAACGTAC+CGG | - | chr7_4:46173728-46173747 | None:intergenic | 35.0% |
| CGCGAATTTCTTCAATTCAT+CGG | - | chr7_4:46174134-46174153 | None:intergenic | 35.0% | |
| ! | TGGATTCGTGATTTTGCTTA+GGG | + | chr7_4:46174209-46174228 | Msa1157260:intron | 35.0% |
| ! | TGTTGCGTTTTCGCAATTTA+TGG | + | chr7_4:46174310-46174329 | Msa1157260:intron | 35.0% |
| !! | TGATGTTGATTGGTAATGTG+TGG | + | chr7_4:46174353-46174372 | Msa1157260:intron | 35.0% |
| !!! | TTTACGTTTTAGGGTGTGTT+TGG | + | chr7_4:46174413-46174432 | Msa1157260:intron | 35.0% |
| ATAGCAATCTGATAGAAGTC+TGG | + | chr7_4:46174920-46174939 | Msa1157260:intron | 35.0% | |
| AAAGCCAACATGGTAAATCA+TGG | + | chr7_4:46175029-46175048 | Msa1157260:intron | 35.0% | |
| CTAACCATGATTTACCATGT+TGG | - | chr7_4:46175036-46175055 | None:intergenic | 35.0% | |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | - | chr7_4:46175264-46175283 | None:intergenic | 35.0% |
| ACAGCCTTAGGGTTTATAAT+TGG | + | chr7_4:46175299-46175318 | Msa1157260:intron | 35.0% | |
| CAGCCTTAGGGTTTATAATT+GGG | + | chr7_4:46175300-46175319 | Msa1157260:intron | 35.0% | |
| GTTCCCAATTATAAACCCTA+AGG | - | chr7_4:46175306-46175325 | None:intergenic | 35.0% | |
| TAGGGTTTATAATTGGGAAC+CGG | + | chr7_4:46175306-46175325 | Msa1157260:intron | 35.0% | |
| GGTGTTTGTATGCTAAAACT+TGG | + | chr7_4:46175327-46175346 | Msa1157260:intron | 35.0% | |
| !!! | GGTGCAGTTTTGTTAATTAG+TGG | + | chr7_4:46175917-46175936 | Msa1157260:intron | 35.0% |
| ! | AACAATGGACAACATTGACT+AGG | + | chr7_4:46176083-46176102 | Msa1157260:intron | 35.0% |
| CCACTATCAATTATGGTTTC+TGG | - | chr7_4:46176156-46176175 | None:intergenic | 35.0% | |
| CCAGAAACCATAATTGATAG+TGG | + | chr7_4:46176153-46176172 | Msa1157260:intron | 35.0% | |
| CAAAGCTTCAGAATGTACTT+TGG | + | chr7_4:46176509-46176528 | Msa1157260:intron | 35.0% | |
| TCAAACTAAGTCTCTGATCT+AGG | - | chr7_4:46176548-46176567 | None:intergenic | 35.0% | |
| ATAGTATACTCAGTTTGAGG+AGG | + | chr7_4:46176611-46176630 | Msa1157260:intron | 35.0% | |
| TCATTTGTCATCTCTAACAC+GGG | - | chr7_4:46176780-46176799 | None:intergenic | 35.0% | |
| ! | TTGTGCATTGACATTTCTCA+AGG | + | chr7_4:46176975-46176994 | Msa1157260:CDS | 35.0% |
| AGTTGGAATGTACTTGACAT+TGG | + | chr7_4:46177065-46177084 | Msa1157260:CDS | 35.0% | |
| GTTGGAATGTACTTGACATT+GGG | + | chr7_4:46177066-46177085 | Msa1157260:CDS | 35.0% | |
| TCCAAGAATTGGCTAAACAA+GGG | + | chr7_4:46177108-46177127 | Msa1157260:CDS | 35.0% | |
| TTATGTAGTTGTAAGAGACG+TGG | - | chr7_4:46177252-46177271 | None:intergenic | 35.0% | |
| AAATACATGAGTTTCCCTTC+TGG | + | chr7_4:46177272-46177291 | Msa1157260:intron | 35.0% | |
| TGCATATCAATGAAGCTATG+AGG | + | chr7_4:46177467-46177486 | Msa1157260:intron | 35.0% | |
| CAAGATCTAAAGACTGAACA+AGG | - | chr7_4:46177657-46177676 | None:intergenic | 35.0% | |
| CACCTTATTGAACAAACTCT+TGG | + | chr7_4:46177738-46177757 | Msa1157260:intron | 35.0% | |
| ! | TGCCAAGAGTTTGTTCAATA+AGG | - | chr7_4:46177743-46177762 | None:intergenic | 35.0% |
| !! | CTGGTACTGATTATAGTGAA+CGG | + | chr7_4:46177786-46177805 | Msa1157260:CDS | 35.0% |
| !! | TGGTACTGATTATAGTGAAC+GGG | + | chr7_4:46177787-46177806 | Msa1157260:CDS | 35.0% |
| !!! | GTGTTTTGTTTGTTAAAGCG+AGG | + | chr7_4:46178037-46178056 | Msa1157260:intron | 35.0% |
| GCCGCAAAAACAAAACAAAA+AGG | - | chr7_4:46178071-46178090 | None:intergenic | 35.0% | |
| ! | TCTAGATCACTTATGCCTTT+TGG | + | chr7_4:46178106-46178125 | Msa1157260:intron | 35.0% |
| ATTTGGACATTACCACCAAA+AGG | - | chr7_4:46178124-46178143 | None:intergenic | 35.0% | |
| CTTGTTAAGACACCTTATTG+TGG | - | chr7_4:46178151-46178170 | None:intergenic | 35.0% | |
| GTGTCTTAACAAGTCTTCTT+AGG | + | chr7_4:46178158-46178177 | Msa1157260:intron | 35.0% | |
| CTTAGGCATATCAGTTAACT+TGG | + | chr7_4:46178175-46178194 | Msa1157260:intron | 35.0% | |
| ! | AGTTAACTTGGGATAAGATC+AGG | + | chr7_4:46178187-46178206 | Msa1157260:intron | 35.0% |
| TCAGGCAATTGGCATATATT+TGG | + | chr7_4:46178205-46178224 | Msa1157260:intron | 35.0% | |
| TCATGGCCTTTCTTTCTTAT+GGG | + | chr7_4:46178236-46178255 | Msa1157260:intron | 35.0% | |
| AAGCTTCCCATAAGAAAGAA+AGG | - | chr7_4:46178245-46178264 | None:intergenic | 35.0% | |
| ATGCATTCACATCACATTTG+AGG | - | chr7_4:46178718-46178737 | None:intergenic | 35.0% | |
| ! | CCCGTTTTGTAGTATATTAC+TGG | + | chr7_4:46178897-46178916 | Msa1157260:intron | 35.0% |
| TGATGTCCTTGAAACAAAGT+TGG | + | chr7_4:46179058-46179077 | Msa1157260:CDS | 35.0% | |
| ! | CTTGTTCCAACTTTGTTTCA+AGG | - | chr7_4:46179067-46179086 | None:intergenic | 35.0% |
| ACAAGTGTTTCAACTTGTCA+TGG | + | chr7_4:46179082-46179101 | Msa1157260:CDS | 35.0% | |
| ! | TGGCTCTGTCATAATTCTAT+TGG | + | chr7_4:46179182-46179201 | Msa1157260:intron | 35.0% |
| TGGAGAACAAATTACCAAGT+GGG | - | chr7_4:46179247-46179266 | None:intergenic | 35.0% | |
| ATGGAGAACAAATTACCAAG+TGG | - | chr7_4:46179248-46179267 | None:intergenic | 35.0% | |
| TGTATTGGGATTCTGTTTCA+AGG | + | chr7_4:46179307-46179326 | Msa1157260:CDS | 35.0% | |
| ! | GAATTTTGCCTATTGCAAAG+TGG | + | chr7_4:46179469-46179488 | Msa1157260:intron | 35.0% |
| ATAAAAAGGGAAGGTCAGAA+AGG | - | chr7_4:46179601-46179620 | None:intergenic | 35.0% | |
| CACATCATGTAACAGTACAA+AGG | + | chr7_4:46179634-46179653 | Msa1157260:CDS | 35.0% | |
| CCTAAACTCATGAAGGAAAA+AGG | - | chr7_4:46179864-46179883 | None:intergenic | 35.0% | |
| ! | CCTTTTTCCTTCATGAGTTT+AGG | + | chr7_4:46179861-46179880 | Msa1157260:three_prime_UTR | 35.0% |
| AGTTTAGGTCTTTGGTGAAT+GGG | + | chr7_4:46179876-46179895 | Msa1157260:three_prime_UTR | 35.0% | |
| AGCTATTCACCCAAATGAAA+GGG | - | chr7_4:46180006-46180025 | None:intergenic | 35.0% | |
| ACTACTTTGAACGCAGGAAA+GGG | - | chr7_4:46173779-46173798 | None:intergenic | 40.0% | |
| TACTACTTTGAACGCAGGAA+AGG | - | chr7_4:46173780-46173799 | None:intergenic | 40.0% | |
| ACTAGTACTACTTTGAACGC+AGG | - | chr7_4:46173785-46173804 | None:intergenic | 40.0% | |
| ATGGAACCTGTAATCTGATG+CGG | - | chr7_4:46174093-46174112 | None:intergenic | 40.0% | |
| ! | GTGGATTCGTGATTTTGCTT+AGG | + | chr7_4:46174208-46174227 | Msa1157260:intron | 40.0% |
| ! | TGCGTTTTCGCAATTTATGG+CGG | + | chr7_4:46174313-46174332 | Msa1157260:intron | 40.0% |
| TTCGCAATTTATGGCGGTTA+AGG | + | chr7_4:46174319-46174338 | Msa1157260:intron | 40.0% | |
| TGTTACCAAACACAGCCTTA+GGG | + | chr7_4:46175288-46175307 | Msa1157260:intron | 40.0% | |
| ATAAACCCTAAGGCTGTGTT+TGG | - | chr7_4:46175296-46175315 | None:intergenic | 40.0% | |
| GTCAATGTGATCACATGTGT+TGG | - | chr7_4:46175400-46175419 | None:intergenic | 40.0% | |
| TTTCATGAACATGGTCATGC+TGG | + | chr7_4:46175649-46175668 | Msa1157260:intron | 40.0% | |
| GTAATCTGCAATTCAGACCT+AGG | + | chr7_4:46175844-46175863 | Msa1157260:intron | 40.0% | |
| !! | TGTTAAAGTGCCGACTTTAG+TGG | + | chr7_4:46176007-46176026 | Msa1157260:intron | 40.0% |
| ! | TGCTATAGTGCCACTAAAGT+CGG | - | chr7_4:46176020-46176039 | None:intergenic | 40.0% |
| AGTACGGAATACAACAAGCT+AGG | - | chr7_4:46176359-46176378 | None:intergenic | 40.0% | |
| !! | AAAGGGGGAGTATCTTTGTT+GGG | - | chr7_4:46176388-46176407 | None:intergenic | 40.0% |
| !! | AAAAGGGGGAGTATCTTTGT+TGG | - | chr7_4:46176389-46176408 | None:intergenic | 40.0% |
| GAGGTAAATTCAAAGTGGTG+TGG | + | chr7_4:46176741-46176760 | Msa1157260:intron | 40.0% | |
| AACAATTTCCCACAATGCTG+AGG | - | chr7_4:46176830-46176849 | None:intergenic | 40.0% | |
| TCAGCATTGTGGGAAATTGT+TGG | + | chr7_4:46176829-46176848 | Msa1157260:intron | 40.0% | |
| TAGGTTCGGAGATAATGTGA+TGG | + | chr7_4:46176926-46176945 | Msa1157260:intron | 40.0% | |
| TGATGGAAGTAGTTGCATCT+TGG | + | chr7_4:46176943-46176962 | Msa1157260:CDS | 40.0% | |
| AGTAGTTGCATCTTGGACAA+AGG | + | chr7_4:46176950-46176969 | Msa1157260:CDS | 40.0% | |
| AATGTACTTGACATTGGGAC+TGG | + | chr7_4:46177071-46177090 | Msa1157260:CDS | 40.0% | |
| !! | TGGTTTGCTTCTCCAAGAAT+TGG | + | chr7_4:46177097-46177116 | Msa1157260:CDS | 40.0% |
| CTCCAAGAATTGGCTAAACA+AGG | + | chr7_4:46177107-46177126 | Msa1157260:CDS | 40.0% | |
| ! | ACCCTTGTTTAGCCAATTCT+TGG | - | chr7_4:46177112-46177131 | None:intergenic | 40.0% |
| GAATTGGCTAAACAAGGGTA+TGG | + | chr7_4:46177113-46177132 | Msa1157260:intron | 40.0% | |
| AAGAGACGTGGAGATAATGT+TGG | - | chr7_4:46177240-46177259 | None:intergenic | 40.0% | |
| AGGGAGTTAGCATTAGCATA+TGG | + | chr7_4:46177441-46177460 | Msa1157260:intron | 40.0% | |
| CTCAGGTTCTCTGATTTAAC+TGG | + | chr7_4:46177767-46177786 | Msa1157260:intron | 40.0% | |
| TCATGTAGCTTAAAGGCAGA+AGG | + | chr7_4:46177955-46177974 | Msa1157260:intron | 40.0% | |
| ACTAAACAAGCTCAGATACG+GGG | - | chr7_4:46177984-46178003 | None:intergenic | 40.0% | |
| CACTAAACAAGCTCAGATAC+GGG | - | chr7_4:46177985-46178004 | None:intergenic | 40.0% | |
| CCACTAAACAAGCTCAGATA+CGG | - | chr7_4:46177986-46178005 | None:intergenic | 40.0% | |
| ! | AGATCACTTATGCCTTTTGG+TGG | + | chr7_4:46178109-46178128 | Msa1157260:intron | 40.0% |
| GTCCAAATTGTGCCACAATA+AGG | + | chr7_4:46178136-46178155 | Msa1157260:intron | 40.0% | |
| CACCTTATTGTGGCACAATT+TGG | - | chr7_4:46178141-46178160 | None:intergenic | 40.0% | |
| TTGGGATAAGATCAGGCAAT+TGG | + | chr7_4:46178194-46178213 | Msa1157260:intron | 40.0% | |
| GTCATGGCCTTTCTTTCTTA+TGG | + | chr7_4:46178235-46178254 | Msa1157260:intron | 40.0% | |
| ! | TTTCTTCTCCTTTGTTTGGG+AGG | + | chr7_4:46178305-46178324 | Msa1157260:intron | 40.0% |
| ! | TTCTTCTCCTTTGTTTGGGA+GGG | + | chr7_4:46178306-46178325 | Msa1157260:intron | 40.0% |
| ! | TATTCAAAAGGCATAGGGGT+TGG | - | chr7_4:46178542-46178561 | None:intergenic | 40.0% |
| TAACTATGTCACCTGCTTCA+TGG | + | chr7_4:46178610-46178629 | Msa1157260:intron | 40.0% | |
| AACTATGTCACCTGCTTCAT+GGG | + | chr7_4:46178611-46178630 | Msa1157260:intron | 40.0% | |
| ! | TTCACATCACATTTGAGGCA+AGG | - | chr7_4:46178713-46178732 | None:intergenic | 40.0% |
| ACTACAAAACGGGGAACAAA+AGG | - | chr7_4:46178890-46178909 | None:intergenic | 40.0% | |
| AAAGGGACACTTGATGCTAT+TGG | + | chr7_4:46179107-46179126 | Msa1157260:CDS | 40.0% | |
| TCTTTCTCTTACCTCTTGAC+AGG | - | chr7_4:46179149-46179168 | None:intergenic | 40.0% | |
| TTCTCCATGTAATCTTCTGC+TGG | + | chr7_4:46179260-46179279 | Msa1157260:intron | 40.0% | |
| CAAACCAGCAGAAGATTACA+TGG | - | chr7_4:46179267-46179286 | None:intergenic | 40.0% | |
| GTACTTACAAGTATTCCACC+AGG | - | chr7_4:46179342-46179361 | None:intergenic | 40.0% | |
| TGTCATGAACACAGCAACAT+GGG | - | chr7_4:46179546-46179565 | None:intergenic | 40.0% | |
| ATGTCATGAACACAGCAACA+TGG | - | chr7_4:46179547-46179566 | None:intergenic | 40.0% | |
| GGTTGAAACTTTCCACTTCT+TGG | - | chr7_4:46179670-46179689 | None:intergenic | 40.0% | |
| !!! | GGGAAGTAGCACTTTTTCTT+TGG | - | chr7_4:46179691-46179710 | None:intergenic | 40.0% |
| TCTGCATGATTCATCATCCT+TGG | - | chr7_4:46179729-46179748 | None:intergenic | 40.0% | |
| ACGTATCCGACATTCATGTT+TGG | + | chr7_4:46179782-46179801 | Msa1157260:CDS | 40.0% | |
| TATCCGACATTCATGTTTGG+TGG | + | chr7_4:46179785-46179804 | Msa1157260:CDS | 40.0% | |
| GATCCACCAAACATGAATGT+CGG | - | chr7_4:46179791-46179810 | None:intergenic | 40.0% | |
| ! | TTTTCGAAGAAATGCCACAG+TGG | - | chr7_4:46179831-46179850 | None:intergenic | 40.0% |
| ACTCATGAAGGAAAAAGGAC+AGG | - | chr7_4:46179859-46179878 | None:intergenic | 40.0% | |
| CCAAAGACCTAAACTCATGA+AGG | - | chr7_4:46179871-46179890 | None:intergenic | 40.0% | |
| CCTTCATGAGTTTAGGTCTT+TGG | + | chr7_4:46179868-46179887 | Msa1157260:three_prime_UTR | 40.0% | |
| GAGTTTAGGTCTTTGGTGAA+TGG | + | chr7_4:46179875-46179894 | Msa1157260:three_prime_UTR | 40.0% | |
| AGACGCATGTGTATTACTTC+TGG | + | chr7_4:46179922-46179941 | Msa1157260:three_prime_UTR | 40.0% | |
| AAGTTTCCTCCCCTTTCATT+TGG | + | chr7_4:46179993-46180012 | Msa1157260:three_prime_UTR | 40.0% | |
| AGTTTCCTCCCCTTTCATTT+GGG | + | chr7_4:46179994-46180013 | Msa1157260:three_prime_UTR | 40.0% | |
| GCTATTCACCCAAATGAAAG+GGG | - | chr7_4:46180005-46180024 | None:intergenic | 40.0% | |
| CAGCTATTCACCCAAATGAA+AGG | - | chr7_4:46180007-46180026 | None:intergenic | 40.0% | |
| AGGGTGGTTTCGTTACTATG+CGG | - | chr7_4:46173865-46173884 | None:intergenic | 45.0% | |
| ! | TTTGATGGACCATGAGTCAG+CGG | - | chr7_4:46173991-46174010 | None:intergenic | 45.0% |
| TGGTCCATCAAAAGCGAGTA+CGG | + | chr7_4:46173999-46174018 | Msa1157260:CDS | 45.0% | |
| CTTCAATTCATCGGAGAGAG+AGG | - | chr7_4:46174125-46174144 | None:intergenic | 45.0% | |
| GCAATTTATGGCGGTTAAGG+TGG | + | chr7_4:46174322-46174341 | Msa1157260:intron | 45.0% | |
| GTGTTACCAAACACAGCCTT+AGG | + | chr7_4:46175287-46175306 | Msa1157260:intron | 45.0% | |
| CAAGGATGAATCTGATGCTG+AGG | + | chr7_4:46175561-46175580 | Msa1157260:intron | 45.0% | |
| TGAGGCAGTTTCATCAATGC+TGG | + | chr7_4:46175579-46175598 | Msa1157260:intron | 45.0% | |
| GAGGCAGTTTCATCAATGCT+GGG | + | chr7_4:46175580-46175599 | Msa1157260:intron | 45.0% | |
| TGCTGGGATTTCAGAGTTAC+TGG | + | chr7_4:46175596-46175615 | Msa1157260:intron | 45.0% | |
| GCTGGGATTTCAGAGTTACT+GGG | + | chr7_4:46175597-46175616 | Msa1157260:intron | 45.0% | |
| ATGGTCATGCTGGTGAAGTT+TGG | + | chr7_4:46175659-46175678 | Msa1157260:intron | 45.0% | |
| TTAGTGGCGCTATTGCATAG+TGG | + | chr7_4:46175933-46175952 | Msa1157260:intron | 45.0% | |
| AGCATATCGCGGAACAATAG+AGG | - | chr7_4:46175971-46175990 | None:intergenic | 45.0% | |
| ACTATAGCACTGTTGCGTAG+CGG | + | chr7_4:46176031-46176050 | Msa1157260:intron | 45.0% | |
| CTTTGTTGGGGAAGTGAGTA+CGG | - | chr7_4:46176375-46176394 | None:intergenic | 45.0% | |
| !! | AAGGGGGAGTATCTTTGTTG+GGG | - | chr7_4:46176387-46176406 | None:intergenic | 45.0% |
| TCTCTGATCTAGGCAAAGCA+AGG | - | chr7_4:46176538-46176557 | None:intergenic | 45.0% | |
| TTGAGGAGGATGTGAACTTC+AGG | + | chr7_4:46176625-46176644 | Msa1157260:intron | 45.0% | |
| AGCGTCAATCCCTGTAATTG+AGG | + | chr7_4:46176722-46176741 | Msa1157260:intron | 45.0% | |
| GTGATGAACCTCAGCATTGT+GGG | + | chr7_4:46176819-46176838 | Msa1157260:intron | 45.0% | |
| GATGATGTTAAGGCTGATGC+TGG | + | chr7_4:46177017-46177036 | Msa1157260:CDS | 45.0% | |
| CTTGACATTGGGACTGGAAA+TGG | + | chr7_4:46177077-46177096 | Msa1157260:CDS | 45.0% | |
| ACAAGGGCAGTTTCATTCCT+AGG | - | chr7_4:46177640-46177659 | None:intergenic | 45.0% | |
| ATCACGGTTAGCAAGGCTTT+GGG | - | chr7_4:46177825-46177844 | None:intergenic | 45.0% | |
| AAAGCCTTGCTAACCGTGAT+GGG | + | chr7_4:46177825-46177844 | Msa1157260:CDS | 45.0% | |
| TGATGTTGGGAAACCCATCA+CGG | - | chr7_4:46177841-46177860 | None:intergenic | 45.0% | |
| TTTCAGAGTCTCTGTGTGTG+TGG | + | chr7_4:46177880-46177899 | Msa1157260:intron | 45.0% | |
| ! | CCGTATCTGAGCTTGTTTAG+TGG | + | chr7_4:46177983-46178002 | Msa1157260:intron | 45.0% |
| ! | GCAAGGTTCATTTTGAGCCT+GGG | - | chr7_4:46178696-46178715 | None:intergenic | 45.0% |
| GCTATTGGATTGCATCCTGA+TGG | + | chr7_4:46179122-46179141 | Msa1157260:CDS | 45.0% | |
| TTGGGATTCTGTTTCAAGGC+TGG | + | chr7_4:46179311-46179330 | Msa1157260:CDS | 45.0% | |
| ATGGACTCCCACTTTGCAAT+AGG | - | chr7_4:46179480-46179499 | None:intergenic | 45.0% | |
| TGAACACAGCAACATGGGAA+AGG | - | chr7_4:46179541-46179560 | None:intergenic | 45.0% | |
| GGATGAGTTAGTCCAAGAAG+TGG | + | chr7_4:46179655-46179674 | Msa1157260:CDS | 45.0% | |
| ! | TTCATGTTTGGTGGATCCGT+AGG | + | chr7_4:46179794-46179813 | Msa1157260:CDS | 45.0% |
| ATTCACCCAAATGAAAGGGG+AGG | - | chr7_4:46180002-46180021 | None:intergenic | 45.0% | |
| AAAGGGCAGTTAGTTCAGTG+AGG | + | chr7_4:46180067-46180086 | Msa1157260:three_prime_UTR | 45.0% | |
| !! | AATAAAATAAAATTAAGAAA+AGG | + | chr7_4:46175094-46175113 | Msa1157260:intron | 5.0% |
| !!! | TGAATTTTTTTAATTATATA+AGG | + | chr7_4:46177421-46177440 | Msa1157260:intron | 5.0% |
| !!! | GAATTTTTTTAATTATATAA+GGG | + | chr7_4:46177422-46177441 | Msa1157260:intron | 5.0% |
| !! | ATAATATTATATATTTATGA+AGG | - | chr7_4:46177611-46177630 | None:intergenic | 5.0% |
| ACTTTGAACGCAGGAAAGGG+TGG | - | chr7_4:46173776-46173795 | None:intergenic | 50.0% | |
| GTGGTTTCGTTACTATGCGG+TGG | - | chr7_4:46173862-46173881 | None:intergenic | 50.0% | |
| TGCAAACGAATTCCGGCCAT+CGG | - | chr7_4:46173888-46173907 | None:intergenic | 50.0% | |
| TTCCGGCTGCAAACGAATTC+CGG | - | chr7_4:46173895-46173914 | None:intergenic | 50.0% | |
| GACGTTAGAGAGAGCTTCAG+CGG | - | chr7_4:46174060-46174079 | None:intergenic | 50.0% | |
| ACCTGTAATCTGATGCGGCA+CGG | - | chr7_4:46174088-46174107 | None:intergenic | 50.0% | |
| GAGAGAGAGGTGATGAGGAA+TGG | - | chr7_4:46174112-46174131 | None:intergenic | 50.0% | |
| GCTAGCTGATAGCTGATAGC+TGG | + | chr7_4:46174452-46174471 | Msa1157260:intron | 50.0% | |
| GTCAGTGTTCGTGTCATGTC+CGG | + | chr7_4:46175455-46175474 | Msa1157260:intron | 50.0% | |
| CAATCCGAGCCTATGAAGCA+CGG | - | chr7_4:46175484-46175503 | None:intergenic | 50.0% | |
| ! | GTGTGTGTGCAGTTCTGACA+AGG | + | chr7_4:46175543-46175562 | Msa1157260:intron | 50.0% |
| GGTGATGAACCTCAGCATTG+TGG | + | chr7_4:46176818-46176837 | Msa1157260:intron | 50.0% | |
| CAAACTCTTGGCATCTGCTC+AGG | + | chr7_4:46177750-46177769 | Msa1157260:intron | 50.0% | |
| !! | AAGGCTTTGGGCAAGGTTGA+TGG | - | chr7_4:46177813-46177832 | None:intergenic | 50.0% |
| CATCACGGTTAGCAAGGCTT+TGG | - | chr7_4:46177826-46177845 | None:intergenic | 50.0% | |
| CAAAGCCTTGCTAACCGTGA+TGG | + | chr7_4:46177824-46177843 | Msa1157260:CDS | 50.0% | |
| GAAACCCATCACGGTTAGCA+AGG | - | chr7_4:46177832-46177851 | None:intergenic | 50.0% | |
| GAAGGAACCCTCCCAAACAA+AGG | - | chr7_4:46178316-46178335 | None:intergenic | 50.0% | |
| ! | GTATCAGGTTGCATCATGCC+TGG | - | chr7_4:46178649-46178668 | None:intergenic | 50.0% |
| ! | GTTCATTTTGAGCCTGGGAG+AGG | - | chr7_4:46178691-46178710 | None:intergenic | 50.0% |
| ! | GGCAAGGTTCATTTTGAGCC+TGG | - | chr7_4:46178697-46178716 | None:intergenic | 50.0% |
| ATCCTGATGGTCCTGTCAAG+AGG | + | chr7_4:46179135-46179154 | Msa1157260:CDS | 50.0% | |
| TACCTCTTGACAGGACCATC+AGG | - | chr7_4:46179140-46179159 | None:intergenic | 50.0% | |
| TGTCACGAGCCCAAACTAAC+TGG | - | chr7_4:46179448-46179467 | None:intergenic | 50.0% | |
| ATCCTTGGCTACCTCAGGTT+CGG | - | chr7_4:46179714-46179733 | None:intergenic | 50.0% | |
| TCATCATCCTTGGCTACCTC+AGG | - | chr7_4:46179719-46179738 | None:intergenic | 50.0% | |
| AAATGCCACAGTGGCAACAC+GGG | - | chr7_4:46179822-46179841 | None:intergenic | 50.0% | |
| GAAATGCCACAGTGGCAACA+CGG | - | chr7_4:46179823-46179842 | None:intergenic | 50.0% | |
| GTAACGAAACCACCCTCCGA+TGG | + | chr7_4:46173869-46173888 | Msa1157260:exon | 55.0% | |
| AACGAATTCCGGCCATCGGA+GGG | - | chr7_4:46173884-46173903 | None:intergenic | 55.0% | |
| AAACGAATTCCGGCCATCGG+AGG | - | chr7_4:46173885-46173904 | None:intergenic | 55.0% | |
| ATGAGTCAGCGGCGATGGAA+CGG | - | chr7_4:46173980-46173999 | None:intergenic | 55.0% | |
| !! | GCTGCCGTACTCGCTTTTGA+TGG | - | chr7_4:46174006-46174025 | None:intergenic | 55.0% |
| CGATGACGATCAACGCCATG+CGG | + | chr7_4:46174031-46174050 | Msa1157260:CDS | 55.0% | |
| TGTAATCTGATGCGGCACGG+AGG | - | chr7_4:46174085-46174104 | None:intergenic | 55.0% | |
| TCCGTGCCGCATCAGATTAC+AGG | + | chr7_4:46174084-46174103 | Msa1157260:CDS | 55.0% | |
| CATCGGAGAGAGAGGTGATG+AGG | - | chr7_4:46174117-46174136 | None:intergenic | 55.0% | |
| AGCCTATGAAGCACGGACAC+CGG | - | chr7_4:46175477-46175496 | None:intergenic | 55.0% | |
| GTGTCCGTGCTTCATAGGCT+CGG | + | chr7_4:46175477-46175496 | Msa1157260:intron | 55.0% | |
| !! | GGTTAGCAAGGCTTTGGGCA+AGG | - | chr7_4:46177820-46177839 | None:intergenic | 55.0% |
| !! | GTGCTGCTTTCCCATGAAGC+AGG | - | chr7_4:46178624-46178643 | None:intergenic | 55.0% |
| CATATTAGGCTGCCTCTCCC+AGG | + | chr7_4:46178676-46178695 | Msa1157260:intron | 55.0% | |
| ! | GTTTCAAGGCTGGTTGCTCC+TGG | + | chr7_4:46179321-46179340 | Msa1157260:CDS | 55.0% |
| TCCTTGGCTACCTCAGGTTC+GGG | - | chr7_4:46179713-46179732 | None:intergenic | 55.0% | |
| GGCCGGAATTCGTTTGCAGC+CGG | + | chr7_4:46173890-46173909 | Msa1157260:CDS | 60.0% | |
| TGCGAGACGTCGGAGTCTTC+CGG | - | chr7_4:46173912-46173931 | None:intergenic | 60.0% | |
| ! | TCGCGCTTGTTGCGAGACGT+CGG | - | chr7_4:46173922-46173941 | None:intergenic | 60.0% |
| !! | GTTCCATCGCCGCTGACTCA+TGG | + | chr7_4:46173979-46173998 | Msa1157260:CDS | 60.0% |
| GTCCGGTGTCCGTGCTTCAT+AGG | + | chr7_4:46175472-46175491 | Msa1157260:intron | 60.0% | |
| CATGGGAAAGCAGCACTGCC+AGG | + | chr7_4:46178628-46178647 | Msa1157260:intron | 60.0% | |
| ! | TCAAGGCTGGTTGCTCCTGG+TGG | + | chr7_4:46179324-46179343 | Msa1157260:CDS | 60.0% |
| ! | TGCTACTTCCCCCGAACCTG+AGG | + | chr7_4:46179700-46179719 | Msa1157260:CDS | 60.0% |
| CTTGGCTACCTCAGGTTCGG+GGG | - | chr7_4:46179711-46179730 | None:intergenic | 60.0% | |
| CCTTGGCTACCTCAGGTTCG+GGG | - | chr7_4:46179712-46179731 | None:intergenic | 60.0% | |
| AGTGGCAACACGGGAGCCTA+CGG | - | chr7_4:46179813-46179832 | None:intergenic | 60.0% | |
| CGAAACCACCCTCCGATGGC+CGG | + | chr7_4:46173873-46173892 | Msa1157260:exon | 65.0% | |
| GAATTCCGGCCATCGGAGGG+TGG | - | chr7_4:46173881-46173900 | None:intergenic | 65.0% | |
| GGCGATGGAACGGTCGTCGT+CGG | - | chr7_4:46173970-46173989 | None:intergenic | 65.0% | |
| GGACCATGAGTCAGCGGCGA+TGG | - | chr7_4:46173985-46174004 | None:intergenic | 65.0% | |
| CCCCGAACCTGAGGTAGCCA+AGG | + | chr7_4:46179709-46179728 | Msa1157260:CDS | 65.0% | |
| AGGCTCCCGTGTTGCCACTG+TGG | + | chr7_4:46179814-46179833 | Msa1157260:CDS | 65.0% | |
| GAGCTTCAGCGGCGTCCGCA+TGG | - | chr7_4:46174049-46174068 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 46173711 | 46180183 | 46173711 | ID=Msa1157260;Name=Msa1157260 |
| chr7_4 | mRNA | 46173711 | 46180183 | 46173711 | ID=Msa1157260-mRNA-1;Parent=Msa1157260;Name=Msa1157260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=177|0.8|1|1|0.8|0.83|6|330|298 |
| chr7_4 | exon | 46173711 | 46174105 | 46173711 | ID=Msa1157260-mRNA-1:exon:11994;Parent=Msa1157260-mRNA-1 |
| chr7_4 | exon | 46176929 | 46177129 | 46176929 | ID=Msa1157260-mRNA-1:exon:11995;Parent=Msa1157260-mRNA-1 |
| chr7_4 | exon | 46177772 | 46177868 | 46177772 | ID=Msa1157260-mRNA-1:exon:11996;Parent=Msa1157260-mRNA-1 |
| chr7_4 | exon | 46179053 | 46179156 | 46179053 | ID=Msa1157260-mRNA-1:exon:11997;Parent=Msa1157260-mRNA-1 |
| chr7_4 | exon | 46179302 | 46179353 | 46179302 | ID=Msa1157260-mRNA-1:exon:11998;Parent=Msa1157260-mRNA-1 |
| chr7_4 | exon | 46179629 | 46180183 | 46179629 | ID=Msa1157260-mRNA-1:exon:11999;Parent=Msa1157260-mRNA-1 |
| chr7_4 | five_prime_UTR | 46173711 | 46173887 | 46173711 | ID=Msa1157260-mRNA-1:five_prime_utr;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46173888 | 46174105 | 46173888 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46176929 | 46177129 | 46176929 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46177772 | 46177868 | 46177772 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46179053 | 46179156 | 46179053 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46179302 | 46179353 | 46179302 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | CDS | 46179629 | 46179853 | 46179629 | ID=Msa1157260-mRNA-1:cds;Parent=Msa1157260-mRNA-1 |
| chr7_4 | three_prime_UTR | 46179854 | 46180183 | 46179854 | ID=Msa1157260-mRNA-1:three_prime_utr;Parent=Msa1157260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
