Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158270 | AEO16612.1 | 80.114 | 176 | 0 | 1 | 1 | 141 | 1 | 176 | 1.77e-91 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158270 | sp|Q93WI9|HD3A_ORYSJ | 59.429 | 175 | 34 | 2 | 1 | 138 | 1 | 175 | 8.31e-69 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158270 | G3FCS8 | 80.114 | 176 | 0 | 1 | 1 | 141 | 1 | 176 | 8.46e-92 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1158270 | Msa1158280 | 0.803031 | 4.232373e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158270 | MtrunA17_Chr7g0252784 | 78.977 | 176 | 2 | 1 | 1 | 141 | 1 | 176 | 2.73e-94 | 270 |
| Msa1158270 | MtrunA17_Chr6g0461711 | 61.272 | 173 | 32 | 1 | 1 | 138 | 1 | 173 | 1.12e-70 | 210 |
| Msa1158270 | MtrunA17_Chr7g0252800 | 60.571 | 175 | 34 | 1 | 2 | 141 | 3 | 177 | 2.88e-70 | 209 |
| Msa1158270 | MtrunA17_Chr7g0214761 | 56.897 | 174 | 39 | 2 | 1 | 138 | 1 | 174 | 4.45e-60 | 183 |
| Msa1158270 | MtrunA17_Chr7g0214771 | 55.747 | 174 | 41 | 2 | 1 | 138 | 1 | 174 | 4.01e-59 | 181 |
| Msa1158270 | MtrunA17_Chr6g0472451 | 47.590 | 166 | 52 | 1 | 8 | 138 | 7 | 172 | 4.22e-50 | 157 |
| Msa1158270 | MtrunA17_Chr7g0252811 | 48.750 | 160 | 46 | 2 | 14 | 138 | 36 | 194 | 5.37e-48 | 153 |
| Msa1158270 | MtrunA17_Chr7g0266201 | 44.828 | 174 | 60 | 1 | 1 | 138 | 1 | 174 | 8.36e-47 | 149 |
| Msa1158270 | MtrunA17_Chr2g0321301 | 44.643 | 168 | 57 | 2 | 7 | 138 | 6 | 173 | 8.86e-47 | 149 |
| Msa1158270 | MtrunA17_Chr1g0178751 | 42.424 | 165 | 58 | 1 | 1 | 128 | 1 | 165 | 5.35e-42 | 137 |
| Msa1158270 | MtrunA17_Chr8g0392741 | 42.529 | 174 | 63 | 2 | 1 | 138 | 1 | 173 | 1.28e-40 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158270 | AT1G65480.1 | 57.225 | 173 | 39 | 1 | 1 | 138 | 1 | 173 | 4.23e-66 | 198 |
| Msa1158270 | AT1G65480.2 | 57.225 | 173 | 39 | 1 | 1 | 138 | 45 | 217 | 4.40e-66 | 200 |
| Msa1158270 | AT4G20370.1 | 53.179 | 173 | 46 | 1 | 1 | 138 | 1 | 173 | 7.59e-60 | 182 |
| Msa1158270 | AT2G27550.1 | 45.714 | 175 | 58 | 2 | 1 | 138 | 1 | 175 | 7.05e-47 | 150 |
| Msa1158270 | AT5G03840.1 | 44.910 | 167 | 56 | 1 | 8 | 138 | 11 | 177 | 2.68e-46 | 148 |
| Msa1158270 | AT5G62040.1 | 44.379 | 169 | 57 | 2 | 7 | 138 | 6 | 174 | 5.81e-45 | 145 |
| Msa1158270 | AT1G18100.1 | 40.462 | 173 | 65 | 2 | 3 | 138 | 2 | 173 | 1.52e-37 | 126 |
Find 45 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCAGTAGGGCGTGTAAT+AGG | 0.241456 | 7_4:-47531596 | Msa1158270:CDS |
| GAGCTCAAACCTTCTCAAAT+TGG | 0.266960 | 7_4:-47531497 | Msa1158270:CDS |
| TCCTTAAAAGTGGGGTTACT+TGG | 0.279792 | 7_4:+47531265 | None:intergenic |
| TGGCAGTAGGGCGTGTAATA+GGG | 0.326565 | 7_4:-47531595 | Msa1158270:CDS |
| TTACTTGGGCTAGGTGAATC+AGG | 0.383636 | 7_4:+47531280 | None:intergenic |
| TTTGCTGAACTCTACAATCT+TGG | 0.383955 | 7_4:-47529977 | Msa1158270:CDS |
| AAAGTGACTTCAGTGGTTCC+TGG | 0.411425 | 7_4:+47531107 | None:intergenic |
| TGTCAAAGGGAGAGTGGCTC+TGG | 0.412838 | 7_4:-47529926 | Msa1158270:CDS |
| AGGTTGGTGACTGATATTCC+AGG | 0.439180 | 7_4:-47531125 | Msa1158270:CDS |
| GGTAATAAAGATGTGAATAA+TGG | 0.441855 | 7_4:-47531524 | Msa1158270:CDS |
| GTTTCCACCAACACTCACTC+TGG | 0.463855 | 7_4:+47531466 | None:intergenic |
| TTAATATAATAATTATCTAA+AGG | 0.478344 | 7_4:+47529895 | None:intergenic |
| TTGAAGAAGACAGCAGCAAC+AGG | 0.481772 | 7_4:+47529950 | None:intergenic |
| CTGTCTTCTTCAATTGTCAA+AGG | 0.484561 | 7_4:-47529940 | Msa1158270:CDS |
| GGAACCACTGAAGTCACTTT+CGG | 0.499071 | 7_4:-47531104 | Msa1158270:intron |
| CAACCCAGAGTGAGTGTTGG+TGG | 0.502018 | 7_4:-47531470 | Msa1158270:CDS |
| CCTTAAAAGTGGGGTTACTT+GGG | 0.502208 | 7_4:+47531266 | None:intergenic |
| ATTCCTCTCCGAGTGACCTA+TGG | 0.511136 | 7_4:-47531545 | Msa1158270:CDS |
| TGTCTTCTTCAATTGTCAAA+GGG | 0.520471 | 7_4:-47529939 | Msa1158270:CDS |
| GTGGAGGTACTCCTTAAAAG+TGG | 0.534289 | 7_4:+47531255 | None:intergenic |
| TGAGAACTGAGAACCACATA+TGG | 0.535865 | 7_4:-47531639 | Msa1158270:exon |
| CTTTATTACCATAGGTCACT+CGG | 0.538470 | 7_4:+47531537 | None:intergenic |
| ATTCACATCTTTATTACCAT+AGG | 0.539018 | 7_4:+47531529 | None:intergenic |
| GAGAGGAATGGAACTTTCAA+AGG | 0.547771 | 7_4:+47531559 | None:intergenic |
| TTCAATTGTCAAAGGGAGAG+TGG | 0.552986 | 7_4:-47529932 | Msa1158270:CDS |
| AAAGTGGGGTTACTTGGGCT+AGG | 0.558426 | 7_4:+47531271 | None:intergenic |
| GGCAGTAGGGCGTGTAATAG+GGG | 0.558784 | 7_4:-47531594 | Msa1158270:CDS |
| TTTCCACCAACACTCACTCT+GGG | 0.558856 | 7_4:+47531467 | None:intergenic |
| CAGTGGATTCCTACTGCTAC+CGG | 0.564407 | 7_4:+47531616 | None:intergenic |
| GGTTGATTGCCAATTTGAGA+AGG | 0.568164 | 7_4:+47531488 | None:intergenic |
| TGGAGGTACTCCTTAAAAGT+GGG | 0.569324 | 7_4:+47531256 | None:intergenic |
| CGGTAGCAGTAGGAATCCAC+TGG | 0.569750 | 7_4:-47531615 | Msa1158270:CDS |
| AGTAGGAATCCACTGGCAGT+AGG | 0.585752 | 7_4:-47531608 | Msa1158270:CDS |
| CACATATGGCCGGTAGCAGT+AGG | 0.586122 | 7_4:-47531625 | Msa1158270:exon |
| TGTAAATTACTAGGGTGTAG+AGG | 0.586142 | 7_4:+47531432 | None:intergenic |
| ATAGGTCACTCGGAGAGGAA+TGG | 0.588640 | 7_4:+47531547 | None:intergenic |
| AACTGAGAACCACATATGGC+CGG | 0.594659 | 7_4:-47531635 | Msa1158270:exon |
| CAAAGGGAGAGTGGCTCTGG+CGG | 0.601132 | 7_4:-47529923 | Msa1158270:CDS |
| GTAGGAATCCACTGGCAGTA+GGG | 0.606226 | 7_4:-47531607 | Msa1158270:CDS |
| ATTACACGCCCTACTGCCAG+TGG | 0.621832 | 7_4:+47531599 | None:intergenic |
| TTACCATAGGTCACTCGGAG+AGG | 0.633443 | 7_4:+47531542 | None:intergenic |
| ATTGATTTACTCACCAGTGG+AGG | 0.648865 | 7_4:+47531239 | None:intergenic |
| CATACCGAAAGTGACTTCAG+TGG | 0.673624 | 7_4:+47531100 | None:intergenic |
| GGAGGTACTCCTTAAAAGTG+GGG | 0.684138 | 7_4:+47531257 | None:intergenic |
| AATCAACCCAGAGTGAGTGT+TGG | 0.706365 | 7_4:-47531473 | Msa1158270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTTAAATAT+AGG | - | chr7_4:47530975-47530994 | Msa1158270:intron | 0.0% |
| !!! | AATTTTTTTTTTTTAAATAT+AGG | - | chr7_4:47530975-47530994 | Msa1158270:intron | 0.0% |
| !!! | TGAAGAAATTTTAATTTTTT+TGG | - | chr7_4:47531070-47531089 | Msa1158270:intron | 10.0% |
| !!! | TGAAGAAATTTTAATTTTTT+TGG | - | chr7_4:47531070-47531089 | Msa1158270:intron | 10.0% |
| !! | CTATATAATGTAAATTACTA+GGG | + | chr7_4:47530145-47530164 | None:intergenic | 15.0% |
| !! | ACTATATAATGTAAATTACT+AGG | + | chr7_4:47530146-47530165 | None:intergenic | 15.0% |
| !! | TATTATTTAACAAAAGTCTT+AGG | + | chr7_4:47530390-47530409 | None:intergenic | 15.0% |
| !!! | TTTTTACAAATAAAGTTAGA+GGG | - | chr7_4:47530557-47530576 | Msa1158270:intron | 15.0% |
| !! | TAACTTCAAAATATGAAAAA+AGG | - | chr7_4:47530789-47530808 | Msa1158270:intron | 15.0% |
| !!! | GTTTTTTATAAATTGCAAAT+TGG | + | chr7_4:47530845-47530864 | None:intergenic | 15.0% |
| !! | CTATATAATGTAAATTACTA+GGG | + | chr7_4:47530145-47530164 | None:intergenic | 15.0% |
| !! | ACTATATAATGTAAATTACT+AGG | + | chr7_4:47530146-47530165 | None:intergenic | 15.0% |
| !! | TATTATTTAACAAAAGTCTT+AGG | + | chr7_4:47530390-47530409 | None:intergenic | 15.0% |
| !!! | TTTTTACAAATAAAGTTAGA+GGG | - | chr7_4:47530557-47530576 | Msa1158270:intron | 15.0% |
| !! | TAACTTCAAAATATGAAAAA+AGG | - | chr7_4:47530789-47530808 | Msa1158270:intron | 15.0% |
| !!! | GTTTTTTATAAATTGCAAAT+TGG | + | chr7_4:47530845-47530864 | None:intergenic | 15.0% |
| !! | AGAAACTACATTATGATAAT+AGG | + | chr7_4:47530231-47530250 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTCTATTTTTAT+AGG | - | chr7_4:47530252-47530271 | Msa1158270:intron | 20.0% |
| !! | ATAATATAACAAGAACTCAA+TGG | - | chr7_4:47530511-47530530 | Msa1158270:intron | 20.0% |
| !! | TAATATAACAAGAACTCAAT+GGG | - | chr7_4:47530512-47530531 | Msa1158270:intron | 20.0% |
| !!! | CTTTTTACAAATAAAGTTAG+AGG | - | chr7_4:47530556-47530575 | Msa1158270:intron | 20.0% |
| !!! | TTTAGAGAAACTAGAATTTT+AGG | - | chr7_4:47530642-47530661 | Msa1158270:intron | 20.0% |
| !! | GCAATTTATAAAAAACTCAT+AGG | - | chr7_4:47530849-47530868 | Msa1158270:intron | 20.0% |
| !!! | AATTTTCAAAAACTGCAAAT+TGG | + | chr7_4:47530877-47530896 | None:intergenic | 20.0% |
| !!! | TGCAGTTTTTGAAAATTTAA+AGG | - | chr7_4:47530880-47530899 | Msa1158270:intron | 20.0% |
| !!! | GCAGTTTTTGAAAATTTAAA+GGG | - | chr7_4:47530881-47530900 | Msa1158270:intron | 20.0% |
| !! | AATAAATGAATATGCTACAA+TGG | + | chr7_4:47531276-47531295 | None:intergenic | 20.0% |
| !! | ATCAAACTCAAAATTAACTA+GGG | + | chr7_4:47531422-47531441 | None:intergenic | 20.0% |
| !! | AATCAAACTCAAAATTAACT+AGG | + | chr7_4:47531423-47531442 | None:intergenic | 20.0% |
| !! | AGAAACTACATTATGATAAT+AGG | + | chr7_4:47530231-47530250 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTCTATTTTTAT+AGG | - | chr7_4:47530252-47530271 | Msa1158270:intron | 20.0% |
| !! | ATAATATAACAAGAACTCAA+TGG | - | chr7_4:47530511-47530530 | Msa1158270:intron | 20.0% |
| !! | TAATATAACAAGAACTCAAT+GGG | - | chr7_4:47530512-47530531 | Msa1158270:intron | 20.0% |
| !!! | CTTTTTACAAATAAAGTTAG+AGG | - | chr7_4:47530556-47530575 | Msa1158270:intron | 20.0% |
| !!! | TTTAGAGAAACTAGAATTTT+AGG | - | chr7_4:47530642-47530661 | Msa1158270:intron | 20.0% |
| !! | GCAATTTATAAAAAACTCAT+AGG | - | chr7_4:47530849-47530868 | Msa1158270:intron | 20.0% |
| !!! | AATTTTCAAAAACTGCAAAT+TGG | + | chr7_4:47530877-47530896 | None:intergenic | 20.0% |
| !!! | TGCAGTTTTTGAAAATTTAA+AGG | - | chr7_4:47530880-47530899 | Msa1158270:intron | 20.0% |
| !!! | GCAGTTTTTGAAAATTTAAA+GGG | - | chr7_4:47530881-47530900 | Msa1158270:intron | 20.0% |
| !! | AATAAATGAATATGCTACAA+TGG | + | chr7_4:47531276-47531295 | None:intergenic | 20.0% |
| !! | ATCAAACTCAAAATTAACTA+GGG | + | chr7_4:47531422-47531441 | None:intergenic | 20.0% |
| !! | AATCAAACTCAAAATTAACT+AGG | + | chr7_4:47531423-47531442 | None:intergenic | 20.0% |
| ! | ATTCACATCTTTATTACCAT+AGG | + | chr7_4:47530040-47530059 | None:intergenic | 25.0% |
| ! | GGTAATAAAGATGTGAATAA+TGG | - | chr7_4:47530042-47530061 | Msa1158270:intron | 25.0% |
| !!! | TGCTCTATTTTTATAGGTTA+TGG | - | chr7_4:47530258-47530277 | Msa1158270:intron | 25.0% |
| !!! | TCTATTTTTATAGGTTATGG+TGG | - | chr7_4:47530261-47530280 | Msa1158270:intron | 25.0% |
| !! | CATTTCTAATTTTTCTTGCT+TGG | - | chr7_4:47530693-47530712 | Msa1158270:intron | 25.0% |
| ! | ATGAAATTTCAGAAAAGTTG+AGG | - | chr7_4:47530763-47530782 | Msa1158270:intron | 25.0% |
| ! | TGAAATTTCAGAAAAGTTGA+GGG | - | chr7_4:47530764-47530783 | Msa1158270:intron | 25.0% |
| ! | CACTTTCAAATTATGCAAAT+TGG | + | chr7_4:47531003-47531022 | None:intergenic | 25.0% |
| !! | GGTTTTTACCAAAATCATAT+TGG | + | chr7_4:47531164-47531183 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGTTCTAATGCAT+TGG | + | chr7_4:47531185-47531204 | None:intergenic | 25.0% |
| !! | TTTTGCATTTCTTAGATGTT+TGG | + | chr7_4:47531248-47531267 | None:intergenic | 25.0% |
| ! | TATTAAAGAGAAAGACTACA+TGG | - | chr7_4:47531350-47531369 | Msa1158270:intron | 25.0% |
| ! | AAATGAACAATTCTACCAAT+AGG | + | chr7_4:47531381-47531400 | None:intergenic | 25.0% |
| ! | ATGAGGTTGTAAATTATGAA+AGG | - | chr7_4:47531459-47531478 | Msa1158270:CDS | 25.0% |
| ! | ATTCACATCTTTATTACCAT+AGG | + | chr7_4:47530040-47530059 | None:intergenic | 25.0% |
| ! | GGTAATAAAGATGTGAATAA+TGG | - | chr7_4:47530042-47530061 | Msa1158270:intron | 25.0% |
| !!! | TGCTCTATTTTTATAGGTTA+TGG | - | chr7_4:47530258-47530277 | Msa1158270:intron | 25.0% |
| !!! | TCTATTTTTATAGGTTATGG+TGG | - | chr7_4:47530261-47530280 | Msa1158270:intron | 25.0% |
| !! | CATTTCTAATTTTTCTTGCT+TGG | - | chr7_4:47530693-47530712 | Msa1158270:intron | 25.0% |
| ! | ATGAAATTTCAGAAAAGTTG+AGG | - | chr7_4:47530763-47530782 | Msa1158270:intron | 25.0% |
| ! | TGAAATTTCAGAAAAGTTGA+GGG | - | chr7_4:47530764-47530783 | Msa1158270:intron | 25.0% |
| ! | CACTTTCAAATTATGCAAAT+TGG | + | chr7_4:47531003-47531022 | None:intergenic | 25.0% |
| !! | GGTTTTTACCAAAATCATAT+TGG | + | chr7_4:47531164-47531183 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGTTCTAATGCAT+TGG | + | chr7_4:47531185-47531204 | None:intergenic | 25.0% |
| !! | TTTTGCATTTCTTAGATGTT+TGG | + | chr7_4:47531248-47531267 | None:intergenic | 25.0% |
| ! | TATTAAAGAGAAAGACTACA+TGG | - | chr7_4:47531350-47531369 | Msa1158270:intron | 25.0% |
| ! | AAATGAACAATTCTACCAAT+AGG | + | chr7_4:47531381-47531400 | None:intergenic | 25.0% |
| ! | ATGAGGTTGTAAATTATGAA+AGG | - | chr7_4:47531459-47531478 | Msa1158270:CDS | 25.0% |
| CTCTTCTCTCAATAAACTTT+AGG | - | chr7_4:47530421-47530440 | Msa1158270:intron | 30.0% | |
| TCTCTCAATAAACTTTAGGT+TGG | - | chr7_4:47530425-47530444 | Msa1158270:intron | 30.0% | |
| ! | GTATGTATCTGTTACTTGTT+AGG | - | chr7_4:47530484-47530503 | Msa1158270:intron | 30.0% |
| ! | AATCCAACAAAGTTTAAGAC+TGG | + | chr7_4:47530737-47530756 | None:intergenic | 30.0% |
| CTCTGAATTTGACAAAACTA+TGG | + | chr7_4:47531220-47531239 | None:intergenic | 30.0% | |
| AAACTCAAAATTAACTAGGG+TGG | + | chr7_4:47531419-47531438 | None:intergenic | 30.0% | |
| !! | AGTTTGATTGATTTGCACAT+AGG | - | chr7_4:47531434-47531453 | Msa1158270:intron | 30.0% |
| ! | TGCTACATTGTTGATGAAAT+AGG | + | chr7_4:47531523-47531542 | None:intergenic | 30.0% |
| TTTCATCAACAATGTAGCAA+AGG | - | chr7_4:47531524-47531543 | Msa1158270:CDS | 30.0% | |
| TTCATCAACAATGTAGCAAA+GGG | - | chr7_4:47531525-47531544 | Msa1158270:CDS | 30.0% | |
| TGTCTTCTTCAATTGTCAAA+GGG | - | chr7_4:47531627-47531646 | Msa1158270:exon | 30.0% | |
| CTCTTCTCTCAATAAACTTT+AGG | - | chr7_4:47530421-47530440 | Msa1158270:intron | 30.0% | |
| TCTCTCAATAAACTTTAGGT+TGG | - | chr7_4:47530425-47530444 | Msa1158270:intron | 30.0% | |
| ! | GTATGTATCTGTTACTTGTT+AGG | - | chr7_4:47530484-47530503 | Msa1158270:intron | 30.0% |
| ! | AATCCAACAAAGTTTAAGAC+TGG | + | chr7_4:47530737-47530756 | None:intergenic | 30.0% |
| CTCTGAATTTGACAAAACTA+TGG | + | chr7_4:47531220-47531239 | None:intergenic | 30.0% | |
| AAACTCAAAATTAACTAGGG+TGG | + | chr7_4:47531419-47531438 | None:intergenic | 30.0% | |
| !! | AGTTTGATTGATTTGCACAT+AGG | - | chr7_4:47531434-47531453 | Msa1158270:intron | 30.0% |
| ! | TGCTACATTGTTGATGAAAT+AGG | + | chr7_4:47531523-47531542 | None:intergenic | 30.0% |
| TTTCATCAACAATGTAGCAA+AGG | - | chr7_4:47531524-47531543 | Msa1158270:CDS | 30.0% | |
| TTCATCAACAATGTAGCAAA+GGG | - | chr7_4:47531525-47531544 | Msa1158270:CDS | 30.0% | |
| TGTCTTCTTCAATTGTCAAA+GGG | - | chr7_4:47531627-47531646 | Msa1158270:exon | 30.0% | |
| CTTTATTACCATAGGTCACT+CGG | + | chr7_4:47530032-47530051 | None:intergenic | 35.0% | |
| TGTAAATTACTAGGGTGTAG+AGG | + | chr7_4:47530137-47530156 | None:intergenic | 35.0% | |
| ! | GTAATTGATTTACTCACCAG+TGG | + | chr7_4:47530333-47530352 | None:intergenic | 35.0% |
| TTTCAATCATAAGCAGCGTA+AGG | + | chr7_4:47530359-47530378 | None:intergenic | 35.0% | |
| ACATTACTCTTGAGTGTGTT+TGG | - | chr7_4:47530602-47530621 | Msa1158270:intron | 35.0% | |
| TCTCCAGTCTTAAACTTTGT+TGG | - | chr7_4:47530731-47530750 | Msa1158270:intron | 35.0% | |
| ! | ACCACATGCCAATATGATTT+TGG | - | chr7_4:47531153-47531172 | Msa1158270:intron | 35.0% |
| ACCAAAATCATATTGGCATG+TGG | + | chr7_4:47531157-47531176 | None:intergenic | 35.0% | |
| ! | TGATTTGCACATAGGTAATG+AGG | - | chr7_4:47531442-47531461 | Msa1158270:CDS | 35.0% |
| TTTGCTGAACTCTACAATCT+TGG | - | chr7_4:47531589-47531608 | Msa1158270:CDS | 35.0% | |
| CTGTCTTCTTCAATTGTCAA+AGG | - | chr7_4:47531626-47531645 | Msa1158270:exon | 35.0% | |
| CTTTATTACCATAGGTCACT+CGG | + | chr7_4:47530032-47530051 | None:intergenic | 35.0% | |
| TGTAAATTACTAGGGTGTAG+AGG | + | chr7_4:47530137-47530156 | None:intergenic | 35.0% | |
| ! | GTAATTGATTTACTCACCAG+TGG | + | chr7_4:47530333-47530352 | None:intergenic | 35.0% |
| TTTCAATCATAAGCAGCGTA+AGG | + | chr7_4:47530359-47530378 | None:intergenic | 35.0% | |
| ACATTACTCTTGAGTGTGTT+TGG | - | chr7_4:47530602-47530621 | Msa1158270:intron | 35.0% | |
| TCTCCAGTCTTAAACTTTGT+TGG | - | chr7_4:47530731-47530750 | Msa1158270:intron | 35.0% | |
| ! | ACCACATGCCAATATGATTT+TGG | - | chr7_4:47531153-47531172 | Msa1158270:intron | 35.0% |
| ACCAAAATCATATTGGCATG+TGG | + | chr7_4:47531157-47531176 | None:intergenic | 35.0% | |
| ! | TGATTTGCACATAGGTAATG+AGG | - | chr7_4:47531442-47531461 | Msa1158270:CDS | 35.0% |
| TTTGCTGAACTCTACAATCT+TGG | - | chr7_4:47531589-47531608 | Msa1158270:CDS | 35.0% | |
| CTGTCTTCTTCAATTGTCAA+AGG | - | chr7_4:47531626-47531645 | Msa1158270:exon | 35.0% | |
| TGAGAACTGAGAACCACATA+TGG | - | chr7_4:47529927-47529946 | Msa1158270:CDS | 40.0% | |
| GAGAGGAATGGAACTTTCAA+AGG | + | chr7_4:47530010-47530029 | None:intergenic | 40.0% | |
| GAGCTCAAACCTTCTCAAAT+TGG | - | chr7_4:47530069-47530088 | Msa1158270:intron | 40.0% | |
| GGTTGATTGCCAATTTGAGA+AGG | + | chr7_4:47530081-47530100 | None:intergenic | 40.0% | |
| CCTTAAAAGTGGGGTTACTT+GGG | + | chr7_4:47530303-47530322 | None:intergenic | 40.0% | |
| TCCTTAAAAGTGGGGTTACT+TGG | + | chr7_4:47530304-47530323 | None:intergenic | 40.0% | |
| !! | TGGAGGTACTCCTTAAAAGT+GGG | + | chr7_4:47530313-47530332 | None:intergenic | 40.0% |
| ! | ATTGATTTACTCACCAGTGG+AGG | + | chr7_4:47530330-47530349 | None:intergenic | 40.0% |
| GACTACATGGTTATGCCTAT+TGG | - | chr7_4:47531363-47531382 | Msa1158270:intron | 40.0% | |
| ATAGGACAAACACGAAACGA+TGG | + | chr7_4:47531505-47531524 | None:intergenic | 40.0% | |
| ! | TTGAAATTTTGTCGCCATCC+TGG | + | chr7_4:47531559-47531578 | None:intergenic | 40.0% |
| TTCAATTGTCAAAGGGAGAG+TGG | - | chr7_4:47531634-47531653 | Msa1158270:exon | 40.0% | |
| TGAGAACTGAGAACCACATA+TGG | - | chr7_4:47529927-47529946 | Msa1158270:CDS | 40.0% | |
| GAGAGGAATGGAACTTTCAA+AGG | + | chr7_4:47530010-47530029 | None:intergenic | 40.0% | |
| GAGCTCAAACCTTCTCAAAT+TGG | - | chr7_4:47530069-47530088 | Msa1158270:intron | 40.0% | |
| GGTTGATTGCCAATTTGAGA+AGG | + | chr7_4:47530081-47530100 | None:intergenic | 40.0% | |
| CCTTAAAAGTGGGGTTACTT+GGG | + | chr7_4:47530303-47530322 | None:intergenic | 40.0% | |
| TCCTTAAAAGTGGGGTTACT+TGG | + | chr7_4:47530304-47530323 | None:intergenic | 40.0% | |
| !! | TGGAGGTACTCCTTAAAAGT+GGG | + | chr7_4:47530313-47530332 | None:intergenic | 40.0% |
| ! | ATTGATTTACTCACCAGTGG+AGG | + | chr7_4:47530330-47530349 | None:intergenic | 40.0% |
| GACTACATGGTTATGCCTAT+TGG | - | chr7_4:47531363-47531382 | Msa1158270:intron | 40.0% | |
| ATAGGACAAACACGAAACGA+TGG | + | chr7_4:47531505-47531524 | None:intergenic | 40.0% | |
| ! | TTGAAATTTTGTCGCCATCC+TGG | + | chr7_4:47531559-47531578 | None:intergenic | 40.0% |
| TTCAATTGTCAAAGGGAGAG+TGG | - | chr7_4:47531634-47531653 | Msa1158270:exon | 40.0% | |
| AACTGAGAACCACATATGGC+CGG | - | chr7_4:47529931-47529950 | Msa1158270:CDS | 45.0% | |
| AATCAACCCAGAGTGAGTGT+TGG | - | chr7_4:47530093-47530112 | Msa1158270:intron | 45.0% | |
| TTTCCACCAACACTCACTCT+GGG | + | chr7_4:47530102-47530121 | None:intergenic | 45.0% | |
| ! | TTACTTGGGCTAGGTGAATC+AGG | + | chr7_4:47530289-47530308 | None:intergenic | 45.0% |
| !! | CCCAAGTAACCCCACTTTTA+AGG | - | chr7_4:47530300-47530319 | Msa1158270:intron | 45.0% |
| !! | GGAGGTACTCCTTAAAAGTG+GGG | + | chr7_4:47530312-47530331 | None:intergenic | 45.0% |
| !! | GTGGAGGTACTCCTTAAAAG+TGG | + | chr7_4:47530314-47530333 | None:intergenic | 45.0% |
| !!! | CTTTTAAGGAGTACCTCCAC+TGG | - | chr7_4:47530314-47530333 | Msa1158270:intron | 45.0% |
| !! | AGGTTGGTGACTGATATTCC+AGG | - | chr7_4:47530441-47530460 | Msa1158270:intron | 45.0% |
| AAAGTGACTTCAGTGGTTCC+TGG | + | chr7_4:47530462-47530481 | None:intergenic | 45.0% | |
| ! | GGAACCACTGAAGTCACTTT+CGG | - | chr7_4:47530462-47530481 | Msa1158270:intron | 45.0% |
| CATACCGAAAGTGACTTCAG+TGG | + | chr7_4:47530469-47530488 | None:intergenic | 45.0% | |
| TAGCAAAGGGTTTATGCTCC+AGG | - | chr7_4:47531538-47531557 | Msa1158270:CDS | 45.0% | |
| AAAGGGTTTATGCTCCAGGA+TGG | - | chr7_4:47531542-47531561 | Msa1158270:CDS | 45.0% | |
| TTGAAGAAGACAGCAGCAAC+AGG | + | chr7_4:47531619-47531638 | None:intergenic | 45.0% | |
| AACTGAGAACCACATATGGC+CGG | - | chr7_4:47529931-47529950 | Msa1158270:CDS | 45.0% | |
| AATCAACCCAGAGTGAGTGT+TGG | - | chr7_4:47530093-47530112 | Msa1158270:intron | 45.0% | |
| TTTCCACCAACACTCACTCT+GGG | + | chr7_4:47530102-47530121 | None:intergenic | 45.0% | |
| ! | TTACTTGGGCTAGGTGAATC+AGG | + | chr7_4:47530289-47530308 | None:intergenic | 45.0% |
| !! | CCCAAGTAACCCCACTTTTA+AGG | - | chr7_4:47530300-47530319 | Msa1158270:intron | 45.0% |
| !! | GGAGGTACTCCTTAAAAGTG+GGG | + | chr7_4:47530312-47530331 | None:intergenic | 45.0% |
| !! | GTGGAGGTACTCCTTAAAAG+TGG | + | chr7_4:47530314-47530333 | None:intergenic | 45.0% |
| !!! | CTTTTAAGGAGTACCTCCAC+TGG | - | chr7_4:47530314-47530333 | Msa1158270:intron | 45.0% |
| !! | AGGTTGGTGACTGATATTCC+AGG | - | chr7_4:47530441-47530460 | Msa1158270:intron | 45.0% |
| AAAGTGACTTCAGTGGTTCC+TGG | + | chr7_4:47530462-47530481 | None:intergenic | 45.0% | |
| ! | GGAACCACTGAAGTCACTTT+CGG | - | chr7_4:47530462-47530481 | Msa1158270:intron | 45.0% |
| CATACCGAAAGTGACTTCAG+TGG | + | chr7_4:47530469-47530488 | None:intergenic | 45.0% | |
| TAGCAAAGGGTTTATGCTCC+AGG | - | chr7_4:47531538-47531557 | Msa1158270:CDS | 45.0% | |
| AAAGGGTTTATGCTCCAGGA+TGG | - | chr7_4:47531542-47531561 | Msa1158270:CDS | 45.0% | |
| TTGAAGAAGACAGCAGCAAC+AGG | + | chr7_4:47531619-47531638 | None:intergenic | 45.0% | |
| !!! | TTACAATTTTTTAAAATTAT+AGG | - | chr7_4:47530818-47530837 | Msa1158270:intron | 5.0% |
| !!! | TATTTTAAAAAAATACAAAT+TGG | + | chr7_4:47530908-47530927 | None:intergenic | 5.0% |
| !!! | TTTGTATTTTTTTAAAATAT+AGG | - | chr7_4:47530909-47530928 | Msa1158270:intron | 5.0% |
| !!! | TTGTATTTTTTTAAAATATA+GGG | - | chr7_4:47530910-47530929 | Msa1158270:intron | 5.0% |
| !!! | ATTATTAAAATTTTGAAATT+TGG | + | chr7_4:47530937-47530956 | None:intergenic | 5.0% |
| !!! | TCAAAATTTTAATAATATAT+AGG | - | chr7_4:47530941-47530960 | Msa1158270:intron | 5.0% |
| !!! | CAAAATTTTAATAATATATA+GGG | - | chr7_4:47530942-47530961 | Msa1158270:intron | 5.0% |
| !!! | TTACAATTTTTTAAAATTAT+AGG | - | chr7_4:47530818-47530837 | Msa1158270:intron | 5.0% |
| !!! | TATTTTAAAAAAATACAAAT+TGG | + | chr7_4:47530908-47530927 | None:intergenic | 5.0% |
| !!! | TTTGTATTTTTTTAAAATAT+AGG | - | chr7_4:47530909-47530928 | Msa1158270:intron | 5.0% |
| !!! | TTGTATTTTTTTAAAATATA+GGG | - | chr7_4:47530910-47530929 | Msa1158270:intron | 5.0% |
| !!! | ATTATTAAAATTTTGAAATT+TGG | + | chr7_4:47530937-47530956 | None:intergenic | 5.0% |
| !!! | TCAAAATTTTAATAATATAT+AGG | - | chr7_4:47530941-47530960 | Msa1158270:intron | 5.0% |
| !!! | CAAAATTTTAATAATATATA+GGG | - | chr7_4:47530942-47530961 | Msa1158270:intron | 5.0% |
| ! | CAGTGGATTCCTACTGCTAC+CGG | + | chr7_4:47529953-47529972 | None:intergenic | 50.0% |
| AGTAGGAATCCACTGGCAGT+AGG | - | chr7_4:47529958-47529977 | Msa1158270:CDS | 50.0% | |
| GTAGGAATCCACTGGCAGTA+GGG | - | chr7_4:47529959-47529978 | Msa1158270:CDS | 50.0% | |
| TGGCAGTAGGGCGTGTAATA+GGG | - | chr7_4:47529971-47529990 | Msa1158270:CDS | 50.0% | |
| ATAGGTCACTCGGAGAGGAA+TGG | + | chr7_4:47530022-47530041 | None:intergenic | 50.0% | |
| ATTCCTCTCCGAGTGACCTA+TGG | - | chr7_4:47530021-47530040 | Msa1158270:intron | 50.0% | |
| TTACCATAGGTCACTCGGAG+AGG | + | chr7_4:47530027-47530046 | None:intergenic | 50.0% | |
| GTTTCCACCAACACTCACTC+TGG | + | chr7_4:47530103-47530122 | None:intergenic | 50.0% | |
| AAAGTGGGGTTACTTGGGCT+AGG | + | chr7_4:47530298-47530317 | None:intergenic | 50.0% | |
| AAACGATGGATCCCCGAAGT+GGG | + | chr7_4:47531491-47531510 | None:intergenic | 50.0% | |
| ! | CAGTGGATTCCTACTGCTAC+CGG | + | chr7_4:47529953-47529972 | None:intergenic | 50.0% |
| AGTAGGAATCCACTGGCAGT+AGG | - | chr7_4:47529958-47529977 | Msa1158270:CDS | 50.0% | |
| GTAGGAATCCACTGGCAGTA+GGG | - | chr7_4:47529959-47529978 | Msa1158270:CDS | 50.0% | |
| TGGCAGTAGGGCGTGTAATA+GGG | - | chr7_4:47529971-47529990 | Msa1158270:CDS | 50.0% | |
| ATAGGTCACTCGGAGAGGAA+TGG | + | chr7_4:47530022-47530041 | None:intergenic | 50.0% | |
| ATTCCTCTCCGAGTGACCTA+TGG | - | chr7_4:47530021-47530040 | Msa1158270:intron | 50.0% | |
| TTACCATAGGTCACTCGGAG+AGG | + | chr7_4:47530027-47530046 | None:intergenic | 50.0% | |
| GTTTCCACCAACACTCACTC+TGG | + | chr7_4:47530103-47530122 | None:intergenic | 50.0% | |
| AAAGTGGGGTTACTTGGGCT+AGG | + | chr7_4:47530298-47530317 | None:intergenic | 50.0% | |
| AAACGATGGATCCCCGAAGT+GGG | + | chr7_4:47531491-47531510 | None:intergenic | 50.0% | |
| CTACTGCTACCGGCCATATG+TGG | + | chr7_4:47529943-47529962 | None:intergenic | 55.0% | |
| CACATATGGCCGGTAGCAGT+AGG | - | chr7_4:47529941-47529960 | Msa1158270:CDS | 55.0% | |
| CGGTAGCAGTAGGAATCCAC+TGG | - | chr7_4:47529951-47529970 | Msa1158270:CDS | 55.0% | |
| ATTACACGCCCTACTGCCAG+TGG | + | chr7_4:47529970-47529989 | None:intergenic | 55.0% | |
| CTGGCAGTAGGGCGTGTAAT+AGG | - | chr7_4:47529970-47529989 | Msa1158270:CDS | 55.0% | |
| GGCAGTAGGGCGTGTAATAG+GGG | - | chr7_4:47529972-47529991 | Msa1158270:CDS | 55.0% | |
| !! | CAACCCAGAGTGAGTGTTGG+TGG | - | chr7_4:47530096-47530115 | Msa1158270:intron | 55.0% |
| TGAAAGGCCACGACCCACTT+CGG | - | chr7_4:47531475-47531494 | Msa1158270:CDS | 55.0% | |
| GAAACGATGGATCCCCGAAG+TGG | + | chr7_4:47531492-47531511 | None:intergenic | 55.0% | |
| TGTCAAAGGGAGAGTGGCTC+TGG | - | chr7_4:47531640-47531659 | Msa1158270:exon | 55.0% | |
| CTACTGCTACCGGCCATATG+TGG | + | chr7_4:47529943-47529962 | None:intergenic | 55.0% | |
| CACATATGGCCGGTAGCAGT+AGG | - | chr7_4:47529941-47529960 | Msa1158270:CDS | 55.0% | |
| CGGTAGCAGTAGGAATCCAC+TGG | - | chr7_4:47529951-47529970 | Msa1158270:CDS | 55.0% | |
| ATTACACGCCCTACTGCCAG+TGG | + | chr7_4:47529970-47529989 | None:intergenic | 55.0% | |
| CTGGCAGTAGGGCGTGTAAT+AGG | - | chr7_4:47529970-47529989 | Msa1158270:CDS | 55.0% | |
| GGCAGTAGGGCGTGTAATAG+GGG | - | chr7_4:47529972-47529991 | Msa1158270:CDS | 55.0% | |
| !! | CAACCCAGAGTGAGTGTTGG+TGG | - | chr7_4:47530096-47530115 | Msa1158270:intron | 55.0% |
| TGAAAGGCCACGACCCACTT+CGG | - | chr7_4:47531475-47531494 | Msa1158270:CDS | 55.0% | |
| GAAACGATGGATCCCCGAAG+TGG | + | chr7_4:47531492-47531511 | None:intergenic | 55.0% | |
| TGTCAAAGGGAGAGTGGCTC+TGG | - | chr7_4:47531640-47531659 | Msa1158270:exon | 55.0% | |
| GAAAGGCCACGACCCACTTC+GGG | - | chr7_4:47531476-47531495 | Msa1158270:CDS | 60.0% | |
| AAAGGCCACGACCCACTTCG+GGG | - | chr7_4:47531477-47531496 | Msa1158270:CDS | 60.0% | |
| !! | CAAAGGGAGAGTGGCTCTGG+CGG | - | chr7_4:47531643-47531662 | Msa1158270:five_prime_UTR | 60.0% |
| GAAAGGCCACGACCCACTTC+GGG | - | chr7_4:47531476-47531495 | Msa1158270:CDS | 60.0% | |
| AAAGGCCACGACCCACTTCG+GGG | - | chr7_4:47531477-47531496 | Msa1158270:CDS | 60.0% | |
| !! | CAAAGGGAGAGTGGCTCTGG+CGG | - | chr7_4:47531643-47531662 | Msa1158270:five_prime_UTR | 60.0% |
| TGGATCCCCGAAGTGGGTCG+TGG | + | chr7_4:47531485-47531504 | None:intergenic | 65.0% | |
| TGGATCCCCGAAGTGGGTCG+TGG | + | chr7_4:47531485-47531504 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 47529907 | 47531681 | 47529907 | ID=Msa1158270;Name=Msa1158270 |
| chr7_4 | mRNA | 47529907 | 47531681 | 47529907 | ID=Msa1158270-mRNA-1;Parent=Msa1158270;Name=Msa1158270-mRNA-1;_AED=0.17;_eAED=0.17;_QI=39|0.66|0.75|1|1|1|4|0|141 |
| chr7_4 | exon | 47529907 | 47530028 | 47529907 | ID=Msa1158270-mRNA-1:exon:12703;Parent=Msa1158270-mRNA-1 |
| chr7_4 | exon | 47531105 | 47531145 | 47531105 | ID=Msa1158270-mRNA-1:exon:12702;Parent=Msa1158270-mRNA-1 |
| chr7_4 | exon | 47531253 | 47531314 | 47531253 | ID=Msa1158270-mRNA-1:exon:12701;Parent=Msa1158270-mRNA-1 |
| chr7_4 | exon | 47531442 | 47531681 | 47531442 | ID=Msa1158270-mRNA-1:exon:12700;Parent=Msa1158270-mRNA-1 |
| chr7_4 | five_prime_UTR | 47531643 | 47531681 | 47531643 | ID=Msa1158270-mRNA-1:five_prime_utr;Parent=Msa1158270-mRNA-1 |
| chr7_4 | CDS | 47531442 | 47531642 | 47531442 | ID=Msa1158270-mRNA-1:cds;Parent=Msa1158270-mRNA-1 |
| chr7_4 | CDS | 47531253 | 47531314 | 47531253 | ID=Msa1158270-mRNA-1:cds;Parent=Msa1158270-mRNA-1 |
| chr7_4 | CDS | 47531105 | 47531145 | 47531105 | ID=Msa1158270-mRNA-1:cds;Parent=Msa1158270-mRNA-1 |
| chr7_4 | CDS | 47529907 | 47530028 | 47529907 | ID=Msa1158270-mRNA-1:cds;Parent=Msa1158270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
