Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158280 | AEO16612.1 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 6.90e-127 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158280 | sp|Q93WI9|HD3A_ORYSJ | 73.714 | 175 | 44 | 1 | 1 | 173 | 1 | 175 | 6.36e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158280 | G3FCS8 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 3.29e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1158280 | 0.817027 | 4.080738e-52 | -8.615850e-47 |
| Msa0011920 | Msa1158280 | 0.821063 | 4.927615e-53 | -8.615850e-47 |
| Msa0025060 | Msa1158280 | 0.815626 | 8.395804e-52 | -8.615850e-47 |
| Msa0025090 | Msa1158280 | 0.822928 | 1.821981e-53 | -8.615850e-47 |
| Msa0049670 | Msa1158280 | 0.809637 | 1.714914e-50 | -8.615850e-47 |
| Msa0056220 | Msa1158280 | 0.807283 | 5.450966e-50 | -8.615850e-47 |
| Msa0056230 | Msa1158280 | 0.808582 | 2.885188e-50 | -8.615850e-47 |
| Msa0072590 | Msa1158280 | 0.826146 | 3.183403e-54 | -8.615850e-47 |
| Msa0080060 | Msa1158280 | 0.802062 | 6.703023e-49 | -8.615850e-47 |
| Msa0081700 | Msa1158280 | 0.821580 | 3.744707e-53 | -8.615850e-47 |
| Msa0091300 | Msa1158280 | 0.806503 | 7.970371e-50 | -8.615850e-47 |
| Msa0604890 | Msa1158280 | 0.803890 | 2.808535e-49 | -8.615850e-47 |
| Msa0617470 | Msa1158280 | 0.818505 | 1.892619e-52 | -8.615850e-47 |
| Msa0622930 | Msa1158280 | 0.800095 | 1.692489e-48 | -8.615850e-47 |
| Msa0625550 | Msa1158280 | 0.809650 | 1.703798e-50 | -8.615850e-47 |
| Msa0654400 | Msa1158280 | 0.833166 | 6.234461e-56 | -8.615850e-47 |
| Msa0654500 | Msa1158280 | 0.827115 | 1.869410e-54 | -8.615850e-47 |
| Msa0656570 | Msa1158280 | 0.804767 | 1.844135e-49 | -8.615850e-47 |
| Msa0676290 | Msa1158280 | 0.826530 | 2.578521e-54 | -8.615850e-47 |
| Msa0690100 | Msa1158280 | 0.802291 | 6.016229e-49 | -8.615850e-47 |
| Msa0700250 | Msa1158280 | 0.811113 | 8.235693e-51 | -8.615850e-47 |
| Msa0722660 | Msa1158280 | 0.807834 | 4.164817e-50 | -8.615850e-47 |
| Msa0742690 | Msa1158280 | 0.818713 | 1.698075e-52 | -8.615850e-47 |
| Msa0779830 | Msa1158280 | 0.822815 | 1.935282e-53 | -8.615850e-47 |
| Msa0827560 | Msa1158280 | 0.821692 | 3.526555e-53 | -8.615850e-47 |
| Msa0829770 | Msa1158280 | 0.810211 | 1.289955e-50 | -8.615850e-47 |
| Msa0127910 | Msa1158280 | 0.816789 | 4.613111e-52 | -8.615850e-47 |
| Msa0139930 | Msa1158280 | 0.855665 | 5.417593e-62 | -8.615850e-47 |
| Msa0173950 | Msa1158280 | 0.811799 | 5.843569e-51 | -8.615850e-47 |
| Msa0174060 | Msa1158280 | 0.818407 | 1.992521e-52 | -8.615850e-47 |
| Msa0183960 | Msa1158280 | 0.820031 | 8.501707e-53 | -8.615850e-47 |
| Msa0198140 | Msa1158280 | 0.810673 | 1.025324e-50 | -8.615850e-47 |
| Msa0198220 | Msa1158280 | 0.803019 | 4.256796e-49 | -8.615850e-47 |
| Msa0228360 | Msa1158280 | 0.804535 | 2.062078e-49 | -8.615850e-47 |
| Msa0232660 | Msa1158280 | 0.808591 | 2.872211e-50 | -8.615850e-47 |
| Msa0368450 | Msa1158280 | 0.807557 | 4.769032e-50 | -8.615850e-47 |
| Msa0378440 | Msa1158280 | 0.801359 | 9.346716e-49 | -8.615850e-47 |
| Msa0385280 | Msa1158280 | 0.816486 | 5.395318e-52 | -8.615850e-47 |
| Msa0390590 | Msa1158280 | 0.817265 | 3.606703e-52 | -8.615850e-47 |
| Msa0414510 | Msa1158280 | 0.821930 | 3.106423e-53 | -8.615850e-47 |
| Msa0427890 | Msa1158280 | 0.819656 | 1.035447e-52 | -8.615850e-47 |
| Msa0474120 | Msa1158280 | 0.817385 | 3.389947e-52 | -8.615850e-47 |
| Msa0475690 | Msa1158280 | 0.800125 | 1.669099e-48 | -8.615850e-47 |
| Msa1004310 | Msa1158280 | 0.806708 | 7.213503e-50 | -8.615850e-47 |
| Msa1004630 | Msa1158280 | 0.828877 | 7.042281e-55 | -8.615850e-47 |
| Msa1004660 | Msa1158280 | 0.853866 | 1.800402e-61 | -8.615850e-47 |
| Msa1011140 | Msa1158280 | 0.801679 | 8.036403e-49 | -8.615850e-47 |
| Msa1018210 | Msa1158280 | 0.809329 | 1.996374e-50 | -8.615850e-47 |
| Msa1031310 | Msa1158280 | 0.988634 | 8.536518e-175 | -8.615850e-47 |
| Msa1038570 | Msa1158280 | 0.800145 | 1.653487e-48 | -8.615850e-47 |
| Msa1045940 | Msa1158280 | 0.845503 | 3.899437e-59 | -8.615850e-47 |
| Msa1046980 | Msa1158280 | 0.851545 | 8.278249e-61 | -8.615850e-47 |
| Msa1046990 | Msa1158280 | 0.852594 | 4.165755e-61 | -8.615850e-47 |
| Msa1057940 | Msa1158280 | 0.817593 | 3.042816e-52 | -8.615850e-47 |
| Msa1078280 | Msa1158280 | 0.801586 | 8.397163e-49 | -8.615850e-47 |
| Msa1091130 | Msa1158280 | 0.846314 | 2.348305e-59 | -8.615850e-47 |
| Msa1101050 | Msa1158280 | 0.957407 | 2.922491e-115 | -8.615850e-47 |
| Msa1104020 | Msa1158280 | 0.827540 | 1.479036e-54 | -8.615850e-47 |
| Msa0278340 | Msa1158280 | 0.808586 | 2.879143e-50 | -8.615850e-47 |
| Msa0294200 | Msa1158280 | -0.804522 | 2.074518e-49 | -8.615850e-47 |
| Msa0362440 | Msa1158280 | 0.814362 | 1.601616e-51 | -8.615850e-47 |
| Msa1112210 | Msa1158280 | 0.802386 | 5.749211e-49 | -8.615850e-47 |
| Msa1129160 | Msa1158280 | 0.802831 | 4.655221e-49 | -8.615850e-47 |
| Msa1129470 | Msa1158280 | 0.800206 | 1.607124e-48 | -8.615850e-47 |
| Msa1134430 | Msa1158280 | 0.844821 | 5.960579e-59 | -8.615850e-47 |
| Msa1134460 | Msa1158280 | 0.818257 | 2.154307e-52 | -8.615850e-47 |
| Msa1134480 | Msa1158280 | 0.832125 | 1.130100e-55 | -8.615850e-47 |
| Msa1144380 | Msa1158280 | 0.802207 | 6.260913e-49 | -8.615850e-47 |
| Msa1158270 | Msa1158280 | 0.803031 | 4.232373e-49 | -8.615850e-47 |
| Msa1158280 | Msa1181370 | 0.803551 | 3.302868e-49 | -8.615850e-47 |
| Msa1158280 | Msa1199540 | 0.804752 | 1.858015e-49 | -8.615850e-47 |
| Msa1158280 | Msa1213470 | 0.819718 | 1.002355e-52 | -8.615850e-47 |
| Msa1158280 | Msa1219530 | 0.809628 | 1.722178e-50 | -8.615850e-47 |
| Msa1158280 | Msa1300370 | 0.821318 | 4.302409e-53 | -8.615850e-47 |
| Msa1158280 | Msa1305970 | 0.822039 | 2.931893e-53 | -8.615850e-47 |
| Msa1158280 | Msa1333220 | 0.805600 | 1.234398e-49 | -8.615850e-47 |
| Msa1158280 | Msa1374210 | 0.802912 | 4.478254e-49 | -8.615850e-47 |
| Msa1158280 | Msa1397560 | 0.816678 | 4.887038e-52 | -8.615850e-47 |
| Msa1158280 | Msa1409360 | 0.810920 | 9.065963e-51 | -8.615850e-47 |
| Msa1158280 | Msa1410480 | 0.804029 | 2.627513e-49 | -8.615850e-47 |
| Msa1158280 | Msa1421520 | 0.822855 | 1.894981e-53 | -8.615850e-47 |
| Msa1158280 | Msa1422820 | 0.804337 | 2.267584e-49 | -8.615850e-47 |
| Msa1158280 | Msa1433060 | 0.804731 | 1.876303e-49 | -8.615850e-47 |
| Msa1158280 | Msa1459130 | 0.800317 | 1.525199e-48 | -8.615850e-47 |
| Msa0502900 | Msa1158280 | 0.838473 | 2.816992e-57 | -8.615850e-47 |
| Msa0506090 | Msa1158280 | 0.840632 | 7.737399e-58 | -8.615850e-47 |
| Msa0523140 | Msa1158280 | 0.811510 | 6.752274e-51 | -8.615850e-47 |
| Msa0523150 | Msa1158280 | 0.805190 | 1.504308e-49 | -8.615850e-47 |
| Msa0533610 | Msa1158280 | 0.815183 | 1.053332e-51 | -8.615850e-47 |
| Msa0539570 | Msa1158280 | 0.823035 | 1.719947e-53 | -8.615850e-47 |
| Msa0545750 | Msa1158280 | 0.807996 | 3.846769e-50 | -8.615850e-47 |
| Msa0549550 | Msa1158280 | 0.806935 | 6.458303e-50 | -8.615850e-47 |
| Msa0559440 | Msa1158280 | 0.836503 | 9.010185e-57 | -8.615850e-47 |
| Msa0559640 | Msa1158280 | 0.820791 | 5.691748e-53 | -8.615850e-47 |
| Msa0577290 | Msa1158280 | 0.802860 | 4.592094e-49 | -8.615850e-47 |
| Msa0577960 | Msa1158280 | 0.808563 | 2.912349e-50 | -8.615850e-47 |
| Msa0862750 | Msa1158280 | 0.823620 | 1.255917e-53 | -8.615850e-47 |
| Msa0869320 | Msa1158280 | 0.813939 | 1.985250e-51 | -8.615850e-47 |
| Msa0870220 | Msa1158280 | 0.830769 | 2.436290e-55 | -8.615850e-47 |
| Msa0903460 | Msa1158280 | 0.819322 | 1.234094e-52 | -8.615850e-47 |
| Msa0934290 | Msa1158280 | 0.818990 | 1.468773e-52 | -8.615850e-47 |
| Msa0935930 | Msa1158280 | 0.828159 | 1.049607e-54 | -8.615850e-47 |
| Msa0956600 | Msa1158280 | 0.807337 | 5.310413e-50 | -8.615850e-47 |
| Msa0971780 | Msa1158280 | 0.822563 | 2.215444e-53 | -8.615850e-47 |
| Msa0972930 | Msa1158280 | 0.821497 | 3.913225e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158280 | MtrunA17_Chr7g0252784 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 1.69e-128 | 357 |
| Msa1158280 | MtrunA17_Chr7g0252800 | 77.714 | 175 | 39 | 0 | 2 | 176 | 3 | 177 | 3.56e-102 | 291 |
| Msa1158280 | MtrunA17_Chr6g0461711 | 74.566 | 173 | 44 | 0 | 1 | 173 | 1 | 173 | 3.01e-95 | 273 |
| Msa1158280 | MtrunA17_Chr7g0214761 | 70.690 | 174 | 50 | 1 | 1 | 173 | 1 | 174 | 7.49e-87 | 252 |
| Msa1158280 | MtrunA17_Chr7g0214771 | 68.966 | 174 | 53 | 1 | 1 | 173 | 1 | 174 | 1.96e-85 | 249 |
| Msa1158280 | MtrunA17_Chr6g0472451 | 59.639 | 166 | 67 | 0 | 8 | 173 | 7 | 172 | 7.51e-74 | 219 |
| Msa1158280 | MtrunA17_Chr7g0252811 | 61.250 | 160 | 61 | 1 | 14 | 173 | 36 | 194 | 1.55e-70 | 212 |
| Msa1158280 | MtrunA17_Chr7g0266201 | 57.471 | 174 | 73 | 1 | 1 | 173 | 1 | 174 | 6.23e-69 | 207 |
| Msa1158280 | MtrunA17_Chr2g0321301 | 56.548 | 168 | 72 | 1 | 7 | 173 | 6 | 173 | 8.41e-68 | 204 |
| Msa1158280 | MtrunA17_Chr1g0178751 | 52.727 | 165 | 76 | 1 | 1 | 163 | 1 | 165 | 9.99e-63 | 191 |
| Msa1158280 | MtrunA17_Chr8g0392741 | 50.575 | 174 | 84 | 2 | 1 | 173 | 1 | 173 | 1.15e-56 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158280 | AT1G65480.2 | 71.098 | 173 | 50 | 0 | 1 | 173 | 45 | 217 | 1.20e-91 | 266 |
| Msa1158280 | AT1G65480.1 | 71.098 | 173 | 50 | 0 | 1 | 173 | 1 | 173 | 1.72e-91 | 264 |
| Msa1158280 | AT4G20370.1 | 68.208 | 173 | 55 | 0 | 1 | 173 | 1 | 173 | 2.73e-85 | 248 |
| Msa1158280 | AT5G03840.1 | 58.333 | 168 | 67 | 2 | 8 | 173 | 11 | 177 | 8.03e-67 | 202 |
| Msa1158280 | AT5G62040.1 | 56.970 | 165 | 69 | 2 | 7 | 169 | 6 | 170 | 1.78e-66 | 201 |
| Msa1158280 | AT2G27550.1 | 56.000 | 175 | 75 | 2 | 1 | 173 | 1 | 175 | 3.26e-66 | 200 |
| Msa1158280 | AT1G18100.1 | 49.133 | 173 | 85 | 2 | 3 | 173 | 2 | 173 | 2.48e-54 | 170 |
Find 59 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTACATTGTTGATGAAAT+AGG | 0.231768 | 7_4:-47544855 | None:intergenic |
| CTGGCTGTAGGGCGTGTAAT+AGG | 0.236534 | 7_4:+47543304 | Msa1158280:CDS |
| GAGCTCAAACCTTCTCAAAT+TGG | 0.266960 | 7_4:+47543403 | Msa1158280:CDS |
| TCCTTAAAAGTGGGGTTACT+TGG | 0.279792 | 7_4:-47543635 | None:intergenic |
| TGGCTGTAGGGCGTGTAATA+GGG | 0.298942 | 7_4:+47543305 | Msa1158280:CDS |
| GAAAGGCCACGACCCACTTC+GGG | 0.356462 | 7_4:+47544811 | Msa1158280:CDS |
| TTACTTGGGCTAGGTGAATC+AGG | 0.383636 | 7_4:-47543620 | None:intergenic |
| TTTGCTGAACTCTACAATCT+TGG | 0.383955 | 7_4:+47544925 | Msa1158280:CDS |
| AAAGTGACTTCAGTGGTTCC+TGG | 0.411425 | 7_4:-47543793 | None:intergenic |
| TGTCAAAGGGAGAGTGGCTC+TGG | 0.412838 | 7_4:+47544976 | Msa1158280:CDS |
| AGGTTGGTGACTGATATTCC+AGG | 0.439180 | 7_4:+47543775 | Msa1158280:intron |
| GGTAATAAAGATGTGAATAA+TGG | 0.441855 | 7_4:+47543376 | Msa1158280:CDS |
| GTTTCCACCAACACTCACTC+TGG | 0.463855 | 7_4:-47543434 | None:intergenic |
| TGAAAGGCCACGACCCACTT+CGG | 0.476912 | 7_4:+47544810 | Msa1158280:CDS |
| TCATCAACAATGTAGACAAA+GGG | 0.476961 | 7_4:+47544861 | Msa1158280:CDS |
| TTAATATAATAATTATCTAA+AGG | 0.478344 | 7_4:-47545007 | None:intergenic |
| TTGAAGAAGACAGCAGCAAC+AGG | 0.481772 | 7_4:-47544952 | None:intergenic |
| CTGTCTTCTTCAATTGTCAA+AGG | 0.484561 | 7_4:+47544962 | Msa1158280:CDS |
| GGAACCACTGAAGTCACTTT+CGG | 0.499071 | 7_4:+47543796 | Msa1158280:CDS |
| CAACCCAGAGTGAGTGTTGG+TGG | 0.502018 | 7_4:+47543430 | Msa1158280:CDS |
| CCTTAAAAGTGGGGTTACTT+GGG | 0.502208 | 7_4:-47543634 | None:intergenic |
| AGACAAAGGGTTTATGCTCC+AGG | 0.503769 | 7_4:+47544874 | Msa1158280:CDS |
| ATTCCTCTCCGAGTGACCTA+TGG | 0.511136 | 7_4:+47543355 | Msa1158280:CDS |
| TGGATCCCCGAAGTGGGTCG+TGG | 0.516083 | 7_4:-47544817 | None:intergenic |
| TGTCTTCTTCAATTGTCAAA+GGG | 0.520471 | 7_4:+47544963 | Msa1158280:CDS |
| GTGGAGGTACTCCTTAAAAG+TGG | 0.534289 | 7_4:-47543645 | None:intergenic |
| GTAGGAATCCACTGGCTGTA+GGG | 0.534446 | 7_4:+47543293 | Msa1158280:CDS |
| TGAGAACTGAGAACCACATA+TGG | 0.535865 | 7_4:+47543261 | Msa1158280:exon |
| CTTTATTACCATAGGTCACT+CGG | 0.538470 | 7_4:-47543363 | None:intergenic |
| ATTCACATCTTTATTACCAT+AGG | 0.539018 | 7_4:-47543371 | None:intergenic |
| TTCATCAACAATGTAGACAA+AGG | 0.541638 | 7_4:+47544860 | Msa1158280:CDS |
| GAGAGGAATGGAACTTTCAA+AGG | 0.547771 | 7_4:-47543341 | None:intergenic |
| GGCTGTAGGGCGTGTAATAG+GGG | 0.552217 | 7_4:+47543306 | Msa1158280:CDS |
| TTCAATTGTCAAAGGGAGAG+TGG | 0.552986 | 7_4:+47544970 | Msa1158280:CDS |
| AAAGTGGGGTTACTTGGGCT+AGG | 0.558426 | 7_4:-47543629 | None:intergenic |
| TTTCCACCAACACTCACTCT+GGG | 0.558856 | 7_4:-47543433 | None:intergenic |
| TGATTTGCACATAGGTAATG+AGG | 0.563045 | 7_4:+47544777 | Msa1158280:intron |
| CGGTAGCAGTAGGAATCCAC+TGG | 0.566544 | 7_4:+47543285 | Msa1158280:CDS |
| GGTTGATTGCCAATTTGAGA+AGG | 0.568164 | 7_4:-47543412 | None:intergenic |
| TGGAGGTACTCCTTAAAAGT+GGG | 0.569324 | 7_4:-47543644 | None:intergenic |
| ATGAGGTTGTAAATTATGAA+AGG | 0.570056 | 7_4:+47544794 | Msa1158280:CDS |
| CACATATGGCCGGTAGCAGT+AGG | 0.586122 | 7_4:+47543275 | Msa1158280:exon |
| TGTAAATTACTAGGGTGTAG+AGG | 0.586142 | 7_4:-47543468 | None:intergenic |
| ATAGGTCACTCGGAGAGGAA+TGG | 0.588640 | 7_4:-47543353 | None:intergenic |
| AACTGAGAACCACATATGGC+CGG | 0.594659 | 7_4:+47543265 | Msa1158280:exon |
| CAAAGGGAGAGTGGCTCTGG+CGG | 0.601132 | 7_4:+47544979 | Msa1158280:CDS |
| AGTAGGAATCCACTGGCTGT+AGG | 0.611301 | 7_4:+47543292 | Msa1158280:CDS |
| AAACGATGGATCCCCGAAGT+GGG | 0.619464 | 7_4:-47544823 | None:intergenic |
| CAGTGGATTCCTACTGCTAC+CGG | 0.625296 | 7_4:-47543284 | None:intergenic |
| AAAGGCCACGACCCACTTCG+GGG | 0.626977 | 7_4:+47544812 | Msa1158280:CDS |
| GAAACGATGGATCCCCGAAG+TGG | 0.627096 | 7_4:-47544824 | None:intergenic |
| ATTACACGCCCTACAGCCAG+TGG | 0.629675 | 7_4:-47543301 | None:intergenic |
| TTACCATAGGTCACTCGGAG+AGG | 0.633443 | 7_4:-47543358 | None:intergenic |
| ATAGGACAAACACGAAACGA+TGG | 0.633568 | 7_4:-47544837 | None:intergenic |
| ATTGATTTACTCACCAGTGG+AGG | 0.648865 | 7_4:-47543661 | None:intergenic |
| AAAGGGTTTATGCTCCAGGA+TGG | 0.651446 | 7_4:+47544878 | Msa1158280:CDS |
| CATACCGAAAGTGACTTCAG+TGG | 0.673624 | 7_4:-47543800 | None:intergenic |
| GGAGGTACTCCTTAAAAGTG+GGG | 0.684138 | 7_4:-47543643 | None:intergenic |
| AATCAACCCAGAGTGAGTGT+TGG | 0.706365 | 7_4:+47543427 | Msa1158280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTAAAATAT+AGG | + | chr7_4:47544309-47544328 | Msa1158280:intron | 0.0% |
| !!! | TGAAGAAATTTTAATTTTTT+TGG | + | chr7_4:47544404-47544423 | Msa1158280:intron | 10.0% |
| !! | CTATATAATGTAAATTACTA+GGG | - | chr7_4:47543479-47543498 | None:intergenic | 15.0% |
| !! | ACTATATAATGTAAATTACT+AGG | - | chr7_4:47543480-47543499 | None:intergenic | 15.0% |
| !! | TATTATTTAACAAAAGTCTT+AGG | - | chr7_4:47543724-47543743 | None:intergenic | 15.0% |
| !!! | TTTTTACAAATAAAGTTAGA+GGG | + | chr7_4:47543891-47543910 | Msa1158280:intron | 15.0% |
| !! | TAACTTCAAAATATGAAAAA+AGG | + | chr7_4:47544123-47544142 | Msa1158280:intron | 15.0% |
| !!! | GTTTTTTATAAATTGCAAAT+TGG | - | chr7_4:47544179-47544198 | None:intergenic | 15.0% |
| !! | AGAAACTACATTATGATAAT+AGG | - | chr7_4:47543565-47543584 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTCTATTTTTAT+AGG | + | chr7_4:47543586-47543605 | Msa1158280:intron | 20.0% |
| !! | ATAATATAACAAGAACTCAA+TGG | + | chr7_4:47543845-47543864 | Msa1158280:intron | 20.0% |
| !! | TAATATAACAAGAACTCAAT+GGG | + | chr7_4:47543846-47543865 | Msa1158280:intron | 20.0% |
| !!! | CTTTTTACAAATAAAGTTAG+AGG | + | chr7_4:47543890-47543909 | Msa1158280:intron | 20.0% |
| !!! | TTTAGAGAAACTAGAATTTT+AGG | + | chr7_4:47543976-47543995 | Msa1158280:intron | 20.0% |
| !! | GCAATTTATAAAAAACTCAT+AGG | + | chr7_4:47544183-47544202 | Msa1158280:intron | 20.0% |
| !!! | AATTTTCAAAAACTGCAAAT+TGG | - | chr7_4:47544211-47544230 | None:intergenic | 20.0% |
| !!! | TGCAGTTTTTGAAAATTTAA+AGG | + | chr7_4:47544214-47544233 | Msa1158280:intron | 20.0% |
| !!! | GCAGTTTTTGAAAATTTAAA+GGG | + | chr7_4:47544215-47544234 | Msa1158280:intron | 20.0% |
| !! | AATAAATGAATATGCTACAA+TGG | - | chr7_4:47544610-47544629 | None:intergenic | 20.0% |
| !! | ATCAAACTCAAAATTAACTA+GGG | - | chr7_4:47544757-47544776 | None:intergenic | 20.0% |
| !! | AATCAAACTCAAAATTAACT+AGG | - | chr7_4:47544758-47544777 | None:intergenic | 20.0% |
| ! | ATTCACATCTTTATTACCAT+AGG | - | chr7_4:47543374-47543393 | None:intergenic | 25.0% |
| ! | GGTAATAAAGATGTGAATAA+TGG | + | chr7_4:47543376-47543395 | Msa1158280:CDS | 25.0% |
| !!! | TGCTCTATTTTTATAGGTTA+TGG | + | chr7_4:47543592-47543611 | Msa1158280:intron | 25.0% |
| !!! | TCTATTTTTATAGGTTATGG+TGG | + | chr7_4:47543595-47543614 | Msa1158280:intron | 25.0% |
| !! | CATTTCTAATTTTTCTTGCT+TGG | + | chr7_4:47544027-47544046 | Msa1158280:intron | 25.0% |
| ! | ATGAAATTTCAGAAAAGTTG+AGG | + | chr7_4:47544097-47544116 | Msa1158280:intron | 25.0% |
| ! | TGAAATTTCAGAAAAGTTGA+GGG | + | chr7_4:47544098-47544117 | Msa1158280:intron | 25.0% |
| ! | CACTTTCAAATTATGCAAAT+TGG | - | chr7_4:47544337-47544356 | None:intergenic | 25.0% |
| !! | GGTTTTTACCAAAATCATAT+TGG | - | chr7_4:47544498-47544517 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGTTCTAATGCAT+TGG | - | chr7_4:47544519-47544538 | None:intergenic | 25.0% |
| !! | TTTTGCATTTCTTAGATGTT+TGG | - | chr7_4:47544582-47544601 | None:intergenic | 25.0% |
| ! | TATTAAAGAGAAAGACTACA+TGG | + | chr7_4:47544685-47544704 | Msa1158280:intron | 25.0% |
| ! | AAATGAACAATTCTACCAAT+AGG | - | chr7_4:47544716-47544735 | None:intergenic | 25.0% |
| ! | ATGAGGTTGTAAATTATGAA+AGG | + | chr7_4:47544794-47544813 | Msa1158280:CDS | 25.0% |
| CTCTTCTCTCAATAAACTTT+AGG | + | chr7_4:47543755-47543774 | Msa1158280:intron | 30.0% | |
| TCTCTCAATAAACTTTAGGT+TGG | + | chr7_4:47543759-47543778 | Msa1158280:intron | 30.0% | |
| ! | GTATGTATCTGTTACTTGTT+AGG | + | chr7_4:47543818-47543837 | Msa1158280:intron | 30.0% |
| ! | AATCCAACAAAGTTTAAGAC+TGG | - | chr7_4:47544071-47544090 | None:intergenic | 30.0% |
| CTCTGAATTTGACAAAACTA+TGG | - | chr7_4:47544554-47544573 | None:intergenic | 30.0% | |
| AAACTCAAAATTAACTAGGG+TGG | - | chr7_4:47544754-47544773 | None:intergenic | 30.0% | |
| !! | AGTTTGATTGATTTGCACAT+AGG | + | chr7_4:47544769-47544788 | Msa1158280:intron | 30.0% |
| ! | GTCTACATTGTTGATGAAAT+AGG | - | chr7_4:47544858-47544877 | None:intergenic | 30.0% |
| TTCATCAACAATGTAGACAA+AGG | + | chr7_4:47544860-47544879 | Msa1158280:CDS | 30.0% | |
| TCATCAACAATGTAGACAAA+GGG | + | chr7_4:47544861-47544880 | Msa1158280:CDS | 30.0% | |
| TGTCTTCTTCAATTGTCAAA+GGG | + | chr7_4:47544963-47544982 | Msa1158280:CDS | 30.0% | |
| CTTTATTACCATAGGTCACT+CGG | - | chr7_4:47543366-47543385 | None:intergenic | 35.0% | |
| TGTAAATTACTAGGGTGTAG+AGG | - | chr7_4:47543471-47543490 | None:intergenic | 35.0% | |
| ! | GTAATTGATTTACTCACCAG+TGG | - | chr7_4:47543667-47543686 | None:intergenic | 35.0% |
| TTTCAATCATAAGCAGCGTA+AGG | - | chr7_4:47543693-47543712 | None:intergenic | 35.0% | |
| ACATTACTCTTGAGTGTGTT+TGG | + | chr7_4:47543936-47543955 | Msa1158280:intron | 35.0% | |
| TCTCCAGTCTTAAACTTTGT+TGG | + | chr7_4:47544065-47544084 | Msa1158280:intron | 35.0% | |
| ! | ACCACATGCCAATATGATTT+TGG | + | chr7_4:47544487-47544506 | Msa1158280:intron | 35.0% |
| ACCAAAATCATATTGGCATG+TGG | - | chr7_4:47544491-47544510 | None:intergenic | 35.0% | |
| ! | TGATTTGCACATAGGTAATG+AGG | + | chr7_4:47544777-47544796 | Msa1158280:intron | 35.0% |
| TTTGCTGAACTCTACAATCT+TGG | + | chr7_4:47544925-47544944 | Msa1158280:CDS | 35.0% | |
| CTGTCTTCTTCAATTGTCAA+AGG | + | chr7_4:47544962-47544981 | Msa1158280:CDS | 35.0% | |
| TGAGAACTGAGAACCACATA+TGG | + | chr7_4:47543261-47543280 | Msa1158280:exon | 40.0% | |
| GAGAGGAATGGAACTTTCAA+AGG | - | chr7_4:47543344-47543363 | None:intergenic | 40.0% | |
| GAGCTCAAACCTTCTCAAAT+TGG | + | chr7_4:47543403-47543422 | Msa1158280:CDS | 40.0% | |
| GGTTGATTGCCAATTTGAGA+AGG | - | chr7_4:47543415-47543434 | None:intergenic | 40.0% | |
| CCTTAAAAGTGGGGTTACTT+GGG | - | chr7_4:47543637-47543656 | None:intergenic | 40.0% | |
| TCCTTAAAAGTGGGGTTACT+TGG | - | chr7_4:47543638-47543657 | None:intergenic | 40.0% | |
| !! | TGGAGGTACTCCTTAAAAGT+GGG | - | chr7_4:47543647-47543666 | None:intergenic | 40.0% |
| ! | ATTGATTTACTCACCAGTGG+AGG | - | chr7_4:47543664-47543683 | None:intergenic | 40.0% |
| GACTACATGGTTATGCCTAT+TGG | + | chr7_4:47544698-47544717 | Msa1158280:intron | 40.0% | |
| ATAGGACAAACACGAAACGA+TGG | - | chr7_4:47544840-47544859 | None:intergenic | 40.0% | |
| ! | TTGAAATTTTGTCGCCATCC+TGG | - | chr7_4:47544895-47544914 | None:intergenic | 40.0% |
| TTCAATTGTCAAAGGGAGAG+TGG | + | chr7_4:47544970-47544989 | Msa1158280:CDS | 40.0% | |
| AACTGAGAACCACATATGGC+CGG | + | chr7_4:47543265-47543284 | Msa1158280:exon | 45.0% | |
| AATCAACCCAGAGTGAGTGT+TGG | + | chr7_4:47543427-47543446 | Msa1158280:CDS | 45.0% | |
| TTTCCACCAACACTCACTCT+GGG | - | chr7_4:47543436-47543455 | None:intergenic | 45.0% | |
| ! | TTACTTGGGCTAGGTGAATC+AGG | - | chr7_4:47543623-47543642 | None:intergenic | 45.0% |
| !! | CCCAAGTAACCCCACTTTTA+AGG | + | chr7_4:47543634-47543653 | Msa1158280:CDS | 45.0% |
| !! | GGAGGTACTCCTTAAAAGTG+GGG | - | chr7_4:47543646-47543665 | None:intergenic | 45.0% |
| !! | GTGGAGGTACTCCTTAAAAG+TGG | - | chr7_4:47543648-47543667 | None:intergenic | 45.0% |
| !!! | CTTTTAAGGAGTACCTCCAC+TGG | + | chr7_4:47543648-47543667 | Msa1158280:CDS | 45.0% |
| !! | AGGTTGGTGACTGATATTCC+AGG | + | chr7_4:47543775-47543794 | Msa1158280:intron | 45.0% |
| AAAGTGACTTCAGTGGTTCC+TGG | - | chr7_4:47543796-47543815 | None:intergenic | 45.0% | |
| ! | GGAACCACTGAAGTCACTTT+CGG | + | chr7_4:47543796-47543815 | Msa1158280:CDS | 45.0% |
| CATACCGAAAGTGACTTCAG+TGG | - | chr7_4:47543803-47543822 | None:intergenic | 45.0% | |
| AGACAAAGGGTTTATGCTCC+AGG | + | chr7_4:47544874-47544893 | Msa1158280:CDS | 45.0% | |
| AAAGGGTTTATGCTCCAGGA+TGG | + | chr7_4:47544878-47544897 | Msa1158280:CDS | 45.0% | |
| TTGAAGAAGACAGCAGCAAC+AGG | - | chr7_4:47544955-47544974 | None:intergenic | 45.0% | |
| !!! | TTACAATTTTTTAAAATTAT+AGG | + | chr7_4:47544152-47544171 | Msa1158280:intron | 5.0% |
| !!! | TATTTTAAAAAAATACAAAT+TGG | - | chr7_4:47544242-47544261 | None:intergenic | 5.0% |
| !!! | TTTGTATTTTTTTAAAATAT+AGG | + | chr7_4:47544243-47544262 | Msa1158280:intron | 5.0% |
| !!! | TTGTATTTTTTTAAAATATA+GGG | + | chr7_4:47544244-47544263 | Msa1158280:intron | 5.0% |
| !!! | ATTATTAAAATTTTGAAATT+TGG | - | chr7_4:47544271-47544290 | None:intergenic | 5.0% |
| !!! | TCAAAATTTTAATAATATAT+AGG | + | chr7_4:47544275-47544294 | Msa1158280:intron | 5.0% |
| !!! | CAAAATTTTAATAATATATA+GGG | + | chr7_4:47544276-47544295 | Msa1158280:intron | 5.0% |
| ! | CAGTGGATTCCTACTGCTAC+CGG | - | chr7_4:47543287-47543306 | None:intergenic | 50.0% |
| ! | AGTAGGAATCCACTGGCTGT+AGG | + | chr7_4:47543292-47543311 | Msa1158280:CDS | 50.0% |
| ! | GTAGGAATCCACTGGCTGTA+GGG | + | chr7_4:47543293-47543312 | Msa1158280:CDS | 50.0% |
| TGGCTGTAGGGCGTGTAATA+GGG | + | chr7_4:47543305-47543324 | Msa1158280:CDS | 50.0% | |
| ATAGGTCACTCGGAGAGGAA+TGG | - | chr7_4:47543356-47543375 | None:intergenic | 50.0% | |
| ATTCCTCTCCGAGTGACCTA+TGG | + | chr7_4:47543355-47543374 | Msa1158280:CDS | 50.0% | |
| TTACCATAGGTCACTCGGAG+AGG | - | chr7_4:47543361-47543380 | None:intergenic | 50.0% | |
| GTTTCCACCAACACTCACTC+TGG | - | chr7_4:47543437-47543456 | None:intergenic | 50.0% | |
| AAAGTGGGGTTACTTGGGCT+AGG | - | chr7_4:47543632-47543651 | None:intergenic | 50.0% | |
| AAACGATGGATCCCCGAAGT+GGG | - | chr7_4:47544826-47544845 | None:intergenic | 50.0% | |
| CTACTGCTACCGGCCATATG+TGG | - | chr7_4:47543277-47543296 | None:intergenic | 55.0% | |
| CACATATGGCCGGTAGCAGT+AGG | + | chr7_4:47543275-47543294 | Msa1158280:exon | 55.0% | |
| CGGTAGCAGTAGGAATCCAC+TGG | + | chr7_4:47543285-47543304 | Msa1158280:CDS | 55.0% | |
| ATTACACGCCCTACAGCCAG+TGG | - | chr7_4:47543304-47543323 | None:intergenic | 55.0% | |
| CTGGCTGTAGGGCGTGTAAT+AGG | + | chr7_4:47543304-47543323 | Msa1158280:CDS | 55.0% | |
| GGCTGTAGGGCGTGTAATAG+GGG | + | chr7_4:47543306-47543325 | Msa1158280:CDS | 55.0% | |
| !! | CAACCCAGAGTGAGTGTTGG+TGG | + | chr7_4:47543430-47543449 | Msa1158280:CDS | 55.0% |
| TGAAAGGCCACGACCCACTT+CGG | + | chr7_4:47544810-47544829 | Msa1158280:CDS | 55.0% | |
| GAAACGATGGATCCCCGAAG+TGG | - | chr7_4:47544827-47544846 | None:intergenic | 55.0% | |
| TGTCAAAGGGAGAGTGGCTC+TGG | + | chr7_4:47544976-47544995 | Msa1158280:CDS | 55.0% | |
| GAAAGGCCACGACCCACTTC+GGG | + | chr7_4:47544811-47544830 | Msa1158280:CDS | 60.0% | |
| AAAGGCCACGACCCACTTCG+GGG | + | chr7_4:47544812-47544831 | Msa1158280:CDS | 60.0% | |
| !! | CAAAGGGAGAGTGGCTCTGG+CGG | + | chr7_4:47544979-47544998 | Msa1158280:CDS | 60.0% |
| TGGATCCCCGAAGTGGGTCG+TGG | - | chr7_4:47544820-47544839 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 47543241 | 47545017 | 47543241 | ID=Msa1158280;Name=Msa1158280 |
| chr7_4 | mRNA | 47543241 | 47545017 | 47543241 | ID=Msa1158280-mRNA-1;Parent=Msa1158280;Name=Msa1158280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=39|1|0.75|1|1|1|4|0|176 |
| chr7_4 | exon | 47543241 | 47543480 | 47543241 | ID=Msa1158280-mRNA-1:exon:12686;Parent=Msa1158280-mRNA-1 |
| chr7_4 | exon | 47543608 | 47543669 | 47543608 | ID=Msa1158280-mRNA-1:exon:12687;Parent=Msa1158280-mRNA-1 |
| chr7_4 | exon | 47543777 | 47543817 | 47543777 | ID=Msa1158280-mRNA-1:exon:12688;Parent=Msa1158280-mRNA-1 |
| chr7_4 | exon | 47544791 | 47545017 | 47544791 | ID=Msa1158280-mRNA-1:exon:12689;Parent=Msa1158280-mRNA-1 |
| chr7_4 | five_prime_UTR | 47543241 | 47543279 | 47543241 | ID=Msa1158280-mRNA-1:five_prime_utr;Parent=Msa1158280-mRNA-1 |
| chr7_4 | CDS | 47543280 | 47543480 | 47543280 | ID=Msa1158280-mRNA-1:cds;Parent=Msa1158280-mRNA-1 |
| chr7_4 | CDS | 47543608 | 47543669 | 47543608 | ID=Msa1158280-mRNA-1:cds;Parent=Msa1158280-mRNA-1 |
| chr7_4 | CDS | 47543777 | 47543817 | 47543777 | ID=Msa1158280-mRNA-1:cds;Parent=Msa1158280-mRNA-1 |
| chr7_4 | CDS | 47544791 | 47545017 | 47544791 | ID=Msa1158280-mRNA-1:cds;Parent=Msa1158280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
