Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158490 | XP_003624615.1 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158490 | sp|B3H615|ING2_ARATH | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.70e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158490 | A2Q5P5 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1158490 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1158490 | Msa1170200 | 0.844330 | 8.084314e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158490 | MtrunA17_Chr7g0253141 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Msa1158490 | MtrunA17_Chr1g0169261 | 36.111 | 180 | 103 | 4 | 104 | 279 | 66 | 237 | 4.07e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1158490 | AT1G54390.4 | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.77e-131 | 373 |
| Msa1158490 | AT1G54390.3 | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.77e-131 | 373 |
| Msa1158490 | AT1G54390.7 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1158490 | AT1G54390.8 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1158490 | AT1G54390.5 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1158490 | AT1G54390.1 | 70.635 | 252 | 46 | 7 | 1 | 250 | 1 | 226 | 2.61e-101 | 298 |
| Msa1158490 | AT1G54390.2 | 69.841 | 252 | 48 | 7 | 1 | 250 | 1 | 226 | 2.91e-101 | 299 |
| Msa1158490 | AT1G54390.6 | 80.328 | 183 | 30 | 4 | 104 | 284 | 1 | 179 | 9.91e-95 | 277 |
| Msa1158490 | AT3G24010.1 | 38.012 | 171 | 90 | 4 | 109 | 279 | 70 | 224 | 1.91e-28 | 109 |
Find 89 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAATGCATGCATAATTT+TGG | 0.118953 | 7_4:+47899081 | Msa1158490:three_prime_UTR |
| CTGAAATTTCAGGTATCTTT+TGG | 0.176968 | 7_4:+47898737 | Msa1158490:intron |
| ATTGCAATAGAAGAAATATT+AGG | 0.213878 | 7_4:-47896707 | None:intergenic |
| GGTTGTGTTATATTAATTAA+TGG | 0.219226 | 7_4:+47899104 | Msa1158490:three_prime_UTR |
| GAACAAGCAAGAACACTTCT+AGG | 0.279202 | 7_4:+47896661 | Msa1158490:five_prime_UTR |
| CAATAATTATTCAATCAAAA+TGG | 0.287942 | 7_4:+47896726 | Msa1158490:exon |
| TGAACCTTGTCTCTTGTGTT+AGG | 0.290251 | 7_4:-47898939 | None:intergenic |
| GTTGTGTTATATTAATTAAT+GGG | 0.307987 | 7_4:+47899105 | Msa1158490:three_prime_UTR |
| TAGGCCTTCTTATGGCTTCC+TGG | 0.308667 | 7_4:-47898543 | None:intergenic |
| TTGCAATAGAAGAAATATTA+GGG | 0.310592 | 7_4:-47896706 | None:intergenic |
| AATCGAAGATACTTGATTAC+AGG | 0.314016 | 7_4:+47898481 | Msa1158490:CDS |
| AGTCTACGTCGATGACTATT+TGG | 0.315508 | 7_4:+47896765 | Msa1158490:CDS |
| ACACAGTATGTAGGTTCATT+TGG | 0.368463 | 7_4:-47898600 | None:intergenic |
| ACTTATGAACTTGGTTCAAC+TGG | 0.370387 | 7_4:-47899024 | None:intergenic |
| TGTAGGTTCATTTGGATCAA+TGG | 0.378225 | 7_4:-47898592 | None:intergenic |
| GGATCATATAGGCCTTCTTA+TGG | 0.390081 | 7_4:-47898551 | None:intergenic |
| ACTTTGTCTGCTGTCTGGTC+TGG | 0.412875 | 7_4:-47897140 | None:intergenic |
| GTAGGTTCATTTGGATCAAT+GGG | 0.417965 | 7_4:-47898591 | None:intergenic |
| AAATATTAGGGTTTGCGATT+GGG | 0.421821 | 7_4:-47896694 | None:intergenic |
| TACATACTGTGTTTGTCATC+AGG | 0.423437 | 7_4:+47898611 | Msa1158490:CDS |
| GAAATATTAGGGTTTGCGAT+TGG | 0.424049 | 7_4:-47896695 | None:intergenic |
| ACAGTACTTTGTCTGCTGTC+TGG | 0.430662 | 7_4:-47897145 | None:intergenic |
| TTGATTACAGGGAGAGAGAC+TGG | 0.434912 | 7_4:+47898493 | Msa1158490:CDS |
| CTTTAAATCTTCAGCGAAGT+AGG | 0.436417 | 7_4:-47897975 | None:intergenic |
| TTCTTATGGCTTCCTGGTGG+AGG | 0.438248 | 7_4:-47898537 | None:intergenic |
| AAAAGAAATCGAGGCAAATC+AGG | 0.447691 | 7_4:+47897263 | Msa1158490:CDS |
| ACAATGACTACTTATGAACT+TGG | 0.452092 | 7_4:-47899033 | None:intergenic |
| CTCATCTCATGGCTCTAAGA+AGG | 0.465613 | 7_4:+47897176 | Msa1158490:CDS |
| AGAAGTCTCTGAAGCTCAGC+GGG | 0.472014 | 7_4:-47896911 | None:intergenic |
| ACAGCAGACAAAGTACTGTA+TGG | 0.482924 | 7_4:+47897149 | Msa1158490:CDS |
| GGCACGACAAGCATATGAAC+TGG | 0.489720 | 7_4:+47897329 | Msa1158490:CDS |
| GTGGTAGTAATCTGCAAGTT+GGG | 0.493544 | 7_4:-47898978 | None:intergenic |
| AATATCCATAGGGATCATAT+AGG | 0.500491 | 7_4:-47898562 | None:intergenic |
| AGGGAAAGAGTTATATAAAG+AGG | 0.502813 | 7_4:-47899147 | None:intergenic |
| AACACAAGAGACAAGGTTCA+AGG | 0.514404 | 7_4:+47898942 | Msa1158490:CDS |
| TTGCTTGACTATTTGTGTGC+CGG | 0.515421 | 7_4:+47899214 | Msa1158490:three_prime_UTR |
| GAAGGCCTATATGATCCCTA+TGG | 0.521889 | 7_4:+47898557 | Msa1158490:CDS |
| TGTGGTAGTAATCTGCAAGT+TGG | 0.523029 | 7_4:-47898979 | None:intergenic |
| TGTATGGGATTCTCATCTCA+TGG | 0.523533 | 7_4:+47897165 | Msa1158490:CDS |
| TTCGCTGAAGATTTAAAGCA+AGG | 0.524497 | 7_4:+47897980 | Msa1158490:CDS |
| GACAGTGCCGAGGAGGTGAA+TGG | 0.529154 | 7_4:+47898896 | Msa1158490:intron |
| ATGGGTTGATCAATATCCAT+AGG | 0.533374 | 7_4:-47898573 | None:intergenic |
| AAAATGGCAATTGCACGCAC+TGG | 0.541228 | 7_4:+47896742 | Msa1158490:exon |
| TTAGGCCAACACATGAATAG+TGG | 0.541653 | 7_4:-47898921 | None:intergenic |
| TTGTGTTATATTAATTAATG+GGG | 0.543093 | 7_4:+47899106 | Msa1158490:three_prime_UTR |
| AAGCTCAGCGGGCAACGTGT+TGG | 0.546561 | 7_4:-47896900 | None:intergenic |
| TCCACCAGGAAGCCATAAGA+AGG | 0.548268 | 7_4:+47898539 | Msa1158490:CDS |
| CTAGGATTGGTCTGATGTGA+GGG | 0.548576 | 7_4:+47899338 | Msa1158490:three_prime_UTR |
| TAATAACAATTACATGAATG+AGG | 0.550580 | 7_4:+47897212 | Msa1158490:CDS |
| AAGATTTATCATTGACATTG+TGG | 0.551966 | 7_4:-47898997 | None:intergenic |
| TTCTTGCTTGTTCAGATACG+AGG | 0.559860 | 7_4:-47896651 | None:intergenic |
| TGGTTCCACTATTCATGTGT+TGG | 0.563319 | 7_4:+47898916 | Msa1158490:CDS |
| TAATCAAGTATCTTCGATTG+AGG | 0.567937 | 7_4:-47898477 | None:intergenic |
| AGACAAGGTTCAAGGGAAAG+TGG | 0.569480 | 7_4:+47898950 | Msa1158490:CDS |
| AACAAGCAAGAACACTTCTA+GGG | 0.569682 | 7_4:+47896662 | Msa1158490:five_prime_UTR |
| ACACAAGAGACAAGGTTCAA+GGG | 0.570451 | 7_4:+47898943 | Msa1158490:CDS |
| TTTATGCACTGCCACTGAGA+AGG | 0.570722 | 7_4:+47897299 | Msa1158490:CDS |
| TCCCTAAACCTGAAAAGCGC+AGG | 0.571245 | 7_4:+47898439 | Msa1158490:CDS |
| AGATACGAGGGAAGCGAAGG+TGG | 0.572623 | 7_4:-47896638 | None:intergenic |
| TTCAGATACGAGGGAAGCGA+AGG | 0.575671 | 7_4:-47896641 | None:intergenic |
| GCCTTCTTATGGCTTCCTGG+TGG | 0.577394 | 7_4:-47898540 | None:intergenic |
| AAAACGCTGTCGTATGAGCA+TGG | 0.580052 | 7_4:-47896612 | None:intergenic |
| GGATTTGAGTAGTATGCATG+AGG | 0.584568 | 7_4:+47899359 | Msa1158490:three_prime_UTR |
| TCATCTCATGGCTCTAAGAA+GGG | 0.589315 | 7_4:+47897177 | Msa1158490:CDS |
| ACTAGGATTGGTCTGATGTG+AGG | 0.590026 | 7_4:+47899337 | Msa1158490:three_prime_UTR |
| GAAAAGCGCAGGCACACATA+CGG | 0.591051 | 7_4:+47898450 | Msa1158490:CDS |
| CAGCAGACAAAGTACTGTAT+GGG | 0.594250 | 7_4:+47897150 | Msa1158490:CDS |
| TGGGTTGATCAATATCCATA+GGG | 0.596146 | 7_4:-47898572 | None:intergenic |
| GTTTAGGGACAATAGGCAGT+GGG | 0.598426 | 7_4:-47898425 | None:intergenic |
| GAGAAGTCTCTGAAGCTCAG+CGG | 0.598711 | 7_4:-47896912 | None:intergenic |
| TCGTTCATCGAGTTCACGAA+CGG | 0.599115 | 7_4:-47896939 | None:intergenic |
| TGATGACAAACACAGTATGT+AGG | 0.600981 | 7_4:-47898609 | None:intergenic |
| TTTGAGCTAATGCCTCCACC+AGG | 0.610776 | 7_4:+47898525 | Msa1158490:CDS |
| GGTTTAGGGACAATAGGCAG+TGG | 0.611343 | 7_4:-47898426 | None:intergenic |
| ATCGAAGATACTTGATTACA+GGG | 0.613736 | 7_4:+47898482 | Msa1158490:CDS |
| CCTTGACCAGAAAATGCACA+CGG | 0.614888 | 7_4:+47899167 | Msa1158490:three_prime_UTR |
| AGTGGAACCATTCACCTCCT+CGG | 0.620021 | 7_4:-47898903 | None:intergenic |
| TGATTACAGGGAGAGAGACT+GGG | 0.627646 | 7_4:+47898494 | Msa1158490:CDS |
| TTAGGGACAATAGGCAGTGG+GGG | 0.639302 | 7_4:-47898423 | None:intergenic |
| CCATGTAAAACGACTCGATG+AGG | 0.644400 | 7_4:+47897946 | Msa1158490:CDS |
| TATTCTTGACAGTGCCGAGG+AGG | 0.656230 | 7_4:+47898889 | Msa1158490:intron |
| TTTAGGGACAATAGGCAGTG+GGG | 0.660515 | 7_4:-47898424 | None:intergenic |
| TGTTATTCTTGACAGTGCCG+AGG | 0.662653 | 7_4:+47898886 | Msa1158490:intron |
| TCTTGCTTGTTCAGATACGA+GGG | 0.667668 | 7_4:-47896650 | None:intergenic |
| GAAAATGCGAAAAGAAATCG+AGG | 0.671856 | 7_4:+47897254 | Msa1158490:CDS |
| TTGGCCTAACACAAGAGACA+AGG | 0.699970 | 7_4:+47898935 | Msa1158490:CDS |
| TGCCAACAAAACCTTCTCAG+TGG | 0.710484 | 7_4:-47897310 | None:intergenic |
| GTGTGCCGGTTCACACCGTG+CGG | 0.710690 | 7_4:+47899228 | Msa1158490:three_prime_UTR |
| CTTGACCAGAAAATGCACAC+GGG | 0.719282 | 7_4:+47899168 | Msa1158490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATCATAATTTTTTGT+TGG | + | chr7_4:47897084-47897103 | Msa1158490:intron | 10.0% |
| !!! | TTTTTTTTTTTTAGCTTTTA+TGG | + | chr7_4:47897363-47897382 | Msa1158490:intron | 10.0% |
| !!! | TTTTATATATAGCATTTATA+AGG | + | chr7_4:47897400-47897419 | Msa1158490:intron | 10.0% |
| !! | CAATAATTATTCAATCAAAA+TGG | + | chr7_4:47896726-47896745 | Msa1158490:exon | 15.0% |
| !!! | TAATTTTAGGGTTAAAAAAA+GGG | - | chr7_4:47896993-47897012 | None:intergenic | 15.0% |
| !!! | ATAATTTTAGGGTTAAAAAA+AGG | - | chr7_4:47896994-47897013 | None:intergenic | 15.0% |
| !!! | TATTACTTTTTTTTTATCCT+TGG | + | chr7_4:47897011-47897030 | Msa1158490:CDS | 15.0% |
| !! | ATCAAATTTGAAAGAAAAAA+AGG | - | chr7_4:47898360-47898379 | None:intergenic | 15.0% |
| !! | GTTGTGTTATATTAATTAAT+GGG | + | chr7_4:47899105-47899124 | Msa1158490:three_prime_UTR | 15.0% |
| !! | TTGTGTTATATTAATTAATG+GGG | + | chr7_4:47899106-47899125 | Msa1158490:three_prime_UTR | 15.0% |
| !! | TTGCAATAGAAGAAATATTA+GGG | - | chr7_4:47896709-47896728 | None:intergenic | 20.0% |
| !! | ATTGCAATAGAAGAAATATT+AGG | - | chr7_4:47896710-47896729 | None:intergenic | 20.0% |
| !!! | TTTTAGTAGGAATTTACATT+GGG | - | chr7_4:47896966-47896985 | None:intergenic | 20.0% |
| !!! | TTTTTAGTAGGAATTTACAT+TGG | - | chr7_4:47896967-47896986 | None:intergenic | 20.0% |
| !!! | AAAAAAGGGAATTTTTTAGT+AGG | - | chr7_4:47896979-47896998 | None:intergenic | 20.0% |
| !! | TAATAACAATTACATGAATG+AGG | + | chr7_4:47897212-47897231 | Msa1158490:CDS | 20.0% |
| !!! | AAAGAGTATGTTCAATATTT+TGG | + | chr7_4:47898143-47898162 | Msa1158490:intron | 20.0% |
| !! | GAAAAAAAGGAAAATAAGAA+AGG | - | chr7_4:47898347-47898366 | None:intergenic | 20.0% |
| !!! | TTCAAATTTGATTTTATCAG+AGG | + | chr7_4:47898368-47898387 | Msa1158490:intron | 20.0% |
| !!! | TCAAATTTGATTTTATCAGA+GGG | + | chr7_4:47898369-47898388 | Msa1158490:intron | 20.0% |
| !! | GGTTGTGTTATATTAATTAA+TGG | + | chr7_4:47899104-47899123 | Msa1158490:three_prime_UTR | 20.0% |
| !! | AAATATTATCGAAAAACACT+AGG | + | chr7_4:47899320-47899339 | Msa1158490:three_prime_UTR | 20.0% |
| ! | CGTAGAGAATAGAAAATAAA+AGG | - | chr7_4:47896801-47896820 | None:intergenic | 25.0% |
| ! | AAAAATTGGGGGAAAAATTA+GGG | - | chr7_4:47896835-47896854 | None:intergenic | 25.0% |
| ! | AAAAATCCGTTGAAAAATTG+GGG | - | chr7_4:47896847-47896866 | None:intergenic | 25.0% |
| ! | GAAAAATCCGTTGAAAAATT+GGG | - | chr7_4:47896848-47896867 | None:intergenic | 25.0% |
| ! | TGAAAAATCCGTTGAAAAAT+TGG | - | chr7_4:47896849-47896868 | None:intergenic | 25.0% |
| ! | CATCTATGGAATAGAAAAAT+TGG | - | chr7_4:47896880-47896899 | None:intergenic | 25.0% |
| ! | AGATGCAATGATGTAAAAAT+GGG | - | chr7_4:47897051-47897070 | None:intergenic | 25.0% |
| ! | TAGATGCAATGATGTAAAAA+TGG | - | chr7_4:47897052-47897071 | None:intergenic | 25.0% |
| !!! | ATCATAATTTTTTGTTGGTG+TGG | + | chr7_4:47897089-47897108 | Msa1158490:intron | 25.0% |
| !!! | TTTTTTTAGCTTTTATGGCT+TGG | + | chr7_4:47897368-47897387 | Msa1158490:intron | 25.0% |
| ! | TAAATGATATCTGAAAGTAG+TGG | + | chr7_4:47897492-47897511 | Msa1158490:intron | 25.0% |
| ! | AGTTTATCACATTACCATTA+AGG | - | chr7_4:47897522-47897541 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATATTGCTTC+TGG | + | chr7_4:47897849-47897868 | Msa1158490:intron | 25.0% |
| ! | AAATCAGAATGCAAATCAAA+TGG | - | chr7_4:47898014-47898033 | None:intergenic | 25.0% |
| ! | AAGAAAGAGCAAAAGTAAAA+AGG | + | chr7_4:47898217-47898236 | Msa1158490:intron | 25.0% |
| !!! | CAAATTTGATTTTATCAGAG+GGG | + | chr7_4:47898370-47898389 | Msa1158490:intron | 25.0% |
| ! | AAGATTTATCATTGACATTG+TGG | - | chr7_4:47899000-47899019 | None:intergenic | 25.0% |
| AAATATTAGGGTTTGCGATT+GGG | - | chr7_4:47896697-47896716 | None:intergenic | 30.0% | |
| GAAAAATTGGGGGAAAAATT+AGG | - | chr7_4:47896836-47896855 | None:intergenic | 30.0% | |
| !! | TTTTTCCCCCAATTTTTCAA+CGG | + | chr7_4:47896838-47896857 | Msa1158490:intron | 30.0% |
| AAAATCCGTTGAAAAATTGG+GGG | - | chr7_4:47896846-47896865 | None:intergenic | 30.0% | |
| ! | TTCTTTTCGCATTTTCTCAA+TGG | - | chr7_4:47897250-47897269 | None:intergenic | 30.0% |
| ATTTATAAGGCTAGTATGTG+TGG | + | chr7_4:47897413-47897432 | Msa1158490:intron | 30.0% | |
| !! | ATTGCTTTAAGTTGTTTGAG+AGG | + | chr7_4:47897776-47897795 | Msa1158490:intron | 30.0% |
| TTGAAACTTAAGCTGTACAA+TGG | - | chr7_4:47897890-47897909 | None:intergenic | 30.0% | |
| CCAGATCATACTAATTGTAT+AGG | - | chr7_4:47898076-47898095 | None:intergenic | 30.0% | |
| CCTATACAATTAGTATGATC+TGG | + | chr7_4:47898073-47898092 | Msa1158490:intron | 30.0% | |
| AAGAGCAAAAGTAAAAAGGA+AGG | + | chr7_4:47898221-47898240 | Msa1158490:intron | 30.0% | |
| ! | AGTAAAAAGGAAGGTTCTTT+TGG | + | chr7_4:47898230-47898249 | Msa1158490:intron | 30.0% |
| !!! | GAAGGTTCTTTTGGAATTTA+GGG | + | chr7_4:47898239-47898258 | Msa1158490:intron | 30.0% |
| !!! | AAGGTTCTTTTGGAATTTAG+GGG | + | chr7_4:47898240-47898259 | Msa1158490:intron | 30.0% |
| AACAATTTCATTGACAAAGC+AGG | - | chr7_4:47898299-47898318 | None:intergenic | 30.0% | |
| TAATCAAGTATCTTCGATTG+AGG | - | chr7_4:47898480-47898499 | None:intergenic | 30.0% | |
| AATCGAAGATACTTGATTAC+AGG | + | chr7_4:47898481-47898500 | Msa1158490:CDS | 30.0% | |
| ATCGAAGATACTTGATTACA+GGG | + | chr7_4:47898482-47898501 | Msa1158490:CDS | 30.0% | |
| AATATCCATAGGGATCATAT+AGG | - | chr7_4:47898565-47898584 | None:intergenic | 30.0% | |
| ATATGACATAATTGTCCACA+AGG | - | chr7_4:47898683-47898702 | None:intergenic | 30.0% | |
| AGTCAGTTTACTGAAATTTC+AGG | + | chr7_4:47898727-47898746 | Msa1158490:intron | 30.0% | |
| !! | CTGAAATTTCAGGTATCTTT+TGG | + | chr7_4:47898737-47898756 | Msa1158490:intron | 30.0% |
| TCAAAATAGCAAAAGGAGAA+GGG | - | chr7_4:47898853-47898872 | None:intergenic | 30.0% | |
| AACTCAGTCAAAATAGCAAA+AGG | - | chr7_4:47898860-47898879 | None:intergenic | 30.0% | |
| ACAATGACTACTTATGAACT+TGG | - | chr7_4:47899036-47899055 | None:intergenic | 30.0% | |
| ! | AGTGAATGCATGCATAATTT+TGG | + | chr7_4:47899081-47899100 | Msa1158490:three_prime_UTR | 30.0% |
| ! | GTGAATGCATGCATAATTTT+GGG | + | chr7_4:47899082-47899101 | Msa1158490:three_prime_UTR | 30.0% |
| ! | TGAATGCATGCATAATTTTG+GGG | + | chr7_4:47899083-47899102 | Msa1158490:three_prime_UTR | 30.0% |
| AGGGAAAGAGTTATATAAAG+AGG | - | chr7_4:47899150-47899169 | None:intergenic | 30.0% | |
| TTATCGAAAAACACTAGGAT+TGG | + | chr7_4:47899325-47899344 | Msa1158490:three_prime_UTR | 30.0% | |
| AACAAGCAAGAACACTTCTA+GGG | + | chr7_4:47896662-47896681 | Msa1158490:five_prime_UTR | 35.0% | |
| GAAATATTAGGGTTTGCGAT+TGG | - | chr7_4:47896698-47896717 | None:intergenic | 35.0% | |
| GGGTAATTTCATATCAACCA+AGG | - | chr7_4:47897031-47897050 | None:intergenic | 35.0% | |
| GAAAATGCGAAAAGAAATCG+AGG | + | chr7_4:47897254-47897273 | Msa1158490:CDS | 35.0% | |
| AAAAGAAATCGAGGCAAATC+AGG | + | chr7_4:47897263-47897282 | Msa1158490:CDS | 35.0% | |
| GTTCAGAAATGTAAAACCCT+TGG | - | chr7_4:47897459-47897478 | None:intergenic | 35.0% | |
| !! | AAAGTAGTGGATTGCCTTAA+TGG | + | chr7_4:47897505-47897524 | Msa1158490:intron | 35.0% |
| ATGCATAACCAGAAGCAATA+TGG | - | chr7_4:47897860-47897879 | None:intergenic | 35.0% | |
| CTTTAAATCTTCAGCGAAGT+AGG | - | chr7_4:47897978-47897997 | None:intergenic | 35.0% | |
| ! | TTCGCTGAAGATTTAAAGCA+AGG | + | chr7_4:47897980-47897999 | Msa1158490:CDS | 35.0% |
| CATTACATGCTTCTTTAGAC+AGG | - | chr7_4:47898182-47898201 | None:intergenic | 35.0% | |
| !!! | GGAAGGTTCTTTTGGAATTT+AGG | + | chr7_4:47898238-47898257 | Msa1158490:intron | 35.0% |
| CATTGACAAAGCAGGAAAAA+GGG | - | chr7_4:47898291-47898310 | None:intergenic | 35.0% | |
| TCATTGACAAAGCAGGAAAA+AGG | - | chr7_4:47898292-47898311 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTTTAGGGACAAT+AGG | - | chr7_4:47898435-47898454 | None:intergenic | 35.0% |
| !! | TGGGTTGATCAATATCCATA+GGG | - | chr7_4:47898575-47898594 | None:intergenic | 35.0% |
| !! | ATGGGTTGATCAATATCCAT+AGG | - | chr7_4:47898576-47898595 | None:intergenic | 35.0% |
| GTAGGTTCATTTGGATCAAT+GGG | - | chr7_4:47898594-47898613 | None:intergenic | 35.0% | |
| TGTAGGTTCATTTGGATCAA+TGG | - | chr7_4:47898595-47898614 | None:intergenic | 35.0% | |
| ACACAGTATGTAGGTTCATT+TGG | - | chr7_4:47898603-47898622 | None:intergenic | 35.0% | |
| TGATGACAAACACAGTATGT+AGG | - | chr7_4:47898612-47898631 | None:intergenic | 35.0% | |
| TACATACTGTGTTTGTCATC+AGG | + | chr7_4:47898611-47898630 | Msa1158490:CDS | 35.0% | |
| AAAATAGCAAAAGGAGAAGG+GGG | - | chr7_4:47898851-47898870 | None:intergenic | 35.0% | |
| CAAAATAGCAAAAGGAGAAG+GGG | - | chr7_4:47898852-47898871 | None:intergenic | 35.0% | |
| GTCAAAATAGCAAAAGGAGA+AGG | - | chr7_4:47898854-47898873 | None:intergenic | 35.0% | |
| ACTTATGAACTTGGTTCAAC+TGG | - | chr7_4:47899027-47899046 | None:intergenic | 35.0% | |
| TCTTGCTTGTTCAGATACGA+GGG | - | chr7_4:47896653-47896672 | None:intergenic | 40.0% | |
| TTCTTGCTTGTTCAGATACG+AGG | - | chr7_4:47896654-47896673 | None:intergenic | 40.0% | |
| GAACAAGCAAGAACACTTCT+AGG | + | chr7_4:47896661-47896680 | Msa1158490:five_prime_UTR | 40.0% | |
| AGTCTACGTCGATGACTATT+TGG | + | chr7_4:47896765-47896784 | Msa1158490:CDS | 40.0% | |
| TGGGGGAAAAATTAGGGTTA+GGG | - | chr7_4:47896829-47896848 | None:intergenic | 40.0% | |
| TTGGGGGAAAAATTAGGGTT+AGG | - | chr7_4:47896830-47896849 | None:intergenic | 40.0% | |
| !! | ACAGCAGACAAAGTACTGTA+TGG | + | chr7_4:47897149-47897168 | Msa1158490:CDS | 40.0% |
| !! | CAGCAGACAAAGTACTGTAT+GGG | + | chr7_4:47897150-47897169 | Msa1158490:CDS | 40.0% |
| TGTATGGGATTCTCATCTCA+TGG | + | chr7_4:47897165-47897184 | Msa1158490:CDS | 40.0% | |
| !! | TCATCTCATGGCTCTAAGAA+GGG | + | chr7_4:47897177-47897196 | Msa1158490:CDS | 40.0% |
| !! | CTTTTATGGCTTGGACAAGA+GGG | + | chr7_4:47897377-47897396 | Msa1158490:intron | 40.0% |
| ATGATTGCAGCTCCTATCTT+GGG | + | chr7_4:47897817-47897836 | Msa1158490:intron | 40.0% | |
| ATTCACATGACTCCCAAGAT+AGG | - | chr7_4:47897832-47897851 | None:intergenic | 40.0% | |
| AGCAGGAAAAAGGGAATTTC+CGG | - | chr7_4:47898282-47898301 | None:intergenic | 40.0% | |
| GGATCATATAGGCCTTCTTA+TGG | - | chr7_4:47898554-47898573 | None:intergenic | 40.0% | |
| ! | TACAGTTTCAAGTCTCCTTG+TGG | + | chr7_4:47898665-47898684 | Msa1158490:intron | 40.0% |
| AAATAGCAAAAGGAGAAGGG+GGG | - | chr7_4:47898850-47898869 | None:intergenic | 40.0% | |
| TGGTTCCACTATTCATGTGT+TGG | + | chr7_4:47898916-47898935 | Msa1158490:CDS | 40.0% | |
| TTAGGCCAACACATGAATAG+TGG | - | chr7_4:47898924-47898943 | None:intergenic | 40.0% | |
| TGAACCTTGTCTCTTGTGTT+AGG | - | chr7_4:47898942-47898961 | None:intergenic | 40.0% | |
| AACACAAGAGACAAGGTTCA+AGG | + | chr7_4:47898942-47898961 | Msa1158490:CDS | 40.0% | |
| ACACAAGAGACAAGGTTCAA+GGG | + | chr7_4:47898943-47898962 | Msa1158490:CDS | 40.0% | |
| GTGGTAGTAATCTGCAAGTT+GGG | - | chr7_4:47898981-47899000 | None:intergenic | 40.0% | |
| TGTGGTAGTAATCTGCAAGT+TGG | - | chr7_4:47898982-47899001 | None:intergenic | 40.0% | |
| TTGCTTGACTATTTGTGTGC+CGG | + | chr7_4:47899214-47899233 | Msa1158490:three_prime_UTR | 40.0% | |
| GGATTTGAGTAGTATGCATG+AGG | + | chr7_4:47899359-47899378 | Msa1158490:three_prime_UTR | 40.0% | |
| AAAACGCTGTCGTATGAGCA+TGG | - | chr7_4:47896615-47896634 | None:intergenic | 45.0% | |
| AAAATGGCAATTGCACGCAC+TGG | + | chr7_4:47896742-47896761 | Msa1158490:exon | 45.0% | |
| TCGTTCATCGAGTTCACGAA+CGG | - | chr7_4:47896942-47896961 | None:intergenic | 45.0% | |
| ACAGTACTTTGTCTGCTGTC+TGG | - | chr7_4:47897148-47897167 | None:intergenic | 45.0% | |
| !! | CTCATCTCATGGCTCTAAGA+AGG | + | chr7_4:47897176-47897195 | Msa1158490:CDS | 45.0% |
| TTTATGCACTGCCACTGAGA+AGG | + | chr7_4:47897299-47897318 | Msa1158490:CDS | 45.0% | |
| !! | TGCCACTGAGAAGGTTTTGT+TGG | + | chr7_4:47897308-47897327 | Msa1158490:CDS | 45.0% |
| TGCCAACAAAACCTTCTCAG+TGG | - | chr7_4:47897313-47897332 | None:intergenic | 45.0% | |
| !! | GCTTTTATGGCTTGGACAAG+AGG | + | chr7_4:47897376-47897395 | Msa1158490:intron | 45.0% |
| ! | TGTGGATTACTGCTGCAACA+AGG | + | chr7_4:47897431-47897450 | Msa1158490:intron | 45.0% |
| ! | GTGGATTACTGCTGCAACAA+GGG | + | chr7_4:47897432-47897451 | Msa1158490:intron | 45.0% |
| TGGATTACTGCTGCAACAAG+GGG | + | chr7_4:47897433-47897452 | Msa1158490:intron | 45.0% | |
| GAGCTGCAATCATCTAGTCA+AGG | - | chr7_4:47897810-47897829 | None:intergenic | 45.0% | |
| GATGATTGCAGCTCCTATCT+TGG | + | chr7_4:47897816-47897835 | Msa1158490:intron | 45.0% | |
| !! | CCTCATCGAGTCGTTTTACA+TGG | - | chr7_4:47897949-47897968 | None:intergenic | 45.0% |
| CCATGTAAAACGACTCGATG+AGG | + | chr7_4:47897946-47897965 | Msa1158490:CDS | 45.0% | |
| !!! | GGGTATGTTTTTTCGTACCC+CGG | + | chr7_4:47898260-47898279 | Msa1158490:intron | 45.0% |
| CAGGAAAAAGGGAATTTCCG+GGG | - | chr7_4:47898280-47898299 | None:intergenic | 45.0% | |
| GCAGGAAAAAGGGAATTTCC+GGG | - | chr7_4:47898281-47898300 | None:intergenic | 45.0% | |
| TTTAGGGACAATAGGCAGTG+GGG | - | chr7_4:47898427-47898446 | None:intergenic | 45.0% | |
| GTTTAGGGACAATAGGCAGT+GGG | - | chr7_4:47898428-47898447 | None:intergenic | 45.0% | |
| TTGATTACAGGGAGAGAGAC+TGG | + | chr7_4:47898493-47898512 | Msa1158490:CDS | 45.0% | |
| TGATTACAGGGAGAGAGACT+GGG | + | chr7_4:47898494-47898513 | Msa1158490:CDS | 45.0% | |
| GAAGGCCTATATGATCCCTA+TGG | + | chr7_4:47898557-47898576 | Msa1158490:CDS | 45.0% | |
| TGTTATTCTTGACAGTGCCG+AGG | + | chr7_4:47898886-47898905 | Msa1158490:intron | 45.0% | |
| TTGGCCTAACACAAGAGACA+AGG | + | chr7_4:47898935-47898954 | Msa1158490:CDS | 45.0% | |
| AGACAAGGTTCAAGGGAAAG+TGG | + | chr7_4:47898950-47898969 | Msa1158490:CDS | 45.0% | |
| !! | CGTGTGCATTTTCTGGTCAA+GGG | - | chr7_4:47899169-47899188 | None:intergenic | 45.0% |
| CCTTGACCAGAAAATGCACA+CGG | + | chr7_4:47899167-47899186 | Msa1158490:three_prime_UTR | 45.0% | |
| CTTGACCAGAAAATGCACAC+GGG | + | chr7_4:47899168-47899187 | Msa1158490:three_prime_UTR | 45.0% | |
| ! | CAAATCCCGTGTGCATTTTC+TGG | - | chr7_4:47899176-47899195 | None:intergenic | 45.0% |
| !! | ACTAGGATTGGTCTGATGTG+AGG | + | chr7_4:47899337-47899356 | Msa1158490:three_prime_UTR | 45.0% |
| !! | CTAGGATTGGTCTGATGTGA+GGG | + | chr7_4:47899338-47899357 | Msa1158490:three_prime_UTR | 45.0% |
| !!! | AAAAAAAAGTAATAATTTTA+GGG | - | chr7_4:47897005-47897024 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAGTAATAATTTT+AGG | - | chr7_4:47897006-47897025 | None:intergenic | 5.0% |
| TTCAGATACGAGGGAAGCGA+AGG | - | chr7_4:47896644-47896663 | None:intergenic | 50.0% | |
| !! | AGAAGTCTCTGAAGCTCAGC+GGG | - | chr7_4:47896914-47896933 | None:intergenic | 50.0% |
| !! | GAGAAGTCTCTGAAGCTCAG+CGG | - | chr7_4:47896915-47896934 | None:intergenic | 50.0% |
| ACTTTGTCTGCTGTCTGGTC+TGG | - | chr7_4:47897143-47897162 | None:intergenic | 50.0% | |
| GGCACGACAAGCATATGAAC+TGG | + | chr7_4:47897329-47897348 | Msa1158490:CDS | 50.0% | |
| TTAGGGACAATAGGCAGTGG+GGG | - | chr7_4:47898426-47898445 | None:intergenic | 50.0% | |
| GGTTTAGGGACAATAGGCAG+TGG | - | chr7_4:47898429-47898448 | None:intergenic | 50.0% | |
| ! | TCCCTAAACCTGAAAAGCGC+AGG | + | chr7_4:47898439-47898458 | Msa1158490:CDS | 50.0% |
| !!! | GCCTGCGCTTTTCAGGTTTA+GGG | - | chr7_4:47898443-47898462 | None:intergenic | 50.0% |
| !!! | TGCCTGCGCTTTTCAGGTTT+AGG | - | chr7_4:47898444-47898463 | None:intergenic | 50.0% |
| ! | TATGTGTGCCTGCGCTTTTC+AGG | - | chr7_4:47898450-47898469 | None:intergenic | 50.0% |
| ! | GAAAAGCGCAGGCACACATA+CGG | + | chr7_4:47898450-47898469 | Msa1158490:CDS | 50.0% |
| TTTGAGCTAATGCCTCCACC+AGG | + | chr7_4:47898525-47898544 | Msa1158490:CDS | 50.0% | |
| TTCTTATGGCTTCCTGGTGG+AGG | - | chr7_4:47898540-47898559 | None:intergenic | 50.0% | |
| TCCACCAGGAAGCCATAAGA+AGG | + | chr7_4:47898539-47898558 | Msa1158490:CDS | 50.0% | |
| TAGGCCTTCTTATGGCTTCC+TGG | - | chr7_4:47898546-47898565 | None:intergenic | 50.0% | |
| CAAAAGGAGAAGGGGGGAAA+AGG | - | chr7_4:47898844-47898863 | None:intergenic | 50.0% | |
| ! | TATTCTTGACAGTGCCGAGG+AGG | + | chr7_4:47898889-47898908 | Msa1158490:intron | 50.0% |
| AGTGGAACCATTCACCTCCT+CGG | - | chr7_4:47898906-47898925 | None:intergenic | 50.0% | |
| !! | CCGTGTGCATTTTCTGGTCA+AGG | - | chr7_4:47899170-47899189 | None:intergenic | 50.0% |
| AGATACGAGGGAAGCGAAGG+TGG | - | chr7_4:47896641-47896660 | None:intergenic | 55.0% | |
| ! | GGGCAACGTGTTGGCATCTA+TGG | - | chr7_4:47896894-47896913 | None:intergenic | 55.0% |
| GCCTTCTTATGGCTTCCTGG+TGG | - | chr7_4:47898543-47898562 | None:intergenic | 55.0% | |
| ATGTCATCACTGTCGCCGCA+CGG | - | chr7_4:47899246-47899265 | None:intergenic | 55.0% | |
| AAGCTCAGCGGGCAACGTGT+TGG | - | chr7_4:47896903-47896922 | None:intergenic | 60.0% | |
| ACTGCTGCAACAAGGGGCCA+AGG | + | chr7_4:47897439-47897458 | Msa1158490:intron | 60.0% | |
| CTGCTGCAACAAGGGGCCAA+GGG | + | chr7_4:47897440-47897459 | Msa1158490:intron | 60.0% | |
| GGCAGTGGGGGAAGAATTGC+TGG | - | chr7_4:47898414-47898433 | None:intergenic | 60.0% | |
| ! | GACAGTGCCGAGGAGGTGAA+TGG | + | chr7_4:47898896-47898915 | Msa1158490:intron | 60.0% |
| !! | GTGTGCCGGTTCACACCGTG+CGG | + | chr7_4:47899228-47899247 | Msa1158490:three_prime_UTR | 65.0% |
| TGTCGCCGCACGGTGTGAAC+CGG | - | chr7_4:47899236-47899255 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 47896596 | 47899392 | 47896596 | ID=Msa1158490;Name=Msa1158490 |
| chr7_4 | mRNA | 47896596 | 47899392 | 47896596 | ID=Msa1158490-mRNA-1;Parent=Msa1158490;Name=Msa1158490-mRNA-1;_AED=0.22;_eAED=0.22;_QI=149|0.83|0.85|1|0.66|0.42|7|381|286 |
| chr7_4 | exon | 47896596 | 47896790 | 47896596 | ID=Msa1158490-mRNA-1:exon:12834;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47896897 | 47897032 | 47896897 | ID=Msa1158490-mRNA-1:exon:12835;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47897131 | 47897350 | 47897131 | ID=Msa1158490-mRNA-1:exon:12836;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47897938 | 47898001 | 47897938 | ID=Msa1158490-mRNA-1:exon:12837;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47898388 | 47898632 | 47898388 | ID=Msa1158490-mRNA-1:exon:12838;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47898749 | 47898787 | 47898749 | ID=Msa1158490-mRNA-1:exon:12839;Parent=Msa1158490-mRNA-1 |
| chr7_4 | exon | 47898901 | 47899392 | 47898901 | ID=Msa1158490-mRNA-1:exon:12840;Parent=Msa1158490-mRNA-1 |
| chr7_4 | five_prime_UTR | 47896596 | 47896744 | 47896596 | ID=Msa1158490-mRNA-1:five_prime_utr;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47896745 | 47896790 | 47896745 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47896897 | 47897032 | 47896897 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47897131 | 47897350 | 47897131 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47897938 | 47898001 | 47897938 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47898388 | 47898632 | 47898388 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47898749 | 47898787 | 47898749 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | CDS | 47898901 | 47899011 | 47898901 | ID=Msa1158490-mRNA-1:cds;Parent=Msa1158490-mRNA-1 |
| chr7_4 | three_prime_UTR | 47899012 | 47899392 | 47899012 | ID=Msa1158490-mRNA-1:three_prime_utr;Parent=Msa1158490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
