Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170200 | XP_003624615.1 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170200 | sp|B3H615|ING2_ARATH | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.70e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170200 | A2Q5P5 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1170200 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1158490 | Msa1170200 | 0.844330 | 8.084314e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170200 | MtrunA17_Chr7g0253141 | 89.510 | 286 | 7 | 2 | 1 | 286 | 1 | 263 | 0.0 | 523 |
| Msa1170200 | MtrunA17_Chr1g0169261 | 36.111 | 180 | 103 | 4 | 104 | 279 | 66 | 237 | 4.07e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170200 | AT1G54390.4 | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.77e-131 | 373 |
| Msa1170200 | AT1G54390.3 | 72.028 | 286 | 52 | 7 | 1 | 284 | 1 | 260 | 3.77e-131 | 373 |
| Msa1170200 | AT1G54390.7 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1170200 | AT1G54390.8 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1170200 | AT1G54390.5 | 70.204 | 245 | 60 | 7 | 48 | 284 | 1 | 240 | 2.07e-107 | 311 |
| Msa1170200 | AT1G54390.1 | 70.635 | 252 | 46 | 7 | 1 | 250 | 1 | 226 | 2.61e-101 | 298 |
| Msa1170200 | AT1G54390.2 | 69.841 | 252 | 48 | 7 | 1 | 250 | 1 | 226 | 2.91e-101 | 299 |
| Msa1170200 | AT1G54390.6 | 80.328 | 183 | 30 | 4 | 104 | 284 | 1 | 179 | 9.91e-95 | 277 |
| Msa1170200 | AT3G24010.1 | 38.012 | 171 | 90 | 4 | 109 | 279 | 70 | 224 | 1.91e-28 | 109 |
Find 89 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAATGCATGCATAATTT+TGG | 0.118953 | 7_4:-63349607 | Msa1170200:three_prime_UTR |
| CTGAAATTTCAGGTATCTTT+TGG | 0.176968 | 7_4:-63349951 | Msa1170200:intron |
| ATTGCAATAGAAGAAATATT+AGG | 0.213878 | 7_4:+63351980 | None:intergenic |
| GGTTGTGTTATATTAATTAA+TGG | 0.219226 | 7_4:-63349584 | Msa1170200:three_prime_UTR |
| GAACAAGCAAGAACACTTCT+AGG | 0.279202 | 7_4:-63352026 | Msa1170200:five_prime_UTR |
| CAATAATTATTCAATCAAAA+TGG | 0.287942 | 7_4:-63351961 | Msa1170200:exon |
| TGAACCTTGTCTCTTGTGTT+AGG | 0.290251 | 7_4:+63349749 | None:intergenic |
| GTTGTGTTATATTAATTAAT+GGG | 0.307987 | 7_4:-63349583 | Msa1170200:three_prime_UTR |
| TAGGCCTTCTTATGGCTTCC+TGG | 0.308667 | 7_4:+63350145 | None:intergenic |
| TTGCAATAGAAGAAATATTA+GGG | 0.310592 | 7_4:+63351981 | None:intergenic |
| AATCGAAGATACTTGATTAC+AGG | 0.314016 | 7_4:-63350207 | Msa1170200:CDS |
| AGTCTACGTCGATGACTATT+TGG | 0.315508 | 7_4:-63351922 | Msa1170200:CDS |
| ACACAGTATGTAGGTTCATT+TGG | 0.368463 | 7_4:+63350088 | None:intergenic |
| ACTTATGAACTTGGTTCAAC+TGG | 0.370387 | 7_4:+63349664 | None:intergenic |
| TGTAGGTTCATTTGGATCAA+TGG | 0.378225 | 7_4:+63350096 | None:intergenic |
| GGATCATATAGGCCTTCTTA+TGG | 0.390081 | 7_4:+63350137 | None:intergenic |
| ACTTTGTCTGCTGTCTGGTC+TGG | 0.412875 | 7_4:+63351547 | None:intergenic |
| GTAGGTTCATTTGGATCAAT+GGG | 0.417965 | 7_4:+63350097 | None:intergenic |
| AAATATTAGGGTTTGCGATT+GGG | 0.421821 | 7_4:+63351993 | None:intergenic |
| TACATACTGTGTTTGTCATC+AGG | 0.423437 | 7_4:-63350077 | Msa1170200:intron |
| GAAATATTAGGGTTTGCGAT+TGG | 0.424049 | 7_4:+63351992 | None:intergenic |
| ACAGTACTTTGTCTGCTGTC+TGG | 0.430662 | 7_4:+63351542 | None:intergenic |
| TTGATTACAGGGAGAGAGAC+TGG | 0.434912 | 7_4:-63350195 | Msa1170200:CDS |
| CTTTAAATCTTCAGCGAAGT+AGG | 0.436417 | 7_4:+63350712 | None:intergenic |
| TTCTTATGGCTTCCTGGTGG+AGG | 0.438248 | 7_4:+63350151 | None:intergenic |
| AAAAGAAATCGAGGCAAATC+AGG | 0.447691 | 7_4:-63351424 | Msa1170200:CDS |
| ACAATGACTACTTATGAACT+TGG | 0.452092 | 7_4:+63349655 | None:intergenic |
| CTCATCTCATGGCTCTAAGA+AGG | 0.465613 | 7_4:-63351511 | Msa1170200:CDS |
| AGAAGTCTCTGAAGCTCAGC+GGG | 0.472014 | 7_4:+63351776 | None:intergenic |
| ACAGCAGACAAAGTACTGTA+TGG | 0.482924 | 7_4:-63351538 | Msa1170200:CDS |
| GGCACGACAAGCATATGAAC+TGG | 0.489720 | 7_4:-63351358 | Msa1170200:intron |
| GTGGTAGTAATCTGCAAGTT+GGG | 0.493544 | 7_4:+63349710 | None:intergenic |
| AATATCCATAGGGATCATAT+AGG | 0.500491 | 7_4:+63350126 | None:intergenic |
| AGGGAAAGAGTTATATAAAG+AGG | 0.502813 | 7_4:+63349541 | None:intergenic |
| AACACAAGAGACAAGGTTCA+AGG | 0.514404 | 7_4:-63349746 | Msa1170200:CDS |
| TTGCTTGACTATTTGTGTGC+CGG | 0.515421 | 7_4:-63349474 | Msa1170200:three_prime_UTR |
| GAAGGCCTATATGATCCCTA+TGG | 0.521889 | 7_4:-63350131 | Msa1170200:CDS |
| TGTGGTAGTAATCTGCAAGT+TGG | 0.523029 | 7_4:+63349709 | None:intergenic |
| TGTATGGGATTCTCATCTCA+TGG | 0.523533 | 7_4:-63351522 | Msa1170200:CDS |
| TTCGCTGAAGATTTAAAGCA+AGG | 0.524497 | 7_4:-63350707 | Msa1170200:intron |
| GACAGTGCCGAGGAGGTGAA+TGG | 0.529154 | 7_4:-63349792 | Msa1170200:intron |
| ATGGGTTGATCAATATCCAT+AGG | 0.533374 | 7_4:+63350115 | None:intergenic |
| AAAATGGCAATTGCACGCAC+TGG | 0.541228 | 7_4:-63351945 | Msa1170200:CDS |
| TTAGGCCAACACATGAATAG+TGG | 0.541653 | 7_4:+63349767 | None:intergenic |
| TTGTGTTATATTAATTAATG+GGG | 0.543093 | 7_4:-63349582 | Msa1170200:three_prime_UTR |
| AAGCTCAGCGGGCAACGTGT+TGG | 0.546561 | 7_4:+63351787 | None:intergenic |
| TCCACCAGGAAGCCATAAGA+AGG | 0.548268 | 7_4:-63350149 | Msa1170200:CDS |
| CTAGGATTGGTCTGATGTGA+GGG | 0.548576 | 7_4:-63349350 | Msa1170200:three_prime_UTR |
| TAATAACAATTACATGAATG+AGG | 0.550580 | 7_4:-63351475 | Msa1170200:CDS |
| AAGATTTATCATTGACATTG+TGG | 0.551966 | 7_4:+63349691 | None:intergenic |
| TTCTTGCTTGTTCAGATACG+AGG | 0.559860 | 7_4:+63352036 | None:intergenic |
| TGGTTCCACTATTCATGTGT+TGG | 0.563319 | 7_4:-63349772 | Msa1170200:CDS |
| TAATCAAGTATCTTCGATTG+AGG | 0.567937 | 7_4:+63350211 | None:intergenic |
| AGACAAGGTTCAAGGGAAAG+TGG | 0.569480 | 7_4:-63349738 | Msa1170200:CDS |
| AACAAGCAAGAACACTTCTA+GGG | 0.569682 | 7_4:-63352025 | Msa1170200:five_prime_UTR |
| ACACAAGAGACAAGGTTCAA+GGG | 0.570451 | 7_4:-63349745 | Msa1170200:CDS |
| TTTATGCACTGCCACTGAGA+AGG | 0.570722 | 7_4:-63351388 | Msa1170200:CDS |
| TCCCTAAACCTGAAAAGCGC+AGG | 0.571245 | 7_4:-63350249 | Msa1170200:CDS |
| AGATACGAGGGAAGCGAAGG+TGG | 0.572623 | 7_4:+63352049 | None:intergenic |
| TTCAGATACGAGGGAAGCGA+AGG | 0.575671 | 7_4:+63352046 | None:intergenic |
| GCCTTCTTATGGCTTCCTGG+TGG | 0.577394 | 7_4:+63350148 | None:intergenic |
| AAAACGCTGTCGTATGAGCA+TGG | 0.580052 | 7_4:+63352075 | None:intergenic |
| GGATTTGAGTAGTATGCATG+AGG | 0.584568 | 7_4:-63349329 | Msa1170200:three_prime_UTR |
| TCATCTCATGGCTCTAAGAA+GGG | 0.589315 | 7_4:-63351510 | Msa1170200:CDS |
| ACTAGGATTGGTCTGATGTG+AGG | 0.590026 | 7_4:-63349351 | Msa1170200:three_prime_UTR |
| GAAAAGCGCAGGCACACATA+CGG | 0.591051 | 7_4:-63350238 | Msa1170200:CDS |
| CAGCAGACAAAGTACTGTAT+GGG | 0.594250 | 7_4:-63351537 | Msa1170200:CDS |
| TGGGTTGATCAATATCCATA+GGG | 0.596146 | 7_4:+63350116 | None:intergenic |
| GTTTAGGGACAATAGGCAGT+GGG | 0.598426 | 7_4:+63350263 | None:intergenic |
| GAGAAGTCTCTGAAGCTCAG+CGG | 0.598711 | 7_4:+63351775 | None:intergenic |
| TCGTTCATCGAGTTCACGAA+CGG | 0.599115 | 7_4:+63351748 | None:intergenic |
| TGATGACAAACACAGTATGT+AGG | 0.600981 | 7_4:+63350079 | None:intergenic |
| TTTGAGCTAATGCCTCCACC+AGG | 0.610776 | 7_4:-63350163 | Msa1170200:CDS |
| GGTTTAGGGACAATAGGCAG+TGG | 0.611343 | 7_4:+63350262 | None:intergenic |
| ATCGAAGATACTTGATTACA+GGG | 0.613736 | 7_4:-63350206 | Msa1170200:CDS |
| CCTTGACCAGAAAATGCACA+CGG | 0.614888 | 7_4:-63349521 | Msa1170200:three_prime_UTR |
| AGTGGAACCATTCACCTCCT+CGG | 0.620021 | 7_4:+63349785 | None:intergenic |
| TGATTACAGGGAGAGAGACT+GGG | 0.627646 | 7_4:-63350194 | Msa1170200:CDS |
| TTAGGGACAATAGGCAGTGG+GGG | 0.639302 | 7_4:+63350265 | None:intergenic |
| CCATGTAAAACGACTCGATG+AGG | 0.644400 | 7_4:-63350741 | Msa1170200:CDS |
| TATTCTTGACAGTGCCGAGG+AGG | 0.656230 | 7_4:-63349799 | Msa1170200:intron |
| TTTAGGGACAATAGGCAGTG+GGG | 0.660515 | 7_4:+63350264 | None:intergenic |
| TGTTATTCTTGACAGTGCCG+AGG | 0.662653 | 7_4:-63349802 | Msa1170200:intron |
| TCTTGCTTGTTCAGATACGA+GGG | 0.667668 | 7_4:+63352037 | None:intergenic |
| GAAAATGCGAAAAGAAATCG+AGG | 0.671856 | 7_4:-63351433 | Msa1170200:CDS |
| TTGGCCTAACACAAGAGACA+AGG | 0.699970 | 7_4:-63349753 | Msa1170200:CDS |
| TGCCAACAAAACCTTCTCAG+TGG | 0.710484 | 7_4:+63351377 | None:intergenic |
| GTGTGCCGGTTCACACCGTG+CGG | 0.710690 | 7_4:-63349460 | Msa1170200:three_prime_UTR |
| CTTGACCAGAAAATGCACAC+GGG | 0.719282 | 7_4:-63349520 | Msa1170200:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATCATAATTTTTTGT+TGG | - | chr7_4:63349806-63349825 | Msa1170200:intron | 10.0% |
| !!! | TTTTTTTTTTTTAGCTTTTA+TGG | - | chr7_4:63350085-63350104 | Msa1170200:CDS | 10.0% |
| !!! | TTTTATATATAGCATTTATA+AGG | - | chr7_4:63350122-63350141 | Msa1170200:CDS | 10.0% |
| !! | CAATAATTATTCAATCAAAA+TGG | - | chr7_4:63349448-63349467 | Msa1170200:three_prime_UTR | 15.0% |
| !!! | TAATTTTAGGGTTAAAAAAA+GGG | + | chr7_4:63349715-63349734 | None:intergenic | 15.0% |
| !!! | ATAATTTTAGGGTTAAAAAA+AGG | + | chr7_4:63349716-63349735 | None:intergenic | 15.0% |
| !!! | TATTACTTTTTTTTTATCCT+TGG | - | chr7_4:63349733-63349752 | Msa1170200:CDS | 15.0% |
| !! | ATCAAATTTGAAAGAAAAAA+AGG | + | chr7_4:63351081-63351100 | None:intergenic | 15.0% |
| !! | GTTGTGTTATATTAATTAAT+GGG | - | chr7_4:63351826-63351845 | Msa1170200:intron | 15.0% |
| !! | TTGTGTTATATTAATTAATG+GGG | - | chr7_4:63351827-63351846 | Msa1170200:intron | 15.0% |
| !! | TTGCAATAGAAGAAATATTA+GGG | + | chr7_4:63349431-63349450 | None:intergenic | 20.0% |
| !! | ATTGCAATAGAAGAAATATT+AGG | + | chr7_4:63349432-63349451 | None:intergenic | 20.0% |
| !!! | TTTTAGTAGGAATTTACATT+GGG | + | chr7_4:63349688-63349707 | None:intergenic | 20.0% |
| !!! | TTTTTAGTAGGAATTTACAT+TGG | + | chr7_4:63349689-63349708 | None:intergenic | 20.0% |
| !!! | AAAAAAGGGAATTTTTTAGT+AGG | + | chr7_4:63349701-63349720 | None:intergenic | 20.0% |
| !! | TAATAACAATTACATGAATG+AGG | - | chr7_4:63349934-63349953 | Msa1170200:CDS | 20.0% |
| !!! | AAAGAGTATGTTCAATATTT+TGG | - | chr7_4:63350865-63350884 | Msa1170200:intron | 20.0% |
| !! | GAAAAAAAGGAAAATAAGAA+AGG | + | chr7_4:63351068-63351087 | None:intergenic | 20.0% |
| !!! | TTCAAATTTGATTTTATCAG+AGG | - | chr7_4:63351089-63351108 | Msa1170200:intron | 20.0% |
| !!! | TCAAATTTGATTTTATCAGA+GGG | - | chr7_4:63351090-63351109 | Msa1170200:intron | 20.0% |
| !! | GGTTGTGTTATATTAATTAA+TGG | - | chr7_4:63351825-63351844 | Msa1170200:intron | 20.0% |
| !! | AAATATTATCGAAAAACACT+AGG | - | chr7_4:63352041-63352060 | Msa1170200:five_prime_UTR | 20.0% |
| ! | CGTAGAGAATAGAAAATAAA+AGG | + | chr7_4:63349523-63349542 | None:intergenic | 25.0% |
| ! | AAAAATTGGGGGAAAAATTA+GGG | + | chr7_4:63349557-63349576 | None:intergenic | 25.0% |
| ! | AAAAATCCGTTGAAAAATTG+GGG | + | chr7_4:63349569-63349588 | None:intergenic | 25.0% |
| ! | GAAAAATCCGTTGAAAAATT+GGG | + | chr7_4:63349570-63349589 | None:intergenic | 25.0% |
| ! | TGAAAAATCCGTTGAAAAAT+TGG | + | chr7_4:63349571-63349590 | None:intergenic | 25.0% |
| ! | CATCTATGGAATAGAAAAAT+TGG | + | chr7_4:63349602-63349621 | None:intergenic | 25.0% |
| ! | AGATGCAATGATGTAAAAAT+GGG | + | chr7_4:63349773-63349792 | None:intergenic | 25.0% |
| ! | TAGATGCAATGATGTAAAAA+TGG | + | chr7_4:63349774-63349793 | None:intergenic | 25.0% |
| !!! | ATCATAATTTTTTGTTGGTG+TGG | - | chr7_4:63349811-63349830 | Msa1170200:intron | 25.0% |
| !!! | TTTTTTTAGCTTTTATGGCT+TGG | - | chr7_4:63350090-63350109 | Msa1170200:CDS | 25.0% |
| ! | TAAATGATATCTGAAAGTAG+TGG | - | chr7_4:63350214-63350233 | Msa1170200:CDS | 25.0% |
| ! | AGTTTATCACATTACCATTA+AGG | + | chr7_4:63350244-63350263 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATATTGCTTC+TGG | - | chr7_4:63350571-63350590 | Msa1170200:intron | 25.0% |
| ! | AAATCAGAATGCAAATCAAA+TGG | + | chr7_4:63350736-63350755 | None:intergenic | 25.0% |
| ! | AAGAAAGAGCAAAAGTAAAA+AGG | - | chr7_4:63350939-63350958 | Msa1170200:intron | 25.0% |
| !!! | CAAATTTGATTTTATCAGAG+GGG | - | chr7_4:63351091-63351110 | Msa1170200:intron | 25.0% |
| ! | AAGATTTATCATTGACATTG+TGG | + | chr7_4:63351721-63351740 | None:intergenic | 25.0% |
| AAATATTAGGGTTTGCGATT+GGG | + | chr7_4:63349419-63349438 | None:intergenic | 30.0% | |
| GAAAAATTGGGGGAAAAATT+AGG | + | chr7_4:63349558-63349577 | None:intergenic | 30.0% | |
| !! | TTTTTCCCCCAATTTTTCAA+CGG | - | chr7_4:63349560-63349579 | Msa1170200:three_prime_UTR | 30.0% |
| AAAATCCGTTGAAAAATTGG+GGG | + | chr7_4:63349568-63349587 | None:intergenic | 30.0% | |
| ! | TTCTTTTCGCATTTTCTCAA+TGG | + | chr7_4:63349972-63349991 | None:intergenic | 30.0% |
| ATTTATAAGGCTAGTATGTG+TGG | - | chr7_4:63350135-63350154 | Msa1170200:CDS | 30.0% | |
| !! | ATTGCTTTAAGTTGTTTGAG+AGG | - | chr7_4:63350498-63350517 | Msa1170200:intron | 30.0% |
| TTGAAACTTAAGCTGTACAA+TGG | + | chr7_4:63350612-63350631 | None:intergenic | 30.0% | |
| CCAGATCATACTAATTGTAT+AGG | + | chr7_4:63350798-63350817 | None:intergenic | 30.0% | |
| CCTATACAATTAGTATGATC+TGG | - | chr7_4:63350795-63350814 | Msa1170200:intron | 30.0% | |
| AAGAGCAAAAGTAAAAAGGA+AGG | - | chr7_4:63350943-63350962 | Msa1170200:intron | 30.0% | |
| ! | AGTAAAAAGGAAGGTTCTTT+TGG | - | chr7_4:63350952-63350971 | Msa1170200:intron | 30.0% |
| !!! | GAAGGTTCTTTTGGAATTTA+GGG | - | chr7_4:63350961-63350980 | Msa1170200:intron | 30.0% |
| !!! | AAGGTTCTTTTGGAATTTAG+GGG | - | chr7_4:63350962-63350981 | Msa1170200:intron | 30.0% |
| AACAATTTCATTGACAAAGC+AGG | + | chr7_4:63351020-63351039 | None:intergenic | 30.0% | |
| TAATCAAGTATCTTCGATTG+AGG | + | chr7_4:63351201-63351220 | None:intergenic | 30.0% | |
| AATCGAAGATACTTGATTAC+AGG | - | chr7_4:63351202-63351221 | Msa1170200:intron | 30.0% | |
| ATCGAAGATACTTGATTACA+GGG | - | chr7_4:63351203-63351222 | Msa1170200:intron | 30.0% | |
| AATATCCATAGGGATCATAT+AGG | + | chr7_4:63351286-63351305 | None:intergenic | 30.0% | |
| ATATGACATAATTGTCCACA+AGG | + | chr7_4:63351404-63351423 | None:intergenic | 30.0% | |
| AGTCAGTTTACTGAAATTTC+AGG | - | chr7_4:63351448-63351467 | Msa1170200:CDS | 30.0% | |
| !! | CTGAAATTTCAGGTATCTTT+TGG | - | chr7_4:63351458-63351477 | Msa1170200:CDS | 30.0% |
| TCAAAATAGCAAAAGGAGAA+GGG | + | chr7_4:63351574-63351593 | None:intergenic | 30.0% | |
| AACTCAGTCAAAATAGCAAA+AGG | + | chr7_4:63351581-63351600 | None:intergenic | 30.0% | |
| ACAATGACTACTTATGAACT+TGG | + | chr7_4:63351757-63351776 | None:intergenic | 30.0% | |
| ! | AGTGAATGCATGCATAATTT+TGG | - | chr7_4:63351802-63351821 | Msa1170200:intron | 30.0% |
| ! | GTGAATGCATGCATAATTTT+GGG | - | chr7_4:63351803-63351822 | Msa1170200:intron | 30.0% |
| ! | TGAATGCATGCATAATTTTG+GGG | - | chr7_4:63351804-63351823 | Msa1170200:intron | 30.0% |
| AGGGAAAGAGTTATATAAAG+AGG | + | chr7_4:63351871-63351890 | None:intergenic | 30.0% | |
| TTATCGAAAAACACTAGGAT+TGG | - | chr7_4:63352046-63352065 | Msa1170200:five_prime_UTR | 30.0% | |
| AACAAGCAAGAACACTTCTA+GGG | - | chr7_4:63349384-63349403 | Msa1170200:three_prime_UTR | 35.0% | |
| GAAATATTAGGGTTTGCGAT+TGG | + | chr7_4:63349420-63349439 | None:intergenic | 35.0% | |
| GGGTAATTTCATATCAACCA+AGG | + | chr7_4:63349753-63349772 | None:intergenic | 35.0% | |
| GAAAATGCGAAAAGAAATCG+AGG | - | chr7_4:63349976-63349995 | Msa1170200:intron | 35.0% | |
| AAAAGAAATCGAGGCAAATC+AGG | - | chr7_4:63349985-63350004 | Msa1170200:intron | 35.0% | |
| GTTCAGAAATGTAAAACCCT+TGG | + | chr7_4:63350181-63350200 | None:intergenic | 35.0% | |
| !! | AAAGTAGTGGATTGCCTTAA+TGG | - | chr7_4:63350227-63350246 | Msa1170200:CDS | 35.0% |
| ATGCATAACCAGAAGCAATA+TGG | + | chr7_4:63350582-63350601 | None:intergenic | 35.0% | |
| CTTTAAATCTTCAGCGAAGT+AGG | + | chr7_4:63350700-63350719 | None:intergenic | 35.0% | |
| ! | TTCGCTGAAGATTTAAAGCA+AGG | - | chr7_4:63350702-63350721 | Msa1170200:intron | 35.0% |
| CATTACATGCTTCTTTAGAC+AGG | + | chr7_4:63350904-63350923 | None:intergenic | 35.0% | |
| !!! | GGAAGGTTCTTTTGGAATTT+AGG | - | chr7_4:63350960-63350979 | Msa1170200:intron | 35.0% |
| CATTGACAAAGCAGGAAAAA+GGG | + | chr7_4:63351012-63351031 | None:intergenic | 35.0% | |
| TCATTGACAAAGCAGGAAAA+AGG | + | chr7_4:63351013-63351032 | None:intergenic | 35.0% | |
| !!! | TTTTCAGGTTTAGGGACAAT+AGG | + | chr7_4:63351156-63351175 | None:intergenic | 35.0% |
| !! | TGGGTTGATCAATATCCATA+GGG | + | chr7_4:63351296-63351315 | None:intergenic | 35.0% |
| !! | ATGGGTTGATCAATATCCAT+AGG | + | chr7_4:63351297-63351316 | None:intergenic | 35.0% |
| GTAGGTTCATTTGGATCAAT+GGG | + | chr7_4:63351315-63351334 | None:intergenic | 35.0% | |
| TGTAGGTTCATTTGGATCAA+TGG | + | chr7_4:63351316-63351335 | None:intergenic | 35.0% | |
| ACACAGTATGTAGGTTCATT+TGG | + | chr7_4:63351324-63351343 | None:intergenic | 35.0% | |
| TGATGACAAACACAGTATGT+AGG | + | chr7_4:63351333-63351352 | None:intergenic | 35.0% | |
| TACATACTGTGTTTGTCATC+AGG | - | chr7_4:63351332-63351351 | Msa1170200:intron | 35.0% | |
| AAAATAGCAAAAGGAGAAGG+GGG | + | chr7_4:63351572-63351591 | None:intergenic | 35.0% | |
| CAAAATAGCAAAAGGAGAAG+GGG | + | chr7_4:63351573-63351592 | None:intergenic | 35.0% | |
| GTCAAAATAGCAAAAGGAGA+AGG | + | chr7_4:63351575-63351594 | None:intergenic | 35.0% | |
| ACTTATGAACTTGGTTCAAC+TGG | + | chr7_4:63351748-63351767 | None:intergenic | 35.0% | |
| TCTTGCTTGTTCAGATACGA+GGG | + | chr7_4:63349375-63349394 | None:intergenic | 40.0% | |
| TTCTTGCTTGTTCAGATACG+AGG | + | chr7_4:63349376-63349395 | None:intergenic | 40.0% | |
| GAACAAGCAAGAACACTTCT+AGG | - | chr7_4:63349383-63349402 | Msa1170200:three_prime_UTR | 40.0% | |
| AGTCTACGTCGATGACTATT+TGG | - | chr7_4:63349487-63349506 | Msa1170200:three_prime_UTR | 40.0% | |
| TGGGGGAAAAATTAGGGTTA+GGG | + | chr7_4:63349551-63349570 | None:intergenic | 40.0% | |
| TTGGGGGAAAAATTAGGGTT+AGG | + | chr7_4:63349552-63349571 | None:intergenic | 40.0% | |
| !! | ACAGCAGACAAAGTACTGTA+TGG | - | chr7_4:63349871-63349890 | Msa1170200:intron | 40.0% |
| !! | CAGCAGACAAAGTACTGTAT+GGG | - | chr7_4:63349872-63349891 | Msa1170200:intron | 40.0% |
| TGTATGGGATTCTCATCTCA+TGG | - | chr7_4:63349887-63349906 | Msa1170200:intron | 40.0% | |
| !! | TCATCTCATGGCTCTAAGAA+GGG | - | chr7_4:63349899-63349918 | Msa1170200:intron | 40.0% |
| !! | CTTTTATGGCTTGGACAAGA+GGG | - | chr7_4:63350099-63350118 | Msa1170200:CDS | 40.0% |
| ATGATTGCAGCTCCTATCTT+GGG | - | chr7_4:63350539-63350558 | Msa1170200:intron | 40.0% | |
| ATTCACATGACTCCCAAGAT+AGG | + | chr7_4:63350554-63350573 | None:intergenic | 40.0% | |
| AAGCAGGAAAAAGGGAATTC+CGG | + | chr7_4:63351004-63351023 | None:intergenic | 40.0% | |
| GGATCATATAGGCCTTCTTA+TGG | + | chr7_4:63351275-63351294 | None:intergenic | 40.0% | |
| ! | TACAGTTTCAAGTCTCCTTG+TGG | - | chr7_4:63351386-63351405 | Msa1170200:CDS | 40.0% |
| AAATAGCAAAAGGAGAAGGG+GGG | + | chr7_4:63351571-63351590 | None:intergenic | 40.0% | |
| TGGTTCCACTATTCATGTGT+TGG | - | chr7_4:63351637-63351656 | Msa1170200:intron | 40.0% | |
| TTAGGCCAACACATGAATAG+TGG | + | chr7_4:63351645-63351664 | None:intergenic | 40.0% | |
| TGAACCTTGTCTCTTGTGTT+AGG | + | chr7_4:63351663-63351682 | None:intergenic | 40.0% | |
| AACACAAGAGACAAGGTTCA+AGG | - | chr7_4:63351663-63351682 | Msa1170200:intron | 40.0% | |
| ACACAAGAGACAAGGTTCAA+GGG | - | chr7_4:63351664-63351683 | Msa1170200:intron | 40.0% | |
| GTGGTAGTAATCTGCAAGTT+GGG | + | chr7_4:63351702-63351721 | None:intergenic | 40.0% | |
| TGTGGTAGTAATCTGCAAGT+TGG | + | chr7_4:63351703-63351722 | None:intergenic | 40.0% | |
| TTGCTTGACTATTTGTGTGC+CGG | - | chr7_4:63351935-63351954 | Msa1170200:CDS | 40.0% | |
| GGATTTGAGTAGTATGCATG+AGG | - | chr7_4:63352080-63352099 | Msa1170200:five_prime_UTR | 40.0% | |
| AAAACGCTGTCGTATGAGCA+TGG | + | chr7_4:63349337-63349356 | None:intergenic | 45.0% | |
| AAAATGGCAATTGCACGCAC+TGG | - | chr7_4:63349464-63349483 | Msa1170200:three_prime_UTR | 45.0% | |
| TCGTTCATCGAGTTCACGAA+CGG | + | chr7_4:63349664-63349683 | None:intergenic | 45.0% | |
| ACAGTACTTTGTCTGCTGTC+TGG | + | chr7_4:63349870-63349889 | None:intergenic | 45.0% | |
| !! | CTCATCTCATGGCTCTAAGA+AGG | - | chr7_4:63349898-63349917 | Msa1170200:intron | 45.0% |
| TTTATGCACTGCCACTGAGA+AGG | - | chr7_4:63350021-63350040 | Msa1170200:intron | 45.0% | |
| !! | TGCCACTGAGAAGGTTTTGT+TGG | - | chr7_4:63350030-63350049 | Msa1170200:intron | 45.0% |
| TGCCAACAAAACCTTCTCAG+TGG | + | chr7_4:63350035-63350054 | None:intergenic | 45.0% | |
| !! | GCTTTTATGGCTTGGACAAG+AGG | - | chr7_4:63350098-63350117 | Msa1170200:CDS | 45.0% |
| ! | TGTGGATTACTGCTGCAACA+AGG | - | chr7_4:63350153-63350172 | Msa1170200:CDS | 45.0% |
| ! | GTGGATTACTGCTGCAACAA+GGG | - | chr7_4:63350154-63350173 | Msa1170200:CDS | 45.0% |
| TGGATTACTGCTGCAACAAG+GGG | - | chr7_4:63350155-63350174 | Msa1170200:CDS | 45.0% | |
| GAGCTGCAATCATCTAGTCA+AGG | + | chr7_4:63350532-63350551 | None:intergenic | 45.0% | |
| GATGATTGCAGCTCCTATCT+TGG | - | chr7_4:63350538-63350557 | Msa1170200:intron | 45.0% | |
| !! | CCTCATCGAGTCGTTTTACA+TGG | + | chr7_4:63350671-63350690 | None:intergenic | 45.0% |
| CCATGTAAAACGACTCGATG+AGG | - | chr7_4:63350668-63350687 | Msa1170200:intron | 45.0% | |
| !!! | GGGTATGTTTTTTCGTACCC+CGG | - | chr7_4:63350982-63351001 | Msa1170200:intron | 45.0% |
| AGCAGGAAAAAGGGAATTCC+GGG | + | chr7_4:63351003-63351022 | None:intergenic | 45.0% | |
| TTTAGGGACAATAGGCAGTG+GGG | + | chr7_4:63351148-63351167 | None:intergenic | 45.0% | |
| GTTTAGGGACAATAGGCAGT+GGG | + | chr7_4:63351149-63351168 | None:intergenic | 45.0% | |
| TTGATTACAGGGAGAGAGAC+TGG | - | chr7_4:63351214-63351233 | Msa1170200:intron | 45.0% | |
| TGATTACAGGGAGAGAGACT+GGG | - | chr7_4:63351215-63351234 | Msa1170200:intron | 45.0% | |
| GAAGGCCTATATGATCCCTA+TGG | - | chr7_4:63351278-63351297 | Msa1170200:intron | 45.0% | |
| TGTTATTCTTGACAGTGCCG+AGG | - | chr7_4:63351607-63351626 | Msa1170200:intron | 45.0% | |
| TTGGCCTAACACAAGAGACA+AGG | - | chr7_4:63351656-63351675 | Msa1170200:intron | 45.0% | |
| AGACAAGGTTCAAGGGAAAG+TGG | - | chr7_4:63351671-63351690 | Msa1170200:intron | 45.0% | |
| !! | CGTGTGCATTTTCTGGTCAA+GGG | + | chr7_4:63351890-63351909 | None:intergenic | 45.0% |
| CCTTGACCAGAAAATGCACA+CGG | - | chr7_4:63351888-63351907 | Msa1170200:intron | 45.0% | |
| CTTGACCAGAAAATGCACAC+GGG | - | chr7_4:63351889-63351908 | Msa1170200:intron | 45.0% | |
| ! | CAAATCCCGTGTGCATTTTC+TGG | + | chr7_4:63351897-63351916 | None:intergenic | 45.0% |
| !! | ACTAGGATTGGTCTGATGTG+AGG | - | chr7_4:63352058-63352077 | Msa1170200:five_prime_UTR | 45.0% |
| !! | CTAGGATTGGTCTGATGTGA+GGG | - | chr7_4:63352059-63352078 | Msa1170200:five_prime_UTR | 45.0% |
| !!! | AAAAAAAAGTAATAATTTTA+GGG | + | chr7_4:63349727-63349746 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAGTAATAATTTT+AGG | + | chr7_4:63349728-63349747 | None:intergenic | 5.0% |
| TTCAGATACGAGGGAAGCGA+AGG | + | chr7_4:63349366-63349385 | None:intergenic | 50.0% | |
| !! | AGAAGTCTCTGAAGCTCAGC+GGG | + | chr7_4:63349636-63349655 | None:intergenic | 50.0% |
| !! | GAGAAGTCTCTGAAGCTCAG+CGG | + | chr7_4:63349637-63349656 | None:intergenic | 50.0% |
| ACTTTGTCTGCTGTCTGGTC+TGG | + | chr7_4:63349865-63349884 | None:intergenic | 50.0% | |
| GGCACGACAAGCATATGAAC+TGG | - | chr7_4:63350051-63350070 | Msa1170200:intron | 50.0% | |
| GCAGGAAAAAGGGAATTCCG+GGG | + | chr7_4:63351002-63351021 | None:intergenic | 50.0% | |
| TTAGGGACAATAGGCAGTGG+GGG | + | chr7_4:63351147-63351166 | None:intergenic | 50.0% | |
| GGTTTAGGGACAATAGGCAG+TGG | + | chr7_4:63351150-63351169 | None:intergenic | 50.0% | |
| ! | TCCCTAAACCTGAAAAGCGC+AGG | - | chr7_4:63351160-63351179 | Msa1170200:intron | 50.0% |
| !!! | GCCTGCGCTTTTCAGGTTTA+GGG | + | chr7_4:63351164-63351183 | None:intergenic | 50.0% |
| !!! | TGCCTGCGCTTTTCAGGTTT+AGG | + | chr7_4:63351165-63351184 | None:intergenic | 50.0% |
| ! | TATGTGTGCCTGCGCTTTTC+AGG | + | chr7_4:63351171-63351190 | None:intergenic | 50.0% |
| ! | GAAAAGCGCAGGCACACATA+CGG | - | chr7_4:63351171-63351190 | Msa1170200:intron | 50.0% |
| TTTGAGCTAATGCCTCCACC+AGG | - | chr7_4:63351246-63351265 | Msa1170200:intron | 50.0% | |
| TTCTTATGGCTTCCTGGTGG+AGG | + | chr7_4:63351261-63351280 | None:intergenic | 50.0% | |
| TCCACCAGGAAGCCATAAGA+AGG | - | chr7_4:63351260-63351279 | Msa1170200:intron | 50.0% | |
| TAGGCCTTCTTATGGCTTCC+TGG | + | chr7_4:63351267-63351286 | None:intergenic | 50.0% | |
| CAAAAGGAGAAGGGGGGAAA+AGG | + | chr7_4:63351565-63351584 | None:intergenic | 50.0% | |
| ! | TATTCTTGACAGTGCCGAGG+AGG | - | chr7_4:63351610-63351629 | Msa1170200:intron | 50.0% |
| AGTGGAACCATTCACCTCCT+CGG | + | chr7_4:63351627-63351646 | None:intergenic | 50.0% | |
| !! | CCGTGTGCATTTTCTGGTCA+AGG | + | chr7_4:63351891-63351910 | None:intergenic | 50.0% |
| AGATACGAGGGAAGCGAAGG+TGG | + | chr7_4:63349363-63349382 | None:intergenic | 55.0% | |
| ! | GGGCAACGTGTTGGCATCTA+TGG | + | chr7_4:63349616-63349635 | None:intergenic | 55.0% |
| GCCTTCTTATGGCTTCCTGG+TGG | + | chr7_4:63351264-63351283 | None:intergenic | 55.0% | |
| ATGTCATCACTGTCGCCGCA+CGG | + | chr7_4:63351967-63351986 | None:intergenic | 55.0% | |
| AAGCTCAGCGGGCAACGTGT+TGG | + | chr7_4:63349625-63349644 | None:intergenic | 60.0% | |
| ACTGCTGCAACAAGGGGCCA+AGG | - | chr7_4:63350161-63350180 | Msa1170200:CDS | 60.0% | |
| CTGCTGCAACAAGGGGCCAA+GGG | - | chr7_4:63350162-63350181 | Msa1170200:CDS | 60.0% | |
| GGCAGTGGGGGAAGAATTGC+TGG | + | chr7_4:63351135-63351154 | None:intergenic | 60.0% | |
| ! | GACAGTGCCGAGGAGGTGAA+TGG | - | chr7_4:63351617-63351636 | Msa1170200:intron | 60.0% |
| !! | GTGTGCCGGTTCACACCGTG+CGG | - | chr7_4:63351949-63351968 | Msa1170200:exon | 65.0% |
| TGTCGCCGCACGGTGTGAAC+CGG | + | chr7_4:63351957-63351976 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 63349318 | 63352113 | 63349318 | ID=Msa1170200;Name=Msa1170200 |
| chr7_4 | mRNA | 63349318 | 63352113 | 63349318 | ID=Msa1170200-mRNA-1;Parent=Msa1170200;Name=Msa1170200-mRNA-1;_AED=0.22;_eAED=0.22;_QI=149|0.83|0.85|1|0.83|0.71|7|381|286 |
| chr7_4 | exon | 63349318 | 63349809 | 63349318 | ID=Msa1170200-mRNA-1:exon:20257;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63349923 | 63349961 | 63349923 | ID=Msa1170200-mRNA-1:exon:20256;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63350078 | 63350322 | 63350078 | ID=Msa1170200-mRNA-1:exon:20255;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63350708 | 63350771 | 63350708 | ID=Msa1170200-mRNA-1:exon:20254;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63351359 | 63351578 | 63351359 | ID=Msa1170200-mRNA-1:exon:20253;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63351677 | 63351812 | 63351677 | ID=Msa1170200-mRNA-1:exon:20252;Parent=Msa1170200-mRNA-1 |
| chr7_4 | exon | 63351919 | 63352113 | 63351919 | ID=Msa1170200-mRNA-1:exon:20251;Parent=Msa1170200-mRNA-1 |
| chr7_4 | five_prime_UTR | 63351965 | 63352113 | 63351965 | ID=Msa1170200-mRNA-1:five_prime_utr;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63351919 | 63351964 | 63351919 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63351677 | 63351812 | 63351677 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63351359 | 63351578 | 63351359 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63350708 | 63350771 | 63350708 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63350078 | 63350322 | 63350078 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63349923 | 63349961 | 63349923 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | CDS | 63349699 | 63349809 | 63349699 | ID=Msa1170200-mRNA-1:cds;Parent=Msa1170200-mRNA-1 |
| chr7_4 | three_prime_UTR | 63349318 | 63349698 | 63349318 | ID=Msa1170200-mRNA-1:three_prime_utr;Parent=Msa1170200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
