Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159630 | XP_003625123.1 | 100.000 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159630 | sp|Q9SS44|TF2B2_ARATH | 92.652 | 313 | 22 | 1 | 1 | 313 | 1 | 312 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159630 | G7KSP1 | 100.000 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1074110 | Msa1159630 | 0.905400 | 4.469833e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159630 | MtrunA17_Chr7g0257271 | 100.000 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 0.0 | 649 |
| Msa1159630 | MtrunA17_Chr3g0091551 | 92.652 | 313 | 23 | 0 | 1 | 313 | 1 | 313 | 0.0 | 608 |
| Msa1159630 | MtrunA17_Chr3g0092431 | 81.935 | 310 | 51 | 1 | 1 | 310 | 1 | 305 | 0.0 | 528 |
| Msa1159630 | MtrunA17_Chr3g0092491 | 74.760 | 313 | 36 | 1 | 1 | 313 | 1 | 270 | 2.82e-164 | 457 |
| Msa1159630 | MtrunA17_Chr1g0173141 | 81.865 | 193 | 34 | 1 | 121 | 313 | 4 | 195 | 5.61e-115 | 330 |
| Msa1159630 | MtrunA17_Chr1g0173151 | 79.661 | 118 | 24 | 0 | 1 | 118 | 1 | 118 | 8.19e-64 | 197 |
| Msa1159630 | MtrunA17_Chr1g0156011 | 67.416 | 89 | 22 | 2 | 210 | 291 | 28 | 116 | 1.36e-29 | 109 |
| Msa1159630 | MtrunA17_Chr5g0403861 | 34.184 | 196 | 121 | 4 | 108 | 301 | 134 | 323 | 1.55e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159630 | AT3G10330.1 | 92.652 | 313 | 22 | 1 | 1 | 313 | 1 | 312 | 0.0 | 603 |
| Msa1159630 | AT2G41630.1 | 84.984 | 313 | 46 | 1 | 1 | 313 | 1 | 312 | 0.0 | 558 |
| Msa1159630 | AT3G29380.1 | 42.767 | 318 | 171 | 5 | 1 | 307 | 1 | 318 | 1.72e-83 | 255 |
| Msa1159630 | AT3G57370.1 | 33.333 | 369 | 170 | 10 | 6 | 313 | 9 | 362 | 2.97e-47 | 162 |
| Msa1159630 | AT4G10680.1 | 34.694 | 196 | 102 | 5 | 3 | 195 | 4 | 176 | 2.16e-23 | 95.1 |
| Msa1159630 | AT4G36650.1 | 34.694 | 196 | 120 | 4 | 108 | 301 | 133 | 322 | 8.35e-22 | 95.9 |
| Msa1159630 | AT4G36650.2 | 35.057 | 174 | 105 | 4 | 108 | 279 | 133 | 300 | 6.90e-18 | 83.6 |
Find 120 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCACGGCCAATTTCCTTCT+TGG | 0.087015 | 7_4:-49279444 | None:intergenic |
| AATGATTTCATCACCTTTAT+AGG | 0.100575 | 7_4:-49281664 | None:intergenic |
| AGCCTCCTCATTCAAGTATT+TGG | 0.120046 | 7_4:+49281563 | Msa1159630:three_prime_UTR |
| AATTCATGCTGGGGACTTTA+TGG | 0.146027 | 7_4:+49279529 | Msa1159630:CDS |
| GCCTCCTCATTCAAGTATTT+GGG | 0.259545 | 7_4:+49281564 | Msa1159630:three_prime_UTR |
| AACTGCTGCAGCAATTGATA+TGG | 0.274816 | 7_4:-49280559 | None:intergenic |
| ACGAAATACACATACCTTAA+TGG | 0.290265 | 7_4:-49277958 | None:intergenic |
| ATCATAGGATGTACCCTTTA+CGG | 0.305878 | 7_4:-49279315 | None:intergenic |
| ATCCTTGCGTTCAAAACTAT+TGG | 0.312072 | 7_4:+49277708 | Msa1159630:CDS |
| ATCGGTAAGGAGAGGGTTAC+TGG | 0.314300 | 7_4:-49277577 | None:intergenic |
| AAGAAATCAGGACGCATTAT+TGG | 0.327460 | 7_4:+49279247 | Msa1159630:CDS |
| GGGACTGGTTCCGACCATTA+AGG | 0.332605 | 7_4:+49277944 | Msa1159630:CDS |
| GTTCAAAACTATTGGTACTA+TGG | 0.338830 | 7_4:+49277716 | Msa1159630:CDS |
| GGTGATTATATCTATGAATA+TGG | 0.342187 | 7_4:-49281610 | None:intergenic |
| TTCCTTCTTGGTGGCTCCAT+TGG | 0.342202 | 7_4:-49279432 | None:intergenic |
| TGAAACGGAGGATAAATTAA+TGG | 0.342541 | 7_4:-49277210 | None:intergenic |
| TGGCGGTCAATCTGTTGAAA+TGG | 0.354243 | 7_4:+49279502 | Msa1159630:CDS |
| AATCAGAAGAATTTGATATA+AGG | 0.356784 | 7_4:+49279751 | Msa1159630:CDS |
| GGAGCCACCAAGAAGGAAAT+TGG | 0.363081 | 7_4:+49279437 | Msa1159630:CDS |
| ATTGGGGCACCTTTGTTGTC+TGG | 0.381254 | 7_4:+49281684 | Msa1159630:three_prime_UTR |
| GCTAAGCCTAACGGTGCTTC+CGG | 0.382114 | 7_4:+49277621 | Msa1159630:CDS |
| AAGATAATATTATCCTATAA+AGG | 0.383319 | 7_4:+49281651 | Msa1159630:three_prime_UTR |
| GTCTAGCAGGGGAAGAAATC+AGG | 0.396384 | 7_4:+49279235 | Msa1159630:CDS |
| CATAGTGAAACAACTGGGTT+TGG | 0.405085 | 7_4:+49279475 | Msa1159630:CDS |
| ATAAAGGTGATGAAATCATT+GGG | 0.417976 | 7_4:+49281667 | Msa1159630:three_prime_UTR |
| TATAAAGGTGATGAAATCAT+TGG | 0.419152 | 7_4:+49281666 | Msa1159630:three_prime_UTR |
| TCTTCCTTCGCATACCAGTT+TGG | 0.420592 | 7_4:-49281372 | None:intergenic |
| AGAATACATAGTGAAACAAC+TGG | 0.423190 | 7_4:+49279469 | Msa1159630:CDS |
| TTCAACTTTCAATGACATCT+AGG | 0.423539 | 7_4:-49281452 | None:intergenic |
| GACAAGCCACGAACCGTAAA+GGG | 0.425450 | 7_4:+49279302 | Msa1159630:CDS |
| GTTTCCGAGTTTCTCTCTCT+AGG | 0.426134 | 7_4:-49277369 | None:intergenic |
| CTGGGACCACCGACACGAAC+GGG | 0.431529 | 7_4:-49277558 | None:intergenic |
| TTCGGAGTGTGGTCTCGTCT+TGG | 0.434035 | 7_4:+49277470 | Msa1159630:CDS |
| TTTCAAAGATAATACCAAAC+TGG | 0.453182 | 7_4:+49281358 | Msa1159630:CDS |
| CGAACCTTCGCTAACGAATC+CGG | 0.453434 | 7_4:+49277525 | Msa1159630:CDS |
| TTGATTGAAGATGTGCTTGA+TGG | 0.457167 | 7_4:-49277182 | None:intergenic |
| CGCCGGCGATGCAGTCTGTT+CGG | 0.458749 | 7_4:+49277452 | Msa1159630:CDS |
| ATCCTTGTATGAGTTCCTAA+TGG | 0.459175 | 7_4:-49281322 | None:intergenic |
| GATGTACCCTTTACGGTTCG+TGG | 0.464597 | 7_4:-49279308 | None:intergenic |
| GGCGGTCAATCTGTTGAAAT+GGG | 0.469059 | 7_4:+49279503 | Msa1159630:CDS |
| AAACAACTGGGTTTGGAGAA+TGG | 0.469627 | 7_4:+49279482 | Msa1159630:CDS |
| TCAAGCTGTTAAAGCTGCTC+AGG | 0.470264 | 7_4:+49279716 | Msa1159630:CDS |
| TCTCGTCTTCTCTCGGTCGT+TGG | 0.473284 | 7_4:+49277652 | Msa1159630:CDS |
| ACGGCCAATTTCCTTCTTGG+TGG | 0.479855 | 7_4:-49279441 | None:intergenic |
| AAACACAATTAACACATCAA+TGG | 0.482079 | 7_4:+49277265 | Msa1159630:five_prime_UTR |
| CTCCGAACAGACTGCATCGC+CGG | 0.488164 | 7_4:-49277454 | None:intergenic |
| TGAGAGCGTTTGAAATGAAA+CGG | 0.497457 | 7_4:-49277225 | None:intergenic |
| ACTGCTGCAGCAATTGATAT+GGG | 0.502657 | 7_4:-49280558 | None:intergenic |
| TTTCCGAGTTTCTCTCTCTA+GGG | 0.508097 | 7_4:-49277368 | None:intergenic |
| TTGAAGATCAGAAGTCTAGC+AGG | 0.514009 | 7_4:+49279222 | Msa1159630:CDS |
| AACGATCCCGTTCGTGTCGG+TGG | 0.516852 | 7_4:+49277552 | Msa1159630:CDS |
| TGGTATTATCTTTGAAACAT+GGG | 0.517194 | 7_4:-49281352 | None:intergenic |
| CGACTGCAAGCGAGCGACGG+AGG | 0.519185 | 7_4:+49277413 | Msa1159630:CDS |
| AGACAAGCCACGAACCGTAA+AGG | 0.530566 | 7_4:+49279301 | Msa1159630:CDS |
| CTCGGTCGTTGGCAGAATCG+TGG | 0.531216 | 7_4:+49277663 | Msa1159630:CDS |
| GCAGATATATCAGTTGCTAC+AGG | 0.531635 | 7_4:+49281285 | Msa1159630:intron |
| CAGCGACTGCAAGCGAGCGA+CGG | 0.532018 | 7_4:+49277410 | Msa1159630:CDS |
| GAAATGGGAACAATTCATGC+TGG | 0.537995 | 7_4:+49279518 | Msa1159630:CDS |
| CGCAAGGATCAATCCACGAT+CGG | 0.538169 | 7_4:-49277694 | None:intergenic |
| CTGCAAGCGAGCGACGGAGG+TGG | 0.539765 | 7_4:+49277416 | Msa1159630:CDS |
| GCAAGGATCAATCCACGATC+GGG | 0.539890 | 7_4:-49277693 | None:intergenic |
| GAAATTTGCTCGATTGCCAA+TGG | 0.542448 | 7_4:+49279416 | Msa1159630:intron |
| AAATGGGAACAATTCATGCT+GGG | 0.542849 | 7_4:+49279519 | Msa1159630:CDS |
| CCACTCGGAGGTTTCATCGA+TGG | 0.547579 | 7_4:-49277502 | None:intergenic |
| GTTAGCGAAGGTTCGCCACT+CGG | 0.548954 | 7_4:-49277517 | None:intergenic |
| TTGGTATTATCTTTGAAACA+TGG | 0.552826 | 7_4:-49281353 | None:intergenic |
| AGCTAATGAGATATATAAGC+GGG | 0.555073 | 7_4:+49279199 | Msa1159630:CDS |
| ACCGTTAGGCTTAGCAATGA+CGG | 0.566962 | 7_4:-49277613 | None:intergenic |
| ACTGGGACCACCGACACGAA+CGG | 0.567033 | 7_4:-49277559 | None:intergenic |
| AACCATTAGGAACTCATACA+AGG | 0.569754 | 7_4:+49281320 | Msa1159630:CDS |
| TGGAGAGACCACCATCGGTA+AGG | 0.571293 | 7_4:-49277590 | None:intergenic |
| GCTGCAAAACGCATCGGACA+TGG | 0.572012 | 7_4:-49277391 | None:intergenic |
| GGTATTATCTTTGAAACATG+GGG | 0.573323 | 7_4:-49281351 | None:intergenic |
| AACCCTCTCCTTACCGATGG+TGG | 0.575511 | 7_4:+49277582 | Msa1159630:CDS |
| GAGTTGCAGAAGGAACCATT+AGG | 0.581627 | 7_4:+49281307 | Msa1159630:CDS |
| ACCGTCATTGCTAAGCCTAA+CGG | 0.585900 | 7_4:+49277612 | Msa1159630:CDS |
| CCTCCTCATTCAAGTATTTG+GGG | 0.587551 | 7_4:+49281565 | Msa1159630:three_prime_UTR |
| TGCCAATGGAGCCACCAAGA+AGG | 0.588006 | 7_4:+49279430 | Msa1159630:CDS |
| TCACTATGTATTCTTTCGCA+CGG | 0.590768 | 7_4:-49279460 | None:intergenic |
| AGAAGACGAGAGAAAATCAC+CGG | 0.590877 | 7_4:-49277640 | None:intergenic |
| TAATTATAGTTATTACGAGA+CGG | 0.591027 | 7_4:-49281528 | None:intergenic |
| AATACACATACCTTAATGGT+CGG | 0.591568 | 7_4:-49277954 | None:intergenic |
| TCGGTAAGGAGAGGGTTACT+GGG | 0.602364 | 7_4:-49277576 | None:intergenic |
| GACCACCATCGGTAAGGAGA+GGG | 0.603996 | 7_4:-49277584 | None:intergenic |
| GATGCAGTCTGTTCGGAGTG+TGG | 0.606400 | 7_4:+49277459 | Msa1159630:CDS |
| GCAGTCGCTGCAAAACGCAT+CGG | 0.606677 | 7_4:-49277397 | None:intergenic |
| GCTTATATATCTCATTAGCT+CGG | 0.615889 | 7_4:-49279196 | None:intergenic |
| AGTAACCCTCTCCTTACCGA+TGG | 0.620939 | 7_4:+49277579 | Msa1159630:CDS |
| AATACCAAACTGGTATGCGA+AGG | 0.621663 | 7_4:+49281368 | Msa1159630:CDS |
| ATCACCGGATTCGTTAGCGA+AGG | 0.621681 | 7_4:-49277529 | None:intergenic |
| TGAAGATCAGAAGTCTAGCA+GGG | 0.622654 | 7_4:+49279223 | Msa1159630:CDS |
| GTGGTGTTCGACCACTCCGC+CGG | 0.623423 | 7_4:+49277435 | Msa1159630:CDS |
| AGCGAAGGTTCGCCACTCGG+AGG | 0.626549 | 7_4:-49277514 | None:intergenic |
| AGACTGCATCGCCGGCGGAG+TGG | 0.627397 | 7_4:-49277446 | None:intergenic |
| AACTGTCACAGACCTTTGAG+AGG | 0.627588 | 7_4:-49280618 | None:intergenic |
| AAATCACCGGAAGCACCGTT+AGG | 0.631103 | 7_4:-49277627 | None:intergenic |
| CCCCAAATACTTGAATGAGG+AGG | 0.632132 | 7_4:-49281565 | None:intergenic |
| AAACCCTAGAGAGAGAAACT+CGG | 0.633229 | 7_4:+49277365 | Msa1159630:five_prime_UTR |
| CTCCTCATTCAAGTATTTGG+GGG | 0.635364 | 7_4:+49281566 | Msa1159630:three_prime_UTR |
| AAACTGGTATGCGAAGGAAG+AGG | 0.641876 | 7_4:+49281374 | Msa1159630:CDS |
| GGGGAGACTGGAGAGTGGAG+AGG | 0.642780 | 7_4:+49281585 | Msa1159630:three_prime_UTR |
| CTTGTCGACAAGCAATGTAG+AGG | 0.643119 | 7_4:-49279277 | None:intergenic |
| GTTGCTACAGGAGTTGCAGA+AGG | 0.648786 | 7_4:+49281297 | Msa1159630:CDS |
| ATGAAATGGCCAGACAACAA+AGG | 0.650602 | 7_4:-49281693 | None:intergenic |
| GACGGTGGAGAGACCACCAT+CGG | 0.651740 | 7_4:-49277595 | None:intergenic |
| GATAACGATCCCGTTCGTGT+CGG | 0.652271 | 7_4:+49277549 | Msa1159630:CDS |
| CGTGGTTCTAATCCCGATCG+TGG | 0.653015 | 7_4:+49277681 | Msa1159630:CDS |
| CGAACAGACTGCATCGCCGG+CGG | 0.655902 | 7_4:-49277451 | None:intergenic |
| CTATTGGTACTATGGCTGAG+AGG | 0.657231 | 7_4:+49277724 | Msa1159630:CDS |
| AGACCACCATCGGTAAGGAG+AGG | 0.659672 | 7_4:-49277585 | None:intergenic |
| ACGAACGGGATCGTTATCAC+CGG | 0.663003 | 7_4:-49277544 | None:intergenic |
| GAAGATCAGAAGTCTAGCAG+GGG | 0.664166 | 7_4:+49279224 | Msa1159630:CDS |
| AATGGGAACAATTCATGCTG+GGG | 0.664649 | 7_4:+49279520 | Msa1159630:CDS |
| TAAAGGTGATGAAATCATTG+GGG | 0.684396 | 7_4:+49281668 | Msa1159630:three_prime_UTR |
| GAGCTAATGAGATATATAAG+CGG | 0.694381 | 7_4:+49279198 | Msa1159630:CDS |
| GAATACATAGTGAAACAACT+GGG | 0.707930 | 7_4:+49279470 | Msa1159630:CDS |
| GTTAGGCTTAGCAATGACGG+TGG | 0.724217 | 7_4:-49277610 | None:intergenic |
| GAGCGTTTGAAATGAAACGG+AGG | 0.735680 | 7_4:-49277222 | None:intergenic |
| CCATCGATGAAACCTCCGAG+TGG | 0.757869 | 7_4:+49277502 | Msa1159630:CDS |
| CAACTGGGTTTGGAGAATGG+CGG | 0.759270 | 7_4:+49279485 | Msa1159630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTTTTTTTTTTTTTG+AGG | + | chr7_4:49280640-49280659 | Msa1159630:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTGA+GGG | + | chr7_4:49280641-49280660 | Msa1159630:intron | 10.0% |
| !!! | TGTTAATTGTGTTTTTTTTT+CGG | - | chr7_4:49277259-49277278 | None:intergenic | 15.0% |
| !!! | CGTAAATTTTTGAATTATTA+TGG | + | chr7_4:49277786-49277805 | Msa1159630:intron | 15.0% |
| !!! | CATTAGTTTAATCAATATAA+TGG | + | chr7_4:49278016-49278035 | Msa1159630:intron | 15.0% |
| !! | TATAATTAGTTAATTACCAA+AGG | + | chr7_4:49278348-49278367 | Msa1159630:intron | 15.0% |
| !!! | CAAGATTGTTTTTTATTTTT+TGG | + | chr7_4:49280034-49280053 | Msa1159630:intron | 15.0% |
| !! | ATAAATAATTGAACCTAAAT+AGG | - | chr7_4:49280414-49280433 | None:intergenic | 15.0% |
| !! | TAAAGAATCCATAAAAATTA+AGG | - | chr7_4:49280464-49280483 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTAGATGTACAA+AGG | + | chr7_4:49280938-49280957 | Msa1159630:intron | 15.0% |
| !! | TAACTTAAATATACATATAG+AGG | - | chr7_4:49281192-49281211 | None:intergenic | 15.0% |
| !!! | ATAATATTATCTTTTCATCA+AGG | - | chr7_4:49281644-49281663 | None:intergenic | 15.0% |
| !! | AAGATAATATTATCCTATAA+AGG | + | chr7_4:49281651-49281670 | Msa1159630:three_prime_UTR | 15.0% |
| !!! | GTTATGTTTTTTTGATGAAA+AGG | + | chr7_4:49278456-49278475 | Msa1159630:intron | 20.0% |
| !!! | TTGTTTTGAAAATTTATGAG+CGG | + | chr7_4:49278880-49278899 | Msa1159630:intron | 20.0% |
| !!! | TAAAAAACTACACTTTTTCA+AGG | - | chr7_4:49279101-49279120 | None:intergenic | 20.0% |
| !! | TAAAAAACACTAACTTTACA+TGG | - | chr7_4:49279141-49279160 | None:intergenic | 20.0% |
| !! | CTATATGTTAAAAGAATCAT+AGG | - | chr7_4:49279333-49279352 | None:intergenic | 20.0% |
| !! | AATCAGAAGAATTTGATATA+AGG | + | chr7_4:49279751-49279770 | Msa1159630:CDS | 20.0% |
| !!! | TGCAGTATAATTTTTCATTT+TGG | - | chr7_4:49280101-49280120 | None:intergenic | 20.0% |
| !! | ATTATGTCTACTGTTAAATT+TGG | + | chr7_4:49280351-49280370 | Msa1159630:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTTGAGGG+AGG | + | chr7_4:49280644-49280663 | Msa1159630:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTGAGGGA+GGG | + | chr7_4:49280645-49280664 | Msa1159630:intron | 20.0% |
| !!! | TTCAAATAAGTTTCTAAAAG+TGG | + | chr7_4:49280790-49280809 | Msa1159630:intron | 20.0% |
| !! | TAATTATAGTTATTACGAGA+CGG | - | chr7_4:49281531-49281550 | None:intergenic | 20.0% |
| ! | AAACACAATTAACACATCAA+TGG | + | chr7_4:49277265-49277284 | Msa1159630:five_prime_UTR | 25.0% |
| !!! | TGATGAAATTTTTTCAGGTT+GGG | + | chr7_4:49277924-49277943 | Msa1159630:intron | 25.0% |
| ! | TTCTCAAATTGTTATCATTG+TGG | - | chr7_4:49278094-49278113 | None:intergenic | 25.0% |
| ! | TGTTAAGTTATATACTCTCT+TGG | + | chr7_4:49278217-49278236 | Msa1159630:intron | 25.0% |
| ! | CAACTACTTATCTTAATAAG+TGG | - | chr7_4:49278277-49278296 | None:intergenic | 25.0% |
| !!! | AATCCTAGCTTTTAAACAAA+AGG | + | chr7_4:49278430-49278449 | Msa1159630:intron | 25.0% |
| ! | TCAAACTACAAACATTATCT+AGG | - | chr7_4:49278697-49278716 | None:intergenic | 25.0% |
| !! | GCTCATAAATTTTCAAAACA+AGG | - | chr7_4:49278881-49278900 | None:intergenic | 25.0% |
| !! | AAGTTCACTTTGTTATAAGT+TGG | + | chr7_4:49278920-49278939 | Msa1159630:intron | 25.0% |
| ! | TATACAGGGAAAAATGTATA+GGG | - | chr7_4:49279362-49279381 | None:intergenic | 25.0% |
| !! | ATTTCTATTTGAAATTCACC+AGG | - | chr7_4:49279401-49279420 | None:intergenic | 25.0% |
| ! | AAAGTCTAAAGAAAAAAGTC+AGG | - | chr7_4:49279786-49279805 | None:intergenic | 25.0% |
| ! | TAAACTAAAGCAAATACTGT+TGG | - | chr7_4:49279929-49279948 | None:intergenic | 25.0% |
| !! | AACAGTATTTGCTTTAGTTT+AGG | + | chr7_4:49279928-49279947 | Msa1159630:intron | 25.0% |
| !! | ACAGTATTTGCTTTAGTTTA+GGG | + | chr7_4:49279929-49279948 | Msa1159630:intron | 25.0% |
| ! | TAGTTTAGTCATTAATCAGA+TGG | + | chr7_4:49280178-49280197 | Msa1159630:intron | 25.0% |
| ! | AATAAGTTGTTCAAACTCAT+AGG | - | chr7_4:49280323-49280342 | None:intergenic | 25.0% |
| ! | AGGTGAACTATCATTATATA+TGG | - | chr7_4:49280394-49280413 | None:intergenic | 25.0% |
| ! | TAATGATAGTTCACCTATTT+AGG | + | chr7_4:49280398-49280417 | Msa1159630:intron | 25.0% |
| !!! | TTTTTTATCATCTGAAAGCT+GGG | - | chr7_4:49280598-49280617 | None:intergenic | 25.0% |
| ! | TGGAAAACATGAAATACAAA+CGG | + | chr7_4:49280682-49280701 | Msa1159630:intron | 25.0% |
| !!! | TTGATGACGTGAATTTTATT+TGG | + | chr7_4:49280754-49280773 | Msa1159630:intron | 25.0% |
| !! | AAATAAGTTTCTAAAAGTGG+TGG | + | chr7_4:49280793-49280812 | Msa1159630:intron | 25.0% |
| !! | AATAAGTTTCTAAAAGTGGT+GGG | + | chr7_4:49280794-49280813 | Msa1159630:intron | 25.0% |
| !!! | AGTGTGGATGAATTTTTTAT+TGG | + | chr7_4:49280817-49280836 | Msa1159630:intron | 25.0% |
| !!! | CGATAATTGTTTTGAAAACA+AGG | + | chr7_4:49280872-49280891 | Msa1159630:intron | 25.0% |
| ! | AATGTAAAAATCACTTCAAC+AGG | + | chr7_4:49280961-49280980 | Msa1159630:intron | 25.0% |
| ! | CAATTAATCACATAATTCAG+TGG | - | chr7_4:49281035-49281054 | None:intergenic | 25.0% |
| !!! | TGTATTTAGAGAAGTTTTGT+GGG | + | chr7_4:49281141-49281160 | Msa1159630:intron | 25.0% |
| !!! | ATTTGTTTTTCAATCACATG+TGG | - | chr7_4:49281169-49281188 | None:intergenic | 25.0% |
| ! | ATATATCTGCAACAAAGAAA+TGG | - | chr7_4:49281275-49281294 | None:intergenic | 25.0% |
| !!! | TGGTATTATCTTTGAAACAT+GGG | - | chr7_4:49281355-49281374 | None:intergenic | 25.0% |
| !!! | TTGGTATTATCTTTGAAACA+TGG | - | chr7_4:49281356-49281375 | None:intergenic | 25.0% |
| ! | TTTCAAAGATAATACCAAAC+TGG | + | chr7_4:49281358-49281377 | Msa1159630:CDS | 25.0% |
| ! | GGTGATTATATCTATGAATA+TGG | - | chr7_4:49281613-49281632 | None:intergenic | 25.0% |
| ! | AATGATTTCATCACCTTTAT+AGG | - | chr7_4:49281667-49281686 | None:intergenic | 25.0% |
| ! | TATAAAGGTGATGAAATCAT+TGG | + | chr7_4:49281666-49281685 | Msa1159630:three_prime_UTR | 25.0% |
| ! | ATAAAGGTGATGAAATCATT+GGG | + | chr7_4:49281667-49281686 | Msa1159630:three_prime_UTR | 25.0% |
| TGAAACGGAGGATAAATTAA+TGG | - | chr7_4:49277213-49277232 | None:intergenic | 30.0% | |
| GTTCAAAACTATTGGTACTA+TGG | + | chr7_4:49277716-49277735 | Msa1159630:CDS | 30.0% | |
| !!! | GTTGTTTTGATTGATGATTG+AGG | + | chr7_4:49277872-49277891 | Msa1159630:intron | 30.0% |
| ! | AAATGTGAATTTTGCTGACA+TGG | + | chr7_4:49277896-49277915 | Msa1159630:intron | 30.0% |
| !!! | ATCGCTGATGAAATTTTTTC+AGG | + | chr7_4:49277919-49277938 | Msa1159630:intron | 30.0% |
| !!! | CTGATGAAATTTTTTCAGGT+TGG | + | chr7_4:49277923-49277942 | Msa1159630:intron | 30.0% |
| AATACACATACCTTAATGGT+CGG | - | chr7_4:49277957-49277976 | None:intergenic | 30.0% | |
| ACGAAATACACATACCTTAA+TGG | - | chr7_4:49277961-49277980 | None:intergenic | 30.0% | |
| ! | GTGTATTTCGTCTTCTATTT+TGG | + | chr7_4:49277970-49277989 | Msa1159630:intron | 30.0% |
| CTCAATATCAAACACTATTG+TGG | + | chr7_4:49278155-49278174 | Msa1159630:intron | 30.0% | |
| ! | AAGTAGTTGTAGCATTGAAT+CGG | + | chr7_4:49278288-49278307 | Msa1159630:intron | 30.0% |
| ATAAAAACCGGAAAAAAGAG+AGG | + | chr7_4:49278319-49278338 | Msa1159630:intron | 30.0% | |
| !! | ACACCTTTTGTTTAAAAGCT+AGG | - | chr7_4:49278436-49278455 | None:intergenic | 30.0% |
| TTTAATTCTCTGATACTTCC+CGG | + | chr7_4:49278593-49278612 | Msa1159630:intron | 30.0% | |
| TCCAAAAAATGCCAAAGTAT+CGG | - | chr7_4:49278662-49278681 | None:intergenic | 30.0% | |
| CAAAACAAGGTTTGAATGTT+TGG | - | chr7_4:49278868-49278887 | None:intergenic | 30.0% | |
| CACTCACTATTAAAAACTTC+TGG | - | chr7_4:49278956-49278975 | None:intergenic | 30.0% | |
| TTTCTTATGCTATGAGTTGT+AGG | + | chr7_4:49279172-49279191 | Msa1159630:intron | 30.0% | |
| GCTTATATATCTCATTAGCT+CGG | - | chr7_4:49279199-49279218 | None:intergenic | 30.0% | |
| GAGCTAATGAGATATATAAG+CGG | + | chr7_4:49279198-49279217 | Msa1159630:CDS | 30.0% | |
| AGCTAATGAGATATATAAGC+GGG | + | chr7_4:49279199-49279218 | Msa1159630:CDS | 30.0% | |
| GTATACAGGGAAAAATGTAT+AGG | - | chr7_4:49279363-49279382 | None:intergenic | 30.0% | |
| AGAATACATAGTGAAACAAC+TGG | + | chr7_4:49279469-49279488 | Msa1159630:CDS | 30.0% | |
| GAATACATAGTGAAACAACT+GGG | + | chr7_4:49279470-49279489 | Msa1159630:CDS | 30.0% | |
| !! | AAAATCGTCTCTGAAATTTG+AGG | - | chr7_4:49279674-49279693 | None:intergenic | 30.0% |
| ! | AGACGATTTTGTTCTAATCT+TGG | + | chr7_4:49279684-49279703 | Msa1159630:CDS | 30.0% |
| ATGTCTACTGTTAAATTTGG+TGG | + | chr7_4:49280354-49280373 | Msa1159630:intron | 30.0% | |
| ! | TCACAGCACCTTAATTTTTA+TGG | + | chr7_4:49280453-49280472 | Msa1159630:intron | 30.0% |
| CTAATAACATTTAATCTGCC+AGG | + | chr7_4:49280529-49280548 | Msa1159630:intron | 30.0% | |
| !!! | GTTTTTTATCATCTGAAAGC+TGG | - | chr7_4:49280599-49280618 | None:intergenic | 30.0% |
| GATGATAAAAAACCTCTCAA+AGG | + | chr7_4:49280606-49280625 | Msa1159630:CDS | 30.0% | |
| AATTCACGTCATCAATTCTA+TGG | - | chr7_4:49280749-49280768 | None:intergenic | 30.0% | |
| TATATATATTGCACCCAGTT+TGG | + | chr7_4:49280846-49280865 | Msa1159630:intron | 30.0% | |
| ! | GTGTATTTAGAGAAGTTTTG+TGG | + | chr7_4:49281140-49281159 | Msa1159630:intron | 30.0% |
| ! | ATGTTCTCATCTCTCTTTTA+TGG | + | chr7_4:49281211-49281230 | Msa1159630:intron | 30.0% |
| !! | CAAAGAAATGGATTATGTAC+AGG | - | chr7_4:49281263-49281282 | None:intergenic | 30.0% |
| !! | GGTATTATCTTTGAAACATG+GGG | - | chr7_4:49281354-49281373 | None:intergenic | 30.0% |
| TTCAACTTTCAATGACATCT+AGG | - | chr7_4:49281455-49281474 | None:intergenic | 30.0% | |
| TAAAGGTGATGAAATCATTG+GGG | + | chr7_4:49281668-49281687 | Msa1159630:three_prime_UTR | 30.0% | |
| !! | TGAGAGCGTTTGAAATGAAA+CGG | - | chr7_4:49277228-49277247 | None:intergenic | 35.0% |
| ATCCTTGCGTTCAAAACTAT+TGG | + | chr7_4:49277708-49277727 | Msa1159630:CDS | 35.0% | |
| !!! | TACCAATAGTTTTGAACGCA+AGG | - | chr7_4:49277713-49277732 | None:intergenic | 35.0% |
| !!! | AAATTTTTTCAGGTTGGGAC+TGG | + | chr7_4:49277929-49277948 | Msa1159630:intron | 35.0% |
| CATGTAAGCATCTATTGTTG+TGG | + | chr7_4:49278178-49278197 | Msa1159630:intron | 35.0% | |
| TCGGTCTCTAACATAAAAAC+CGG | + | chr7_4:49278307-49278326 | Msa1159630:intron | 35.0% | |
| AAAGTACAAAGGATACGGTT+GGG | - | chr7_4:49278526-49278545 | None:intergenic | 35.0% | |
| TGACCGATACGTTTATGATA+CGG | - | chr7_4:49278553-49278572 | None:intergenic | 35.0% | |
| TTAATTCTCTGATACTTCCC+GGG | + | chr7_4:49278594-49278613 | Msa1159630:intron | 35.0% | |
| ATACGTGTTTGATAAGTTCC+CGG | - | chr7_4:49278615-49278634 | None:intergenic | 35.0% | |
| GGAACTTATCAAACACGTAT+CGG | + | chr7_4:49278615-49278634 | Msa1159630:intron | 35.0% | |
| !!! | ACCGATACTTTGGCATTTTT+TGG | + | chr7_4:49278658-49278677 | Msa1159630:intron | 35.0% |
| !!! | TTTGGCATTTTTTGGAGTAG+CGG | + | chr7_4:49278666-49278685 | Msa1159630:intron | 35.0% |
| ! | TGGTTTGCAATTTGCATTGT+TGG | + | chr7_4:49278779-49278798 | Msa1159630:intron | 35.0% |
| ! | TGACCTTTTTGAACCTTTTC+TGG | + | chr7_4:49278806-49278825 | Msa1159630:intron | 35.0% |
| ! | GACCTTTTTGAACCTTTTCT+GGG | + | chr7_4:49278807-49278826 | Msa1159630:intron | 35.0% |
| ! | ACCTTTTTGAACCTTTTCTG+GGG | + | chr7_4:49278808-49278827 | Msa1159630:intron | 35.0% |
| TCAACAAATTTCCCCAGAAA+AGG | - | chr7_4:49278822-49278841 | None:intergenic | 35.0% | |
| !! | GAGCGGTTTAAAATTTTCAC+AGG | + | chr7_4:49278897-49278916 | Msa1159630:intron | 35.0% |
| AAGAAATCAGGACGCATTAT+TGG | + | chr7_4:49279247-49279266 | Msa1159630:CDS | 35.0% | |
| ATCATAGGATGTACCCTTTA+CGG | - | chr7_4:49279318-49279337 | None:intergenic | 35.0% | |
| TCACTATGTATTCTTTCGCA+CGG | - | chr7_4:49279463-49279482 | None:intergenic | 35.0% | |
| AAATGGGAACAATTCATGCT+GGG | + | chr7_4:49279519-49279538 | Msa1159630:CDS | 35.0% | |
| ! | CAGCTTCTAAGAGAAAACTT+AGG | + | chr7_4:49279845-49279864 | Msa1159630:intron | 35.0% |
| ! | CTTCTAAGAGAAAACTTAGG+TGG | + | chr7_4:49279848-49279867 | Msa1159630:intron | 35.0% |
| CTAAAGCAAATACTGTTGGA+TGG | - | chr7_4:49279925-49279944 | None:intergenic | 35.0% | |
| ATCTTGACAGCATTGTGTTA+GGG | - | chr7_4:49279967-49279986 | None:intergenic | 35.0% | |
| !! | CACAACTCTAGAATAAAGAC+CGG | + | chr7_4:49280123-49280142 | Msa1159630:intron | 35.0% |
| !! | ACAACTCTAGAATAAAGACC+GGG | + | chr7_4:49280124-49280143 | Msa1159630:intron | 35.0% |
| !!! | AGGTTGAGTTTTGAGAGAAA+AGG | + | chr7_4:49280247-49280266 | Msa1159630:intron | 35.0% |
| CGTCATCAATTCTATGGAAT+TGG | - | chr7_4:49280743-49280762 | None:intergenic | 35.0% | |
| AACCATTAGGAACTCATACA+AGG | + | chr7_4:49281320-49281339 | Msa1159630:CDS | 35.0% | |
| ATCCTTGTATGAGTTCCTAA+TGG | - | chr7_4:49281325-49281344 | None:intergenic | 35.0% | |
| !!! | CGAGTACTGTTTTGTTTCAA+GGG | - | chr7_4:49281419-49281438 | None:intergenic | 35.0% |
| !!! | ACGAGTACTGTTTTGTTTCA+AGG | - | chr7_4:49281420-49281439 | None:intergenic | 35.0% |
| AAACCCTAGAGAGAGAAACT+CGG | + | chr7_4:49277365-49277384 | Msa1159630:five_prime_UTR | 40.0% | |
| TTTCCGAGTTTCTCTCTCTA+GGG | - | chr7_4:49277371-49277390 | None:intergenic | 40.0% | |
| AGAAGACGAGAGAAAATCAC+CGG | - | chr7_4:49277643-49277662 | None:intergenic | 40.0% | |
| ! | GATTTTCTCTCGTCTTCTCT+CGG | + | chr7_4:49277645-49277664 | Msa1159630:CDS | 40.0% |
| ! | TATGGCTGAGAGGTTAGTTA+GGG | + | chr7_4:49277734-49277753 | Msa1159630:intron | 40.0% |
| TGTACTTCACAGATAAGCAC+AGG | - | chr7_4:49278054-49278073 | None:intergenic | 40.0% | |
| TGTTATCATTGTGGACGTGT+CGG | - | chr7_4:49278085-49278104 | None:intergenic | 40.0% | |
| AGCATCTATTGTTGTGGTTG+TGG | + | chr7_4:49278184-49278203 | Msa1159630:intron | 40.0% | |
| AAAACCGGAAAAAAGAGAGG+AGG | + | chr7_4:49278322-49278341 | Msa1159630:intron | 40.0% | |
| !!! | ACTTCCTCCTCTCTTTTTTC+CGG | - | chr7_4:49278329-49278348 | None:intergenic | 40.0% |
| ! | GAAAGTACAAAGGATACGGT+TGG | - | chr7_4:49278527-49278546 | None:intergenic | 40.0% |
| ! | GCTGGAAAGTACAAAGGATA+CGG | - | chr7_4:49278531-49278550 | None:intergenic | 40.0% |
| CAGCCGTATCATAAACGTAT+CGG | + | chr7_4:49278547-49278566 | Msa1159630:intron | 40.0% | |
| TACGTGTTTGATAAGTTCCC+GGG | - | chr7_4:49278614-49278633 | None:intergenic | 40.0% | |
| ! | TATCAAACACGTATCGGTGT+CGG | + | chr7_4:49278621-49278640 | Msa1159630:intron | 40.0% |
| !!! | TTGGCATTTTTTGGAGTAGC+GGG | + | chr7_4:49278667-49278686 | Msa1159630:intron | 40.0% |
| !!! | TGCAGTCTCTCTCTCTTTTT+TGG | - | chr7_4:49278744-49278763 | None:intergenic | 40.0% |
| TCCCCAGAAAAGGTTCAAAA+AGG | - | chr7_4:49278812-49278831 | None:intergenic | 40.0% | |
| !! | CTGGGGAAATTTGTTGAGAA+TGG | + | chr7_4:49278825-49278844 | Msa1159630:intron | 40.0% |
| TGAGAATGGTGTAGAAGTTC+TGG | + | chr7_4:49278839-49278858 | Msa1159630:intron | 40.0% | |
| GAGAATGGTGTAGAAGTTCT+GGG | + | chr7_4:49278840-49278859 | Msa1159630:intron | 40.0% | |
| ATGCTATCTGACAGAGAAGA+AGG | + | chr7_4:49278993-49279012 | Msa1159630:intron | 40.0% | |
| TGCTATCTGACAGAGAAGAA+GGG | + | chr7_4:49278994-49279013 | Msa1159630:intron | 40.0% | |
| TTGAAGATCAGAAGTCTAGC+AGG | + | chr7_4:49279222-49279241 | Msa1159630:CDS | 40.0% | |
| TGAAGATCAGAAGTCTAGCA+GGG | + | chr7_4:49279223-49279242 | Msa1159630:CDS | 40.0% | |
| CAGTGAAGCTCATGTATACA+GGG | - | chr7_4:49279376-49279395 | None:intergenic | 40.0% | |
| TCAGTGAAGCTCATGTATAC+AGG | - | chr7_4:49279377-49279396 | None:intergenic | 40.0% | |
| ! | GAAATTTGCTCGATTGCCAA+TGG | + | chr7_4:49279416-49279435 | Msa1159630:intron | 40.0% |
| CATAGTGAAACAACTGGGTT+TGG | + | chr7_4:49279475-49279494 | Msa1159630:CDS | 40.0% | |
| AAACAACTGGGTTTGGAGAA+TGG | + | chr7_4:49279482-49279501 | Msa1159630:CDS | 40.0% | |
| GAAATGGGAACAATTCATGC+TGG | + | chr7_4:49279518-49279537 | Msa1159630:CDS | 40.0% | |
| AATGGGAACAATTCATGCTG+GGG | + | chr7_4:49279520-49279539 | Msa1159630:CDS | 40.0% | |
| AATTCATGCTGGGGACTTTA+TGG | + | chr7_4:49279529-49279548 | Msa1159630:CDS | 40.0% | |
| GATCTTGACAGCATTGTGTT+AGG | - | chr7_4:49279968-49279987 | None:intergenic | 40.0% | |
| TCAAGATCAAGATCCTACCT+AGG | + | chr7_4:49279980-49279999 | Msa1159630:intron | 40.0% | |
| ATCAAGATCCTACCTAGGAT+GGG | + | chr7_4:49279985-49280004 | Msa1159630:intron | 40.0% | |
| AGATATCCTCAGGTCATTGA+TGG | - | chr7_4:49280212-49280231 | None:intergenic | 40.0% | |
| AGTTGTTCAAACTCATAGGC+TGG | - | chr7_4:49280319-49280338 | None:intergenic | 40.0% | |
| !! | CTGTTAAATTTGGTGGTGTC+TGG | + | chr7_4:49280361-49280380 | Msa1159630:intron | 40.0% |
| AATTGATATGGGACTTCTCC+TGG | - | chr7_4:49280550-49280569 | None:intergenic | 40.0% | |
| ACTGCTGCAGCAATTGATAT+GGG | - | chr7_4:49280561-49280580 | None:intergenic | 40.0% | |
| AACTGCTGCAGCAATTGATA+TGG | - | chr7_4:49280562-49280581 | None:intergenic | 40.0% | |
| ATATATTGCACCCAGTTTGG+TGG | + | chr7_4:49280849-49280868 | Msa1159630:intron | 40.0% | |
| ACAATTATCGCCACCAAACT+GGG | - | chr7_4:49280862-49280881 | None:intergenic | 40.0% | |
| AACAATTATCGCCACCAAAC+TGG | - | chr7_4:49280863-49280882 | None:intergenic | 40.0% | |
| CTTCAACAGGATTTGAACTG+TGG | + | chr7_4:49280974-49280993 | Msa1159630:intron | 40.0% | |
| ! | GTGGATCTGTCATTTGCAAA+AGG | + | chr7_4:49280993-49281012 | Msa1159630:intron | 40.0% |
| GCAGATATATCAGTTGCTAC+AGG | + | chr7_4:49281285-49281304 | Msa1159630:intron | 40.0% | |
| AATACCAAACTGGTATGCGA+AGG | + | chr7_4:49281368-49281387 | Msa1159630:CDS | 40.0% | |
| !! | TTTTGTTTCAAGGGCTGCAA+AGG | - | chr7_4:49281410-49281429 | None:intergenic | 40.0% |
| AGCCTCCTCATTCAAGTATT+TGG | + | chr7_4:49281563-49281582 | Msa1159630:three_prime_UTR | 40.0% | |
| GCCTCCTCATTCAAGTATTT+GGG | + | chr7_4:49281564-49281583 | Msa1159630:three_prime_UTR | 40.0% | |
| CCTCCTCATTCAAGTATTTG+GGG | + | chr7_4:49281565-49281584 | Msa1159630:three_prime_UTR | 40.0% | |
| CTCCTCATTCAAGTATTTGG+GGG | + | chr7_4:49281566-49281585 | Msa1159630:three_prime_UTR | 40.0% | |
| ! | GAGCGTTTGAAATGAAACGG+AGG | - | chr7_4:49277225-49277244 | None:intergenic | 45.0% |
| GTTTCCGAGTTTCTCTCTCT+AGG | - | chr7_4:49277372-49277391 | None:intergenic | 45.0% | |
| ACCGTCATTGCTAAGCCTAA+CGG | + | chr7_4:49277612-49277631 | Msa1159630:CDS | 45.0% | |
| ACCGTTAGGCTTAGCAATGA+CGG | - | chr7_4:49277616-49277635 | None:intergenic | 45.0% | |
| CTATTGGTACTATGGCTGAG+AGG | + | chr7_4:49277724-49277743 | Msa1159630:CDS | 45.0% | |
| ! | CTATGGCTGAGAGGTTAGTT+AGG | + | chr7_4:49277733-49277752 | Msa1159630:intron | 45.0% |
| TATTGTTGTGGTTGTGGCTG+TGG | + | chr7_4:49278190-49278209 | Msa1159630:intron | 45.0% | |
| ACCAAAGGTGAGAAAGAGAG+CGG | + | chr7_4:49278363-49278382 | Msa1159630:intron | 45.0% | |
| ! | GAGAAAGAGAGCGGTGTTAA+CGG | + | chr7_4:49278372-49278391 | Msa1159630:intron | 45.0% |
| ! | GATACGGCTGGAAAGTACAA+AGG | - | chr7_4:49278537-49278556 | None:intergenic | 45.0% |
| CGATACGTTTATGATACGGC+TGG | - | chr7_4:49278549-49278568 | None:intergenic | 45.0% | |
| !!! | TGGCATTTTTTGGAGTAGCG+GGG | + | chr7_4:49278668-49278687 | Msa1159630:intron | 45.0% |
| ! | CTGCAATGCTTCTTTTGACG+TGG | + | chr7_4:49278759-49278778 | Msa1159630:intron | 45.0% |
| GAAGATCAGAAGTCTAGCAG+GGG | + | chr7_4:49279224-49279243 | Msa1159630:CDS | 45.0% | |
| CTTGTCGACAAGCAATGTAG+AGG | - | chr7_4:49279280-49279299 | None:intergenic | 45.0% | |
| TACATGAGCTTCACTGAACC+TGG | + | chr7_4:49279380-49279399 | Msa1159630:intron | 45.0% | |
| TGGCGGTCAATCTGTTGAAA+TGG | + | chr7_4:49279502-49279521 | Msa1159630:CDS | 45.0% | |
| GGCGGTCAATCTGTTGAAAT+GGG | + | chr7_4:49279503-49279522 | Msa1159630:CDS | 45.0% | |
| TCAAGCTGTTAAAGCTGCTC+AGG | + | chr7_4:49279716-49279735 | Msa1159630:CDS | 45.0% | |
| GTGGCAAAAGTGAGAACTCT+GGG | + | chr7_4:49279867-49279886 | Msa1159630:intron | 45.0% | |
| AAAAGTGAGAACTCTGGGCT+GGG | + | chr7_4:49279872-49279891 | Msa1159630:intron | 45.0% | |
| GATCAAGATCCTACCTAGGA+TGG | + | chr7_4:49279984-49280003 | Msa1159630:intron | 45.0% | |
| TCAAGATCCTACCTAGGATG+GGG | + | chr7_4:49279986-49280005 | Msa1159630:intron | 45.0% | |
| !! | ACTCTAGAATAAAGACCGGG+TGG | + | chr7_4:49280127-49280146 | Msa1159630:intron | 45.0% |
| CCATTCACTCTCACTTCTGA+AGG | - | chr7_4:49280156-49280175 | None:intergenic | 45.0% | |
| CCTTCAGAAGTGAGAGTGAA+TGG | + | chr7_4:49280153-49280172 | Msa1159630:intron | 45.0% | |
| AACTGTCACAGACCTTTGAG+AGG | - | chr7_4:49280621-49280640 | None:intergenic | 45.0% | |
| ! | TTCTAAAAGTGGTGGGAGTG+TGG | + | chr7_4:49280801-49280820 | Msa1159630:intron | 45.0% |
| GAGTTGCAGAAGGAACCATT+AGG | + | chr7_4:49281307-49281326 | Msa1159630:CDS | 45.0% | |
| TCTTCCTTCGCATACCAGTT+TGG | - | chr7_4:49281375-49281394 | None:intergenic | 45.0% | |
| AAACTGGTATGCGAAGGAAG+AGG | + | chr7_4:49281374-49281393 | Msa1159630:CDS | 45.0% | |
| CCCCAAATACTTGAATGAGG+AGG | - | chr7_4:49281568-49281587 | None:intergenic | 45.0% | |
| CTCCCCCAAATACTTGAATG+AGG | - | chr7_4:49281571-49281590 | None:intergenic | 45.0% | |
| TTCAAGTATTTGGGGGAGAC+TGG | + | chr7_4:49281573-49281592 | Msa1159630:three_prime_UTR | 45.0% | |
| ! | CTTTTCATCAAGGTCTAGCG+AGG | - | chr7_4:49281634-49281653 | None:intergenic | 45.0% |
| CGAACCTTCGCTAACGAATC+CGG | + | chr7_4:49277525-49277544 | Msa1159630:CDS | 50.0% | |
| ATCACCGGATTCGTTAGCGA+AGG | - | chr7_4:49277532-49277551 | None:intergenic | 50.0% | |
| ACGAACGGGATCGTTATCAC+CGG | - | chr7_4:49277547-49277566 | None:intergenic | 50.0% | |
| GATAACGATCCCGTTCGTGT+CGG | + | chr7_4:49277549-49277568 | Msa1159630:CDS | 50.0% | |
| TCGGTAAGGAGAGGGTTACT+GGG | - | chr7_4:49277579-49277598 | None:intergenic | 50.0% | |
| ATCGGTAAGGAGAGGGTTAC+TGG | - | chr7_4:49277580-49277599 | None:intergenic | 50.0% | |
| AGTAACCCTCTCCTTACCGA+TGG | + | chr7_4:49277579-49277598 | Msa1159630:CDS | 50.0% | |
| GTTAGGCTTAGCAATGACGG+TGG | - | chr7_4:49277613-49277632 | None:intergenic | 50.0% | |
| !! | AAATCACCGGAAGCACCGTT+AGG | - | chr7_4:49277630-49277649 | None:intergenic | 50.0% |
| GCAAGGATCAATCCACGATC+GGG | - | chr7_4:49277696-49277715 | None:intergenic | 50.0% | |
| CGCAAGGATCAATCCACGAT+CGG | - | chr7_4:49277697-49277716 | None:intergenic | 50.0% | |
| ACCGCTCTCTTTCTCACCTT+TGG | - | chr7_4:49278367-49278386 | None:intergenic | 50.0% | |
| ! | AAAGAGAGCGGTGTTAACGG+AGG | + | chr7_4:49278375-49278394 | Msa1159630:intron | 50.0% |
| TAACGGAGGAGAGGGTTATG+TGG | + | chr7_4:49278389-49278408 | Msa1159630:intron | 50.0% | |
| GAGGAGAGGGTTATGTGGAA+CGG | + | chr7_4:49278394-49278413 | Msa1159630:intron | 50.0% | |
| AGAGGGTTATGTGGAACGGA+TGG | + | chr7_4:49278398-49278417 | Msa1159630:intron | 50.0% | |
| CATCTGATACGCACGGGATA+TGG | - | chr7_4:49278501-49278520 | None:intergenic | 50.0% | |
| TTGGGTGCATCTGATACGCA+CGG | - | chr7_4:49278508-49278527 | None:intergenic | 50.0% | |
| !! | GTGTCATGGCACCGATACTT+TGG | + | chr7_4:49278648-49278667 | Msa1159630:intron | 50.0% |
| CAGCATGCTTGACAGATCAG+AGG | - | chr7_4:49279041-49279060 | None:intergenic | 50.0% | |
| GTCTAGCAGGGGAAGAAATC+AGG | + | chr7_4:49279235-49279254 | Msa1159630:CDS | 50.0% | |
| AGACAAGCCACGAACCGTAA+AGG | + | chr7_4:49279301-49279320 | Msa1159630:CDS | 50.0% | |
| GACAAGCCACGAACCGTAAA+GGG | + | chr7_4:49279302-49279321 | Msa1159630:CDS | 50.0% | |
| GATGTACCCTTTACGGTTCG+TGG | - | chr7_4:49279311-49279330 | None:intergenic | 50.0% | |
| ! | TTCCTTCTTGGTGGCTCCAT+TGG | - | chr7_4:49279435-49279454 | None:intergenic | 50.0% |
| GGAGCCACCAAGAAGGAAAT+TGG | + | chr7_4:49279437-49279456 | Msa1159630:CDS | 50.0% | |
| ACGGCCAATTTCCTTCTTGG+TGG | - | chr7_4:49279444-49279463 | None:intergenic | 50.0% | |
| CAACTGGGTTTGGAGAATGG+CGG | + | chr7_4:49279485-49279504 | Msa1159630:CDS | 50.0% | |
| TGCGCTATACGACAAGTCAG+TGG | - | chr7_4:49279827-49279846 | None:intergenic | 50.0% | |
| GGTGGCAAAAGTGAGAACTC+TGG | + | chr7_4:49279866-49279885 | Msa1159630:intron | 50.0% | |
| CAAAAGTGAGAACTCTGGGC+TGG | + | chr7_4:49279871-49279890 | Msa1159630:intron | 50.0% | |
| ! | CACTTCTGAAGGATTCCACC+CGG | - | chr7_4:49280145-49280164 | None:intergenic | 50.0% |
| CTGATGCCATCAATGACCTG+AGG | + | chr7_4:49280203-49280222 | Msa1159630:intron | 50.0% | |
| TGACCTGAGGATATCTACGC+AGG | + | chr7_4:49280216-49280235 | Msa1159630:intron | 50.0% | |
| AGTCCTGCGTAGATATCCTC+AGG | - | chr7_4:49280222-49280241 | None:intergenic | 50.0% | |
| GTTGCTACAGGAGTTGCAGA+AGG | + | chr7_4:49281297-49281316 | Msa1159630:CDS | 50.0% | |
| ! | ATTGGGGCACCTTTGTTGTC+TGG | + | chr7_4:49281684-49281703 | Msa1159630:three_prime_UTR | 50.0% |
| GCTGCAAAACGCATCGGACA+TGG | - | chr7_4:49277394-49277413 | None:intergenic | 55.0% | |
| GCAGTCGCTGCAAAACGCAT+CGG | - | chr7_4:49277400-49277419 | None:intergenic | 55.0% | |
| GATGCAGTCTGTTCGGAGTG+TGG | + | chr7_4:49277459-49277478 | Msa1159630:CDS | 55.0% | |
| TTCGGAGTGTGGTCTCGTCT+TGG | + | chr7_4:49277470-49277489 | Msa1159630:CDS | 55.0% | |
| CCACTCGGAGGTTTCATCGA+TGG | - | chr7_4:49277505-49277524 | None:intergenic | 55.0% | |
| CCATCGATGAAACCTCCGAG+TGG | + | chr7_4:49277502-49277521 | Msa1159630:CDS | 55.0% | |
| GTTAGCGAAGGTTCGCCACT+CGG | - | chr7_4:49277520-49277539 | None:intergenic | 55.0% | |
| AACCCTCTCCTTACCGATGG+TGG | + | chr7_4:49277582-49277601 | Msa1159630:CDS | 55.0% | |
| GACCACCATCGGTAAGGAGA+GGG | - | chr7_4:49277587-49277606 | None:intergenic | 55.0% | |
| AGACCACCATCGGTAAGGAG+AGG | - | chr7_4:49277588-49277607 | None:intergenic | 55.0% | |
| TGGAGAGACCACCATCGGTA+AGG | - | chr7_4:49277593-49277612 | None:intergenic | 55.0% | |
| GCTAAGCCTAACGGTGCTTC+CGG | + | chr7_4:49277621-49277640 | Msa1159630:CDS | 55.0% | |
| TCTCGTCTTCTCTCGGTCGT+TGG | + | chr7_4:49277652-49277671 | Msa1159630:CDS | 55.0% | |
| !! | CGTGGTTCTAATCCCGATCG+TGG | + | chr7_4:49277681-49277700 | Msa1159630:CDS | 55.0% |
| !! | GGGACTGGTTCCGACCATTA+AGG | + | chr7_4:49277944-49277963 | Msa1159630:CDS | 55.0% |
| ! | AGCGGTGTTAACGGAGGAGA+GGG | + | chr7_4:49278381-49278400 | Msa1159630:intron | 55.0% |
| ATACGCACGGGATATGGCAC+GGG | - | chr7_4:49278495-49278514 | None:intergenic | 55.0% | |
| GATACGCACGGGATATGGCA+CGG | - | chr7_4:49278496-49278515 | None:intergenic | 55.0% | |
| TGGGTGCATCTGATACGCAC+GGG | - | chr7_4:49278507-49278526 | None:intergenic | 55.0% | |
| !! | TCGGTGTCGGATACGTGTCA+TGG | + | chr7_4:49278634-49278653 | Msa1159630:intron | 55.0% |
| TGCCAATGGAGCCACCAAGA+AGG | + | chr7_4:49279430-49279449 | Msa1159630:CDS | 55.0% | |
| CGCACGGCCAATTTCCTTCT+TGG | - | chr7_4:49279447-49279466 | None:intergenic | 55.0% | |
| ! | TGAGAACTCTGGGCTGGGTA+GGG | + | chr7_4:49279877-49279896 | Msa1159630:intron | 55.0% |
| GGATATCTACGCAGGACTGC+AGG | + | chr7_4:49280224-49280243 | Msa1159630:intron | 55.0% | |
| TATCTACGCAGGACTGCAGG+AGG | + | chr7_4:49280227-49280246 | Msa1159630:intron | 55.0% | |
| GGAGGGTCTGTGACAGTTCT+TGG | + | chr7_4:49280662-49280681 | Msa1159630:intron | 55.0% | |
| ATTTGGGGGAGACTGGAGAG+TGG | + | chr7_4:49281580-49281599 | Msa1159630:three_prime_UTR | 55.0% | |
| CTCCGAACAGACTGCATCGC+CGG | - | chr7_4:49277457-49277476 | None:intergenic | 60.0% | |
| AACGATCCCGTTCGTGTCGG+TGG | + | chr7_4:49277552-49277571 | Msa1159630:CDS | 60.0% | |
| ACTGGGACCACCGACACGAA+CGG | - | chr7_4:49277562-49277581 | None:intergenic | 60.0% | |
| GACGGTGGAGAGACCACCAT+CGG | - | chr7_4:49277598-49277617 | None:intergenic | 60.0% | |
| CTCGGTCGTTGGCAGAATCG+TGG | + | chr7_4:49277663-49277682 | Msa1159630:CDS | 60.0% | |
| ! | GAGCGGTGTTAACGGAGGAG+AGG | + | chr7_4:49278380-49278399 | Msa1159630:intron | 60.0% |
| TATGGCACGGGAACACAGCG+CGG | - | chr7_4:49278483-49278502 | None:intergenic | 60.0% | |
| ! | GTGAGAACTCTGGGCTGGGT+AGG | + | chr7_4:49279876-49279895 | Msa1159630:intron | 60.0% |
| ATCCTACCTAGGATGGGGCG+TGG | + | chr7_4:49279991-49280010 | Msa1159630:intron | 60.0% | |
| TCCTACCTAGGATGGGGCGT+GGG | + | chr7_4:49279992-49280011 | Msa1159630:intron | 60.0% | |
| AAAAGCCCACGCCCCATCCT+AGG | - | chr7_4:49280000-49280019 | None:intergenic | 60.0% | |
| CAGCGACTGCAAGCGAGCGA+CGG | + | chr7_4:49277410-49277429 | Msa1159630:CDS | 65.0% | |
| GTGGTGTTCGACCACTCCGC+CGG | + | chr7_4:49277435-49277454 | Msa1159630:CDS | 65.0% | |
| CGAACAGACTGCATCGCCGG+CGG | - | chr7_4:49277454-49277473 | None:intergenic | 65.0% | |
| CGCCGGCGATGCAGTCTGTT+CGG | + | chr7_4:49277452-49277471 | Msa1159630:CDS | 65.0% | |
| AGCGAAGGTTCGCCACTCGG+AGG | - | chr7_4:49277517-49277536 | None:intergenic | 65.0% | |
| CTGGGACCACCGACACGAAC+GGG | - | chr7_4:49277561-49277580 | None:intergenic | 65.0% | |
| GGGGAGACTGGAGAGTGGAG+AGG | + | chr7_4:49281585-49281604 | Msa1159630:three_prime_UTR | 65.0% | |
| CGACTGCAAGCGAGCGACGG+AGG | + | chr7_4:49277413-49277432 | Msa1159630:CDS | 70.0% | |
| CTGCAAGCGAGCGACGGAGG+TGG | + | chr7_4:49277416-49277435 | Msa1159630:CDS | 70.0% | |
| AGACTGCATCGCCGGCGGAG+TGG | - | chr7_4:49277449-49277468 | None:intergenic | 70.0% | |
| GCCCACGCCCCATCCTAGGT+AGG | - | chr7_4:49279996-49280015 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49277184 | 49281709 | 49277184 | ID=Msa1159630;Name=Msa1159630 |
| chr7_4 | mRNA | 49277184 | 49281709 | 49277184 | ID=Msa1159630-mRNA-1;Parent=Msa1159630;Name=Msa1159630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=209|1|1|1|1|1|7|287|313 |
| chr7_4 | exon | 49277184 | 49277745 | 49277184 | ID=Msa1159630-mRNA-1:exon:13543;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49277941 | 49277965 | 49277941 | ID=Msa1159630-mRNA-1:exon:13544;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49279194 | 49279323 | 49279194 | ID=Msa1159630-mRNA-1:exon:13545;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49279417 | 49279550 | 49279417 | ID=Msa1159630-mRNA-1:exon:13546;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49279684 | 49279772 | 49279684 | ID=Msa1159630-mRNA-1:exon:13547;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49280551 | 49280627 | 49280551 | ID=Msa1159630-mRNA-1:exon:13548;Parent=Msa1159630-mRNA-1 |
| chr7_4 | exon | 49281289 | 49281709 | 49281289 | ID=Msa1159630-mRNA-1:exon:13549;Parent=Msa1159630-mRNA-1 |
| chr7_4 | five_prime_UTR | 49277184 | 49277392 | 49277184 | ID=Msa1159630-mRNA-1:five_prime_utr;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49277393 | 49277745 | 49277393 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49277941 | 49277965 | 49277941 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49279194 | 49279323 | 49279194 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49279417 | 49279550 | 49279417 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49279684 | 49279772 | 49279684 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49280551 | 49280627 | 49280551 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | CDS | 49281289 | 49281422 | 49281289 | ID=Msa1159630-mRNA-1:cds;Parent=Msa1159630-mRNA-1 |
| chr7_4 | three_prime_UTR | 49281423 | 49281709 | 49281423 | ID=Msa1159630-mRNA-1:three_prime_utr;Parent=Msa1159630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
