AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1074110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074110 MtrunA17_Chr7g0257271 100.000 313 0 0 1 313 1 313 0.0 649
Msa1074110 MtrunA17_Chr3g0091551 92.652 313 23 0 1 313 1 313 0.0 608
Msa1074110 MtrunA17_Chr3g0092431 81.935 310 51 1 1 310 1 305 0.0 528
Msa1074110 MtrunA17_Chr3g0092491 74.760 313 36 1 1 313 1 270 2.82e-164 457
Msa1074110 MtrunA17_Chr1g0173141 81.865 193 34 1 121 313 4 195 5.61e-115 330
Msa1074110 MtrunA17_Chr1g0173151 79.661 118 24 0 1 118 1 118 8.19e-64 197
Msa1074110 MtrunA17_Chr1g0156011 67.416 89 22 2 210 291 28 116 1.36e-29 109
Msa1074110 MtrunA17_Chr5g0403861 34.184 196 121 4 108 301 134 323 1.55e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074110 AT3G10330.1 92.652 313 22 1 1 313 1 312 0.0 603
Msa1074110 AT2G41630.1 84.984 313 46 1 1 313 1 312 0.0 558
Msa1074110 AT3G29380.1 42.767 318 171 5 1 307 1 318 1.72e-83 255
Msa1074110 AT3G57370.1 33.333 369 170 10 6 313 9 362 2.97e-47 162
Msa1074110 AT4G10680.1 34.694 196 102 5 3 195 4 176 2.16e-23 95.1
Msa1074110 AT4G36650.1 34.694 196 120 4 108 301 133 322 8.35e-22 95.9
Msa1074110 AT4G36650.2 35.057 174 105 4 108 279 133 300 6.90e-18 83.6

Find 120 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCACGGCCAATTTCCTTCT+TGG 0.087015 7_2:+71831329 None:intergenic
AATGATTTCATCACCTTTAT+AGG 0.100575 7_2:+71829142 None:intergenic
AGCCTCCTCATTCAAGTATT+TGG 0.120046 7_2:-71829243 Msa1074110:three_prime_UTR
AATTCATGCTGGGGACTTTA+TGG 0.146027 7_2:-71831244 Msa1074110:intron
GCCTCCTCATTCAAGTATTT+GGG 0.259545 7_2:-71829242 Msa1074110:three_prime_UTR
AACTGCTGCAGCAATTGATA+TGG 0.274816 7_2:+71830214 None:intergenic
ACGAAATACACATACCTTAA+TGG 0.290265 7_2:+71833089 None:intergenic
ATCATAGGATGTACCCTTTA+CGG 0.305878 7_2:+71831458 None:intergenic
ATCCTTGCGTTCAAAACTAT+TGG 0.312072 7_2:-71833339 Msa1074110:CDS
ATCGGTAAGGAGAGGGTTAC+TGG 0.314300 7_2:+71833470 None:intergenic
GGTGATTATATCTGTGAATA+TGG 0.327014 7_2:+71829196 None:intergenic
AAGAAATCAGGACGCATTAT+TGG 0.327460 7_2:-71831526 Msa1074110:CDS
GGGACTGGTTCCGACCATTA+AGG 0.332605 7_2:-71833103 Msa1074110:intron
GTTCAAAACTATTGGTACTA+TGG 0.338830 7_2:-71833331 Msa1074110:CDS
TTCCTTCTTGGTGGCTCCAT+TGG 0.342202 7_2:+71831341 None:intergenic
TGAAACGGAGGATAAATTAA+TGG 0.342541 7_2:+71833836 None:intergenic
TGGCGGTCAATCTGTTGAAA+TGG 0.354243 7_2:-71831271 Msa1074110:CDS
AATCAGAAGAATTTGATATA+AGG 0.356784 7_2:-71831022 Msa1074110:intron
GGAGCCACCAAGAAGGAAAT+TGG 0.363081 7_2:-71831336 Msa1074110:CDS
ATTGGGGCACCTTTGTTGTC+TGG 0.381254 7_2:-71829122 Msa1074110:three_prime_UTR
GCTAAGCCTAACGGTGCTTC+CGG 0.382114 7_2:-71833426 Msa1074110:CDS
AAGATAATATTATCCTATAA+AGG 0.383319 7_2:-71829155 Msa1074110:three_prime_UTR
GTCTAGCAGGGGAAGAAATC+AGG 0.396384 7_2:-71831538 Msa1074110:CDS
CATAGTGAAACAACTGGGTT+TGG 0.405085 7_2:-71831298 Msa1074110:CDS
ATAAAGGTGATGAAATCATT+GGG 0.417976 7_2:-71829139 Msa1074110:three_prime_UTR
TATAAAGGTGATGAAATCAT+TGG 0.419152 7_2:-71829140 Msa1074110:three_prime_UTR
TCTTCCTTCGCATACCAGTT+TGG 0.420592 7_2:+71829434 None:intergenic
AGAATACATAGTGAAACAAC+TGG 0.423190 7_2:-71831304 Msa1074110:CDS
TTCAACTTTCAATGACATCT+AGG 0.423539 7_2:+71829354 None:intergenic
GACAAGCCACGAACCGTAAA+GGG 0.425450 7_2:-71831471 Msa1074110:intron
GTTTCCGAGTTTCTCTCTCT+AGG 0.426134 7_2:+71833678 None:intergenic
TTGATTGAAGATGTGTTTGA+TGG 0.427255 7_2:+71833864 None:intergenic
CTGGGACCACCGACACGAAC+GGG 0.431529 7_2:+71833489 None:intergenic
TTCGGAGTGTGGTCTCGTCT+TGG 0.434035 7_2:-71833577 Msa1074110:CDS
TTTCAAAGATAATACCAAAC+TGG 0.453182 7_2:-71829448 Msa1074110:CDS
CGAACCTTCGCTAACGAATC+CGG 0.453434 7_2:-71833522 Msa1074110:CDS
CGCCGGCGATGCAGTCTGTT+CGG 0.458749 7_2:-71833595 Msa1074110:CDS
ATCCTTGTATGAGTTCCTAA+TGG 0.459175 7_2:+71829484 None:intergenic
GATGTACCCTTTACGGTTCG+TGG 0.464597 7_2:+71831465 None:intergenic
GGCGGTCAATCTGTTGAAAT+GGG 0.469059 7_2:-71831270 Msa1074110:CDS
AAACAACTGGGTTTGGAGAA+TGG 0.469627 7_2:-71831291 Msa1074110:CDS
TCAAGCTGTTAAAGCTGCTC+AGG 0.470264 7_2:-71831057 Msa1074110:CDS
TCTCGTCTTCTCTCGGTCGT+TGG 0.473284 7_2:-71833395 Msa1074110:CDS
ACGGCCAATTTCCTTCTTGG+TGG 0.479855 7_2:+71831332 None:intergenic
AAACACAATTAACACATCAA+TGG 0.482079 7_2:-71833782 Msa1074110:five_prime_UTR
CTCCGAACAGACTGCATCGC+CGG 0.488164 7_2:+71833593 None:intergenic
TGAGAGCGTTTGAAATGAAA+CGG 0.497457 7_2:+71833821 None:intergenic
ACTGCTGCAGCAATTGATAT+GGG 0.502657 7_2:+71830215 None:intergenic
TTTCCGAGTTTCTCTCTCTA+GGG 0.508097 7_2:+71833679 None:intergenic
TTGAAGATCAGAAGTCTAGC+AGG 0.514009 7_2:-71831551 Msa1074110:CDS
AACGATCCCGTTCGTGTCGG+TGG 0.516852 7_2:-71833495 Msa1074110:CDS
TGGTATTATCTTTGAAACAT+GGG 0.517194 7_2:+71829454 None:intergenic
CGACTGCAAGCGAGCGACGG+AGG 0.519185 7_2:-71833634 Msa1074110:CDS
AGACAAGCCACGAACCGTAA+AGG 0.530566 7_2:-71831472 Msa1074110:CDS
CTCGGTCGTTGGCAGAATCG+TGG 0.531216 7_2:-71833384 Msa1074110:CDS
GCAGATATATCAGTTGCTAC+AGG 0.531635 7_2:-71829521 Msa1074110:intron
CAGCGACTGCAAGCGAGCGA+CGG 0.532018 7_2:-71833637 Msa1074110:CDS
GAAATGGGAACAATTCATGC+TGG 0.537995 7_2:-71831255 Msa1074110:CDS
CGCAAGGATCAATCCACGAT+CGG 0.538169 7_2:+71833353 None:intergenic
CTGCAAGCGAGCGACGGAGG+TGG 0.539765 7_2:-71833631 Msa1074110:CDS
GCAAGGATCAATCCACGATC+GGG 0.539890 7_2:+71833354 None:intergenic
GAAATTTGCTCGATTGCCAA+TGG 0.542448 7_2:-71831357 Msa1074110:CDS
AAATGGGAACAATTCATGCT+GGG 0.542849 7_2:-71831254 Msa1074110:CDS
CCACTCGGAGGTTTCATCGA+TGG 0.547579 7_2:+71833545 None:intergenic
GTTAGCGAAGGTTCGCCACT+CGG 0.548954 7_2:+71833530 None:intergenic
TTGGTATTATCTTTGAAACA+TGG 0.552826 7_2:+71829453 None:intergenic
AGCTAATGAGATATATAAGC+GGG 0.555073 7_2:-71831574 Msa1074110:CDS
ACCGTTAGGCTTAGCAATGA+CGG 0.566962 7_2:+71833434 None:intergenic
ACTGGGACCACCGACACGAA+CGG 0.567033 7_2:+71833488 None:intergenic
AACCATTAGGAACTCATACA+AGG 0.569754 7_2:-71829486 Msa1074110:CDS
TGGAGAGACCACCATCGGTA+AGG 0.571293 7_2:+71833457 None:intergenic
GCTGCAAAACGCATCGGACA+TGG 0.572012 7_2:+71833656 None:intergenic
GGTATTATCTTTGAAACATG+GGG 0.573323 7_2:+71829455 None:intergenic
AACCCTCTCCTTACCGATGG+TGG 0.575511 7_2:-71833465 Msa1074110:CDS
GAGTTGCAGAAGGAACCATT+AGG 0.581627 7_2:-71829499 Msa1074110:CDS
ACCGTCATTGCTAAGCCTAA+CGG 0.585900 7_2:-71833435 Msa1074110:CDS
CCTCCTCATTCAAGTATTTG+GGG 0.587551 7_2:-71829241 Msa1074110:three_prime_UTR
TGCCAATGGAGCCACCAAGA+AGG 0.588006 7_2:-71831343 Msa1074110:CDS
TCACTATGTATTCTTTCGCA+CGG 0.590768 7_2:+71831313 None:intergenic
AGAAGACGAGAGAAAATCAC+CGG 0.590877 7_2:+71833407 None:intergenic
TAATTATAGTTATTACGAGA+CGG 0.591027 7_2:+71829278 None:intergenic
AATACACATACCTTAATGGT+CGG 0.591568 7_2:+71833093 None:intergenic
TCGGTAAGGAGAGGGTTACT+GGG 0.602364 7_2:+71833471 None:intergenic
GACCACCATCGGTAAGGAGA+GGG 0.603996 7_2:+71833463 None:intergenic
GATGCAGTCTGTTCGGAGTG+TGG 0.606400 7_2:-71833588 Msa1074110:CDS
GCAGTCGCTGCAAAACGCAT+CGG 0.606677 7_2:+71833650 None:intergenic
GCTTATATATCTCATTAGCT+CGG 0.615889 7_2:+71831577 None:intergenic
AGTAACCCTCTCCTTACCGA+TGG 0.620939 7_2:-71833468 Msa1074110:CDS
AATACCAAACTGGTATGCGA+AGG 0.621663 7_2:-71829438 Msa1074110:CDS
ATCACCGGATTCGTTAGCGA+AGG 0.621681 7_2:+71833518 None:intergenic
TGAAGATCAGAAGTCTAGCA+GGG 0.622654 7_2:-71831550 Msa1074110:CDS
GTGGTGTTCGACCACTCCGC+CGG 0.623423 7_2:-71833612 Msa1074110:CDS
AGCGAAGGTTCGCCACTCGG+AGG 0.626549 7_2:+71833533 None:intergenic
AGACTGCATCGCCGGCGGAG+TGG 0.627397 7_2:+71833601 None:intergenic
AACTGTCACAGACCTTTGAG+AGG 0.627588 7_2:+71830155 None:intergenic
AAATCACCGGAAGCACCGTT+AGG 0.631103 7_2:+71833420 None:intergenic
CCCCAAATACTTGAATGAGG+AGG 0.632132 7_2:+71829241 None:intergenic
AAACCCTAGAGAGAGAAACT+CGG 0.633229 7_2:-71833682 Msa1074110:five_prime_UTR
CTCCTCATTCAAGTATTTGG+GGG 0.635364 7_2:-71829240 Msa1074110:three_prime_UTR
AAACTGGTATGCGAAGGAAG+AGG 0.641876 7_2:-71829432 Msa1074110:CDS
GGGGAGACTGGAGAGTGGAG+AGG 0.642780 7_2:-71829221 Msa1074110:three_prime_UTR
CTTGTCGACAAGCAATGTAG+AGG 0.643119 7_2:+71831496 None:intergenic
GTTGCTACAGGAGTTGCAGA+AGG 0.648786 7_2:-71829509 Msa1074110:CDS
ATGAAATGGCCAGACAACAA+AGG 0.650602 7_2:+71829113 None:intergenic
GACGGTGGAGAGACCACCAT+CGG 0.651740 7_2:+71833452 None:intergenic
GATAACGATCCCGTTCGTGT+CGG 0.652271 7_2:-71833498 Msa1074110:CDS
CGTGGTTCTAATCCCGATCG+TGG 0.653015 7_2:-71833366 Msa1074110:CDS
CGAACAGACTGCATCGCCGG+CGG 0.655902 7_2:+71833596 None:intergenic
CTATTGGTACTATGGCTGAG+AGG 0.657231 7_2:-71833323 Msa1074110:intron
AGACCACCATCGGTAAGGAG+AGG 0.659672 7_2:+71833462 None:intergenic
ACGAACGGGATCGTTATCAC+CGG 0.663003 7_2:+71833503 None:intergenic
GAAGATCAGAAGTCTAGCAG+GGG 0.664166 7_2:-71831549 Msa1074110:CDS
AATGGGAACAATTCATGCTG+GGG 0.664649 7_2:-71831253 Msa1074110:CDS
TAAAGGTGATGAAATCATTG+GGG 0.684396 7_2:-71829138 Msa1074110:three_prime_UTR
GAGCTAATGAGATATATAAG+CGG 0.694381 7_2:-71831575 Msa1074110:CDS
GAATACATAGTGAAACAACT+GGG 0.707930 7_2:-71831303 Msa1074110:CDS
GTTAGGCTTAGCAATGACGG+TGG 0.724217 7_2:+71833437 None:intergenic
GAGCGTTTGAAATGAAACGG+AGG 0.735680 7_2:+71833824 None:intergenic
CCATCGATGAAACCTCCGAG+TGG 0.757869 7_2:-71833545 Msa1074110:CDS
CAACTGGGTTTGGAGAATGG+CGG 0.759270 7_2:-71831288 Msa1074110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTAAATTTTTGAATTATTA+TGG - chr7_2:71829720-71829739 Msa1074110:intron 15.0%
!!! TAAAGATAGAAATATTTTGT+TGG - chr7_2:71830338-71830357 Msa1074110:intron 15.0%
!!! CAAGATTGTTTTTTATTTTT+TGG - chr7_2:71832242-71832261 Msa1074110:intron 15.0%
!! ATAAATAATTGAACCTAAAT+AGG + chr7_2:71832622-71832641 None:intergenic 15.0%
!!! AATTTTTTTAAGATGTACAA+AGG - chr7_2:71833145-71833164 Msa1074110:intron 15.0%
!! TAACTTAAATATACATATAG+AGG + chr7_2:71833367-71833386 None:intergenic 15.0%
!!! ATAATATTATCTTTTCATCA+AGG + chr7_2:71833819-71833838 None:intergenic 15.0%
!! AAGATAATATTATCCTATAA+AGG - chr7_2:71833826-71833845 Msa1074110:five_prime_UTR 15.0%
!!! GTGTTAATTGTGTTTTTTTT+CGG + chr7_2:71829194-71829213 None:intergenic 20.0%
!!! AGGAAGTATAATTAGTTAAT+GGG - chr7_2:71830276-71830295 Msa1074110:intron 20.0%
!! ACATGTTAAGAATCTAAAAA+TGG + chr7_2:71830432-71830451 None:intergenic 20.0%
!! ACATGTTAAGAATCTAAAAA+TGG + chr7_2:71830432-71830451 None:intergenic 20.0%
!!! GTTATGTTTTTTTGATGAAA+AGG - chr7_2:71830656-71830675 Msa1074110:intron 20.0%
!!! TTGTTTTGAAAATTTATGAG+CGG - chr7_2:71831087-71831106 Msa1074110:CDS 20.0%
!!! AAAAAACTACAACTTTTTCA+AGG + chr7_2:71831308-71831327 None:intergenic 20.0%
!! TAAAAAACACTAACTTTACA+TGG + chr7_2:71831349-71831368 None:intergenic 20.0%
!! CTATATGTTAAAAGAATCAT+AGG + chr7_2:71831541-71831560 None:intergenic 20.0%
!! AATCAGAAGAATTTGATATA+AGG - chr7_2:71831959-71831978 Msa1074110:intron 20.0%
!!! TGCAGTATAATTTTTCATTT+TGG + chr7_2:71832309-71832328 None:intergenic 20.0%
!! ATTATGTCTACTGTTAAATT+TGG - chr7_2:71832559-71832578 Msa1074110:intron 20.0%
!! TAAAGAAGCCATAAAAATTA+AGG + chr7_2:71832672-71832691 None:intergenic 20.0%
!!! AGTTCTTTTTTTGTTTTTTG+AGG - chr7_2:71832845-71832864 Msa1074110:intron 20.0%
!!! GTTCTTTTTTTGTTTTTTGA+GGG - chr7_2:71832846-71832865 Msa1074110:intron 20.0%
!!! TTCAAATAAGTTTCTAAAAG+TGG - chr7_2:71832997-71833016 Msa1074110:intron 20.0%
!! TAATTATAGTTATTACGAGA+CGG + chr7_2:71833706-71833725 None:intergenic 20.0%
! AAACACAATTAACACATCAA+TGG - chr7_2:71829199-71829218 Msa1074110:three_prime_UTR 25.0%
!!! TGATGAAATTTTTTCAGGTT+GGG - chr7_2:71829858-71829877 Msa1074110:intron 25.0%
! TTCTCAAATTGTTATCATTG+TGG + chr7_2:71830028-71830047 None:intergenic 25.0%
! TGTTAAGTTATATACTCTCT+TGG - chr7_2:71830151-71830170 Msa1074110:intron 25.0%
! CAACTACTTATCTTAATAAG+TGG + chr7_2:71830211-71830230 None:intergenic 25.0%
!! GAGGAAGTATAATTAGTTAA+TGG - chr7_2:71830275-71830294 Msa1074110:intron 25.0%
! TCAAACTACAAACATTATCT+AGG + chr7_2:71830904-71830923 None:intergenic 25.0%
!! GCTCATAAATTTTCAAAACA+AGG + chr7_2:71831088-71831107 None:intergenic 25.0%
!! AAGTTCACTTTGTTATAAGT+TGG - chr7_2:71831127-71831146 Msa1074110:intron 25.0%
!! TTTCTTATGCTATGATTTGT+AGG - chr7_2:71831380-71831399 Msa1074110:intron 25.0%
! TATACAGGGAAAAATGTATA+GGG + chr7_2:71831570-71831589 None:intergenic 25.0%
!! ATTTCTATTTGAAATTCACC+AGG + chr7_2:71831609-71831628 None:intergenic 25.0%
! AAAGTCTAAAGAAAAAAGTC+AGG + chr7_2:71831994-71832013 None:intergenic 25.0%
! ATAATGAAATAGATATCCAC+TGG - chr7_2:71832016-71832035 Msa1074110:intron 25.0%
! TAAACTAAAGCAAATACTGT+TGG + chr7_2:71832137-71832156 None:intergenic 25.0%
!! AACAGTATTTGCTTTAGTTT+AGG - chr7_2:71832136-71832155 Msa1074110:intron 25.0%
!! ACAGTATTTGCTTTAGTTTA+GGG - chr7_2:71832137-71832156 Msa1074110:intron 25.0%
! TAGTTTAGTCATTAATCAGA+TGG - chr7_2:71832386-71832405 Msa1074110:intron 25.0%
! AATAAGTTGTTCAAACTCAT+AGG + chr7_2:71832531-71832550 None:intergenic 25.0%
! AGGTGAACTATCATTATATA+TGG + chr7_2:71832602-71832621 None:intergenic 25.0%
! TAATGATAGTTCACCTATTT+AGG - chr7_2:71832606-71832625 Msa1074110:intron 25.0%
!!! TTTTTTATCATCTGAAAGCT+GGG + chr7_2:71832806-71832825 None:intergenic 25.0%
! TGGAAAACATGAAATACAAA+CGG - chr7_2:71832889-71832908 Msa1074110:intron 25.0%
!!! TTGATGACGTGAATTTTATT+TGG - chr7_2:71832961-71832980 Msa1074110:intron 25.0%
!! AAATAAGTTTCTAAAAGTGG+TGG - chr7_2:71833000-71833019 Msa1074110:intron 25.0%
!! AATAAGTTTCTAAAAGTGGT+GGG - chr7_2:71833001-71833020 Msa1074110:intron 25.0%
!!! AGTGTGGATGAATTTTTTAT+TGG - chr7_2:71833024-71833043 Msa1074110:intron 25.0%
!!! CGATAATTGTTTTGAAAACA+AGG - chr7_2:71833079-71833098 Msa1074110:intron 25.0%
! AATGTAAAAATCACTTCAAC+AGG - chr7_2:71833168-71833187 Msa1074110:intron 25.0%
! CAATTAATCACATAATTCAG+TGG + chr7_2:71833242-71833261 None:intergenic 25.0%
!!! TGTATTTAGAGAAGTTTTGT+GGG - chr7_2:71833316-71833335 Msa1074110:intron 25.0%
!!! ATTTGTTTTTCAATCACATG+TGG + chr7_2:71833344-71833363 None:intergenic 25.0%
! ATATATCTGCAACAAAGAAA+TGG + chr7_2:71833450-71833469 None:intergenic 25.0%
!!! TGGTATTATCTTTGAAACAT+GGG + chr7_2:71833530-71833549 None:intergenic 25.0%
!!! TTGGTATTATCTTTGAAACA+TGG + chr7_2:71833531-71833550 None:intergenic 25.0%
! TTTCAAAGATAATACCAAAC+TGG - chr7_2:71833533-71833552 Msa1074110:CDS 25.0%
! AATGATTTCATCACCTTTAT+AGG + chr7_2:71833842-71833861 None:intergenic 25.0%
! TATAAAGGTGATGAAATCAT+TGG - chr7_2:71833841-71833860 Msa1074110:five_prime_UTR 25.0%
! ATAAAGGTGATGAAATCATT+GGG - chr7_2:71833842-71833861 Msa1074110:five_prime_UTR 25.0%
TGAAACGGAGGATAAATTAA+TGG + chr7_2:71829148-71829167 None:intergenic 30.0%
GTTCAAAACTATTGGTACTA+TGG - chr7_2:71829650-71829669 Msa1074110:intron 30.0%
!!! GTTGTTTTGATTGATGATTG+AGG - chr7_2:71829806-71829825 Msa1074110:intron 30.0%
! AAATGTGAATTTTGCTGACA+TGG - chr7_2:71829830-71829849 Msa1074110:intron 30.0%
!!! ATCGCTGATGAAATTTTTTC+AGG - chr7_2:71829853-71829872 Msa1074110:intron 30.0%
!!! CTGATGAAATTTTTTCAGGT+TGG - chr7_2:71829857-71829876 Msa1074110:intron 30.0%
AATACACATACCTTAATGGT+CGG + chr7_2:71829891-71829910 None:intergenic 30.0%
ACGAAATACACATACCTTAA+TGG + chr7_2:71829895-71829914 None:intergenic 30.0%
! GTGTATTTCGTCTTCTATTT+TGG - chr7_2:71829904-71829923 Msa1074110:intron 30.0%
CTCAATATCAAACACTATTG+TGG - chr7_2:71830089-71830108 Msa1074110:intron 30.0%
! AAGTAGTTGTAGCATTGAAT+CGG - chr7_2:71830222-71830241 Msa1074110:CDS 30.0%
ATAAAAACCGGAAAAAAGAG+AGG - chr7_2:71830253-71830272 Msa1074110:intron 30.0%
TACCCTTAGTTAATTACCAA+AGG - chr7_2:71830548-71830567 Msa1074110:intron 30.0%
! CACCTTTGGTAATTAACTAA+GGG + chr7_2:71830553-71830572 None:intergenic 30.0%
! TCACCTTTGGTAATTAACTA+AGG + chr7_2:71830554-71830573 None:intergenic 30.0%
!! AACCCTAGCTTTTAAACAAA+AGG - chr7_2:71830630-71830649 Msa1074110:intron 30.0%
!! CACCTTTTGTTTAAAAGCTA+GGG + chr7_2:71830635-71830654 None:intergenic 30.0%
!! ACACCTTTTGTTTAAAAGCT+AGG + chr7_2:71830636-71830655 None:intergenic 30.0%
TTTAATTCTCTGATACTTCC+CGG - chr7_2:71830800-71830819 Msa1074110:intron 30.0%
TCCAAAAAATGCCAAAGTAT+CGG + chr7_2:71830869-71830888 None:intergenic 30.0%
ACTACAAACATTATCTAGGA+AGG + chr7_2:71830900-71830919 None:intergenic 30.0%
! TGACCTTTTTGAACCTTTTT+TGG - chr7_2:71831013-71831032 Msa1074110:intron 30.0%
! GACCTTTTTGAACCTTTTTT+GGG - chr7_2:71831014-71831033 Msa1074110:intron 30.0%
!! ACCTTTTTGAACCTTTTTTG+GGG - chr7_2:71831015-71831034 Msa1074110:intron 30.0%
TCAACAAATTTCCCCAAAAA+AGG + chr7_2:71831029-71831048 None:intergenic 30.0%
CAAAACAAGGTTTGAATGTT+TGG + chr7_2:71831075-71831094 None:intergenic 30.0%
CACTCACTATTAAAAACTTC+TGG + chr7_2:71831163-71831182 None:intergenic 30.0%
GCTTATATATCTCATTAGCT+CGG + chr7_2:71831407-71831426 None:intergenic 30.0%
GAGCTAATGAGATATATAAG+CGG - chr7_2:71831406-71831425 Msa1074110:intron 30.0%
AGCTAATGAGATATATAAGC+GGG - chr7_2:71831407-71831426 Msa1074110:intron 30.0%
GTATACAGGGAAAAATGTAT+AGG + chr7_2:71831571-71831590 None:intergenic 30.0%
AGAATACATAGTGAAACAAC+TGG - chr7_2:71831677-71831696 Msa1074110:intron 30.0%
GAATACATAGTGAAACAACT+GGG - chr7_2:71831678-71831697 Msa1074110:intron 30.0%
!! AAAATCGTCTCTGAAATTTG+AGG + chr7_2:71831882-71831901 None:intergenic 30.0%
! AGACGATTTTGTTCTAATCT+TGG - chr7_2:71831892-71831911 Msa1074110:intron 30.0%
ATGTCTACTGTTAAATTTGG+TGG - chr7_2:71832562-71832581 Msa1074110:intron 30.0%
! TCACAGCACCTTAATTTTTA+TGG - chr7_2:71832661-71832680 Msa1074110:intron 30.0%
CTAATAACATTTAATCTGCC+AGG - chr7_2:71832737-71832756 Msa1074110:intron 30.0%
!!! GTTTTTTATCATCTGAAAGC+TGG + chr7_2:71832807-71832826 None:intergenic 30.0%
GATGATAAAAAACCTCTCAA+AGG - chr7_2:71832814-71832833 Msa1074110:intron 30.0%
!!! TTTTTTGTTTTTTGAGGGAG+AGG - chr7_2:71832851-71832870 Msa1074110:intron 30.0%
!!! TTTTTGTTTTTTGAGGGAGA+GGG - chr7_2:71832852-71832871 Msa1074110:intron 30.0%
AATTCACGTCATCAATTCTA+TGG + chr7_2:71832956-71832975 None:intergenic 30.0%
TATATATATTGCACCCAGTT+CGG - chr7_2:71833053-71833072 Msa1074110:intron 30.0%
! GTGTATTTAGAGAAGTTTTG+TGG - chr7_2:71833315-71833334 Msa1074110:intron 30.0%
! ATGTTCTCATCTCTCTTTTA+TGG - chr7_2:71833386-71833405 Msa1074110:CDS 30.0%
!! CAAAGAAATGGATTATGTAC+AGG + chr7_2:71833438-71833457 None:intergenic 30.0%
!! GGTATTATCTTTGAAACATG+GGG + chr7_2:71833529-71833548 None:intergenic 30.0%
TTCAACTTTCAATGACATCT+AGG + chr7_2:71833630-71833649 None:intergenic 30.0%
GGTGATTATATCTGTGAATA+TGG + chr7_2:71833788-71833807 None:intergenic 30.0%
TAAAGGTGATGAAATCATTG+GGG - chr7_2:71833843-71833862 Msa1074110:five_prime_UTR 30.0%
!! TGAGAGCGTTTGAAATGAAA+CGG + chr7_2:71829163-71829182 None:intergenic 35.0%
ATCCTTGCGTTCAAAACTAT+TGG - chr7_2:71829642-71829661 Msa1074110:intron 35.0%
!!! TACCAATAGTTTTGAACGCA+AGG + chr7_2:71829647-71829666 None:intergenic 35.0%
!!! AAATTTTTTCAGGTTGGGAC+TGG - chr7_2:71829863-71829882 Msa1074110:intron 35.0%
CATGTAAGCATCTATTGTTG+TGG - chr7_2:71830112-71830131 Msa1074110:intron 35.0%
TCGGTCTCTAACATAAAAAC+CGG - chr7_2:71830241-71830260 Msa1074110:intron 35.0%
!!! CTTTTTAACTTGTGCCTTGA+GGG + chr7_2:71830317-71830336 None:intergenic 35.0%
TGACCGATACGTTTATGATA+CGG + chr7_2:71830760-71830779 None:intergenic 35.0%
TTAATTCTCTGATACTTCCC+GGG - chr7_2:71830801-71830820 Msa1074110:intron 35.0%
ATACGTGTTTGATAAGTTCC+CGG + chr7_2:71830822-71830841 None:intergenic 35.0%
GGAACTTATCAAACACGTAT+TGG - chr7_2:71830822-71830841 Msa1074110:intron 35.0%
! TATCAAACACGTATTGGTGT+CGG - chr7_2:71830828-71830847 Msa1074110:intron 35.0%
!!! ACCGATACTTTGGCATTTTT+TGG - chr7_2:71830865-71830884 Msa1074110:intron 35.0%
!!! TTTGGCATTTTTTGGAGTAG+CGG - chr7_2:71830873-71830892 Msa1074110:intron 35.0%
! TGGTTTGCAATTTGCATTGT+TGG - chr7_2:71830986-71831005 Msa1074110:intron 35.0%
TCCCCAAAAAAGGTTCAAAA+AGG + chr7_2:71831019-71831038 None:intergenic 35.0%
!! TTGGGGAAATTTGTTGAGAA+TGG - chr7_2:71831032-71831051 Msa1074110:CDS 35.0%
!! GAGCGGTTTAAAATTTTCAC+AGG - chr7_2:71831104-71831123 Msa1074110:intron 35.0%
AAGAAATCAGGACGCATTAT+TGG - chr7_2:71831455-71831474 Msa1074110:intron 35.0%
ATCATAGGATGTACCCTTTA+CGG + chr7_2:71831526-71831545 None:intergenic 35.0%
TCACTATGTATTCTTTCGCA+CGG + chr7_2:71831671-71831690 None:intergenic 35.0%
AAATGGGAACAATTCATGCT+GGG - chr7_2:71831727-71831746 Msa1074110:intron 35.0%
! CAGCTTCTAAGAGAAAACTT+AGG - chr7_2:71832053-71832072 Msa1074110:intron 35.0%
! CTTCTAAGAGAAAACTTAGG+TGG - chr7_2:71832056-71832075 Msa1074110:intron 35.0%
CTAAAGCAAATACTGTTGGA+TGG + chr7_2:71832133-71832152 None:intergenic 35.0%
ATCTTGACAGCATTGTGTTA+GGG + chr7_2:71832175-71832194 None:intergenic 35.0%
!! CACAACTCTAGAATAAAGAC+CGG - chr7_2:71832331-71832350 Msa1074110:intron 35.0%
!! ACAACTCTAGAATAAAGACC+GGG - chr7_2:71832332-71832351 Msa1074110:intron 35.0%
!!! AGGTTGAGTTTTGAGAGAAA+AGG - chr7_2:71832455-71832474 Msa1074110:intron 35.0%
CGTCATCAATTCTATGGAAT+TGG + chr7_2:71832950-71832969 None:intergenic 35.0%
AACCATTAGGAACTCATACA+AGG - chr7_2:71833495-71833514 Msa1074110:CDS 35.0%
ATCCTTGTATGAGTTCCTAA+TGG + chr7_2:71833500-71833519 None:intergenic 35.0%
!!! CGAGTACTGTTTTGTTTCAA+GGG + chr7_2:71833594-71833613 None:intergenic 35.0%
!!! ACGAGTACTGTTTTGTTTCA+AGG + chr7_2:71833595-71833614 None:intergenic 35.0%
AAACCCTAGAGAGAGAAACT+CGG - chr7_2:71829299-71829318 Msa1074110:three_prime_UTR 40.0%
TTTCCGAGTTTCTCTCTCTA+GGG + chr7_2:71829305-71829324 None:intergenic 40.0%
AGAAGACGAGAGAAAATCAC+CGG + chr7_2:71829577-71829596 None:intergenic 40.0%
! GATTTTCTCTCGTCTTCTCT+CGG - chr7_2:71829579-71829598 Msa1074110:intron 40.0%
! TATGGCTGAGAGGTTAGTTA+GGG - chr7_2:71829668-71829687 Msa1074110:intron 40.0%
TGTACTTCACAGATAAGCAC+AGG + chr7_2:71829988-71830007 None:intergenic 40.0%
TGTTATCATTGTGGACGTGT+CGG + chr7_2:71830019-71830038 None:intergenic 40.0%
AGCATCTATTGTTGTGGTTG+TGG - chr7_2:71830118-71830137 Msa1074110:intron 40.0%
AAAACCGGAAAAAAGAGAGG+AGG - chr7_2:71830256-71830275 Msa1074110:intron 40.0%
!!! ACTTCCTCCTCTCTTTTTTC+CGG + chr7_2:71830263-71830282 None:intergenic 40.0%
AATGTTATCTTGTGCCCTCA+AGG - chr7_2:71830300-71830319 Msa1074110:intron 40.0%
!!! GCTTTTTAACTTGTGCCTTG+AGG + chr7_2:71830318-71830337 None:intergenic 40.0%
ATTCTTAACATGTGCCCTGA+GGG - chr7_2:71830439-71830458 Msa1074110:intron 40.0%
AAGATAAGATTTCGCCCTCA+GGG + chr7_2:71830456-71830475 None:intergenic 40.0%
AAAGATAAGATTTCGCCCTC+AGG + chr7_2:71830457-71830476 None:intergenic 40.0%
ATTCTTAACATGTGCCCTGA+GGG - chr7_2:71830439-71830458 Msa1074110:intron 40.0%
AAAGTACAGAGGATACGGTT+GGG + chr7_2:71830733-71830752 None:intergenic 40.0%
CAGCCGTATCATAAACGTAT+CGG - chr7_2:71830754-71830773 Msa1074110:intron 40.0%
TACGTGTTTGATAAGTTCCC+GGG + chr7_2:71830821-71830840 None:intergenic 40.0%
!!! TTGGCATTTTTTGGAGTAGC+GGG - chr7_2:71830874-71830893 Msa1074110:intron 40.0%
!!! TGCAGTCTCTCTCTCTTTTT+TGG + chr7_2:71830951-71830970 None:intergenic 40.0%
TGAGAATGGTGTAGAAGTTC+TGG - chr7_2:71831046-71831065 Msa1074110:CDS 40.0%
GAGAATGGTGTAGAAGTTCT+GGG - chr7_2:71831047-71831066 Msa1074110:CDS 40.0%
ATGCTATCTGACAGAGAAGA+AGG - chr7_2:71831200-71831219 Msa1074110:intron 40.0%
TGCTATCTGACAGAGAAGAA+GGG - chr7_2:71831201-71831220 Msa1074110:intron 40.0%
TTGAAGATCAGAAGTCTAGC+AGG - chr7_2:71831430-71831449 Msa1074110:intron 40.0%
TGAAGATCAGAAGTCTAGCA+GGG - chr7_2:71831431-71831450 Msa1074110:intron 40.0%
CAGTGAAGCTCATGTATACA+GGG + chr7_2:71831584-71831603 None:intergenic 40.0%
TCAGTGAAGCTCATGTATAC+AGG + chr7_2:71831585-71831604 None:intergenic 40.0%
! GAAATTTGCTCGATTGCCAA+TGG - chr7_2:71831624-71831643 Msa1074110:intron 40.0%
CATAGTGAAACAACTGGGTT+TGG - chr7_2:71831683-71831702 Msa1074110:intron 40.0%
AAACAACTGGGTTTGGAGAA+TGG - chr7_2:71831690-71831709 Msa1074110:intron 40.0%
GAAATGGGAACAATTCATGC+TGG - chr7_2:71831726-71831745 Msa1074110:intron 40.0%
AATGGGAACAATTCATGCTG+GGG - chr7_2:71831728-71831747 Msa1074110:intron 40.0%
AATTCATGCTGGGGACTTTA+TGG - chr7_2:71831737-71831756 Msa1074110:intron 40.0%
GATCTTGACAGCATTGTGTT+AGG + chr7_2:71832176-71832195 None:intergenic 40.0%
TCAAGATCAAGATCCTACCT+AGG - chr7_2:71832188-71832207 Msa1074110:intron 40.0%
ATCAAGATCCTACCTAGGAT+GGG - chr7_2:71832193-71832212 Msa1074110:intron 40.0%
!! CCATTCACTCTCACTTTTGA+AGG + chr7_2:71832364-71832383 None:intergenic 40.0%
CCTTCAAAAGTGAGAGTGAA+TGG - chr7_2:71832361-71832380 Msa1074110:intron 40.0%
AGATGTACTCAGGTCATTGA+TGG + chr7_2:71832420-71832439 None:intergenic 40.0%
AGTTGTTCAAACTCATAGGC+TGG + chr7_2:71832527-71832546 None:intergenic 40.0%
!! CTGTTAAATTTGGTGGTGTC+TGG - chr7_2:71832569-71832588 Msa1074110:intron 40.0%
AATTGATATGGGACTTCTCC+TGG + chr7_2:71832758-71832777 None:intergenic 40.0%
ACTGCTGCAGCAATTGATAT+GGG + chr7_2:71832769-71832788 None:intergenic 40.0%
AACTGCTGCAGCAATTGATA+TGG + chr7_2:71832770-71832789 None:intergenic 40.0%
CTTCAACAGGATTTGAACTG+TGG - chr7_2:71833181-71833200 Msa1074110:intron 40.0%
! GTGGATCTGTCATTTGCAAA+AGG - chr7_2:71833200-71833219 Msa1074110:intron 40.0%
GCAGATATATCAGTTGCTAC+AGG - chr7_2:71833460-71833479 Msa1074110:CDS 40.0%
AATACCAAACTGGTATGCGA+AGG - chr7_2:71833543-71833562 Msa1074110:CDS 40.0%
!! TTTTGTTTCAAGGGCTGCAA+AGG + chr7_2:71833585-71833604 None:intergenic 40.0%
AGCCTCCTCATTCAAGTATT+TGG - chr7_2:71833738-71833757 Msa1074110:five_prime_UTR 40.0%
GCCTCCTCATTCAAGTATTT+GGG - chr7_2:71833739-71833758 Msa1074110:five_prime_UTR 40.0%
CCTCCTCATTCAAGTATTTG+GGG - chr7_2:71833740-71833759 Msa1074110:five_prime_UTR 40.0%
CTCCTCATTCAAGTATTTGG+GGG - chr7_2:71833741-71833760 Msa1074110:five_prime_UTR 40.0%
! GAGCGTTTGAAATGAAACGG+AGG + chr7_2:71829160-71829179 None:intergenic 45.0%
GTTTCCGAGTTTCTCTCTCT+AGG + chr7_2:71829306-71829325 None:intergenic 45.0%
ACCGTCATTGCTAAGCCTAA+CGG - chr7_2:71829546-71829565 Msa1074110:intron 45.0%
ACCGTTAGGCTTAGCAATGA+CGG + chr7_2:71829550-71829569 None:intergenic 45.0%
CTATTGGTACTATGGCTGAG+AGG - chr7_2:71829658-71829677 Msa1074110:intron 45.0%
! CTATGGCTGAGAGGTTAGTT+AGG - chr7_2:71829667-71829686 Msa1074110:intron 45.0%
TATTGTTGTGGTTGTGGCTG+TGG - chr7_2:71830124-71830143 Msa1074110:intron 45.0%
GATTCTTAACATGTGCCCTG+AGG - chr7_2:71830438-71830457 Msa1074110:intron 45.0%
GATTCTTAACATGTGCCCTG+AGG - chr7_2:71830438-71830457 Msa1074110:intron 45.0%
!! AGTGTTAACTTGTGCCCTCA+GGG + chr7_2:71830529-71830548 None:intergenic 45.0%
!! TAGTGTTAACTTGTGCCCTC+AGG + chr7_2:71830530-71830549 None:intergenic 45.0%
ACCAAAGGTGAGAAAGAGAG+CGG - chr7_2:71830563-71830582 Msa1074110:intron 45.0%
! GAGAAAGAGAGCGGTGTTAA+CGG - chr7_2:71830572-71830591 Msa1074110:intron 45.0%
! GAAAGTACAGAGGATACGGT+TGG + chr7_2:71830734-71830753 None:intergenic 45.0%
! GCTGGAAAGTACAGAGGATA+CGG + chr7_2:71830738-71830757 None:intergenic 45.0%
CGATACGTTTATGATACGGC+TGG + chr7_2:71830756-71830775 None:intergenic 45.0%
! CTGCAATGCTTCTTTTGACG+TGG - chr7_2:71830966-71830985 Msa1074110:intron 45.0%
GAAGATCAGAAGTCTAGCAG+GGG - chr7_2:71831432-71831451 Msa1074110:intron 45.0%
CTTGTCGACAAGCAATGTAG+AGG + chr7_2:71831488-71831507 None:intergenic 45.0%
TACATGAGCTTCACTGAACC+TGG - chr7_2:71831588-71831607 Msa1074110:intron 45.0%
TGGCGGTCAATCTGTTGAAA+TGG - chr7_2:71831710-71831729 Msa1074110:intron 45.0%
GGCGGTCAATCTGTTGAAAT+GGG - chr7_2:71831711-71831730 Msa1074110:intron 45.0%
TCAAGCTGTTAAAGCTGCTC+AGG - chr7_2:71831924-71831943 Msa1074110:intron 45.0%
GTGGCAAAAGTGAGAACTCT+GGG - chr7_2:71832075-71832094 Msa1074110:intron 45.0%
AAAAGTGAGAACTCTGGGCT+GGG - chr7_2:71832080-71832099 Msa1074110:intron 45.0%
GATCAAGATCCTACCTAGGA+TGG - chr7_2:71832192-71832211 Msa1074110:intron 45.0%
TCAAGATCCTACCTAGGATG+GGG - chr7_2:71832194-71832213 Msa1074110:intron 45.0%
!! ACTCTAGAATAAAGACCGGG+TGG - chr7_2:71832335-71832354 Msa1074110:intron 45.0%
!! CACTTTTGAAGGATTCCACC+CGG + chr7_2:71832353-71832372 None:intergenic 45.0%
AACTGTCACAGACCTTTGAG+AGG + chr7_2:71832829-71832848 None:intergenic 45.0%
! TTCTAAAAGTGGTGGGAGTG+TGG - chr7_2:71833008-71833027 Msa1074110:intron 45.0%
ATATATTGCACCCAGTTCGG+TGG - chr7_2:71833056-71833075 Msa1074110:intron 45.0%
ACAATTATCGCCACCGAACT+GGG + chr7_2:71833069-71833088 None:intergenic 45.0%
AACAATTATCGCCACCGAAC+TGG + chr7_2:71833070-71833089 None:intergenic 45.0%
GAGTTGCAGAAGGAACCATT+AGG - chr7_2:71833482-71833501 Msa1074110:CDS 45.0%
TCTTCCTTCGCATACCAGTT+TGG + chr7_2:71833550-71833569 None:intergenic 45.0%
AAACTGGTATGCGAAGGAAG+AGG - chr7_2:71833549-71833568 Msa1074110:CDS 45.0%
CCCCAAATACTTGAATGAGG+AGG + chr7_2:71833743-71833762 None:intergenic 45.0%
CTCCCCCAAATACTTGAATG+AGG + chr7_2:71833746-71833765 None:intergenic 45.0%
TTCAAGTATTTGGGGGAGAC+TGG - chr7_2:71833748-71833767 Msa1074110:five_prime_UTR 45.0%
! CTTTTCATCAAGGTCTAGCG+AGG + chr7_2:71833809-71833828 None:intergenic 45.0%
CGAACCTTCGCTAACGAATC+CGG - chr7_2:71829459-71829478 Msa1074110:CDS 50.0%
ATCACCGGATTCGTTAGCGA+AGG + chr7_2:71829466-71829485 None:intergenic 50.0%
ACGAACGGGATCGTTATCAC+CGG + chr7_2:71829481-71829500 None:intergenic 50.0%
GATAACGATCCCGTTCGTGT+CGG - chr7_2:71829483-71829502 Msa1074110:CDS 50.0%
TCGGTAAGGAGAGGGTTACT+GGG + chr7_2:71829513-71829532 None:intergenic 50.0%
ATCGGTAAGGAGAGGGTTAC+TGG + chr7_2:71829514-71829533 None:intergenic 50.0%
AGTAACCCTCTCCTTACCGA+TGG - chr7_2:71829513-71829532 Msa1074110:CDS 50.0%
GTTAGGCTTAGCAATGACGG+TGG + chr7_2:71829547-71829566 None:intergenic 50.0%
!! AAATCACCGGAAGCACCGTT+AGG + chr7_2:71829564-71829583 None:intergenic 50.0%
GCAAGGATCAATCCACGATC+GGG + chr7_2:71829630-71829649 None:intergenic 50.0%
CGCAAGGATCAATCCACGAT+CGG + chr7_2:71829631-71829650 None:intergenic 50.0%
ACCGCTCTCTTTCTCACCTT+TGG + chr7_2:71830567-71830586 None:intergenic 50.0%
! AAAGAGAGCGGTGTTAACGG+AGG - chr7_2:71830575-71830594 Msa1074110:intron 50.0%
TAACGGAGGAGAGGGTTATG+TGG - chr7_2:71830589-71830608 Msa1074110:intron 50.0%
GAGGAGAGGGTTATGTGGAA+CGG - chr7_2:71830594-71830613 Msa1074110:intron 50.0%
AGAGGGTTATGTGGAACGGA+TGG - chr7_2:71830598-71830617 Msa1074110:intron 50.0%
ACGGGATACGCAAAATGGCA+CGG + chr7_2:71830696-71830715 None:intergenic 50.0%
TACGCACGGGATACGCAAAA+TGG + chr7_2:71830701-71830720 None:intergenic 50.0%
TTGGGTGCATCTGATACGCA+CGG + chr7_2:71830715-71830734 None:intergenic 50.0%
! GATACGGCTGGAAAGTACAG+AGG + chr7_2:71830744-71830763 None:intergenic 50.0%
!! TTGGTGTCGGATACGTGTCA+TGG - chr7_2:71830841-71830860 Msa1074110:intron 50.0%
!! GTGTCATGGCACCGATACTT+TGG - chr7_2:71830855-71830874 Msa1074110:intron 50.0%
CAGCATGCTTGACAGATCAG+AGG + chr7_2:71831248-71831267 None:intergenic 50.0%
GTCTAGCAGGGGAAGAAATC+AGG - chr7_2:71831443-71831462 Msa1074110:intron 50.0%
AGACAAGCCACGAACCGTAA+AGG - chr7_2:71831509-71831528 Msa1074110:CDS 50.0%
GACAAGCCACGAACCGTAAA+GGG - chr7_2:71831510-71831529 Msa1074110:CDS 50.0%
GATGTACCCTTTACGGTTCG+TGG + chr7_2:71831519-71831538 None:intergenic 50.0%
! TTCCTTCTTGGTGGCTCCAT+TGG + chr7_2:71831643-71831662 None:intergenic 50.0%
GGAGCCACCAAGAAGGAAAT+TGG - chr7_2:71831645-71831664 Msa1074110:intron 50.0%
ACGGCCAATTTCCTTCTTGG+TGG + chr7_2:71831652-71831671 None:intergenic 50.0%
CAACTGGGTTTGGAGAATGG+CGG - chr7_2:71831693-71831712 Msa1074110:intron 50.0%
TGCGCTATATGACAAGCCAG+TGG + chr7_2:71832035-71832054 None:intergenic 50.0%
GGTGGCAAAAGTGAGAACTC+TGG - chr7_2:71832074-71832093 Msa1074110:intron 50.0%
CAAAAGTGAGAACTCTGGGC+TGG - chr7_2:71832079-71832098 Msa1074110:intron 50.0%
TGACCTGAGTACATCTACGC+AGG - chr7_2:71832424-71832443 Msa1074110:intron 50.0%
AGTCCTGCGTAGATGTACTC+AGG + chr7_2:71832430-71832449 None:intergenic 50.0%
AGAGGGTCTGTGACAGTTCT+TGG - chr7_2:71832869-71832888 Msa1074110:intron 50.0%
GTTGCTACAGGAGTTGCAGA+AGG - chr7_2:71833472-71833491 Msa1074110:CDS 50.0%
! ATTGGGGCACCTTTGTTGTC+TGG - chr7_2:71833859-71833878 Msa1074110:five_prime_UTR 50.0%
GCTGCAAAACGCATCGGACA+TGG + chr7_2:71829328-71829347 None:intergenic 55.0%
GCAGTCGCTGCAAAACGCAT+CGG + chr7_2:71829334-71829353 None:intergenic 55.0%
GATGCAGTCTGTTCGGAGTG+TGG - chr7_2:71829393-71829412 Msa1074110:exon 55.0%
TTCGGAGTGTGGTCTCGTCT+TGG - chr7_2:71829404-71829423 Msa1074110:exon 55.0%
CCACTCGGAGGTTTCATCGA+TGG + chr7_2:71829439-71829458 None:intergenic 55.0%
CCATCGATGAAACCTCCGAG+TGG - chr7_2:71829436-71829455 Msa1074110:CDS 55.0%
GTTAGCGAAGGTTCGCCACT+CGG + chr7_2:71829454-71829473 None:intergenic 55.0%
AACCCTCTCCTTACCGATGG+TGG - chr7_2:71829516-71829535 Msa1074110:CDS 55.0%
GACCACCATCGGTAAGGAGA+GGG + chr7_2:71829521-71829540 None:intergenic 55.0%
AGACCACCATCGGTAAGGAG+AGG + chr7_2:71829522-71829541 None:intergenic 55.0%
TGGAGAGACCACCATCGGTA+AGG + chr7_2:71829527-71829546 None:intergenic 55.0%
GCTAAGCCTAACGGTGCTTC+CGG - chr7_2:71829555-71829574 Msa1074110:intron 55.0%
TCTCGTCTTCTCTCGGTCGT+TGG - chr7_2:71829586-71829605 Msa1074110:intron 55.0%
!! CGTGGTTCTAATCCCGATCG+TGG - chr7_2:71829615-71829634 Msa1074110:intron 55.0%
!! GGGACTGGTTCCGACCATTA+AGG - chr7_2:71829878-71829897 Msa1074110:intron 55.0%
! AGCGGTGTTAACGGAGGAGA+GGG - chr7_2:71830581-71830600 Msa1074110:intron 55.0%
CGGGATACGCAAAATGGCAC+GGG + chr7_2:71830695-71830714 None:intergenic 55.0%
TGGGTGCATCTGATACGCAC+GGG + chr7_2:71830714-71830733 None:intergenic 55.0%
TGCCAATGGAGCCACCAAGA+AGG - chr7_2:71831638-71831657 Msa1074110:intron 55.0%
CGCACGGCCAATTTCCTTCT+TGG + chr7_2:71831655-71831674 None:intergenic 55.0%
! TGAGAACTCTGGGCTGGGTA+GGG - chr7_2:71832085-71832104 Msa1074110:intron 55.0%
GTACATCTACGCAGGACTGC+AGG - chr7_2:71832432-71832451 Msa1074110:intron 55.0%
ATTTGGGGGAGACTGGAGAG+TGG - chr7_2:71833755-71833774 Msa1074110:five_prime_UTR 55.0%
CTCCGAACAGACTGCATCGC+CGG + chr7_2:71829391-71829410 None:intergenic 60.0%
AACGATCCCGTTCGTGTCGG+TGG - chr7_2:71829486-71829505 Msa1074110:CDS 60.0%
ACTGGGACCACCGACACGAA+CGG + chr7_2:71829496-71829515 None:intergenic 60.0%
GACGGTGGAGAGACCACCAT+CGG + chr7_2:71829532-71829551 None:intergenic 60.0%
CTCGGTCGTTGGCAGAATCG+TGG - chr7_2:71829597-71829616 Msa1074110:intron 60.0%
! GAGCGGTGTTAACGGAGGAG+AGG - chr7_2:71830580-71830599 Msa1074110:intron 60.0%
AATGGCACGGGAACACAGCG+CGG + chr7_2:71830683-71830702 None:intergenic 60.0%
! GTGAGAACTCTGGGCTGGGT+AGG - chr7_2:71832084-71832103 Msa1074110:intron 60.0%
ATCCTACCTAGGATGGGGCG+TGG - chr7_2:71832199-71832218 Msa1074110:intron 60.0%
TCCTACCTAGGATGGGGCGT+GGG - chr7_2:71832200-71832219 Msa1074110:intron 60.0%
AAAAGCCCACGCCCCATCCT+AGG + chr7_2:71832208-71832227 None:intergenic 60.0%
CATCTACGCAGGACTGCAGG+AGG - chr7_2:71832435-71832454 Msa1074110:intron 60.0%
CAGCGACTGCAAGCGAGCGA+CGG - chr7_2:71829344-71829363 Msa1074110:three_prime_UTR 65.0%
GTGGTGTTCGACCACTCCGC+CGG - chr7_2:71829369-71829388 Msa1074110:three_prime_UTR 65.0%
CGAACAGACTGCATCGCCGG+CGG + chr7_2:71829388-71829407 None:intergenic 65.0%
CGCCGGCGATGCAGTCTGTT+CGG - chr7_2:71829386-71829405 Msa1074110:three_prime_UTR 65.0%
AGCGAAGGTTCGCCACTCGG+AGG + chr7_2:71829451-71829470 None:intergenic 65.0%
CTGGGACCACCGACACGAAC+GGG + chr7_2:71829495-71829514 None:intergenic 65.0%
GGGGAGACTGGAGAGTGGAG+AGG - chr7_2:71833760-71833779 Msa1074110:five_prime_UTR 65.0%
CGACTGCAAGCGAGCGACGG+AGG - chr7_2:71829347-71829366 Msa1074110:three_prime_UTR 70.0%
CTGCAAGCGAGCGACGGAGG+TGG - chr7_2:71829350-71829369 Msa1074110:three_prime_UTR 70.0%
AGACTGCATCGCCGGCGGAG+TGG + chr7_2:71829383-71829402 None:intergenic 70.0%
GCCCACGCCCCATCCTAGGT+AGG + chr7_2:71832204-71832223 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71829119 71833884 71829119 ID=Msa1074110;Name=Msa1074110
chr7_2 mRNA 71829119 71833884 71829119 ID=Msa1074110-mRNA-1;Parent=Msa1074110;Name=Msa1074110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=208|1|1|1|1|1|7|287|313
chr7_2 exon 71829119 71829539 71829119 ID=Msa1074110-mRNA-1:exon:16395;Parent=Msa1074110-mRNA-1
chr7_2 exon 71830168 71830244 71830168 ID=Msa1074110-mRNA-1:exon:16394;Parent=Msa1074110-mRNA-1
chr7_2 exon 71831023 71831111 71831023 ID=Msa1074110-mRNA-1:exon:16393;Parent=Msa1074110-mRNA-1
chr7_2 exon 71831245 71831378 71831245 ID=Msa1074110-mRNA-1:exon:16392;Parent=Msa1074110-mRNA-1
chr7_2 exon 71831472 71831601 71831472 ID=Msa1074110-mRNA-1:exon:16391;Parent=Msa1074110-mRNA-1
chr7_2 exon 71833104 71833128 71833104 ID=Msa1074110-mRNA-1:exon:16390;Parent=Msa1074110-mRNA-1
chr7_2 exon 71833324 71833884 71833324 ID=Msa1074110-mRNA-1:exon:16389;Parent=Msa1074110-mRNA-1
chr7_2 five_prime_UTR 71833677 71833884 71833677 ID=Msa1074110-mRNA-1:five_prime_utr;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71833324 71833676 71833324 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71833104 71833128 71833104 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71831472 71831601 71831472 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71831245 71831378 71831245 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71831023 71831111 71831023 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71830168 71830244 71830168 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 CDS 71829406 71829539 71829406 ID=Msa1074110-mRNA-1:cds;Parent=Msa1074110-mRNA-1
chr7_2 three_prime_UTR 71829119 71829405 71829119 ID=Msa1074110-mRNA-1:three_prime_utr;Parent=Msa1074110-mRNA-1
Gene Sequence

>Msa1074110

ATGTCCGATGCGTTTTGCAGCGACTGCAAGCGAGCGACGGAGGTGGTGTTCGACCACTCCGCCGGCGATGCAGTCTGTTCGGAGTGTGGTCTCGTCTTGGAATCTCACTCCATCGATGAAACCTCCGAGTGGCGAACCTTCGCTAACGAATCCGGTGATAACGATCCCGTTCGTGTCGGTGGTCCCAGTAACCCTCTCCTTACCGATGGTGGTCTCTCCACCGTCATTGCTAAGCCTAACGGTGCTTCCGGTGATTTTCTCTCGTCTTCTCTCGGTCGTTGGCAGAATCGTGGTTCTAATCCCGATCGTGGATTGATCCTTGCGTTCAAAACTATTGGTACTATGGCTGAGAGGTTGGGACTGGTTCCGACCATTAAGGACCGAGCTAATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGCAGGGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCACGAACCGTAAAGGAAATTTGCTCGATTGCCAATGGAGCCACCAAGAAGGAAATTGGCCGTGCGAAAGAATACATAGTGAAACAACTGGGTTTGGAGAATGGCGGTCAATCTGTTGAAATGGGAACAATTCATGCTGGGGACTTTATGAGACGATTTTGTTCTAATCTTGGTATGAATCATCAAGCTGTTAAAGCTGCTCAGGAATCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGAAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATTACCCAGCTTTCAGATGATAAAAAACCTCTCAAAGATATATCAGTTGCTACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTCTATCCCCATGTTTCAAAGATAATACCAAACTGGTATGCGAAGGAAGAGGATCTGAAGAACCTTTGCAGCCCTTGA

Protein sequence

>Msa1074110

MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLGLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP*