AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1159720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159720 MtrunA17_Chr7g0257121 77.143 70 13 1 2 71 4 70 2.86e-32 111
Msa1159720 MtrunA17_Chr1g0159641 53.571 56 26 0 3 58 5 60 9.02e-16 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1159720 AT1G77320.1 43.396 53 30 0 2 54 4 56 3.86e-11 57.4
Msa1159720 AT1G77320.3 43.396 53 30 0 2 54 4 56 4.14e-11 57.4

Find 136 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGTTAGGTCCTCTTTA+TGG 0.208714 7_4:-49370144 Msa1159720:three_prime_UTR
TATATGGTTCTTCCTTTCTC+TGG 0.215900 7_4:-49373184 Msa1159720:three_prime_UTR
TTGAGCACCTCCTGTTCTTC+AGG 0.249195 7_4:+49369769 None:intergenic
TGAGGAGGATTGTAAGTCTA+AGG 0.252399 7_4:-49370073 Msa1159720:three_prime_UTR
CTCCGTGCCCTCTTTGAATA+TGG 0.278265 7_4:+49369805 None:intergenic
TCATAGTCACAATATTAATA+TGG 0.282443 7_4:+49371771 None:intergenic
TCTGCCTCTTTAACAAATAA+TGG 0.287870 7_4:+49371296 None:intergenic
GCAGCAAGTGAAGGCTTGTT+TGG 0.291299 7_4:+49374745 None:intergenic
CAAATTTGTCAGGCGGAAAT+AGG 0.302662 7_4:+49375426 None:intergenic
GCAATGAATTGAACTTTAAT+CGG 0.302946 7_4:-49371247 Msa1159720:three_prime_UTR
CATAGCCAGGAAAAGGATAT+TGG 0.309491 7_4:-49371443 Msa1159720:three_prime_UTR
CATAAAATTTACAACCTGTT+TGG 0.315540 7_4:+49373137 None:intergenic
AGATGAATTAATGATTGAAA+TGG 0.324358 7_4:-49374294 Msa1159720:three_prime_UTR
GATGAATTAATGATTGAAAT+GGG 0.328140 7_4:-49374293 Msa1159720:three_prime_UTR
AACCATTCATAAGTAACTAT+TGG 0.328810 7_4:+49373250 None:intergenic
AAGTAACTATTGGTTTCTTC+AGG 0.330112 7_4:+49373260 None:intergenic
GTATAAGACGGCAAAACTTT+GGG 0.339519 7_4:-49371795 Msa1159720:three_prime_UTR
GTCTTATACTTATCACCTTC+AGG 0.351041 7_4:+49371809 None:intergenic
CTTCACTTGCTGCTTAACTA+TGG 0.356671 7_4:-49374735 Msa1159720:exon
GAAAAGCTTATTCTACAAAA+TGG 0.360168 7_4:-49373033 Msa1159720:three_prime_UTR
TTATGTCTTGCAGTGGGCTT+TGG 0.361969 7_4:-49373287 Msa1159720:intron
AATGGAGAAGCTAAGTAATA+TGG 0.365938 7_4:-49371138 Msa1159720:three_prime_UTR
ATTAAAGTTCAATTCATTGC+TGG 0.372968 7_4:+49371250 None:intergenic
GATAAAGATCCACTCTCAAC+AGG 0.374142 7_4:+49371500 None:intergenic
AAGAAAGCAATGGAGGCATT+TGG 0.384504 7_4:-49370012 Msa1159720:three_prime_UTR
TGTTCCTCAAGAGTCATATA+TGG 0.385478 7_4:-49373200 Msa1159720:three_prime_UTR
ACGGATAGCATGTCTGAATA+AGG 0.387128 7_4:-49371531 Msa1159720:intron
TATCATTTAAATACAAGCAT+TGG 0.401217 7_4:+49371096 None:intergenic
AGTATAAGACGGCAAAACTT+TGG 0.402788 7_4:-49371796 Msa1159720:three_prime_UTR
CAGCAAGTGAAGGCTTGTTT+GGG 0.403127 7_4:+49374746 None:intergenic
ATCATTTAAATACAAGCATT+GGG 0.405407 7_4:+49371097 None:intergenic
TGTTTGGGCTCCAGAGTATA+AGG 0.415227 7_4:-49374216 Msa1159720:intron
ATATGGTTCTTCCTTTCTCT+GGG 0.421830 7_4:-49373183 Msa1159720:three_prime_UTR
TTAATATTGTGACTATGAAA+TGG 0.422555 7_4:-49371766 Msa1159720:three_prime_UTR
GATTGCAGAATATCACTTGT+TGG 0.423098 7_4:-49371176 Msa1159720:three_prime_UTR
AATTCATTGCTGGTCTGTAA+TGG 0.425432 7_4:+49371260 None:intergenic
ATAGCCAGGAAAAGGATATT+GGG 0.436818 7_4:-49371442 Msa1159720:three_prime_UTR
TGTTCCATTATTTGTTAAAG+AGG 0.438999 7_4:-49371300 Msa1159720:three_prime_UTR
AACCAATAGTTACTTATGAA+TGG 0.439724 7_4:-49373252 Msa1159720:three_prime_UTR
GTCATCAGACTCAGAATCAT+TGG 0.442424 7_4:+49371217 None:intergenic
GAATAGACTCACATTTCTGT+TGG 0.448184 7_4:+49371047 None:intergenic
TAATAATCAACCTGAAGAAC+AGG 0.454496 7_4:-49369779 Msa1159720:three_prime_UTR
AAAGAAGAATCTAGAAATGA+AGG 0.461492 7_4:-49370325 Msa1159720:three_prime_UTR
CTTGAATGATCCGGTTAGAA+AGG 0.471395 7_4:-49369947 Msa1159720:three_prime_UTR
ATTACGCTGTTAAAACCTCT+TGG 0.471475 7_4:-49370772 Msa1159720:three_prime_UTR
TGAGGCTTATAAGCTTTATG+AGG 0.472144 7_4:-49370091 Msa1159720:three_prime_UTR
AGAACCGCATCAAATTTGTC+AGG 0.474476 7_4:+49375416 None:intergenic
GATGACTTGAGGGCAAAGTT+AGG 0.480088 7_4:-49370156 Msa1159720:three_prime_UTR
CAATGAATTGAACTTTAATC+GGG 0.484868 7_4:-49371246 Msa1159720:three_prime_UTR
CTCAACAGCGCAACATAGCC+AGG 0.485889 7_4:-49371456 Msa1159720:three_prime_UTR
AGTTGGTGGAGGCATCCAAT+AGG 0.485896 7_4:-49370353 Msa1159720:three_prime_UTR
TGGCTTTGATGCGGATCAAA+AGG 0.486466 7_4:-49374690 Msa1159720:intron
AAGATGTCGAAGTTATTTGA+AGG 0.489072 7_4:-49375473 Msa1159720:CDS
GCGCGTTTGCTTCGAGATTG+CGG 0.499064 7_4:-49370229 Msa1159720:three_prime_UTR
GCAATGCTCAGATGAGCATC+AGG 0.499805 7_4:-49373224 Msa1159720:three_prime_UTR
ATTTGAATCTGCGGCTCTTG+AGG 0.500270 7_4:+49371400 None:intergenic
TTCAGATAAGCGCAAAGAGA+TGG 0.504618 7_4:-49373055 Msa1159720:intron
TGTTACGTACTTGAATGATC+CGG 0.504932 7_4:-49369956 Msa1159720:three_prime_UTR
GATATTGGGATAATGCAATC+TGG 0.505586 7_4:-49371428 Msa1159720:three_prime_UTR
TATCTTCACGTAACGTGACT+AGG 0.506059 7_4:-49371481 Msa1159720:three_prime_UTR
AGTAATATGGTGCGTAAAGG+TGG 0.506996 7_4:-49371125 Msa1159720:three_prime_UTR
TGTGTGACTGGAATCCAAAC+AGG 0.507328 7_4:-49373151 Msa1159720:intron
AACTAGTATATTTGAATCTG+CGG 0.510360 7_4:+49371391 None:intergenic
AGGATCTACATTTAAAGACT+TGG 0.512293 7_4:+49371361 None:intergenic
ATCTCTAAGCATCATGAGAT+GGG 0.513813 7_4:-49370039 Msa1159720:three_prime_UTR
GGGTTAAAGATCTGTGTGAC+TGG 0.518889 7_4:-49373163 Msa1159720:three_prime_UTR
AAACATTGAGAACCACTTCA+AGG 0.518932 7_4:-49369923 Msa1159720:three_prime_UTR
AAGAATCGACGATGACTTGA+GGG 0.519266 7_4:-49370166 Msa1159720:three_prime_UTR
CATTGTACCGTTGTAGAACA+TGG 0.519318 7_4:+49370717 None:intergenic
GCTGTCAAAATACTTGCCTC+TGG 0.520073 7_4:-49374710 Msa1159720:three_prime_UTR
GGCTTATAAGCTTTATGAGG+AGG 0.520574 7_4:-49370088 Msa1159720:three_prime_UTR
GGAATTAAAGAGACGACAAA+AGG 0.520847 7_4:-49370208 Msa1159720:three_prime_UTR
TGTTAAAACCTCTTGGCTTG+AGG 0.521313 7_4:-49370765 Msa1159720:three_prime_UTR
TGAATTAATGATTGAAATGG+GGG 0.522521 7_4:-49374291 Msa1159720:three_prime_UTR
TTCTGCAATCTGCTAAATAC+CGG 0.522822 7_4:+49371189 None:intergenic
AACATTGAGAACCACTTCAA+GGG 0.524205 7_4:-49369922 Msa1159720:three_prime_UTR
ATGTACCAGACCTTATACTC+TGG 0.528773 7_4:+49374206 None:intergenic
AGCGCAACATAGCCAGGAAA+AGG 0.529842 7_4:-49371450 Msa1159720:three_prime_UTR
CAGATCTTTAACCCAGAGAA+AGG 0.530794 7_4:+49373172 None:intergenic
GTGAAGGCTTGTTTGGGCAG+AGG 0.531750 7_4:+49374752 None:intergenic
CATCTCTAAGCATCATGAGA+TGG 0.536901 7_4:-49370040 Msa1159720:three_prime_UTR
GTTCTTCAATGTGCTAAAGA+AGG 0.540178 7_4:-49374779 Msa1159720:CDS
CACTTGCTGCTTAACTATGG+AGG 0.540521 7_4:-49374732 Msa1159720:exon
AGTTGACGCACATAGTAGTC+GGG 0.543297 7_4:-49371073 Msa1159720:three_prime_UTR
CTTCTTCTCTCTATCTCTCG+TGG 0.544769 7_4:+49375501 None:intergenic
CTAAGTAATATGGTGCGTAA+AGG 0.550132 7_4:-49371128 Msa1159720:three_prime_UTR
ATGAATTAATGATTGAAATG+GGG 0.551763 7_4:-49374292 Msa1159720:three_prime_UTR
GATGAATCTATTGCTCAAAG+AGG 0.554272 7_4:-49371740 Msa1159720:intron
AGATGTCGAAGTTATTTGAA+GGG 0.554510 7_4:-49375472 Msa1159720:CDS
CTCCATATTCAAAGAGGGCA+CGG 0.564640 7_4:-49369807 Msa1159720:three_prime_UTR
TTGATTATGCTGCTTCTCGT+AGG 0.565113 7_4:-49370263 Msa1159720:three_prime_UTR
CTGAGTCTGATGACAATGAC+CGG 0.572569 7_4:-49371208 Msa1159720:three_prime_UTR
GTAGTGAGAACTGTTGCTCT+AGG 0.573509 7_4:-49370800 Msa1159720:three_prime_UTR
AGATCCACTCTCAACAGGGT+TGG 0.574398 7_4:+49371505 None:intergenic
AAGTTGACGCACATAGTAGT+CGG 0.576552 7_4:-49371074 Msa1159720:three_prime_UTR
TTGACCGCCGTTCTCTTCAA+CGG 0.577697 7_4:+49375388 None:intergenic
TAAGAATCGACGATGACTTG+AGG 0.578181 7_4:-49370167 Msa1159720:three_prime_UTR
ATTGAACTTTAATCGGGCTG+TGG 0.578792 7_4:-49371240 Msa1159720:three_prime_UTR
GCGGAAATAGGTGTCGCGAT+AGG 0.579534 7_4:+49375438 None:intergenic
GAGGAGGATTGTAAGTCTAA+GGG 0.581483 7_4:-49370072 Msa1159720:three_prime_UTR
TTCAATGTGCTAAAGAAGGA+AGG 0.584964 7_4:-49374775 Msa1159720:CDS
TCAAAATCATCCCCTTGAAG+TGG 0.585463 7_4:+49369911 None:intergenic
ATGAGCCTCCATATTCAAAG+AGG 0.589361 7_4:-49369813 Msa1159720:three_prime_UTR
AATATGGTGCGTAAAGGTGG+AGG 0.590391 7_4:-49371122 Msa1159720:three_prime_UTR
ACGACAAAAGGAGATGGAGA+TGG 0.591211 7_4:-49370196 Msa1159720:three_prime_UTR
CTCAAAGCCGTTGAAGAGAA+CGG 0.591219 7_4:-49375395 Msa1159720:CDS
AAAGAGACGACAAAAGGAGA+TGG 0.591489 7_4:-49370202 Msa1159720:three_prime_UTR
AAGCTTATTCTACAAAATGG+TGG 0.594920 7_4:-49373030 Msa1159720:three_prime_UTR
GATGGGATTTAAGAAAGCAA+TGG 0.597083 7_4:-49370022 Msa1159720:three_prime_UTR
GAGTCCAACCCTGTTGAGAG+TGG 0.598020 7_4:-49371509 Msa1159720:three_prime_UTR
TGTTGACTTAGCACAAGTGC+TGG 0.601901 7_4:-49370286 Msa1159720:three_prime_UTR
ACTTGCCTCTGGCTTTGATG+CGG 0.603394 7_4:-49374699 Msa1159720:three_prime_UTR
CGTGCCCTCTTTGAATATGG+AGG 0.603747 7_4:+49369808 None:intergenic
TCCGCCTGACAAATTTGATG+CGG 0.608919 7_4:-49375420 Msa1159720:CDS
CATAGTTAAGCAGCAAGTGA+AGG 0.611723 7_4:+49374736 None:intergenic
AGAACCATATATGACTCTTG+AGG 0.617430 7_4:+49373196 None:intergenic
TGAAGGTGATAAGTATAAGA+CGG 0.620903 7_4:-49371807 Msa1159720:three_prime_UTR
TATAAGACGGCAAAACTTTG+GGG 0.621024 7_4:-49371794 Msa1159720:three_prime_UTR
TTTGTAGTTGATAAATCACA+AGG 0.624187 7_4:-49369545 Msa1159720:three_prime_UTR
ACAAAGTTTAAATCTGATGA+CGG 0.625224 7_4:+49374251 None:intergenic
CATCTCATGATGCTTAGAGA+TGG 0.626228 7_4:+49370041 None:intergenic
ACATTGAGAACCACTTCAAG+GGG 0.633314 7_4:-49369921 Msa1159720:three_prime_UTR
ACCGCATCAAATTTGTCAGG+CGG 0.635534 7_4:+49375419 None:intergenic
GGGATTTAAGAAAGCAATGG+AGG 0.638447 7_4:-49370019 Msa1159720:three_prime_UTR
TAATCAACCTGAAGAACAGG+AGG 0.638857 7_4:-49369776 Msa1159720:three_prime_UTR
AACAAGTCCATGTTCTACAA+CGG 0.651160 7_4:-49370724 Msa1159720:three_prime_UTR
TTGATCCGCATCAAAGCCAG+AGG 0.652199 7_4:+49374694 None:intergenic
TCATTGCTGGTCTGTAATGG+AGG 0.662412 7_4:+49371263 None:intergenic
TGAGCCTCCATATTCAAAGA+GGG 0.665688 7_4:-49369812 Msa1159720:three_prime_UTR
ATCACAATCCTCAAGCCAAG+AGG 0.666970 7_4:+49370757 None:intergenic
TTGTAGTTGATAAATCACAA+GGG 0.668080 7_4:-49369544 Msa1159720:three_prime_UTR
ATAAAGATCCACTCTCAACA+GGG 0.671428 7_4:+49371501 None:intergenic
TATTCAAAGAGGGCACGGAG+TGG 0.704676 7_4:-49369802 Msa1159720:three_prime_UTR
AACGGCGGTCAAGTTCACAT+CGG 0.709798 7_4:-49375377 Msa1159720:CDS
GAATTAATGATTGAAATGGG+GGG 0.725048 7_4:-49374290 Msa1159720:three_prime_UTR
AAAGCCGTTGAAGAGAACGG+CGG 0.786017 7_4:-49375392 Msa1159720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATTTGTTAATATAAG+CGG + chr7_4:49372382-49372401 None:intergenic 10.0%
!!! TTAATATTTTGAGTTTAAAT+AGG - chr7_4:49372401-49372420 Msa1159720:intron 10.0%
!!! TTTTATATATTTGTTTTGTA+AGG - chr7_4:49372940-49372959 Msa1159720:intron 10.0%
!! GATATTAAGAATAAATTTAA+TGG - chr7_4:49373973-49373992 Msa1159720:intron 10.0%
!! ACAACTTTAATATTTACAAT+AGG + chr7_4:49371582-49371601 None:intergenic 15.0%
!! TATTTGATAGAATTGTAAAA+AGG + chr7_4:49372045-49372064 None:intergenic 15.0%
!!! AAATTATGTTTTATAGTATC+TGG - chr7_4:49372619-49372638 Msa1159720:intron 15.0%
!!! TACTTTTTCGTATTTTTATA+CGG - chr7_4:49373446-49373465 Msa1159720:intron 15.0%
!! TAAATCATAAATATAGGAAA+AGG + chr7_4:49374136-49374155 None:intergenic 15.0%
!! AGAAGATAAATCATAAATAT+AGG + chr7_4:49374142-49374161 None:intergenic 15.0%
!!! AAAACTTTAAATTTTTTGAG+TGG - chr7_4:49374533-49374552 Msa1159720:intron 15.0%
!!! TTTAAAGATCTAAAATCCTT+CGG - chr7_4:49369800-49369819 Msa1159720:three_prime_UTR 20.0%
!!! ATAGATTTTTTGTTTTAGAC+CGG - chr7_4:49370037-49370056 Msa1159720:three_prime_UTR 20.0%
!! AGATGAATTAATGATTGAAA+TGG - chr7_4:49370702-49370721 Msa1159720:three_prime_UTR 20.0%
!! GATGAATTAATGATTGAAAT+GGG - chr7_4:49370703-49370722 Msa1159720:three_prime_UTR 20.0%
!! ATGAATTAATGATTGAAATG+GGG - chr7_4:49370704-49370723 Msa1159720:three_prime_UTR 20.0%
!! TGGTATTGTAAAATTAGTAA+AGG - chr7_4:49371234-49371253 Msa1159720:three_prime_UTR 20.0%
!! TTATTAATAAGTGCAAACAA+GGG + chr7_4:49372299-49372318 None:intergenic 20.0%
!! ATTATTAATAAGTGCAAACA+AGG + chr7_4:49372300-49372319 None:intergenic 20.0%
!!! TATTTTGAGTTTAAATAGGT+AGG - chr7_4:49372405-49372424 Msa1159720:intron 20.0%
!!! ATTCATTTTTACAAGAATTC+AGG - chr7_4:49372435-49372454 Msa1159720:intron 20.0%
!!! TTCAATTTTAACATATAGTG+TGG + chr7_4:49372595-49372614 None:intergenic 20.0%
!! TCATAGTCACAATATTAATA+TGG + chr7_4:49373228-49373247 None:intergenic 20.0%
!! TTAATATTGTGACTATGAAA+TGG - chr7_4:49373230-49373249 Msa1159720:three_prime_UTR 20.0%
!! AATAAGTGTAAAGAAATGAA+AGG + chr7_4:49373374-49373393 None:intergenic 20.0%
!! ATCATTTAAATACAAGCATT+GGG + chr7_4:49373902-49373921 None:intergenic 20.0%
!! TATCATTTAAATACAAGCAT+TGG + chr7_4:49373903-49373922 None:intergenic 20.0%
!! TAAATATAGGAAAAGGAATA+TGG + chr7_4:49374129-49374148 None:intergenic 20.0%
!!! TATGATATTCTTTTTCCAAA+AGG - chr7_4:49374304-49374323 Msa1159720:three_prime_UTR 20.0%
!! GACTTTATTAATTGTTTGAA+TGG - chr7_4:49374606-49374625 Msa1159720:intron 20.0%
!!! ATTCTTCTTTTTTATCCTAT+TGG + chr7_4:49374661-49374680 None:intergenic 20.0%
! ACATCAAAAAATCAGATAGT+GGG + chr7_4:49369755-49369774 None:intergenic 25.0%
! AACATCAAAAAATCAGATAG+TGG + chr7_4:49369756-49369775 None:intergenic 25.0%
! ATTTCTCCTATAATTAAGTG+CGG + chr7_4:49369896-49369915 None:intergenic 25.0%
!!! TAAATTGATTTTCATAGCTG+AGG - chr7_4:49370141-49370160 Msa1159720:three_prime_UTR 25.0%
!! TTAAACCTTAGGATTTTAGA+GGG + chr7_4:49370582-49370601 None:intergenic 25.0%
! TAACTGATAACTTAAACCTT+AGG + chr7_4:49370593-49370612 None:intergenic 25.0%
!!! AGTTATCAGTTATTTTCTCT+TGG - chr7_4:49370601-49370620 Msa1159720:intron 25.0%
!!! TTCCTATTTTTGTTCTCAAT+TGG - chr7_4:49370646-49370665 Msa1159720:intron 25.0%
! TTCCAATTGAGAACAAAAAT+AGG + chr7_4:49370651-49370670 None:intergenic 25.0%
! TGAATTAATGATTGAAATGG+GGG - chr7_4:49370705-49370724 Msa1159720:three_prime_UTR 25.0%
! ACAAAGTTTAAATCTGATGA+CGG + chr7_4:49370748-49370767 None:intergenic 25.0%
!! TTTTATTCTTCCAGTCTAAT+TGG - chr7_4:49370863-49370882 Msa1159720:intron 25.0%
! AGTAGTATGAATAAAACAGA+AGG + chr7_4:49370906-49370925 None:intergenic 25.0%
!! TGATTTTATGTGATACATTG+GGG + chr7_4:49370975-49370994 None:intergenic 25.0%
!! GTGATTTTATGTGATACATT+GGG + chr7_4:49370976-49370995 None:intergenic 25.0%
!! AGTGATTTTATGTGATACAT+TGG + chr7_4:49370977-49370996 None:intergenic 25.0%
! TATGCATGTAAAAATCATGT+AGG - chr7_4:49371015-49371034 Msa1159720:intron 25.0%
! GATTTATCTTGAACTAAAGA+TGG - chr7_4:49371160-49371179 Msa1159720:three_prime_UTR 25.0%
!!! TCACTGGTTGTATTATTTTA+TGG - chr7_4:49371214-49371233 Msa1159720:three_prime_UTR 25.0%
!! TCTCTAAAAATAACCATTGT+TGG - chr7_4:49371368-49371387 Msa1159720:three_prime_UTR 25.0%
!!! AGTTCATATGTTTTGTTTCT+TGG - chr7_4:49371484-49371503 Msa1159720:three_prime_UTR 25.0%
! ACAATTAAAATCTCAGAGAT+TGG + chr7_4:49371650-49371669 None:intergenic 25.0%
! AACCAATAGTTACTTATGAA+TGG - chr7_4:49371744-49371763 Msa1159720:three_prime_UTR 25.0%
! AACCATTCATAAGTAACTAT+TGG + chr7_4:49371749-49371768 None:intergenic 25.0%
! CATAAAATTTACAACCTGTT+TGG + chr7_4:49371862-49371881 None:intergenic 25.0%
! GAAAAGCTTATTCTACAAAA+TGG - chr7_4:49371963-49371982 Msa1159720:intron 25.0%
! GAAAAAAACTGCATAAATCA+AGG + chr7_4:49372130-49372149 None:intergenic 25.0%
!! TCTTTCACAATTTTGCTTTA+AGG - chr7_4:49372164-49372183 Msa1159720:intron 25.0%
! CTAAAAGGTAATAGACTAAT+AGG + chr7_4:49372344-49372363 None:intergenic 25.0%
!!! AAATTTGTTAATATAAGCGG+AGG + chr7_4:49372379-49372398 None:intergenic 25.0%
!!! CAGTATTCAACAATTTGTTA+TGG - chr7_4:49372487-49372506 Msa1159720:intron 25.0%
! TTCTTATCTGTTAGAATGAA+TGG - chr7_4:49372513-49372532 Msa1159720:intron 25.0%
! TTACACTGGTAATAATAACT+AGG - chr7_4:49372695-49372714 Msa1159720:intron 25.0%
! GATACATTTAGTCAAGAATT+CGG - chr7_4:49372717-49372736 Msa1159720:intron 25.0%
! ATACATTTAGTCAAGAATTC+GGG - chr7_4:49372718-49372737 Msa1159720:intron 25.0%
!!! AATCTTTTTTCTACATTAGC+TGG - chr7_4:49372871-49372890 Msa1159720:intron 25.0%
! AATTCAAAGATCTGTTATTG+AGG - chr7_4:49373121-49373140 Msa1159720:intron 25.0%
! AAACATGCTGTAAAATATGA+AGG + chr7_4:49373344-49373363 None:intergenic 25.0%
! GTAAAGAAATGAAAGGATAA+CGG + chr7_4:49373367-49373386 None:intergenic 25.0%
! AACTAGTATATTTGAATCTG+CGG + chr7_4:49373608-49373627 None:intergenic 25.0%
!! TGTTCCATTATTTGTTAAAG+AGG - chr7_4:49373696-49373715 Msa1159720:intron 25.0%
! ATTAAAGTTCAATTCATTGC+TGG + chr7_4:49373749-49373768 None:intergenic 25.0%
! GCAATGAATTGAACTTTAAT+CGG - chr7_4:49373749-49373768 Msa1159720:intron 25.0%
! CAATGAATTGAACTTTAATC+GGG - chr7_4:49373750-49373769 Msa1159720:intron 25.0%
! GCTTTCCTATGAATTTAATT+TGG - chr7_4:49374099-49374118 Msa1159720:intron 25.0%
! GTTTGCCAAATTAAATTCAT+AGG + chr7_4:49374107-49374126 None:intergenic 25.0%
!!! CTACTTTTTGGTTATCTATT+AGG - chr7_4:49374367-49374386 Msa1159720:intron 25.0%
! ATTAATTGTTTGAATGGTTC+AGG - chr7_4:49374612-49374631 Msa1159720:intron 25.0%
! AAAGAAGAATCTAGAAATGA+AGG - chr7_4:49374671-49374690 Msa1159720:intron 25.0%
!!! TCAATCTTCAACTCATTTTT+AGG + chr7_4:49374888-49374907 None:intergenic 25.0%
!! TAAAAATGAGTTGAAGATTG+AGG - chr7_4:49374887-49374906 Msa1159720:intron 25.0%
!! AGAAACAAATTTTGCAACAT+CGG + chr7_4:49375135-49375154 None:intergenic 25.0%
!!! TTTGTAGTTGATAAATCACA+AGG - chr7_4:49375451-49375470 Msa1159720:CDS 25.0%
!!! TTGTAGTTGATAAATCACAA+GGG - chr7_4:49375452-49375471 Msa1159720:CDS 25.0%
AAGATGTCGAAGTTATTTGA+AGG - chr7_4:49369523-49369542 Msa1159720:three_prime_UTR 30.0%
AGATGTCGAAGTTATTTGAA+GGG - chr7_4:49369524-49369543 Msa1159720:three_prime_UTR 30.0%
! AGAAATTACGTACGTTTTGA+CGG + chr7_4:49369693-49369712 None:intergenic 30.0%
TCAAAACGTACGTAATTTCT+TGG - chr7_4:49369693-49369712 Msa1159720:intron 30.0%
!! ATCATGTGTTAGTGTTGTTT+AGG - chr7_4:49369931-49369950 Msa1159720:three_prime_UTR 30.0%
TGATAAAAGAACCAAAACTG+AGG + chr7_4:49370178-49370197 None:intergenic 30.0%
! TGGTTCTTTTATCATTGAGT+AGG - chr7_4:49370184-49370203 Msa1159720:three_prime_UTR 30.0%
!! AAAAACCCTCTAAAATCCTA+AGG - chr7_4:49370574-49370593 Msa1159720:intron 30.0%
! CTTAAACCTTAGGATTTTAG+AGG + chr7_4:49370583-49370602 None:intergenic 30.0%
!!! ATTCATCTATTTTAACCTGC+AGG + chr7_4:49370690-49370709 None:intergenic 30.0%
GAATTAATGATTGAAATGGG+GGG - chr7_4:49370706-49370725 Msa1159720:three_prime_UTR 30.0%
TTGTCATCGTGAAAAATGTT+TGG - chr7_4:49370764-49370783 Msa1159720:three_prime_UTR 30.0%
TGTCATCGTGAAAAATGTTT+GGG - chr7_4:49370765-49370784 Msa1159720:three_prime_UTR 30.0%
GTATGAATAAAACAGAAGGA+AGG + chr7_4:49370902-49370921 None:intergenic 30.0%
! GATTTTATGTGATACATTGG+GGG + chr7_4:49370974-49370993 None:intergenic 30.0%
TGTATCACATAAAATCACTC+AGG - chr7_4:49370978-49370997 Msa1159720:intron 30.0%
GTATCACATAAAATCACTCA+GGG - chr7_4:49370979-49370998 Msa1159720:intron 30.0%
! GCGTTAATTAACTCTACTTT+TGG - chr7_4:49371067-49371086 Msa1159720:three_prime_UTR 30.0%
! GGTGGTAGTATAAATCTTTT+AGG - chr7_4:49371101-49371120 Msa1159720:three_prime_UTR 30.0%
! CTACAACAAACGTTTTTCAT+TGG - chr7_4:49371391-49371410 Msa1159720:three_prime_UTR 30.0%
!!! TTGGCCTTCACTTTTTTTTT+TGG - chr7_4:49371410-49371429 Msa1159720:three_prime_UTR 30.0%
CAAGCCAAAAAAAAAAGTGA+AGG + chr7_4:49371417-49371436 None:intergenic 30.0%
!!! CTTCACTTTTTTTTTTGGCT+TGG - chr7_4:49371415-49371434 Msa1159720:three_prime_UTR 30.0%
!! TGGTCTATCTCATTTAGTTT+TGG - chr7_4:49371504-49371523 Msa1159720:three_prime_UTR 30.0%
!!! GGTCTATCTCATTTAGTTTT+GGG - chr7_4:49371505-49371524 Msa1159720:three_prime_UTR 30.0%
!!! ATCTCATTTAGTTTTGGGTT+TGG - chr7_4:49371510-49371529 Msa1159720:three_prime_UTR 30.0%
TAAGTAATCATCTAGATGCA+GGG + chr7_4:49371547-49371566 None:intergenic 30.0%
!! AAGTAACTATTGGTTTCTTC+AGG + chr7_4:49371739-49371758 None:intergenic 30.0%
AAGCTTATTCTACAAAATGG+TGG - chr7_4:49371966-49371985 Msa1159720:intron 30.0%
ATTATCATTTGTGCCAGATA+AGG + chr7_4:49372250-49372269 None:intergenic 30.0%
TAGGTCAACAATATTTAGTC+AGG + chr7_4:49372325-49372344 None:intergenic 30.0%
ATGTATCAATACATCAAAGC+AGG + chr7_4:49372465-49372484 None:intergenic 30.0%
! TGCTTTGATGTATTGATACA+TGG - chr7_4:49372464-49372483 Msa1159720:intron 30.0%
! CACTGATTGTAAGTACATAA+GGG + chr7_4:49373031-49373050 None:intergenic 30.0%
! TCACTGATTGTAAGTACATA+AGG + chr7_4:49373032-49373051 None:intergenic 30.0%
ACTTAATTATTCAGTCAGAG+AGG + chr7_4:49373096-49373115 None:intergenic 30.0%
TGAAGGTGATAAGTATAAGA+CGG - chr7_4:49373189-49373208 Msa1159720:three_prime_UTR 30.0%
! TGTTTAGTTCAAAACCCAAA+AGG + chr7_4:49373316-49373335 None:intergenic 30.0%
AAGCTTATCTTATGGTAACA+GGG + chr7_4:49373408-49373427 None:intergenic 30.0%
AGGATCTACATTTAAAGACT+TGG + chr7_4:49373638-49373657 None:intergenic 30.0%
TCTGCCTCTTTAACAAATAA+TGG + chr7_4:49373703-49373722 None:intergenic 30.0%
AATGGAGAAGCTAAGTAATA+TGG - chr7_4:49373858-49373877 Msa1159720:intron 30.0%
GTATCAATGTATACGATTTC+TGG - chr7_4:49374056-49374075 Msa1159720:intron 30.0%
!! ATTTGTGTTTTTACAGGGAA+AGG - chr7_4:49374167-49374186 Msa1159720:intron 30.0%
!! TTTGTGTTTTTACAGGGAAA+GGG - chr7_4:49374168-49374187 Msa1159720:intron 30.0%
! AAACATGATAACACACCTTT+TGG + chr7_4:49374322-49374341 None:intergenic 30.0%
AATTAATAAAGTCGACGAAG+TGG + chr7_4:49374599-49374618 None:intergenic 30.0%
!! TCAACTCATTTTTAGGCTTT+TGG + chr7_4:49374881-49374900 None:intergenic 30.0%
! TCAATGTTTTCCTTTCTAAC+CGG + chr7_4:49375062-49375081 None:intergenic 30.0%
! GAAACAAATTTTGCAACATC+GGG + chr7_4:49375134-49375153 None:intergenic 30.0%
TAATAATCAACCTGAAGAAC+AGG - chr7_4:49375217-49375236 Msa1159720:intron 30.0%
!! AAAATCAGATAGTGGGATAG+TGG + chr7_4:49369748-49369767 None:intergenic 35.0%
CTAACACCGCACTTAATTAT+AGG - chr7_4:49369887-49369906 Msa1159720:three_prime_UTR 35.0%
!! TGTTAGTGTTGTTTAGGTGT+CGG - chr7_4:49369937-49369956 Msa1159720:three_prime_UTR 35.0%
! AGCGTTTAGGTTTAAGCATT+TGG - chr7_4:49370068-49370087 Msa1159720:three_prime_UTR 35.0%
!! TAGTTGTTGTTCCTCAGTTT+TGG - chr7_4:49370164-49370183 Msa1159720:three_prime_UTR 35.0%
GTTCTTCAATGTGCTAAAGA+AGG - chr7_4:49370217-49370236 Msa1159720:three_prime_UTR 35.0%
TTCAATGTGCTAAAGAAGGA+AGG - chr7_4:49370221-49370240 Msa1159720:three_prime_UTR 35.0%
!!! AGTTGCTTTTTGAAGGGTTT+TGG - chr7_4:49370386-49370405 Msa1159720:intron 35.0%
!! GGATTTTAGAGGGTTTTTGA+GGG + chr7_4:49370572-49370591 None:intergenic 35.0%
!! AGGATTTTAGAGGGTTTTTG+AGG + chr7_4:49370573-49370592 None:intergenic 35.0%
GAGAACAAAAATAGGAAGAG+AGG + chr7_4:49370643-49370662 None:intergenic 35.0%
TATTATTGTATGTGACCTGC+AGG - chr7_4:49370672-49370691 Msa1159720:intron 35.0%
GAAGAAAAGACCAATTAGAC+TGG + chr7_4:49370876-49370895 None:intergenic 35.0%
TGTAAAAATCATGTAGGCCA+AGG - chr7_4:49371021-49371040 Msa1159720:intron 35.0%
GTAAAAATCATGTAGGCCAA+GGG - chr7_4:49371022-49371041 Msa1159720:intron 35.0%
AGGAAGATTCTGGTCATATT+TGG - chr7_4:49371045-49371064 Msa1159720:intron 35.0%
!! CTACTTTTGGCAAGTAGTTT+AGG - chr7_4:49371080-49371099 Msa1159720:three_prime_UTR 35.0%
TGAAGCTTATGTTAGTTCAC+TGG - chr7_4:49371198-49371217 Msa1159720:three_prime_UTR 35.0%
!! CTTGGTTTTTGTCCCAAATT+GGG - chr7_4:49371433-49371452 Msa1159720:three_prime_UTR 35.0%
GTAAGTAATCATCTAGATGC+AGG + chr7_4:49371548-49371567 None:intergenic 35.0%
AGATTGGATAAGTGTGGAAT+TGG + chr7_4:49371634-49371653 None:intergenic 35.0%
TGTTCCTCAAGAGTCATATA+TGG - chr7_4:49371796-49371815 Msa1159720:three_prime_UTR 35.0%
AGAACCATATATGACTCTTG+AGG + chr7_4:49371803-49371822 None:intergenic 35.0%
TATATGGTTCTTCCTTTCTC+TGG - chr7_4:49371812-49371831 Msa1159720:three_prime_UTR 35.0%
ATATGGTTCTTCCTTTCTCT+GGG - chr7_4:49371813-49371832 Msa1159720:three_prime_UTR 35.0%
TTCAAATGTTCCTTGAGAAG+AGG - chr7_4:49372092-49372111 Msa1159720:intron 35.0%
GAAAAGGTTAATGCAGACAT+GGG + chr7_4:49372228-49372247 None:intergenic 35.0%
! GCATTAACCTTTTCCTTATC+TGG - chr7_4:49372234-49372253 Msa1159720:intron 35.0%
ATTTGTGCCAGATAAGGAAA+AGG + chr7_4:49372244-49372263 None:intergenic 35.0%
AGGTATGGATGTTCTCTAAA+AGG + chr7_4:49372359-49372378 None:intergenic 35.0%
TGTTAATATAAGCGGAGGTA+TGG + chr7_4:49372374-49372393 None:intergenic 35.0%
TAAAAACCTGTCTGCACAAA+AGG + chr7_4:49372925-49372944 None:intergenic 35.0%
ATAAGGGATACTAATGCCTA+AGG + chr7_4:49373015-49373034 None:intergenic 35.0%
GTCTTATACTTATCACCTTC+AGG + chr7_4:49373190-49373209 None:intergenic 35.0%
AGTATAAGACGGCAAAACTT+TGG - chr7_4:49373200-49373219 Msa1159720:three_prime_UTR 35.0%
GTATAAGACGGCAAAACTTT+GGG - chr7_4:49373201-49373220 Msa1159720:three_prime_UTR 35.0%
TATAAGACGGCAAAACTTTG+GGG - chr7_4:49373202-49373221 Msa1159720:three_prime_UTR 35.0%
GATGAATCTATTGCTCAAAG+AGG - chr7_4:49373256-49373275 Msa1159720:three_prime_UTR 35.0%
TGCTTTAATGCAGTATGTTG+TGG - chr7_4:49373288-49373307 Msa1159720:intron 35.0%
! AGTATGTTGTGGTACCTTTT+GGG - chr7_4:49373299-49373318 Msa1159720:intron 35.0%
CAAGCTTATCTTATGGTAAC+AGG + chr7_4:49373409-49373428 None:intergenic 35.0%
CTGTTACCATAAGATAAGCT+TGG - chr7_4:49373407-49373426 Msa1159720:intron 35.0%
ATAAAGATCCACTCTCAACA+GGG + chr7_4:49373498-49373517 None:intergenic 35.0%
ATAGCCAGGAAAAGGATATT+GGG - chr7_4:49373554-49373573 Msa1159720:intron 35.0%
! TTATCCCAATATCCTTTTCC+TGG + chr7_4:49373561-49373580 None:intergenic 35.0%
GATATTGGGATAATGCAATC+TGG - chr7_4:49373568-49373587 Msa1159720:intron 35.0%
!!! CATATGTTTTGACTGTGTAG+CGG + chr7_4:49373662-49373681 None:intergenic 35.0%
! AATTCATTGCTGGTCTGTAA+TGG + chr7_4:49373739-49373758 None:intergenic 35.0%
TTCTGCAATCTGCTAAATAC+CGG + chr7_4:49373810-49373829 None:intergenic 35.0%
GATTGCAGAATATCACTTGT+TGG - chr7_4:49373820-49373839 Msa1159720:intron 35.0%
!!! TGGTTTTGAAGCTTCTGAAA+TGG - chr7_4:49373840-49373859 Msa1159720:intron 35.0%
CTAAGTAATATGGTGCGTAA+AGG - chr7_4:49373868-49373887 Msa1159720:intron 35.0%
GAATAGACTCACATTTCTGT+TGG + chr7_4:49373952-49373971 None:intergenic 35.0%
! GGATGTTAGTTTCAGAAATG+TGG - chr7_4:49374077-49374096 Msa1159720:intron 35.0%
!! TCCTGCATTTGTGTTTTTAC+AGG - chr7_4:49374161-49374180 Msa1159720:intron 35.0%
!! CCTGCATTTGTGTTTTTACA+GGG - chr7_4:49374162-49374181 Msa1159720:intron 35.0%
ATTACGCTGTTAAAACCTCT+TGG - chr7_4:49374224-49374243 Msa1159720:three_prime_UTR 35.0%
AACAAGTCCATGTTCTACAA+CGG - chr7_4:49374272-49374291 Msa1159720:three_prime_UTR 35.0%
!! TGTGTTCTGTGTCTACTTTT+TGG - chr7_4:49374355-49374374 Msa1159720:intron 35.0%
GGAATTAAAGAGACGACAAA+AGG - chr7_4:49374788-49374807 Msa1159720:CDS 35.0%
! TGAGGCTTATAAGCTTTATG+AGG - chr7_4:49374905-49374924 Msa1159720:intron 35.0%
ATCTCTAAGCATCATGAGAT+GGG - chr7_4:49374957-49374976 Msa1159720:intron 35.0%
GATGGGATTTAAGAAAGCAA+TGG - chr7_4:49374974-49374993 Msa1159720:intron 35.0%
TGTTACGTACTTGAATGATC+CGG - chr7_4:49375040-49375059 Msa1159720:intron 35.0%
AAACATTGAGAACCACTTCA+AGG - chr7_4:49375073-49375092 Msa1159720:intron 35.0%
AACATTGAGAACCACTTCAA+GGG - chr7_4:49375074-49375093 Msa1159720:intron 35.0%
!!! TCTATCTCTCGTGGTTTTGT+GGG + chr7_4:49369489-49369508 None:intergenic 40.0%
CAAATTTGTCAGGCGGAAAT+AGG + chr7_4:49369573-49369592 None:intergenic 40.0%
AGAACCGCATCAAATTTGTC+AGG + chr7_4:49369583-49369602 None:intergenic 40.0%
!! GGTTTTAATCTTTCCCGCAA+TGG - chr7_4:49369640-49369659 Msa1159720:intron 40.0%
! ATAATCGTTTTCGCCATTGC+GGG + chr7_4:49369656-49369675 None:intergenic 40.0%
! GATAATCGTTTTCGCCATTG+CGG + chr7_4:49369657-49369676 None:intergenic 40.0%
! AAAGTGCAGCAAAAGTGTGT+GGG + chr7_4:49369984-49370003 None:intergenic 40.0%
ACCTAAACGCTCTAATTGTC+CGG + chr7_4:49370059-49370078 None:intergenic 40.0%
ACTGCACGTGTATATATGTG+TGG + chr7_4:49370121-49370140 None:intergenic 40.0%
CATAGTTAAGCAGCAAGTGA+AGG + chr7_4:49370263-49370282 None:intergenic 40.0%
! CTTCACTTGCTGCTTAACTA+TGG - chr7_4:49370261-49370280 Msa1159720:three_prime_UTR 40.0%
TGCATGTTCCAATACTCTCA+CGG - chr7_4:49370354-49370373 Msa1159720:three_prime_UTR 40.0%
!!! GTCGCAAGTTGCTTTTTGAA+GGG - chr7_4:49370380-49370399 Msa1159720:intron 40.0%
!! TGCTTTTTGAAGGGTTTTGG+AGG - chr7_4:49370389-49370408 Msa1159720:intron 40.0%
!!! GCTTTTTGAAGGGTTTTGGA+GGG - chr7_4:49370390-49370409 Msa1159720:intron 40.0%
!!! AGGGCTAAGTTGGTTTTGAA+GGG - chr7_4:49370409-49370428 Msa1159720:intron 40.0%
AAATAGGAAGAGAGGAGTGA+AGG + chr7_4:49370635-49370654 None:intergenic 40.0%
ATGTACCAGACCTTATACTC+TGG + chr7_4:49370793-49370812 None:intergenic 40.0%
TATGTGATACATTGGGGGAT+AGG + chr7_4:49370969-49370988 None:intergenic 40.0%
! CTTTTGGCAAGTAGTTTAGG+TGG - chr7_4:49371083-49371102 Msa1159720:three_prime_UTR 40.0%
!! ACGTTTGTTGTAGCCAACAA+TGG + chr7_4:49371384-49371403 None:intergenic 40.0%
!! GCTTGGTTTTTGTCCCAAAT+TGG - chr7_4:49371432-49371451 Msa1159720:three_prime_UTR 40.0%
TTGTCCCAAATTGGGATTTG+TGG - chr7_4:49371441-49371460 Msa1159720:three_prime_UTR 40.0%
TGGTGGCTAATATGACTCTA+TGG - chr7_4:49371461-49371480 Msa1159720:three_prime_UTR 40.0%
TCTCAGAGATTGGATAAGTG+TGG + chr7_4:49371640-49371659 None:intergenic 40.0%
CAGATCTTTAACCCAGAGAA+AGG + chr7_4:49371827-49371846 None:intergenic 40.0%
TTCAGATAAGCGCAAAGAGA+TGG - chr7_4:49371941-49371960 Msa1159720:intron 40.0%
! GATTTTCTCTCCTCTTCTCA+AGG + chr7_4:49372105-49372124 None:intergenic 40.0%
GGAAAAGGTTAATGCAGACA+TGG + chr7_4:49372229-49372248 None:intergenic 40.0%
!! GTATTTCTAGCAGTCTGCAA+CGG - chr7_4:49372549-49372568 Msa1159720:intron 40.0%
! TTTGACGCATTGATACTTGG+TGG - chr7_4:49372750-49372769 Msa1159720:intron 40.0%
TCAGAAACTTCACTTCAGAC+TGG + chr7_4:49372844-49372863 None:intergenic 40.0%
! GTCTGAAGTGAAGTTTCTGA+TGG - chr7_4:49372844-49372863 Msa1159720:intron 40.0%
! TTAACACCTTTTGTGCAGAC+AGG - chr7_4:49372916-49372935 Msa1159720:intron 40.0%
CTGTTATTGAGGTTTGAACG+TGG - chr7_4:49373132-49373151 Msa1159720:intron 40.0%
! CAGTATGTTGTGGTACCTTT+TGG - chr7_4:49373298-49373317 Msa1159720:intron 40.0%
AGTCAGCCAAGCTTATCTTA+TGG + chr7_4:49373416-49373435 None:intergenic 40.0%
ATAAGATAAGCTTGGCTGAC+TGG - chr7_4:49373415-49373434 Msa1159720:intron 40.0%
ACGGATAGCATGTCTGAATA+AGG - chr7_4:49373465-49373484 Msa1159720:intron 40.0%
GATAAAGATCCACTCTCAAC+AGG + chr7_4:49373499-49373518 None:intergenic 40.0%
TATCTTCACGTAACGTGACT+AGG - chr7_4:49373515-49373534 Msa1159720:intron 40.0%
CATAGCCAGGAAAAGGATAT+TGG - chr7_4:49373553-49373572 Msa1159720:intron 40.0%
ATTGAACTTTAATCGGGCTG+TGG - chr7_4:49373756-49373775 Msa1159720:intron 40.0%
GTCATCAGACTCAGAATCAT+TGG + chr7_4:49373782-49373801 None:intergenic 40.0%
AGTAATATGGTGCGTAAAGG+TGG - chr7_4:49373871-49373890 Msa1159720:intron 40.0%
AAGTTGACGCACATAGTAGT+CGG - chr7_4:49373922-49373941 Msa1159720:intron 40.0%
CCCTGTAAAAACACAAATGC+AGG + chr7_4:49374165-49374184 None:intergenic 40.0%
! TGTTAAAACCTCTTGGCTTG+AGG - chr7_4:49374231-49374250 Msa1159720:three_prime_UTR 40.0%
CATTGTACCGTTGTAGAACA+TGG + chr7_4:49374282-49374301 None:intergenic 40.0%
ACGAAGTGGCAGAAATCATA+AGG + chr7_4:49374585-49374604 None:intergenic 40.0%
TGGTTCAGGTCAGAAAAAGT+TGG - chr7_4:49374626-49374645 Msa1159720:intron 40.0%
TTCAGGTCAGAAAAAGTTGG+TGG - chr7_4:49374629-49374648 Msa1159720:intron 40.0%
! TTGATTATGCTGCTTCTCGT+AGG - chr7_4:49374733-49374752 Msa1159720:exon 40.0%
AAAGAGACGACAAAAGGAGA+TGG - chr7_4:49374794-49374813 Msa1159720:intron 40.0%
TAAGAATCGACGATGACTTG+AGG - chr7_4:49374829-49374848 Msa1159720:intron 40.0%
AAGAATCGACGATGACTTGA+GGG - chr7_4:49374830-49374849 Msa1159720:intron 40.0%
GCAAAGTTAGGTCCTCTTTA+TGG - chr7_4:49374852-49374871 Msa1159720:intron 40.0%
! GGCTTTTGGTATCCATAAAG+AGG + chr7_4:49374867-49374886 None:intergenic 40.0%
! GGCTTATAAGCTTTATGAGG+AGG - chr7_4:49374908-49374927 Msa1159720:intron 40.0%
TGAGGAGGATTGTAAGTCTA+AGG - chr7_4:49374923-49374942 Msa1159720:intron 40.0%
GAGGAGGATTGTAAGTCTAA+GGG - chr7_4:49374924-49374943 Msa1159720:intron 40.0%
CATCTCATGATGCTTAGAGA+TGG + chr7_4:49374958-49374977 None:intergenic 40.0%
CATCTCTAAGCATCATGAGA+TGG - chr7_4:49374956-49374975 Msa1159720:intron 40.0%
GGGATTTAAGAAAGCAATGG+AGG - chr7_4:49374977-49374996 Msa1159720:intron 40.0%
!! AAGAAAGCAATGGAGGCATT+TGG - chr7_4:49374984-49375003 Msa1159720:intron 40.0%
CTTGAATGATCCGGTTAGAA+AGG - chr7_4:49375049-49375068 Msa1159720:intron 40.0%
ACATTGAGAACCACTTCAAG+GGG - chr7_4:49375075-49375094 Msa1159720:intron 40.0%
TCAAAATCATCCCCTTGAAG+TGG + chr7_4:49375088-49375107 None:intergenic 40.0%
! ACTTCAAGGGGATGATTTTG+AGG - chr7_4:49375087-49375106 Msa1159720:intron 40.0%
!!! GGGATGATTTTGAGGTTTTC+TGG - chr7_4:49375095-49375114 Msa1159720:intron 40.0%
ATGAGCCTCCATATTCAAAG+AGG - chr7_4:49375183-49375202 Msa1159720:intron 40.0%
TGAGCCTCCATATTCAAAGA+GGG - chr7_4:49375184-49375203 Msa1159720:intron 40.0%
TAATCAACCTGAAGAACAGG+AGG - chr7_4:49375220-49375239 Msa1159720:intron 40.0%
!! CTCTATCTCTCGTGGTTTTG+TGG + chr7_4:49369490-49369509 None:intergenic 45.0%
CTTCTTCTCTCTATCTCTCG+TGG + chr7_4:49369498-49369517 None:intergenic 45.0%
TCCGCCTGACAAATTTGATG+CGG - chr7_4:49369576-49369595 Msa1159720:three_prime_UTR 45.0%
ACCGCATCAAATTTGTCAGG+CGG + chr7_4:49369580-49369599 None:intergenic 45.0%
CTCAAAGCCGTTGAAGAGAA+CGG - chr7_4:49369601-49369620 Msa1159720:intron 45.0%
TCCTTCGGCTGTAAGATGAT+TGG - chr7_4:49369815-49369834 Msa1159720:three_prime_UTR 45.0%
ACCAATCATCTTACAGCCGA+AGG + chr7_4:49369819-49369838 None:intergenic 45.0%
GTGGGATCTTTAGACGTGTA+TGG + chr7_4:49369966-49369985 None:intergenic 45.0%
! GAAAGTGCAGCAAAAGTGTG+TGG + chr7_4:49369985-49370004 None:intergenic 45.0%
ACTTTCGCCACGTGATATGA+CGG - chr7_4:49369999-49370018 Msa1159720:three_prime_UTR 45.0%
ACTTCTTCCGTCATATCACG+TGG + chr7_4:49370009-49370028 None:intergenic 45.0%
! ACCGGACAATTAGAGCGTTT+AGG - chr7_4:49370055-49370074 Msa1159720:three_prime_UTR 45.0%
! CAGCAAGTGAAGGCTTGTTT+GGG + chr7_4:49370253-49370272 None:intergenic 45.0%
! CACTTGCTGCTTAACTATGG+AGG - chr7_4:49370264-49370283 Msa1159720:three_prime_UTR 45.0%
GCTGTCAAAATACTTGCCTC+TGG - chr7_4:49370286-49370305 Msa1159720:three_prime_UTR 45.0%
!! TGGCTTTGATGCGGATCAAA+AGG - chr7_4:49370306-49370325 Msa1159720:three_prime_UTR 45.0%
!!! CGTCGCAAGTTGCTTTTTGA+AGG - chr7_4:49370379-49370398 Msa1159720:intron 45.0%
!!! GAGGGCTAAGTTGGTTTTGA+AGG - chr7_4:49370408-49370427 Msa1159720:intron 45.0%
TGTTTGGGCTCCAGAGTATA+AGG - chr7_4:49370780-49370799 Msa1159720:three_prime_UTR 45.0%
AAAATCATGTAGGCCAAGGG+AGG - chr7_4:49371025-49371044 Msa1159720:intron 45.0%
TCCCAAATTGGGATTTGTGG+TGG - chr7_4:49371444-49371463 Msa1159720:three_prime_UTR 45.0%
GCCACCACAAATCCCAATTT+GGG + chr7_4:49371448-49371467 None:intergenic 45.0%
AGCCACCACAAATCCCAATT+TGG + chr7_4:49371449-49371468 None:intergenic 45.0%
ACCACGTTATGTCTTGCAGT+GGG - chr7_4:49371703-49371722 Msa1159720:intron 45.0%
! TTATGTCTTGCAGTGGGCTT+TGG - chr7_4:49371709-49371728 Msa1159720:intron 45.0%
GGGTTAAAGATCTGTGTGAC+TGG - chr7_4:49371833-49371852 Msa1159720:intron 45.0%
TGTGTGACTGGAATCCAAAC+AGG - chr7_4:49371845-49371864 Msa1159720:intron 45.0%
TGTGAAAGACACTGAAGCTG+CGG + chr7_4:49372153-49372172 None:intergenic 45.0%
AGTGAACGTCGAGTTTACAC+TGG - chr7_4:49372681-49372700 Msa1159720:intron 45.0%
! CGCTTTGACGCATTGATACT+TGG - chr7_4:49372747-49372766 Msa1159720:intron 45.0%
GTCTTCTATTGCACTGCCTT+AGG - chr7_4:49372996-49373015 Msa1159720:three_prime_UTR 45.0%
!!! GACTGTTTTTACGCTCCTGA+AGG - chr7_4:49373172-49373191 Msa1159720:three_prime_UTR 45.0%
ATTTGAATCTGCGGCTCTTG+AGG + chr7_4:49373599-49373618 None:intergenic 45.0%
! TCATTGCTGGTCTGTAATGG+AGG + chr7_4:49373736-49373755 None:intergenic 45.0%
CTGAGTCTGATGACAATGAC+CGG - chr7_4:49373788-49373807 Msa1159720:intron 45.0%
AATATGGTGCGTAAAGGTGG+AGG - chr7_4:49373874-49373893 Msa1159720:intron 45.0%
AGTTGACGCACATAGTAGTC+GGG - chr7_4:49373923-49373942 Msa1159720:intron 45.0%
!! GTGTTTTTACAGGGAAAGGG+AGG - chr7_4:49374171-49374190 Msa1159720:intron 45.0%
GTAGTGAGAACTGTTGCTCT+AGG - chr7_4:49374196-49374215 Msa1159720:intron 45.0%
ATCACAATCCTCAAGCCAAG+AGG + chr7_4:49374242-49374261 None:intergenic 45.0%
!! AGGTCAGAAAAAGTTGGTGG+AGG - chr7_4:49374632-49374651 Msa1159720:intron 45.0%
!! TGTTGACTTAGCACAAGTGC+TGG - chr7_4:49374710-49374729 Msa1159720:three_prime_UTR 45.0%
ACGACAAAAGGAGATGGAGA+TGG - chr7_4:49374800-49374819 Msa1159720:intron 45.0%
GATGACTTGAGGGCAAAGTT+AGG - chr7_4:49374840-49374859 Msa1159720:intron 45.0%
CTCCATATTCAAAGAGGGCA+CGG - chr7_4:49375189-49375208 Msa1159720:intron 45.0%
!! CATAAATTAAAAAAAAATTA+AGG + chr7_4:49375422-49375441 None:intergenic 5.0%
AAAGCCGTTGAAGAGAACGG+CGG - chr7_4:49369604-49369623 Msa1159720:intron 50.0%
TTGACCGCCGTTCTCTTCAA+CGG + chr7_4:49369611-49369630 None:intergenic 50.0%
AACGGCGGTCAAGTTCACAT+CGG - chr7_4:49369619-49369638 Msa1159720:intron 50.0%
! GCAGCAAGTGAAGGCTTGTT+TGG + chr7_4:49370254-49370273 None:intergenic 50.0%
!! ACTTGCCTCTGGCTTTGATG+CGG - chr7_4:49370297-49370316 Msa1159720:three_prime_UTR 50.0%
TTGATCCGCATCAAAGCCAG+AGG + chr7_4:49370305-49370324 None:intergenic 50.0%
!!! AGGGTTTTGGAGGGCTAAGT+TGG - chr7_4:49370399-49370418 Msa1159720:intron 50.0%
TGACCAGAATCTTCCTCCCT+TGG + chr7_4:49371041-49371060 None:intergenic 50.0%
CACCACGTTATGTCTTGCAG+TGG - chr7_4:49371702-49371721 Msa1159720:intron 50.0%
GCAATGCTCAGATGAGCATC+AGG - chr7_4:49371772-49371791 Msa1159720:three_prime_UTR 50.0%
GTGAAAGACACTGAAGCTGC+GGG + chr7_4:49372152-49372171 None:intergenic 50.0%
AGATCCACTCTCAACAGGGT+TGG + chr7_4:49373494-49373513 None:intergenic 50.0%
AGCGCAACATAGCCAGGAAA+AGG - chr7_4:49373546-49373565 Msa1159720:intron 50.0%
!!! TGTTTTGACTGTGTAGCGGC+AGG + chr7_4:49373658-49373677 None:intergenic 50.0%
!! AGTTGGTGGAGGCATCCAAT+AGG - chr7_4:49374643-49374662 Msa1159720:intron 50.0%
CGTGCCCTCTTTGAATATGG+AGG + chr7_4:49375191-49375210 None:intergenic 50.0%
CTCCGTGCCCTCTTTGAATA+TGG + chr7_4:49375194-49375213 None:intergenic 50.0%
! TATTCAAAGAGGGCACGGAG+TGG - chr7_4:49375194-49375213 Msa1159720:intron 50.0%
TTGAGCACCTCCTGTTCTTC+AGG + chr7_4:49375230-49375249 None:intergenic 50.0%
! GCGGAAATAGGTGTCGCGAT+AGG + chr7_4:49369561-49369580 None:intergenic 55.0%
! GTGAAGGCTTGTTTGGGCAG+AGG + chr7_4:49370247-49370266 None:intergenic 55.0%
GGGCTCCAGAGTATAAGGTC+TGG - chr7_4:49370785-49370804 Msa1159720:three_prime_UTR 55.0%
AGGCCAAGGGAGGAAGATTC+TGG - chr7_4:49371035-49371054 Msa1159720:intron 55.0%
GCCCACTGCAAGACATAACG+TGG + chr7_4:49371707-49371726 None:intergenic 55.0%
GAGTCCAACCCTGTTGAGAG+TGG - chr7_4:49373487-49373506 Msa1159720:intron 55.0%
CTCAACAGCGCAACATAGCC+AGG - chr7_4:49373540-49373559 Msa1159720:intron 55.0%
! GAGTTTGGAGGGGAGGGTTT+TGG - chr7_4:49374482-49374501 Msa1159720:intron 55.0%
!! TTTGGAGGGGAGGGTTTTGG+AGG - chr7_4:49374485-49374504 Msa1159720:intron 55.0%
!!! TTGGAGGGGAGGGTTTTGGA+GGG - chr7_4:49374486-49374505 Msa1159720:intron 55.0%
GCGCGTTTGCTTCGAGATTG+CGG - chr7_4:49374767-49374786 Msa1159720:CDS 55.0%
! GCGACGCACCGTGAGAGTAT+TGG + chr7_4:49370365-49370384 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 49369482 49375536 49369482 ID=Msa1159720;Name=Msa1159720
chr7_4 mRNA 49369482 49375536 49369482 ID=Msa1159720-mRNA-1;Parent=Msa1159720;Name=Msa1159720-mRNA-1;_AED=0.13;_eAED=0.13;_QI=44|0.88|1|1|0.55|0.6|10|1922|81
chr7_4 exon 49369482 49369619 49369482 ID=Msa1159720-mRNA-1:exon:13570;Parent=Msa1159720-mRNA-1
chr7_4 exon 49369720 49370384 49369720 ID=Msa1159720-mRNA-1:exon:13569;Parent=Msa1159720-mRNA-1
chr7_4 exon 49370693 49370835 49370693 ID=Msa1159720-mRNA-1:exon:13568;Parent=Msa1159720-mRNA-1
chr7_4 exon 49371059 49371545 49371059 ID=Msa1159720-mRNA-1:exon:13567;Parent=Msa1159720-mRNA-1
chr7_4 exon 49371741 49371834 49371741 ID=Msa1159720-mRNA-1:exon:13566;Parent=Msa1159720-mRNA-1
chr7_4 exon 49372981 49373072 49372981 ID=Msa1159720-mRNA-1:exon:13565;Parent=Msa1159720-mRNA-1
chr7_4 exon 49373152 49373296 49373152 ID=Msa1159720-mRNA-1:exon:13564;Parent=Msa1159720-mRNA-1
chr7_4 exon 49374217 49374324 49374217 ID=Msa1159720-mRNA-1:exon:13563;Parent=Msa1159720-mRNA-1
chr7_4 exon 49374691 49374812 49374691 ID=Msa1159720-mRNA-1:exon:13562;Parent=Msa1159720-mRNA-1
chr7_4 exon 49375319 49375536 49375319 ID=Msa1159720-mRNA-1:exon:13561;Parent=Msa1159720-mRNA-1
chr7_4 five_prime_UTR 49375493 49375536 49375493 ID=Msa1159720-mRNA-1:five_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 CDS 49375319 49375492 49375319 ID=Msa1159720-mRNA-1:cds;Parent=Msa1159720-mRNA-1
chr7_4 CDS 49374741 49374812 49374741 ID=Msa1159720-mRNA-1:cds;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49374691 49374740 49374691 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49374217 49374324 49374217 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49373152 49373296 49373152 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49372981 49373072 49372981 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49371741 49371834 49371741 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49371059 49371545 49371059 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49370693 49370835 49370693 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49369720 49370384 49369720 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
chr7_4 three_prime_UTR 49369482 49369619 49369482 ID=Msa1159720-mRNA-1:three_prime_utr;Parent=Msa1159720-mRNA-1
Gene Sequence

>Msa1159720

ATGTCGAAGTTATTTGAAGGGTTTAACGTGTTCCTATCGCGACACCTATTTCCGCCTGACAAATTTGATGCGGTTCTCAAAGCCGTTGAAGAGAACGGCGGTCAAGTTCACATCGGTTTTAATCTTTCCCGCAATGGCGAAAACGATTATCATATCATTTCTTGCCGTCAAAACGTTATAGATGTGTTCTTCAATGTGCTAAAGAAGGAAGGCCTCTGCCCAAACAAGCCTTCACTTGCTGCTTAA

Protein sequence

>Msa1159720

MSKLFEGFNVFLSRHLFPPDKFDAVLKAVEENGGQVHIGFNLSRNGENDYHIISCRQNVIDVFFNVLKKEGLCPNKPSLAA*