AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034300 MtrunA17_Chr7g0257121 77.143 70 13 1 2 71 4 70 2.86e-32 111
Msa1034300 MtrunA17_Chr1g0159641 53.571 56 26 0 3 58 5 60 9.02e-16 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034300 AT1G77320.1 43.396 53 30 0 2 54 4 56 3.86e-11 57.4
Msa1034300 AT1G77320.3 43.396 53 30 0 2 54 4 56 4.14e-11 57.4

Find 135 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGTTAGGTCCTCTTTA+TGG 0.208714 7_1:+69744199 Msa1034300:three_prime_UTR
TATATGGTTCTTCCTTTCTC+TGG 0.215900 7_1:+69741138 Msa1034300:three_prime_UTR
TGAGGAGGATTGTAAGTCTA+AGG 0.252399 7_1:+69744270 Msa1034300:three_prime_UTR
CTCTGTGCCCTCTTTGAATA+TGG 0.262226 7_1:-69744538 None:intergenic
TCATAGTCACAATATTAATA+TGG 0.282443 7_1:-69742568 None:intergenic
TCTGCCTCTTTAACAAATAA+TGG 0.287870 7_1:-69743047 None:intergenic
TTGAGCACCTCCTGTTCTTC+AGG 0.291121 7_1:-69744574 None:intergenic
GCAGCAAGTGAAGGCTTGTT+TGG 0.291299 7_1:-69739577 None:intergenic
CAAATTTGTCAGGCGGAAAT+AGG 0.302662 7_1:-69738904 None:intergenic
GCAATGAATTGAACTTTAAT+CGG 0.302946 7_1:+69743096 Msa1034300:three_prime_UTR
CATAAAATTTACAACCTGTT+TGG 0.308720 7_1:-69741185 None:intergenic
CATAGCCAGGAAAAGGATAT+TGG 0.309491 7_1:+69742900 Msa1034300:three_prime_UTR
AGATGAATTAATGATTGAAA+TGG 0.324358 7_1:+69740027 Msa1034300:three_prime_UTR
GATGAATTAATGATTGAAAT+GGG 0.328140 7_1:+69740028 Msa1034300:three_prime_UTR
AACCATTCATAAGTAACTAT+TGG 0.328810 7_1:-69741072 None:intergenic
AAGTAACTATTGGTTTCTTC+AGG 0.330112 7_1:-69741062 None:intergenic
GTATAAGACGGCAAAACTTT+GGG 0.339519 7_1:+69742544 Msa1034300:three_prime_UTR
GTCTTATACTTATCACCTTC+AGG 0.351041 7_1:-69742530 None:intergenic
CTTCACTTGCTGCTTAACTA+TGG 0.356671 7_1:+69739587 Msa1034300:exon
GAAAAGCTTATTCTACAAAA+TGG 0.360168 7_1:+69741288 Msa1034300:three_prime_UTR
TTATGTCTTGCAGTGGGCTT+TGG 0.361969 7_1:+69741035 Msa1034300:intron
AATGGAGAAGCTAAGTAATA+TGG 0.365938 7_1:+69743205 Msa1034300:three_prime_UTR
ATTAAAGTTCAATTCATTGC+TGG 0.372968 7_1:-69743093 None:intergenic
GATAAAGATCCACTCTCAAC+AGG 0.374142 7_1:-69742843 None:intergenic
AAGAAAGCAATGGAGGCATT+TGG 0.384504 7_1:+69744331 Msa1034300:three_prime_UTR
TGTTCCTCAAGAGTCATATA+TGG 0.385478 7_1:+69741122 Msa1034300:three_prime_UTR
ACGGATAGCATGTCTGAATA+AGG 0.387128 7_1:+69742812 Msa1034300:intron
TATCATTTAAATACAAGCAT+TGG 0.401217 7_1:-69743247 None:intergenic
AGTATAAGACGGCAAAACTT+TGG 0.402788 7_1:+69742543 Msa1034300:three_prime_UTR
CAGCAAGTGAAGGCTTGTTT+GGG 0.403127 7_1:-69739576 None:intergenic
ATCATTTAAATACAAGCATT+GGG 0.405407 7_1:-69743246 None:intergenic
TGTTTGGGCTCCAGAGTATA+AGG 0.415227 7_1:+69740105 Msa1034300:three_prime_UTR
ATATGGTTCTTCCTTTCTCT+GGG 0.421830 7_1:+69741139 Msa1034300:three_prime_UTR
TTAATATTGTGACTATGAAA+TGG 0.422555 7_1:+69742573 Msa1034300:three_prime_UTR
GATTGCAGAATATCACTTGT+TGG 0.423098 7_1:+69743167 Msa1034300:three_prime_UTR
AATTCATTGCTGGTCTGTAA+TGG 0.425432 7_1:-69743083 None:intergenic
ATAGCCAGGAAAAGGATATT+GGG 0.436818 7_1:+69742901 Msa1034300:three_prime_UTR
TGTTCCATTATTTGTTAAAG+AGG 0.438999 7_1:+69743043 Msa1034300:three_prime_UTR
GTCATCAGACTCAGAATCAT+TGG 0.439386 7_1:-69743126 None:intergenic
AACCAATAGTTACTTATGAA+TGG 0.439724 7_1:+69741070 Msa1034300:three_prime_UTR
GAATAGACTCACATTTCTGT+TGG 0.448184 7_1:-69743296 None:intergenic
TAATAATCAACCTGAAGAAC+AGG 0.454496 7_1:+69744564 Msa1034300:three_prime_UTR
AAAGAAGAATCTAGGAATGA+AGG 0.461492 7_1:+69744018 Msa1034300:three_prime_UTR
CTTGAATGATCCGGTTAGAA+AGG 0.471395 7_1:+69744396 Msa1034300:three_prime_UTR
ATTACGCTGTTAAAACCTCT+TGG 0.471475 7_1:+69743571 Msa1034300:three_prime_UTR
TGAGGCTTATAAGCTTTATG+AGG 0.472144 7_1:+69744252 Msa1034300:three_prime_UTR
AGAACCGCATCAAATTTGTC+AGG 0.474476 7_1:-69738914 None:intergenic
GATGACTTGAGGGCAAAGTT+AGG 0.480088 7_1:+69744187 Msa1034300:three_prime_UTR
CACTGTACCGTTGTAGAACA+TGG 0.481410 7_1:-69743626 None:intergenic
CAATGAATTGAACTTTAATC+GGG 0.484868 7_1:+69743097 Msa1034300:three_prime_UTR
CTCAACAGCGCAACATAGCC+AGG 0.485889 7_1:+69742887 Msa1034300:three_prime_UTR
AGTTGGTGGAGGCATCCAAT+AGG 0.485896 7_1:+69743990 Msa1034300:three_prime_UTR
TGGCTTTGATGCGGATCAAA+AGG 0.486466 7_1:+69739632 Msa1034300:three_prime_UTR
AAGATGTCGAAGTTATTTGA+AGG 0.489072 7_1:+69738857 Msa1034300:exon
CTCAAAGCCGTTGAAGAGAA+TGG 0.492455 7_1:+69738935 Msa1034300:CDS
GGAGATGGAATATGTAAGAA+TGG 0.493834 7_1:+69744162 Msa1034300:three_prime_UTR
GCGCGTTTGCTTCGAGATTG+CGG 0.499064 7_1:+69744114 Msa1034300:three_prime_UTR
GCAATGCTCAGATGAGCATC+AGG 0.499805 7_1:+69741098 Msa1034300:three_prime_UTR
ATTTGAATCTGCGGCTCTTG+AGG 0.500270 7_1:-69742943 None:intergenic
TTCAGATAAGCGCAAAGAGA+TGG 0.504618 7_1:+69741266 Msa1034300:intron
TGTTACGTACTTGAATGATC+CGG 0.504932 7_1:+69744387 Msa1034300:three_prime_UTR
GATATTGGGATAATGCAATC+TGG 0.505586 7_1:+69742915 Msa1034300:three_prime_UTR
TATCTTCACGTAACGTGACT+AGG 0.506059 7_1:+69742862 Msa1034300:three_prime_UTR
AGTAATATGGTGCGTAAAGG+TGG 0.506996 7_1:+69743218 Msa1034300:three_prime_UTR
TGTGTGACTGGAATCCAAAC+AGG 0.507328 7_1:+69741171 Msa1034300:three_prime_UTR
AACTAGTATATTTGAATCTG+CGG 0.510360 7_1:-69742952 None:intergenic
CTCTTCTTCTCTATCTCTCG+TGG 0.510362 7_1:-69738831 None:intergenic
AGGATCTACATTTAAAGACT+TGG 0.512293 7_1:-69742982 None:intergenic
ATCTCTAAGCATCATGAGAT+GGG 0.513813 7_1:+69744304 Msa1034300:three_prime_UTR
GGGTTAAAGATCTGTGTGAC+TGG 0.518889 7_1:+69741159 Msa1034300:three_prime_UTR
AAACATTGAGAACCACTTCA+AGG 0.518932 7_1:+69744420 Msa1034300:three_prime_UTR
AAGAATGGACGATGACTTGA+GGG 0.519266 7_1:+69744177 Msa1034300:three_prime_UTR
GCTGTCAAAATACTTGCCTC+TGG 0.520073 7_1:+69739612 Msa1034300:three_prime_UTR
GGCTTATAAGCTTTATGAGG+AGG 0.520574 7_1:+69744255 Msa1034300:three_prime_UTR
GGAATTAAAGAGACGACAAA+AGG 0.520847 7_1:+69744135 Msa1034300:three_prime_UTR
TGTTAAAACCTCTTGGCTTG+AGG 0.521313 7_1:+69743578 Msa1034300:three_prime_UTR
TGAATTAATGATTGAAATGG+GGG 0.522521 7_1:+69740030 Msa1034300:three_prime_UTR
TTCTGCAATCTGCTAAATAC+CGG 0.522822 7_1:-69743154 None:intergenic
AACATTGAGAACCACTTCAA+GGG 0.524205 7_1:+69744421 Msa1034300:three_prime_UTR
ATGTACCAGACCTTATACTC+TGG 0.528773 7_1:-69740115 None:intergenic
AGCGCAACATAGCCAGGAAA+AGG 0.529842 7_1:+69742893 Msa1034300:three_prime_UTR
CAGATCTTTAACCCAGAGAA+AGG 0.530794 7_1:-69741150 None:intergenic
GTGAAGGCTTGTTTGGGCAG+AGG 0.531750 7_1:-69739570 None:intergenic
TTGACCGCCATTCTCTTCAA+CGG 0.534355 7_1:-69738942 None:intergenic
CATCTCTAAGCATCATGAGA+TGG 0.536901 7_1:+69744303 Msa1034300:three_prime_UTR
GTTCTTCAATGTGCTAAAGA+AGG 0.540178 7_1:+69739543 Msa1034300:CDS
CACTTGCTGCTTAACTATGG+AGG 0.540521 7_1:+69739590 Msa1034300:exon
AGTTGACGCACATAGTAGTC+GGG 0.543297 7_1:+69743270 Msa1034300:three_prime_UTR
CTAAGTAATATGGTGCGTAA+AGG 0.550132 7_1:+69743215 Msa1034300:three_prime_UTR
ATGAATTAATGATTGAAATG+GGG 0.551763 7_1:+69740029 Msa1034300:three_prime_UTR
TTGATTATGCTGCTTCTCGT+AGG 0.553243 7_1:+69744080 Msa1034300:three_prime_UTR
AGATGTCGAAGTTATTTGAA+GGG 0.554510 7_1:+69738858 Msa1034300:exon
CTGAGTCTGATGACAATGAC+CGG 0.572569 7_1:+69743135 Msa1034300:three_prime_UTR
GTAGTGAGAACTGTTGCTCT+AGG 0.573509 7_1:+69743543 Msa1034300:three_prime_UTR
AGATCCACTCTCAACAGGGT+TGG 0.574398 7_1:-69742838 None:intergenic
AAGTTGACGCACATAGTAGT+CGG 0.576552 7_1:+69743269 Msa1034300:three_prime_UTR
GCGGAAATAGGTGTCGCGAT+AGG 0.579534 7_1:-69738892 None:intergenic
GAGGAGGATTGTAAGTCTAA+GGG 0.581483 7_1:+69744271 Msa1034300:three_prime_UTR
TTCAATGTGCTAAAGAAGGA+AGG 0.584964 7_1:+69739547 Msa1034300:CDS
TCAAAATCATCCCCTTGAAG+TGG 0.585463 7_1:-69744432 None:intergenic
TAAGAATGGACGATGACTTG+AGG 0.588663 7_1:+69744176 Msa1034300:three_prime_UTR
AATATGGTGCGTAAAGGTGG+AGG 0.590391 7_1:+69743221 Msa1034300:three_prime_UTR
ACGACAAAAGGAGATGGAGA+TGG 0.591211 7_1:+69744147 Msa1034300:three_prime_UTR
AAAGAGACGACAAAAGGAGA+TGG 0.591489 7_1:+69744141 Msa1034300:three_prime_UTR
AAGCTTATTCTACAAAATGG+TGG 0.594920 7_1:+69741291 Msa1034300:three_prime_UTR
GATGGGATTTAAGAAAGCAA+TGG 0.597083 7_1:+69744321 Msa1034300:three_prime_UTR
GAGTCCAACCCTGTTGAGAG+TGG 0.598020 7_1:+69742834 Msa1034300:three_prime_UTR
TTTGTAGTTGATAAATCACA+TGG 0.601709 7_1:+69744703 Msa1034300:three_prime_UTR
TGTTGACTTAGCACAAGTGC+TGG 0.601901 7_1:+69744057 Msa1034300:three_prime_UTR
TGTGCCCTCTTTGAATATGG+AGG 0.602441 7_1:-69744535 None:intergenic
ACTTGCCTCTGGCTTTGATG+CGG 0.603394 7_1:+69739623 Msa1034300:three_prime_UTR
TCCGCCTGACAAATTTGATG+CGG 0.608919 7_1:+69738910 Msa1034300:CDS
CATAGTTAAGCAGCAAGTGA+AGG 0.611723 7_1:-69739586 None:intergenic
ATGAGCCTCCATATTCAAAG+AGG 0.613128 7_1:+69744530 Msa1034300:three_prime_UTR
AGAACCATATATGACTCTTG+AGG 0.617430 7_1:-69741126 None:intergenic
TGAAGGTGATAAGTATAAGA+CGG 0.620903 7_1:+69742532 Msa1034300:three_prime_UTR
TATAAGACGGCAAAACTTTG+GGG 0.621024 7_1:+69742545 Msa1034300:three_prime_UTR
ACAAAGTTTAAATCTGATGA+CGG 0.625224 7_1:-69740070 None:intergenic
CATCTCATGATGCTTAGAGA+TGG 0.626228 7_1:-69744302 None:intergenic
GATGAATCTATTGCTCGAAG+AGG 0.630129 7_1:+69742599 Msa1034300:three_prime_UTR
ACATTGAGAACCACTTCAAG+GGG 0.633314 7_1:+69744422 Msa1034300:three_prime_UTR
ACCGCATCAAATTTGTCAGG+CGG 0.635534 7_1:-69738911 None:intergenic
GGGATTTAAGAAAGCAATGG+AGG 0.638447 7_1:+69744324 Msa1034300:three_prime_UTR
TAATCAACCTGAAGAACAGG+AGG 0.638857 7_1:+69744567 Msa1034300:three_prime_UTR
AACAAGTCCATGTTCTACAA+CGG 0.651160 7_1:+69743619 Msa1034300:three_prime_UTR
TTGATCCGCATCAAAGCCAG+AGG 0.652199 7_1:-69739628 None:intergenic
TCATTGCTGGTCTGTAATGG+AGG 0.662412 7_1:-69743080 None:intergenic
TGAGCCTCCATATTCAAAGA+GGG 0.666941 7_1:+69744531 Msa1034300:three_prime_UTR
ATCACAATCCTCAAGCCAAG+AGG 0.666970 7_1:-69743586 None:intergenic
ATAAAGATCCACTCTCAACA+GGG 0.671428 7_1:-69742842 None:intergenic
TTGTAGTTGATAAATCACAT+GGG 0.673319 7_1:+69744704 Msa1034300:three_prime_UTR
AATGGCGGTCAAGTTCACAT+CGG 0.717079 7_1:+69738953 Msa1034300:CDS
GAATTAATGATTGAAATGGG+GGG 0.725048 7_1:+69740031 Msa1034300:three_prime_UTR
AAAGCCGTTGAAGAGAATGG+CGG 0.740750 7_1:+69738938 Msa1034300:CDS
TATTCAAAGAGGGCACAGAG+TGG 0.749556 7_1:+69744541 Msa1034300:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATTTTGAGTTTAAAT+AGG + chr7_1:69741719-69741738 Msa1034300:intron 10.0%
!!! TTTTATATATTTGTTTTGTA+AGG + chr7_1:69742283-69742302 Msa1034300:intron 10.0%
!! GATATTAAGAATAAATTTAA+TGG + chr7_1:69743320-69743339 Msa1034300:intron 10.0%
!! ACAACTTTAATATTTACAAT+AGG - chr7_1:69740908-69740927 None:intergenic 15.0%
!! TATTTGATAGAATTGTAAAA+AGG - chr7_1:69741370-69741389 None:intergenic 15.0%
!!! ATAAAATTTGTTAGTATAAG+CGG - chr7_1:69741700-69741719 None:intergenic 15.0%
!!! TACTTTTTCGTATTTTTATA+CGG + chr7_1:69742793-69742812 Msa1034300:intron 15.0%
!! TAAATCATAAATATAGGAAA+AGG - chr7_1:69743483-69743502 None:intergenic 15.0%
!! AGAAGATAAATCATAAATAT+AGG - chr7_1:69743489-69743508 None:intergenic 15.0%
!!! AAAACTTTAAAATTTTTGAG+TGG + chr7_1:69743880-69743899 Msa1034300:intron 15.0%
!! ATAACAAAAAATCAGATAGT+GGG - chr7_1:69739089-69739108 None:intergenic 20.0%
!! AATAACAAAAAATCAGATAG+TGG - chr7_1:69739090-69739109 None:intergenic 20.0%
!!! TTTAAAGATCTAAAATCCTT+CGG + chr7_1:69739126-69739145 Msa1034300:intron 20.0%
!!! ATAGATTTTTTGTTTTAGAC+CGG + chr7_1:69739363-69739382 Msa1034300:intron 20.0%
!! AGATGAATTAATGATTGAAA+TGG + chr7_1:69740027-69740046 Msa1034300:three_prime_UTR 20.0%
!! GATGAATTAATGATTGAAAT+GGG + chr7_1:69740028-69740047 Msa1034300:three_prime_UTR 20.0%
!! ATGAATTAATGATTGAAATG+GGG + chr7_1:69740029-69740048 Msa1034300:three_prime_UTR 20.0%
!! TGGTATTGTAAAATTAGTAA+AGG + chr7_1:69740559-69740578 Msa1034300:intron 20.0%
!! AAGCAAAAAAAAAAAAGTGA+AGG - chr7_1:69740742-69740761 None:intergenic 20.0%
!!! TTCACTTTTTTTTTTTTGCT+TGG + chr7_1:69740741-69740760 Msa1034300:intron 20.0%
!! TTATTAATAAGTGCAAACAA+GGG - chr7_1:69741617-69741636 None:intergenic 20.0%
!! ATTATTAATAAGTGCAAACA+AGG - chr7_1:69741618-69741637 None:intergenic 20.0%
!!! TATTTTGAGTTTAAATAGGT+AGG + chr7_1:69741723-69741742 Msa1034300:intron 20.0%
!!! ATTCATTTTTACAAGAATTC+AGG + chr7_1:69741753-69741772 Msa1034300:intron 20.0%
!!! CAGTATTTAACTATTTGTTA+TGG + chr7_1:69741805-69741824 Msa1034300:intron 20.0%
!!! TTCAATTTTAACATATAGTG+TGG - chr7_1:69741913-69741932 None:intergenic 20.0%
!!! TTTTATAGTATCTGTAGATT+TGG + chr7_1:69741945-69741964 Msa1034300:intron 20.0%
!!! AAGTTGAAATTTTGTTTAAC+AGG + chr7_1:69742227-69742246 Msa1034300:intron 20.0%
!! TCATAGTCACAATATTAATA+TGG - chr7_1:69742571-69742590 None:intergenic 20.0%
!! TTAATATTGTGACTATGAAA+TGG + chr7_1:69742573-69742592 Msa1034300:three_prime_UTR 20.0%
!! AATAAGTGTAAAGAAATGAA+AGG - chr7_1:69742717-69742736 None:intergenic 20.0%
!! ATCATTTAAATACAAGCATT+GGG - chr7_1:69743249-69743268 None:intergenic 20.0%
!! TATCATTTAAATACAAGCAT+TGG - chr7_1:69743250-69743269 None:intergenic 20.0%
!! TAAATATAGGAAAAGGAATA+TGG - chr7_1:69743476-69743495 None:intergenic 20.0%
!!! TATGATATTCTTTTTCCAAA+AGG + chr7_1:69743651-69743670 Msa1034300:three_prime_UTR 20.0%
!!! GTTTTCTAGTTCTTAAATTT+AGG + chr7_1:69743788-69743807 Msa1034300:intron 20.0%
!! GACTTTATTAATTGTTTGAA+TGG + chr7_1:69743953-69743972 Msa1034300:intron 20.0%
!!! ATTCTTCTTTTTTATCCTAT+TGG - chr7_1:69744008-69744027 None:intergenic 20.0%
! ATTTCTCCTATAATTAAGTG+CGG - chr7_1:69739222-69739241 None:intergenic 25.0%
!!! TAAATTGATTTTCATAGCAG+AGG + chr7_1:69739467-69739486 Msa1034300:intron 25.0%
! TGATAAAAGAAACAAAACTG+AGG - chr7_1:69739504-69739523 None:intergenic 25.0%
!! TGTTTCTTTTATCATTGAGT+AGG + chr7_1:69739510-69739529 Msa1034300:intron 25.0%
!! TTAAACCTTAGGATTTTAGA+GGG - chr7_1:69739907-69739926 None:intergenic 25.0%
! TAACTGATAACTTAAACCTT+AGG - chr7_1:69739918-69739937 None:intergenic 25.0%
!!! AGTTATCAGTTATTTTCTCT+TGG + chr7_1:69739926-69739945 Msa1034300:intron 25.0%
!!! TTCCTATTTTTGTTCTCAAT+TGG + chr7_1:69739971-69739990 Msa1034300:intron 25.0%
! TTCCAATTGAGAACAAAAAT+AGG - chr7_1:69739976-69739995 None:intergenic 25.0%
! TGAATTAATGATTGAAATGG+GGG + chr7_1:69740030-69740049 Msa1034300:three_prime_UTR 25.0%
! ACAAAGTTTAAATCTGATGA+CGG - chr7_1:69740073-69740092 None:intergenic 25.0%
!! TTTTATTCTTCCAGTCTAAT+TGG + chr7_1:69740188-69740207 Msa1034300:intron 25.0%
! AGTAGTATGAATAAAACAGA+AGG - chr7_1:69740231-69740250 None:intergenic 25.0%
!! GGTGGTAGTATAAATATTTT+AGG + chr7_1:69740426-69740445 Msa1034300:intron 25.0%
! GATTTATCTTGAACTAAAGA+TGG + chr7_1:69740485-69740504 Msa1034300:intron 25.0%
!! TCTCTAAAAATAACCATTGT+TGG + chr7_1:69740693-69740712 Msa1034300:intron 25.0%
! CAATTAAAATCTCAGAGATT+GGG - chr7_1:69740975-69740994 None:intergenic 25.0%
! ACAATTAAAATCTCAGAGAT+TGG - chr7_1:69740976-69740995 None:intergenic 25.0%
! AACCAATAGTTACTTATGAA+TGG + chr7_1:69741070-69741089 Msa1034300:three_prime_UTR 25.0%
! AACCATTCATAAGTAACTAT+TGG - chr7_1:69741075-69741094 None:intergenic 25.0%
! CATAAAATTTACAACCTGTT+TGG - chr7_1:69741188-69741207 None:intergenic 25.0%
! GAAAAGCTTATTCTACAAAA+TGG + chr7_1:69741288-69741307 Msa1034300:three_prime_UTR 25.0%
! GAAAAAAACTGCATAAATCA+AGG - chr7_1:69741455-69741474 None:intergenic 25.0%
!! TCTTTCACAAATTTGCTTTA+AGG + chr7_1:69741489-69741508 Msa1034300:intron 25.0%
! CTAAAAGGTAATAGACTAAT+AGG - chr7_1:69741662-69741681 None:intergenic 25.0%
! TTCTTATCTGTTAGAATGAA+TGG + chr7_1:69741831-69741850 Msa1034300:intron 25.0%
! TTACACTGGTAATAATAACT+AGG + chr7_1:69742021-69742040 Msa1034300:intron 25.0%
! GATACATTTAGTCAAGAATT+CGG + chr7_1:69742043-69742062 Msa1034300:intron 25.0%
! ATACATTTAGTCAAGAATTC+GGG + chr7_1:69742044-69742063 Msa1034300:intron 25.0%
!!! AATCTTTTTTCTACATTAGC+TGG + chr7_1:69742197-69742216 Msa1034300:intron 25.0%
! AATTCAAAGATCTGTTATTG+AGG + chr7_1:69742464-69742483 Msa1034300:intron 25.0%
! GTAAAGAAATGAAAGGATAA+CGG - chr7_1:69742710-69742729 None:intergenic 25.0%
! AACTAGTATATTTGAATCTG+CGG - chr7_1:69742955-69742974 None:intergenic 25.0%
!! TGTTCCATTATTTGTTAAAG+AGG + chr7_1:69743043-69743062 Msa1034300:three_prime_UTR 25.0%
! ATTAAAGTTCAATTCATTGC+TGG - chr7_1:69743096-69743115 None:intergenic 25.0%
! GCAATGAATTGAACTTTAAT+CGG + chr7_1:69743096-69743115 Msa1034300:three_prime_UTR 25.0%
! CAATGAATTGAACTTTAATC+GGG + chr7_1:69743097-69743116 Msa1034300:three_prime_UTR 25.0%
! GCTTTCCTATGAATTTAATT+TGG + chr7_1:69743446-69743465 Msa1034300:intron 25.0%
! GTTTGCCAAATTAAATTCAT+AGG - chr7_1:69743454-69743473 None:intergenic 25.0%
!!! CTACTTTTTGGTTATCTATT+AGG + chr7_1:69743714-69743733 Msa1034300:intron 25.0%
! ATTAATTGTTTGAATGGTTC+AGG + chr7_1:69743959-69743978 Msa1034300:intron 25.0%
! TTAATTGTTTGAATGGTTCA+GGG + chr7_1:69743960-69743979 Msa1034300:intron 25.0%
! AGGATAAAAAAGAAGAATCT+AGG + chr7_1:69744010-69744029 Msa1034300:three_prime_UTR 25.0%
!!! TCAATCTTCAACTCATTTTT+AGG - chr7_1:69744235-69744254 None:intergenic 25.0%
!! TAAAAATGAGTTGAAGATTG+AGG + chr7_1:69744234-69744253 Msa1034300:three_prime_UTR 25.0%
!! AGAAACAAATTTTGCAACAT+CGG - chr7_1:69744482-69744501 None:intergenic 25.0%
!!! TTTGTAGTTGATAAATCACA+TGG + chr7_1:69744703-69744722 Msa1034300:three_prime_UTR 25.0%
!!! TTGTAGTTGATAAATCACAT+GGG + chr7_1:69744704-69744723 Msa1034300:three_prime_UTR 25.0%
AAGATGTCGAAGTTATTTGA+AGG + chr7_1:69738857-69738876 Msa1034300:exon 30.0%
AGATGTCGAAGTTATTTGAA+GGG + chr7_1:69738858-69738877 Msa1034300:exon 30.0%
! AGAAATTACGTACGTTTTGA+CGG - chr7_1:69739027-69739046 None:intergenic 30.0%
TCAAAACGTACGTAATTTCT+TGG + chr7_1:69739027-69739046 Msa1034300:intron 30.0%
!! ATCATGTGTTAGTGTTGTTT+AGG + chr7_1:69739257-69739276 Msa1034300:intron 30.0%
!! AAAAACCCTCTAAAATCCTA+AGG + chr7_1:69739899-69739918 Msa1034300:intron 30.0%
! CTTAAACCTTAGGATTTTAG+AGG - chr7_1:69739908-69739927 None:intergenic 30.0%
!!! ATTCATCTATTTTAACCTGC+AGG - chr7_1:69740015-69740034 None:intergenic 30.0%
GAATTAATGATTGAAATGGG+GGG + chr7_1:69740031-69740050 Msa1034300:three_prime_UTR 30.0%
TTGTCATCGTGAAAAATGTT+TGG + chr7_1:69740089-69740108 Msa1034300:three_prime_UTR 30.0%
TGTCATCGTGAAAAATGTTT+GGG + chr7_1:69740090-69740109 Msa1034300:three_prime_UTR 30.0%
GTATGAATAAAACAGAAGGA+AGG - chr7_1:69740227-69740246 None:intergenic 30.0%
! TGCTTTTATGTGATACATTG+GGG - chr7_1:69740300-69740319 None:intergenic 30.0%
! GTGCTTTTATGTGATACATT+GGG - chr7_1:69740301-69740320 None:intergenic 30.0%
! AGTGCTTTTATGTGATACAT+TGG - chr7_1:69740302-69740321 None:intergenic 30.0%
TGTAAAAATCATGTAGTCCA+AGG + chr7_1:69740346-69740365 Msa1034300:intron 30.0%
GTAAAAATCATGTAGTCCAA+GGG + chr7_1:69740347-69740366 Msa1034300:intron 30.0%
! GCGTTAATTAACTCTACTTT+TGG + chr7_1:69740392-69740411 Msa1034300:intron 30.0%
!! TCACTGGTTGTATTATTTTC+TGG + chr7_1:69740539-69740558 Msa1034300:intron 30.0%
! CTACAACAAACGTTTTTCAT+TGG + chr7_1:69740716-69740735 Msa1034300:intron 30.0%
!!! AGCTCATATGTTTTGTTTCT+TGG + chr7_1:69740810-69740829 Msa1034300:intron 30.0%
!! TGGTCTATCTCATTTAGTTT+TGG + chr7_1:69740830-69740849 Msa1034300:intron 30.0%
!!! GGTCTATCTCATTTAGTTTT+GGG + chr7_1:69740831-69740850 Msa1034300:intron 30.0%
!!! ATCTCATTTAGTTTTGGGTT+TGG + chr7_1:69740836-69740855 Msa1034300:intron 30.0%
TAAGTAATCATCTAGATGCA+GGG - chr7_1:69740873-69740892 None:intergenic 30.0%
!! AAGTAACTATTGGTTTCTTC+AGG - chr7_1:69741065-69741084 None:intergenic 30.0%
AAGCTTATTCTACAAAATGG+TGG + chr7_1:69741291-69741310 Msa1034300:three_prime_UTR 30.0%
ATTATCATTTGTGCCAGATA+AGG - chr7_1:69741568-69741587 None:intergenic 30.0%
TAGGTCAACAATATTTAGTC+AGG - chr7_1:69741643-69741662 None:intergenic 30.0%
!! AAATTTGTTAGTATAAGCGG+AGG - chr7_1:69741697-69741716 None:intergenic 30.0%
ATGTATCAATACATCAAAGC+AGG - chr7_1:69741783-69741802 None:intergenic 30.0%
! CACTGATTGTAAGTACATAA+GGG - chr7_1:69742374-69742393 None:intergenic 30.0%
! TCACTGATTGTAAGTACATA+AGG - chr7_1:69742375-69742394 None:intergenic 30.0%
ACTTAATTATTCAGTCAGAG+AGG - chr7_1:69742439-69742458 None:intergenic 30.0%
TGAAGGTGATAAGTATAAGA+CGG + chr7_1:69742532-69742551 Msa1034300:three_prime_UTR 30.0%
! TGTTTAGTTCAAAACCCAAA+AGG - chr7_1:69742659-69742678 None:intergenic 30.0%
AAGCTTATCTTATGGTAACA+GGG - chr7_1:69742755-69742774 None:intergenic 30.0%
AGGATCTACATTTAAAGACT+TGG - chr7_1:69742985-69743004 None:intergenic 30.0%
!!! CATATATTTTGACTGTGTAG+CGG - chr7_1:69743009-69743028 None:intergenic 30.0%
TCTGCCTCTTTAACAAATAA+TGG - chr7_1:69743050-69743069 None:intergenic 30.0%
AATGGAGAAGCTAAGTAATA+TGG + chr7_1:69743205-69743224 Msa1034300:three_prime_UTR 30.0%
GTATCAATGTATACGATTTC+TGG + chr7_1:69743403-69743422 Msa1034300:intron 30.0%
!! ATTTGTGTTTTTACAGGGAA+AGG + chr7_1:69743514-69743533 Msa1034300:intron 30.0%
!! TTTGTGTTTTTACAGGGAAA+GGG + chr7_1:69743515-69743534 Msa1034300:intron 30.0%
! AAACATGATAACACACCTTT+TGG - chr7_1:69743669-69743688 None:intergenic 30.0%
AATTAATAAAGTCGACGAAG+TGG - chr7_1:69743946-69743965 None:intergenic 30.0%
AAAGAAGAATCTAGGAATGA+AGG + chr7_1:69744018-69744037 Msa1034300:three_prime_UTR 30.0%
!! TCAACTCATTTTTAGGCTTT+TGG - chr7_1:69744228-69744247 None:intergenic 30.0%
! TCAATGTTTTCCTTTCTAAC+CGG - chr7_1:69744409-69744428 None:intergenic 30.0%
! GAAACAAATTTTGCAACATC+GGG - chr7_1:69744481-69744500 None:intergenic 30.0%
TAATAATCAACCTGAAGAAC+AGG + chr7_1:69744564-69744583 Msa1034300:three_prime_UTR 30.0%
!! AAAATCAGATAGTGGGATAG+TGG - chr7_1:69739082-69739101 None:intergenic 35.0%
CTAACACCGCACTTAATTAT+AGG + chr7_1:69739213-69739232 Msa1034300:intron 35.0%
!! TGTTAGTGTTGTTTAGGTGT+CGG + chr7_1:69739263-69739282 Msa1034300:intron 35.0%
! AGCGTTTAGGTTTAAGCATT+TGG + chr7_1:69739394-69739413 Msa1034300:intron 35.0%
ACTGCATGTGTATATATGTG+TGG - chr7_1:69739447-69739466 None:intergenic 35.0%
GTTCTTCAATGTGCTAAAGA+AGG + chr7_1:69739543-69739562 Msa1034300:CDS 35.0%
TTCAATGTGCTAAAGAAGGA+AGG + chr7_1:69739547-69739566 Msa1034300:CDS 35.0%
!!! AGTTGCTTTTTGAAGGGTTT+TGG + chr7_1:69739713-69739732 Msa1034300:intron 35.0%
!! GGATTTTAGAGGGTTTTTGA+GGG - chr7_1:69739897-69739916 None:intergenic 35.0%
!! AGGATTTTAGAGGGTTTTTG+AGG - chr7_1:69739898-69739917 None:intergenic 35.0%
GAGAACAAAAATAGGAAGAG+AGG - chr7_1:69739968-69739987 None:intergenic 35.0%
TATTATTGTATGTGACCTGC+AGG + chr7_1:69739997-69740016 Msa1034300:intron 35.0%
GAAGAAAAGACCAATTAGAC+TGG - chr7_1:69740201-69740220 None:intergenic 35.0%
! GCTTTTATGTGATACATTGG+GGG - chr7_1:69740299-69740318 None:intergenic 35.0%
!! TGTATCACATAAAAGCACTC+AGG + chr7_1:69740303-69740322 Msa1034300:intron 35.0%
!! GTATCACATAAAAGCACTCA+GGG + chr7_1:69740304-69740323 Msa1034300:intron 35.0%
AGGAAGATTCTGGTCATATT+TGG + chr7_1:69740370-69740389 Msa1034300:intron 35.0%
!! CTACTTTTGGCAAGTAGTTT+AGG + chr7_1:69740405-69740424 Msa1034300:intron 35.0%
TGAAGCTTATGTTAGTTCAC+TGG + chr7_1:69740523-69740542 Msa1034300:intron 35.0%
GTAAGTAATCATCTAGATGC+AGG - chr7_1:69740874-69740893 None:intergenic 35.0%
TGTTCCTCAAGAGTCATATA+TGG + chr7_1:69741122-69741141 Msa1034300:three_prime_UTR 35.0%
AGAACCATATATGACTCTTG+AGG - chr7_1:69741129-69741148 None:intergenic 35.0%
TATATGGTTCTTCCTTTCTC+TGG + chr7_1:69741138-69741157 Msa1034300:three_prime_UTR 35.0%
ATATGGTTCTTCCTTTCTCT+GGG + chr7_1:69741139-69741158 Msa1034300:three_prime_UTR 35.0%
TTCAAATGTTCCTTGAGAAG+AGG + chr7_1:69741417-69741436 Msa1034300:intron 35.0%
GAAAAGGTTAATGCAGACAT+GGG - chr7_1:69741546-69741565 None:intergenic 35.0%
! GCATTAACCTTTTCCTTATC+TGG + chr7_1:69741552-69741571 Msa1034300:intron 35.0%
ATTTGTGCCAGATAAGGAAA+AGG - chr7_1:69741562-69741581 None:intergenic 35.0%
AGGTATGGATGTTCTCTAAA+AGG - chr7_1:69741677-69741696 None:intergenic 35.0%
TAAAAACCTGTCTGCACAAA+AGG - chr7_1:69742268-69742287 None:intergenic 35.0%
ATAAGGGATACTAATGCCTA+AGG - chr7_1:69742358-69742377 None:intergenic 35.0%
GTCTTATACTTATCACCTTC+AGG - chr7_1:69742533-69742552 None:intergenic 35.0%
AGTATAAGACGGCAAAACTT+TGG + chr7_1:69742543-69742562 Msa1034300:three_prime_UTR 35.0%
GTATAAGACGGCAAAACTTT+GGG + chr7_1:69742544-69742563 Msa1034300:three_prime_UTR 35.0%
TATAAGACGGCAAAACTTTG+GGG + chr7_1:69742545-69742564 Msa1034300:three_prime_UTR 35.0%
CAAGCTTATCTTATGGTAAC+AGG - chr7_1:69742756-69742775 None:intergenic 35.0%
CTGTTACCATAAGATAAGCT+TGG + chr7_1:69742754-69742773 Msa1034300:intron 35.0%
ATAAAGATCCACTCTCAACA+GGG - chr7_1:69742845-69742864 None:intergenic 35.0%
ATAGCCAGGAAAAGGATATT+GGG + chr7_1:69742901-69742920 Msa1034300:three_prime_UTR 35.0%
! TTATCCCAATATCCTTTTCC+TGG - chr7_1:69742908-69742927 None:intergenic 35.0%
GATATTGGGATAATGCAATC+TGG + chr7_1:69742915-69742934 Msa1034300:three_prime_UTR 35.0%
! AATTCATTGCTGGTCTGTAA+TGG - chr7_1:69743086-69743105 None:intergenic 35.0%
TTCTGCAATCTGCTAAATAC+CGG - chr7_1:69743157-69743176 None:intergenic 35.0%
GATTGCAGAATATCACTTGT+TGG + chr7_1:69743167-69743186 Msa1034300:three_prime_UTR 35.0%
!!! TGGTTTTGAAGCTTCTGAAA+TGG + chr7_1:69743187-69743206 Msa1034300:three_prime_UTR 35.0%
CTAAGTAATATGGTGCGTAA+AGG + chr7_1:69743215-69743234 Msa1034300:three_prime_UTR 35.0%
GAATAGACTCACATTTCTGT+TGG - chr7_1:69743299-69743318 None:intergenic 35.0%
! GGATGTTAGTTTCAGAAATG+TGG + chr7_1:69743424-69743443 Msa1034300:intron 35.0%
!! TCCTGCATTTGTGTTTTTAC+AGG + chr7_1:69743508-69743527 Msa1034300:intron 35.0%
!! CCTGCATTTGTGTTTTTACA+GGG + chr7_1:69743509-69743528 Msa1034300:intron 35.0%
ATTACGCTGTTAAAACCTCT+TGG + chr7_1:69743571-69743590 Msa1034300:three_prime_UTR 35.0%
AACAAGTCCATGTTCTACAA+CGG + chr7_1:69743619-69743638 Msa1034300:three_prime_UTR 35.0%
!! TGTGTTCTGTGTCTACTTTT+TGG + chr7_1:69743702-69743721 Msa1034300:intron 35.0%
GGAATTAAAGAGACGACAAA+AGG + chr7_1:69744135-69744154 Msa1034300:three_prime_UTR 35.0%
GGAGATGGAATATGTAAGAA+TGG + chr7_1:69744162-69744181 Msa1034300:three_prime_UTR 35.0%
! TGAGGCTTATAAGCTTTATG+AGG + chr7_1:69744252-69744271 Msa1034300:three_prime_UTR 35.0%
ATCTCTAAGCATCATGAGAT+GGG + chr7_1:69744304-69744323 Msa1034300:three_prime_UTR 35.0%
GATGGGATTTAAGAAAGCAA+TGG + chr7_1:69744321-69744340 Msa1034300:three_prime_UTR 35.0%
TGTTACGTACTTGAATGATC+CGG + chr7_1:69744387-69744406 Msa1034300:three_prime_UTR 35.0%
AAACATTGAGAACCACTTCA+AGG + chr7_1:69744420-69744439 Msa1034300:three_prime_UTR 35.0%
AACATTGAGAACCACTTCAA+GGG + chr7_1:69744421-69744440 Msa1034300:three_prime_UTR 35.0%
CAAATTTGTCAGGCGGAAAT+AGG - chr7_1:69738907-69738926 None:intergenic 40.0%
AGAACCGCATCAAATTTGTC+AGG - chr7_1:69738917-69738936 None:intergenic 40.0%
!! GGTTTTAATCTTTCCCGCAA+TGG + chr7_1:69738974-69738993 Msa1034300:CDS 40.0%
! ATAATCGTTTTCGCCATTGC+GGG - chr7_1:69738990-69739009 None:intergenic 40.0%
! GATAATCGTTTTCGCCATTG+CGG - chr7_1:69738991-69739010 None:intergenic 40.0%
! AAAGTGCAGCAAAAGTGTGT+GGG - chr7_1:69739310-69739329 None:intergenic 40.0%
ACCTAAACGCTCTAATTGTC+CGG - chr7_1:69739385-69739404 None:intergenic 40.0%
CATAGTTAAGCAGCAAGTGA+AGG - chr7_1:69739589-69739608 None:intergenic 40.0%
! CTTCACTTGCTGCTTAACTA+TGG + chr7_1:69739587-69739606 Msa1034300:exon 40.0%
TGCATGTTCCAATACTCTCA+CGG + chr7_1:69739681-69739700 Msa1034300:intron 40.0%
!!! GTCGCAAGTTGCTTTTTGAA+GGG + chr7_1:69739707-69739726 Msa1034300:intron 40.0%
!! TGCTTTTTGAAGGGTTTTGG+AGG + chr7_1:69739716-69739735 Msa1034300:intron 40.0%
!!! GCTTTTTGAAGGGTTTTGGA+GGG + chr7_1:69739717-69739736 Msa1034300:intron 40.0%
!!! AGGGCTAAGTTGGTTTTGAA+GGG + chr7_1:69739736-69739755 Msa1034300:intron 40.0%
AAATAGGAAGAGAGGAGTGA+AGG - chr7_1:69739960-69739979 None:intergenic 40.0%
ATGTACCAGACCTTATACTC+TGG - chr7_1:69740118-69740137 None:intergenic 40.0%
TATGTGATACATTGGGGGAT+AGG - chr7_1:69740294-69740313 None:intergenic 40.0%
AAAATCATGTAGTCCAAGGG+AGG + chr7_1:69740350-69740369 Msa1034300:intron 40.0%
! CTTTTGGCAAGTAGTTTAGG+TGG + chr7_1:69740408-69740427 Msa1034300:intron 40.0%
!! ACGTTTGTTGTAGCCAACAA+TGG - chr7_1:69740709-69740728 None:intergenic 40.0%
!! CTTGGTTTTTGTCCCAGATT+GGG + chr7_1:69740759-69740778 Msa1034300:intron 40.0%
TGGTGGCTAATATGACTCTA+TGG + chr7_1:69740787-69740806 Msa1034300:intron 40.0%
AGATTGGGTAAGTGTGGAAT+TGG - chr7_1:69740960-69740979 None:intergenic 40.0%
CAGATCTTTAACCCAGAGAA+AGG - chr7_1:69741153-69741172 None:intergenic 40.0%
TTCAGATAAGCGCAAAGAGA+TGG + chr7_1:69741266-69741285 Msa1034300:intron 40.0%
! GATTTTCTCTCCTCTTCTCA+AGG - chr7_1:69741430-69741449 None:intergenic 40.0%
GGAAAAGGTTAATGCAGACA+TGG - chr7_1:69741547-69741566 None:intergenic 40.0%
TGTTAGTATAAGCGGAGGTA+TGG - chr7_1:69741692-69741711 None:intergenic 40.0%
!! GTATTTCTAGCAGTCTGCAA+CGG + chr7_1:69741867-69741886 Msa1034300:intron 40.0%
! TTTGACGCATTGATACTTGG+TGG + chr7_1:69742076-69742095 Msa1034300:intron 40.0%
TCAGAAACTTCACTTCAGAC+TGG - chr7_1:69742170-69742189 None:intergenic 40.0%
! GTCTGAAGTGAAGTTTCTGA+TGG + chr7_1:69742170-69742189 Msa1034300:intron 40.0%
CTGTTATTGAGGTTTGAACG+TGG + chr7_1:69742475-69742494 Msa1034300:intron 40.0%
GATGAATCTATTGCTCGAAG+AGG + chr7_1:69742599-69742618 Msa1034300:three_prime_UTR 40.0%
TGCTTTAATGCTGCATGTTG+TGG + chr7_1:69742631-69742650 Msa1034300:intron 40.0%
! TGCATGTTGTGGTACCTTTT+GGG + chr7_1:69742642-69742661 Msa1034300:intron 40.0%
AGTCAGCCAAGCTTATCTTA+TGG - chr7_1:69742763-69742782 None:intergenic 40.0%
ATAAGATAAGCTTGGCTGAC+TGG + chr7_1:69742762-69742781 Msa1034300:intron 40.0%
ACGGATAGCATGTCTGAATA+AGG + chr7_1:69742812-69742831 Msa1034300:intron 40.0%
GATAAAGATCCACTCTCAAC+AGG - chr7_1:69742846-69742865 None:intergenic 40.0%
TATCTTCACGTAACGTGACT+AGG + chr7_1:69742862-69742881 Msa1034300:three_prime_UTR 40.0%
CATAGCCAGGAAAAGGATAT+TGG + chr7_1:69742900-69742919 Msa1034300:three_prime_UTR 40.0%
GTCATCAGACTCAGAATCAT+TGG - chr7_1:69743129-69743148 None:intergenic 40.0%
AGTAATATGGTGCGTAAAGG+TGG + chr7_1:69743218-69743237 Msa1034300:three_prime_UTR 40.0%
AAGTTGACGCACATAGTAGT+CGG + chr7_1:69743269-69743288 Msa1034300:three_prime_UTR 40.0%
CCCTGTAAAAACACAAATGC+AGG - chr7_1:69743512-69743531 None:intergenic 40.0%
! TGTTAAAACCTCTTGGCTTG+AGG + chr7_1:69743578-69743597 Msa1034300:three_prime_UTR 40.0%
ACGAAGTGGCAGAAATCATA+AGG - chr7_1:69743932-69743951 None:intergenic 40.0%
! TTGATTATGCTGCTTCTCGT+AGG + chr7_1:69744080-69744099 Msa1034300:three_prime_UTR 40.0%
AAAGAGACGACAAAAGGAGA+TGG + chr7_1:69744141-69744160 Msa1034300:three_prime_UTR 40.0%
TAAGAATGGACGATGACTTG+AGG + chr7_1:69744176-69744195 Msa1034300:three_prime_UTR 40.0%
AAGAATGGACGATGACTTGA+GGG + chr7_1:69744177-69744196 Msa1034300:three_prime_UTR 40.0%
GCAAAGTTAGGTCCTCTTTA+TGG + chr7_1:69744199-69744218 Msa1034300:three_prime_UTR 40.0%
! GGCTTTTGGTATCCATAAAG+AGG - chr7_1:69744214-69744233 None:intergenic 40.0%
! GGCTTATAAGCTTTATGAGG+AGG + chr7_1:69744255-69744274 Msa1034300:three_prime_UTR 40.0%
TGAGGAGGATTGTAAGTCTA+AGG + chr7_1:69744270-69744289 Msa1034300:three_prime_UTR 40.0%
GAGGAGGATTGTAAGTCTAA+GGG + chr7_1:69744271-69744290 Msa1034300:three_prime_UTR 40.0%
CATCTCATGATGCTTAGAGA+TGG - chr7_1:69744305-69744324 None:intergenic 40.0%
CATCTCTAAGCATCATGAGA+TGG + chr7_1:69744303-69744322 Msa1034300:three_prime_UTR 40.0%
GGGATTTAAGAAAGCAATGG+AGG + chr7_1:69744324-69744343 Msa1034300:three_prime_UTR 40.0%
!! AAGAAAGCAATGGAGGCATT+TGG + chr7_1:69744331-69744350 Msa1034300:three_prime_UTR 40.0%
CTTGAATGATCCGGTTAGAA+AGG + chr7_1:69744396-69744415 Msa1034300:three_prime_UTR 40.0%
ACATTGAGAACCACTTCAAG+GGG + chr7_1:69744422-69744441 Msa1034300:three_prime_UTR 40.0%
TCAAAATCATCCCCTTGAAG+TGG - chr7_1:69744435-69744454 None:intergenic 40.0%
! ACTTCAAGGGGATGATTTTG+AGG + chr7_1:69744434-69744453 Msa1034300:three_prime_UTR 40.0%
!!! GGGATGATTTTGAGGTTTTC+TGG + chr7_1:69744442-69744461 Msa1034300:three_prime_UTR 40.0%
ATGAGCCTCCATATTCAAAG+AGG + chr7_1:69744530-69744549 Msa1034300:three_prime_UTR 40.0%
TGAGCCTCCATATTCAAAGA+GGG + chr7_1:69744531-69744550 Msa1034300:three_prime_UTR 40.0%
TAATCAACCTGAAGAACAGG+AGG + chr7_1:69744567-69744586 Msa1034300:three_prime_UTR 40.0%
CTCTTCTTCTCTATCTCTCG+TGG - chr7_1:69738834-69738853 None:intergenic 45.0%
TCCGCCTGACAAATTTGATG+CGG + chr7_1:69738910-69738929 Msa1034300:CDS 45.0%
ACCGCATCAAATTTGTCAGG+CGG - chr7_1:69738914-69738933 None:intergenic 45.0%
CTCAAAGCCGTTGAAGAGAA+TGG + chr7_1:69738935-69738954 Msa1034300:CDS 45.0%
AAAGCCGTTGAAGAGAATGG+CGG + chr7_1:69738938-69738957 Msa1034300:CDS 45.0%
TTGACCGCCATTCTCTTCAA+CGG - chr7_1:69738945-69738964 None:intergenic 45.0%
AATGGCGGTCAAGTTCACAT+CGG + chr7_1:69738953-69738972 Msa1034300:CDS 45.0%
TCCTTCGGCTGTAAGATGAT+TGG + chr7_1:69739141-69739160 Msa1034300:intron 45.0%
ACCAATCATCTTACAGCCGA+AGG - chr7_1:69739145-69739164 None:intergenic 45.0%
GTGGGATCTTTAGACGTGTA+TGG - chr7_1:69739292-69739311 None:intergenic 45.0%
! GAAAGTGCAGCAAAAGTGTG+TGG - chr7_1:69739311-69739330 None:intergenic 45.0%
ACTTTCGCCACGTGATATGA+CGG + chr7_1:69739325-69739344 Msa1034300:intron 45.0%
ACTTCTTCCGTCATATCACG+TGG - chr7_1:69739335-69739354 None:intergenic 45.0%
! ACCGGACAATTAGAGCGTTT+AGG + chr7_1:69739381-69739400 Msa1034300:intron 45.0%
! CAGCAAGTGAAGGCTTGTTT+GGG - chr7_1:69739579-69739598 None:intergenic 45.0%
! CACTTGCTGCTTAACTATGG+AGG + chr7_1:69739590-69739609 Msa1034300:exon 45.0%
GCTGTCAAAATACTTGCCTC+TGG + chr7_1:69739612-69739631 Msa1034300:three_prime_UTR 45.0%
!! TGGCTTTGATGCGGATCAAA+AGG + chr7_1:69739632-69739651 Msa1034300:three_prime_UTR 45.0%
!!! CGTCGCAAGTTGCTTTTTGA+AGG + chr7_1:69739706-69739725 Msa1034300:intron 45.0%
!!! GAGGGCTAAGTTGGTTTTGA+AGG + chr7_1:69739735-69739754 Msa1034300:intron 45.0%
TGTTTGGGCTCCAGAGTATA+AGG + chr7_1:69740105-69740124 Msa1034300:three_prime_UTR 45.0%
!! GCTTGGTTTTTGTCCCAGAT+TGG + chr7_1:69740758-69740777 Msa1034300:intron 45.0%
TTGTCCCAGATTGGGATTTG+TGG + chr7_1:69740767-69740786 Msa1034300:intron 45.0%
TCTCAGAGATTGGGTAAGTG+TGG - chr7_1:69740966-69740985 None:intergenic 45.0%
ACCACGTTATGTCTTGCAGT+GGG + chr7_1:69741029-69741048 Msa1034300:intron 45.0%
! TTATGTCTTGCAGTGGGCTT+TGG + chr7_1:69741035-69741054 Msa1034300:intron 45.0%
GGGTTAAAGATCTGTGTGAC+TGG + chr7_1:69741159-69741178 Msa1034300:three_prime_UTR 45.0%
TGTGTGACTGGAATCCAAAC+AGG + chr7_1:69741171-69741190 Msa1034300:three_prime_UTR 45.0%
TGTGAAAGACACTGAAGCTG+CGG - chr7_1:69741478-69741497 None:intergenic 45.0%
AGTGAACGTCGAGTTTACAC+TGG + chr7_1:69742007-69742026 Msa1034300:intron 45.0%
! CGCTTTGACGCATTGATACT+TGG + chr7_1:69742073-69742092 Msa1034300:intron 45.0%
! AGTGAACCTTTTGTGCAGAC+AGG + chr7_1:69742259-69742278 Msa1034300:intron 45.0%
GTCTTCTATTGCACTGCCTT+AGG + chr7_1:69742339-69742358 Msa1034300:intron 45.0%
!!! GACTGTTTTTACGCTCCTGA+AGG + chr7_1:69742515-69742534 Msa1034300:intron 45.0%
! CTGCATGTTGTGGTACCTTT+TGG + chr7_1:69742641-69742660 Msa1034300:intron 45.0%
ATTTGAATCTGCGGCTCTTG+AGG - chr7_1:69742946-69742965 None:intergenic 45.0%
!!! TATTTTGACTGTGTAGCGGC+AGG - chr7_1:69743005-69743024 None:intergenic 45.0%
! TCATTGCTGGTCTGTAATGG+AGG - chr7_1:69743083-69743102 None:intergenic 45.0%
CTGAGTCTGATGACAATGAC+CGG + chr7_1:69743135-69743154 Msa1034300:three_prime_UTR 45.0%
AATATGGTGCGTAAAGGTGG+AGG + chr7_1:69743221-69743240 Msa1034300:three_prime_UTR 45.0%
AGTTGACGCACATAGTAGTC+GGG + chr7_1:69743270-69743289 Msa1034300:three_prime_UTR 45.0%
!! GTGTTTTTACAGGGAAAGGG+AGG + chr7_1:69743518-69743537 Msa1034300:intron 45.0%
GTAGTGAGAACTGTTGCTCT+AGG + chr7_1:69743543-69743562 Msa1034300:three_prime_UTR 45.0%
ATCACAATCCTCAAGCCAAG+AGG - chr7_1:69743589-69743608 None:intergenic 45.0%
CACTGTACCGTTGTAGAACA+TGG - chr7_1:69743629-69743648 None:intergenic 45.0%
TGGTTCAGGGCAGAAAAAGT+TGG + chr7_1:69743973-69743992 Msa1034300:intron 45.0%
TTCAGGGCAGAAAAAGTTGG+TGG + chr7_1:69743976-69743995 Msa1034300:intron 45.0%
!! TGTTGACTTAGCACAAGTGC+TGG + chr7_1:69744057-69744076 Msa1034300:three_prime_UTR 45.0%
ACGACAAAAGGAGATGGAGA+TGG + chr7_1:69744147-69744166 Msa1034300:three_prime_UTR 45.0%
GATGACTTGAGGGCAAAGTT+AGG + chr7_1:69744187-69744206 Msa1034300:three_prime_UTR 45.0%
TGTGCCCTCTTTGAATATGG+AGG - chr7_1:69744538-69744557 None:intergenic 45.0%
CTCTGTGCCCTCTTTGAATA+TGG - chr7_1:69744541-69744560 None:intergenic 45.0%
! TATTCAAAGAGGGCACAGAG+TGG + chr7_1:69744541-69744560 Msa1034300:three_prime_UTR 45.0%
! GCAGCAAGTGAAGGCTTGTT+TGG - chr7_1:69739580-69739599 None:intergenic 50.0%
!! ACTTGCCTCTGGCTTTGATG+CGG + chr7_1:69739623-69739642 Msa1034300:three_prime_UTR 50.0%
TTGATCCGCATCAAAGCCAG+AGG - chr7_1:69739631-69739650 None:intergenic 50.0%
!!! AGGGTTTTGGAGGGCTAAGT+TGG + chr7_1:69739726-69739745 Msa1034300:intron 50.0%
AGTCCAAGGGAGGAAGATTC+TGG + chr7_1:69740360-69740379 Msa1034300:intron 50.0%
TGACCAGAATCTTCCTCCCT+TGG - chr7_1:69740366-69740385 None:intergenic 50.0%
TCCCAGATTGGGATTTGTGG+TGG + chr7_1:69740770-69740789 Msa1034300:intron 50.0%
GCCACCACAAATCCCAATCT+GGG - chr7_1:69740774-69740793 None:intergenic 50.0%
AGCCACCACAAATCCCAATC+TGG - chr7_1:69740775-69740794 None:intergenic 50.0%
CACCACGTTATGTCTTGCAG+TGG + chr7_1:69741028-69741047 Msa1034300:intron 50.0%
GCAATGCTCAGATGAGCATC+AGG + chr7_1:69741098-69741117 Msa1034300:three_prime_UTR 50.0%
GTGAAAGACACTGAAGCTGC+GGG - chr7_1:69741477-69741496 None:intergenic 50.0%
AGATCCACTCTCAACAGGGT+TGG - chr7_1:69742841-69742860 None:intergenic 50.0%
AGCGCAACATAGCCAGGAAA+AGG + chr7_1:69742893-69742912 Msa1034300:three_prime_UTR 50.0%
!! AGGGCAGAAAAAGTTGGTGG+AGG + chr7_1:69743979-69743998 Msa1034300:intron 50.0%
!! AGTTGGTGGAGGCATCCAAT+AGG + chr7_1:69743990-69744009 Msa1034300:three_prime_UTR 50.0%
TTGAGCACCTCCTGTTCTTC+AGG - chr7_1:69744577-69744596 None:intergenic 50.0%
! GCGGAAATAGGTGTCGCGAT+AGG - chr7_1:69738895-69738914 None:intergenic 55.0%
! GTGAAGGCTTGTTTGGGCAG+AGG - chr7_1:69739573-69739592 None:intergenic 55.0%
GGGCTCCAGAGTATAAGGTC+TGG + chr7_1:69740110-69740129 Msa1034300:intron 55.0%
GCCCACTGCAAGACATAACG+TGG - chr7_1:69741033-69741052 None:intergenic 55.0%
GAGTCCAACCCTGTTGAGAG+TGG + chr7_1:69742834-69742853 Msa1034300:three_prime_UTR 55.0%
CTCAACAGCGCAACATAGCC+AGG + chr7_1:69742887-69742906 Msa1034300:three_prime_UTR 55.0%
! GAGTTTGGAGGGGAGGGTTT+TGG + chr7_1:69743829-69743848 Msa1034300:intron 55.0%
!! TTTGGAGGGGAGGGTTTTGG+AGG + chr7_1:69743832-69743851 Msa1034300:intron 55.0%
!!! TTGGAGGGGAGGGTTTTGGA+GGG + chr7_1:69743833-69743852 Msa1034300:intron 55.0%
GCGCGTTTGCTTCGAGATTG+CGG + chr7_1:69744114-69744133 Msa1034300:three_prime_UTR 55.0%
! GCGACGCACCGTGAGAGTAT+TGG - chr7_1:69739692-69739711 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 69738824 69744749 69738824 ID=Msa1034300;Name=Msa1034300
chr7_1 mRNA 69738824 69744749 69738824 ID=Msa1034300-mRNA-1;Parent=Msa1034300;Name=Msa1034300-mRNA-1;_AED=0.32;_eAED=0.32;_QI=36|0.87|1|1|0.62|0.77|9|1888|81
chr7_1 exon 69738824 69739033 69738824 ID=Msa1034300-mRNA-1:exon:16487;Parent=Msa1034300-mRNA-1
chr7_1 exon 69739532 69739653 69739532 ID=Msa1034300-mRNA-1:exon:16488;Parent=Msa1034300-mRNA-1
chr7_1 exon 69740019 69740126 69740019 ID=Msa1034300-mRNA-1:exon:16489;Parent=Msa1034300-mRNA-1
chr7_1 exon 69741048 69741192 69741048 ID=Msa1034300-mRNA-1:exon:16490;Parent=Msa1034300-mRNA-1
chr7_1 exon 69741271 69741362 69741271 ID=Msa1034300-mRNA-1:exon:16491;Parent=Msa1034300-mRNA-1
chr7_1 exon 69742527 69742620 69742527 ID=Msa1034300-mRNA-1:exon:16492;Parent=Msa1034300-mRNA-1
chr7_1 exon 69742820 69743306 69742820 ID=Msa1034300-mRNA-1:exon:16493;Parent=Msa1034300-mRNA-1
chr7_1 exon 69743530 69743672 69743530 ID=Msa1034300-mRNA-1:exon:16494;Parent=Msa1034300-mRNA-1
chr7_1 exon 69743981 69744749 69743981 ID=Msa1034300-mRNA-1:exon:16495;Parent=Msa1034300-mRNA-1
chr7_1 five_prime_UTR 69738824 69738859 69738824 ID=Msa1034300-mRNA-1:five_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 CDS 69738860 69739033 69738860 ID=Msa1034300-mRNA-1:cds;Parent=Msa1034300-mRNA-1
chr7_1 CDS 69739532 69739603 69739532 ID=Msa1034300-mRNA-1:cds;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69739604 69739653 69739604 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69740019 69740126 69740019 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69741048 69741192 69741048 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69741271 69741362 69741271 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69742527 69742620 69742527 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69742820 69743306 69742820 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69743530 69743672 69743530 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
chr7_1 three_prime_UTR 69743981 69744749 69743981 ID=Msa1034300-mRNA-1:three_prime_utr;Parent=Msa1034300-mRNA-1
Gene Sequence

>Msa1034300

ATGTCGAAGTTATTTGAAGGGTTTAACGTGTTCCTATCGCGACACCTATTTCCGCCTGACAAATTTGATGCGGTTCTCAAAGCCGTTGAAGAGAATGGCGGTCAAGTTCACATCGGTTTTAATCTTTCCCGCAATGGCGAAAACGATTATCATATCATTTCTTGCCGTCAAAACGTTATAGATGTGTTCTTCAATGTGCTAAAGAAGGAAGGCCTCTGCCCAAACAAGCCTTCACTTGCTGCTTAA
Protein sequence

>Msa1034300

MSKLFEGFNVFLSRHLFPPDKFDAVLKAVEENGGQVHIGFNLSRNGENDYHIISCRQNVIDVFFNVLKKEGLCPNKPSLAA*