Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160000 | XP_003625072.1 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.44e-76 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160000 | sp|Q39096|ERD15_ARATH | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.51e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160000 | Q2HRG8 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.87e-77 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1114040 | Msa1160000 | 0.864839 | 9.108477e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160000 | MtrunA17_Chr7g0256851 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.32e-80 | 231 |
| Msa1160000 | MtrunA17_Chr3g0085831 | 50.476 | 105 | 48 | 3 | 1 | 102 | 1 | 104 | 9.21e-30 | 105 |
| Msa1160000 | MtrunA17_Chr5g0437861 | 44.595 | 74 | 37 | 2 | 1 | 71 | 1 | 73 | 1.29e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160000 | AT2G41430.5 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1160000 | AT2G41430.4 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1160000 | AT2G41430.2 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1160000 | AT2G41430.1 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1160000 | AT2G41430.3 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 4.23e-30 | 104 |
| Msa1160000 | AT4G14270.1 | 57.407 | 54 | 23 | 0 | 2 | 55 | 3 | 56 | 2.36e-17 | 72.8 |
| Msa1160000 | AT4G14270.2 | 57.407 | 54 | 23 | 0 | 2 | 55 | 3 | 56 | 2.36e-17 | 72.8 |
Find 41 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGGTAAGAAAGTTTA+TGG | 0.140300 | 7_4:+49739845 | None:intergenic |
| AAGGAATTACCAGAGAAATT+TGG | 0.241148 | 7_4:+49741121 | None:intergenic |
| TTTCTTACCTGTCTTCAAAA+TGG | 0.243639 | 7_4:-49739837 | Msa1160000:three_prime_UTR |
| GTCACCAGCTGCCACCATTC+CGG | 0.246976 | 7_4:+49740509 | None:intergenic |
| TTCAAGATGGCATTAGTTTC+AGG | 0.269984 | 7_4:-49740605 | Msa1160000:exon |
| TTCCTTCTTACCAAAATCTA+TGG | 0.308472 | 7_4:-49739997 | Msa1160000:three_prime_UTR |
| TCACCAGCTGCCACCATTCC+GGG | 0.312874 | 7_4:+49740510 | None:intergenic |
| CTTTCTGTAACTTCTTGTAT+AGG | 0.333956 | 7_4:-49740041 | Msa1160000:three_prime_UTR |
| GGAATGTAAAGTGGTGCATT+AGG | 0.338731 | 7_4:+49740563 | None:intergenic |
| GACGGTCTTGCCTTAGCTTT+CGG | 0.365977 | 7_4:-49740095 | Msa1160000:three_prime_UTR |
| CAAGGAGCAAAGAAATTTAC+TGG | 0.372256 | 7_4:-49740167 | Msa1160000:CDS |
| AGTAAGTTTATTATTACAAT+TGG | 0.386330 | 7_4:+49739718 | None:intergenic |
| TGAAATGGTACCATGATTAC+TGG | 0.394842 | 7_4:-49740481 | Msa1160000:CDS |
| AGCCTTCATCATCATGTTGC+TGG | 0.408811 | 7_4:+49740453 | None:intergenic |
| ACCGTCGCATTCAGCGTCTA+TGG | 0.413218 | 7_4:+49740112 | None:intergenic |
| TTCTGAACATGTATCTTGTA+TGG | 0.421871 | 7_4:+49739753 | None:intergenic |
| GAATGTAAAGTGGTGCATTA+GGG | 0.425842 | 7_4:+49740564 | None:intergenic |
| AGACAGGTAAGAAAGTTTAT+GGG | 0.447864 | 7_4:+49739846 | None:intergenic |
| TCTCGCTAACCAAATTTCTC+TGG | 0.450228 | 7_4:-49741130 | Msa1160000:intron |
| TCGACGTAGCGAAATGCAGC+TGG | 0.454423 | 7_4:+49740542 | None:intergenic |
| TTCCCCGGAATGGTGGCAGC+TGG | 0.476894 | 7_4:-49740513 | Msa1160000:CDS |
| GCATCAAGATCAAACGCATC+AGG | 0.498917 | 7_4:+49740380 | None:intergenic |
| GCTGGCTAAGCCAGTAATCA+TGG | 0.519480 | 7_4:+49740471 | None:intergenic |
| ATTTACTGGATGAGCTAAAG+AGG | 0.519766 | 7_4:-49740153 | Msa1160000:exon |
| TGTAACTTCTTGTATAGGCA+AGG | 0.531546 | 7_4:-49740036 | Msa1160000:three_prime_UTR |
| TGACAGCACTCAGAAGTGTA+TGG | 0.540019 | 7_4:-49739788 | Msa1160000:three_prime_UTR |
| AGCTGGTGACAACACTGAAA+TGG | 0.546239 | 7_4:-49740496 | Msa1160000:CDS |
| GATGATGTAGATGAGTTTGA+CGG | 0.549584 | 7_4:-49740425 | Msa1160000:CDS |
| AGCCAGCAACATGATGATGA+AGG | 0.560493 | 7_4:-49740455 | Msa1160000:CDS |
| AGCTGCATTTCGCTACGTCG+AGG | 0.567649 | 7_4:-49740540 | Msa1160000:CDS |
| AGCTAAATAACCGAAAGCTA+AGG | 0.582950 | 7_4:+49740085 | None:intergenic |
| ACCATAGACGCTGAATGCGA+CGG | 0.583100 | 7_4:-49740113 | Msa1160000:three_prime_UTR |
| AGAGTTTATCAAGTCTTCTG+AGG | 0.595138 | 7_4:-49740324 | Msa1160000:CDS |
| CACCAGCTGCCACCATTCCG+GGG | 0.612813 | 7_4:+49740511 | None:intergenic |
| ATCAAGTCTTCTGAGGCACA+AGG | 0.619098 | 7_4:-49740317 | Msa1160000:intron |
| AGAGTGAAGGTGATTCAAGA+TGG | 0.619356 | 7_4:-49740618 | Msa1160000:exon |
| AAATCTATGGTAAAATAGAG+AGG | 0.627618 | 7_4:-49739984 | Msa1160000:three_prime_UTR |
| AAGATGGCATTAGTTTCAGG+AGG | 0.635369 | 7_4:-49740602 | Msa1160000:CDS |
| TGATGCGTTTGATCTTGATG+CGG | 0.644823 | 7_4:-49740378 | Msa1160000:CDS |
| AATGCAGCTGGAATGTAAAG+TGG | 0.663728 | 7_4:+49740554 | None:intergenic |
| ACAGAAAGTTAAAACTGACA+TGG | 0.696360 | 7_4:+49740056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAGAAAAAAAAAAT+CGG | + | chr7_4:49739849-49739868 | None:intergenic | 10.0% |
| !!! | TGATTAATTATTTTTACAAT+TGG | + | chr7_4:49740009-49740028 | None:intergenic | 10.0% |
| !! | ATTTATGAAATTAATTGAAT+TGG | - | chr7_4:49740087-49740106 | Msa1160000:three_prime_UTR | 10.0% |
| !! | AAGTATAAGAAAAAAAAAAT+CGG | + | chr7_4:49739849-49739868 | None:intergenic | 10.0% |
| !!! | TGATTAATTATTTTTACAAT+TGG | + | chr7_4:49740009-49740028 | None:intergenic | 10.0% |
| !! | ATTTATGAAATTAATTGAAT+TGG | - | chr7_4:49740087-49740106 | Msa1160000:three_prime_UTR | 10.0% |
| !!! | TTGAATTTTTATTTCAGATC+TGG | - | chr7_4:49739935-49739954 | Msa1160000:three_prime_UTR | 20.0% |
| !!! | CATTGTTAATTGTTGATTAA+TGG | - | chr7_4:49740200-49740219 | Msa1160000:intron | 20.0% |
| !!! | TTGAATTTTTATTTCAGATC+TGG | - | chr7_4:49739935-49739954 | Msa1160000:three_prime_UTR | 20.0% |
| !!! | CATTGTTAATTGTTGATTAA+TGG | - | chr7_4:49740200-49740219 | Msa1160000:intron | 20.0% |
| ! | TGAGTAATTGAAAGAGAAAA+AGG | + | chr7_4:49739765-49739784 | None:intergenic | 25.0% |
| ! | TTGATTAATGGTGTAGATTA+AGG | - | chr7_4:49740212-49740231 | Msa1160000:intron | 25.0% |
| !! | AACTTTCCTCTGAAAAATAA+CGG | + | chr7_4:49740669-49740688 | None:intergenic | 25.0% |
| !! | CTCTATTTTACCATAGATTT+TGG | + | chr7_4:49740880-49740899 | None:intergenic | 25.0% |
| ! | AAATCTATGGTAAAATAGAG+AGG | - | chr7_4:49740880-49740899 | Msa1160000:intron | 25.0% |
| ! | TGAGTAATTGAAAGAGAAAA+AGG | + | chr7_4:49739765-49739784 | None:intergenic | 25.0% |
| ! | TTGATTAATGGTGTAGATTA+AGG | - | chr7_4:49740212-49740231 | Msa1160000:intron | 25.0% |
| !! | AACTTTCCTCTGAAAAATAA+CGG | + | chr7_4:49740669-49740688 | None:intergenic | 25.0% |
| !! | CTCTATTTTACCATAGATTT+TGG | + | chr7_4:49740880-49740899 | None:intergenic | 25.0% |
| ! | AAATCTATGGTAAAATAGAG+AGG | - | chr7_4:49740880-49740899 | Msa1160000:intron | 25.0% |
| AAGGAATTACCAGAGAAATT+TGG | + | chr7_4:49739746-49739765 | None:intergenic | 30.0% | |
| !! | CAATTCTCTTTTGACTAGTT+TGG | + | chr7_4:49739912-49739931 | None:intergenic | 30.0% |
| !!! | AACATACCGTTATTTTTCAG+AGG | - | chr7_4:49740660-49740679 | Msa1160000:intron | 30.0% |
| !! | TTTTTCAGAGGAAAGTTTTG+TGG | - | chr7_4:49740672-49740691 | Msa1160000:intron | 30.0% |
| ACAGAAAGTTAAAACTGACA+TGG | + | chr7_4:49740811-49740830 | None:intergenic | 30.0% | |
| CTTTCTGTAACTTCTTGTAT+AGG | - | chr7_4:49740823-49740842 | Msa1160000:intron | 30.0% | |
| TTCCTTCTTACCAAAATCTA+TGG | - | chr7_4:49740867-49740886 | Msa1160000:intron | 30.0% | |
| !! | TACCATAGATTTTGGTAAGA+AGG | + | chr7_4:49740872-49740891 | None:intergenic | 30.0% |
| AGACAGGTAAGAAAGTTTAT+GGG | + | chr7_4:49741021-49741040 | None:intergenic | 30.0% | |
| AAGACAGGTAAGAAAGTTTA+TGG | + | chr7_4:49741022-49741041 | None:intergenic | 30.0% | |
| TTTCTTACCTGTCTTCAAAA+TGG | - | chr7_4:49741027-49741046 | Msa1160000:intron | 30.0% | |
| TTCTGAACATGTATCTTGTA+TGG | + | chr7_4:49741114-49741133 | None:intergenic | 30.0% | |
| AAGGAATTACCAGAGAAATT+TGG | + | chr7_4:49739746-49739765 | None:intergenic | 30.0% | |
| !! | CAATTCTCTTTTGACTAGTT+TGG | + | chr7_4:49739912-49739931 | None:intergenic | 30.0% |
| !!! | AACATACCGTTATTTTTCAG+AGG | - | chr7_4:49740660-49740679 | Msa1160000:intron | 30.0% |
| !! | TTTTTCAGAGGAAAGTTTTG+TGG | - | chr7_4:49740672-49740691 | Msa1160000:intron | 30.0% |
| ACAGAAAGTTAAAACTGACA+TGG | + | chr7_4:49740811-49740830 | None:intergenic | 30.0% | |
| CTTTCTGTAACTTCTTGTAT+AGG | - | chr7_4:49740823-49740842 | Msa1160000:intron | 30.0% | |
| TTCCTTCTTACCAAAATCTA+TGG | - | chr7_4:49740867-49740886 | Msa1160000:intron | 30.0% | |
| !! | TACCATAGATTTTGGTAAGA+AGG | + | chr7_4:49740872-49740891 | None:intergenic | 30.0% |
| AGACAGGTAAGAAAGTTTAT+GGG | + | chr7_4:49741021-49741040 | None:intergenic | 30.0% | |
| AAGACAGGTAAGAAAGTTTA+TGG | + | chr7_4:49741022-49741041 | None:intergenic | 30.0% | |
| TTTCTTACCTGTCTTCAAAA+TGG | - | chr7_4:49741027-49741046 | Msa1160000:intron | 30.0% | |
| TTCTGAACATGTATCTTGTA+TGG | + | chr7_4:49741114-49741133 | None:intergenic | 30.0% | |
| !! | GACTAGTTTGGAATCAAGAT+CGG | + | chr7_4:49739900-49739919 | None:intergenic | 35.0% |
| ! | TTCAAGATGGCATTAGTTTC+AGG | - | chr7_4:49740259-49740278 | Msa1160000:intron | 35.0% |
| GAATGTAAAGTGGTGCATTA+GGG | + | chr7_4:49740303-49740322 | None:intergenic | 35.0% | |
| TGAAATGGTACCATGATTAC+TGG | - | chr7_4:49740383-49740402 | Msa1160000:CDS | 35.0% | |
| GATGATGTAGATGAGTTTGA+CGG | - | chr7_4:49740439-49740458 | Msa1160000:CDS | 35.0% | |
| AGAGTTTATCAAGTCTTCTG+AGG | - | chr7_4:49740540-49740559 | Msa1160000:CDS | 35.0% | |
| CAAGGAGCAAAGAAATTTAC+TGG | - | chr7_4:49740697-49740716 | Msa1160000:intron | 35.0% | |
| ATTTACTGGATGAGCTAAAG+AGG | - | chr7_4:49740711-49740730 | Msa1160000:intron | 35.0% | |
| AGCTAAATAACCGAAAGCTA+AGG | + | chr7_4:49740782-49740801 | None:intergenic | 35.0% | |
| TGTAACTTCTTGTATAGGCA+AGG | - | chr7_4:49740828-49740847 | Msa1160000:intron | 35.0% | |
| !! | AATGCATCCATTTTGAAGAC+AGG | + | chr7_4:49741037-49741056 | None:intergenic | 35.0% |
| !! | GACTAGTTTGGAATCAAGAT+CGG | + | chr7_4:49739900-49739919 | None:intergenic | 35.0% |
| ! | TTCAAGATGGCATTAGTTTC+AGG | - | chr7_4:49740259-49740278 | Msa1160000:intron | 35.0% |
| GAATGTAAAGTGGTGCATTA+GGG | + | chr7_4:49740303-49740322 | None:intergenic | 35.0% | |
| TGAAATGGTACCATGATTAC+TGG | - | chr7_4:49740383-49740402 | Msa1160000:CDS | 35.0% | |
| GATGATGTAGATGAGTTTGA+CGG | - | chr7_4:49740439-49740458 | Msa1160000:CDS | 35.0% | |
| AGAGTTTATCAAGTCTTCTG+AGG | - | chr7_4:49740540-49740559 | Msa1160000:CDS | 35.0% | |
| CAAGGAGCAAAGAAATTTAC+TGG | - | chr7_4:49740697-49740716 | Msa1160000:intron | 35.0% | |
| ATTTACTGGATGAGCTAAAG+AGG | - | chr7_4:49740711-49740730 | Msa1160000:intron | 35.0% | |
| AGCTAAATAACCGAAAGCTA+AGG | + | chr7_4:49740782-49740801 | None:intergenic | 35.0% | |
| TGTAACTTCTTGTATAGGCA+AGG | - | chr7_4:49740828-49740847 | Msa1160000:intron | 35.0% | |
| !! | AATGCATCCATTTTGAAGAC+AGG | + | chr7_4:49741037-49741056 | None:intergenic | 35.0% |
| TCTCGCTAACCAAATTTCTC+TGG | - | chr7_4:49739734-49739753 | Msa1160000:three_prime_UTR | 40.0% | |
| GGAAAAAGTGACAAGAGTGA+AGG | - | chr7_4:49740233-49740252 | Msa1160000:intron | 40.0% | |
| AGAGTGAAGGTGATTCAAGA+TGG | - | chr7_4:49740246-49740265 | Msa1160000:intron | 40.0% | |
| ! | AAGATGGCATTAGTTTCAGG+AGG | - | chr7_4:49740262-49740281 | Msa1160000:intron | 40.0% |
| GGAATGTAAAGTGGTGCATT+AGG | + | chr7_4:49740304-49740323 | None:intergenic | 40.0% | |
| AATGCAGCTGGAATGTAAAG+TGG | + | chr7_4:49740313-49740332 | None:intergenic | 40.0% | |
| TGATGCGTTTGATCTTGATG+CGG | - | chr7_4:49740486-49740505 | Msa1160000:CDS | 40.0% | |
| TCTCGCTAACCAAATTTCTC+TGG | - | chr7_4:49739734-49739753 | Msa1160000:three_prime_UTR | 40.0% | |
| GGAAAAAGTGACAAGAGTGA+AGG | - | chr7_4:49740233-49740252 | Msa1160000:intron | 40.0% | |
| AGAGTGAAGGTGATTCAAGA+TGG | - | chr7_4:49740246-49740265 | Msa1160000:intron | 40.0% | |
| ! | AAGATGGCATTAGTTTCAGG+AGG | - | chr7_4:49740262-49740281 | Msa1160000:intron | 40.0% |
| GGAATGTAAAGTGGTGCATT+AGG | + | chr7_4:49740304-49740323 | None:intergenic | 40.0% | |
| AATGCAGCTGGAATGTAAAG+TGG | + | chr7_4:49740313-49740332 | None:intergenic | 40.0% | |
| TGATGCGTTTGATCTTGATG+CGG | - | chr7_4:49740486-49740505 | Msa1160000:CDS | 40.0% | |
| AGCTGGTGACAACACTGAAA+TGG | - | chr7_4:49740368-49740387 | Msa1160000:CDS | 45.0% | |
| ! | AGCCAGCAACATGATGATGA+AGG | - | chr7_4:49740409-49740428 | Msa1160000:CDS | 45.0% |
| AGCCTTCATCATCATGTTGC+TGG | + | chr7_4:49740414-49740433 | None:intergenic | 45.0% | |
| GCATCAAGATCAAACGCATC+AGG | + | chr7_4:49740487-49740506 | None:intergenic | 45.0% | |
| !! | ATCAAGTCTTCTGAGGCACA+AGG | - | chr7_4:49740547-49740566 | Msa1160000:CDS | 45.0% |
| !! | GAGGAAAGTTTTGTGGAGCA+AGG | - | chr7_4:49740679-49740698 | Msa1160000:intron | 45.0% |
| ! | TGACAGCACTCAGAAGTGTA+TGG | - | chr7_4:49741076-49741095 | Msa1160000:intron | 45.0% |
| AGCTGGTGACAACACTGAAA+TGG | - | chr7_4:49740368-49740387 | Msa1160000:CDS | 45.0% | |
| ! | AGCCAGCAACATGATGATGA+AGG | - | chr7_4:49740409-49740428 | Msa1160000:CDS | 45.0% |
| AGCCTTCATCATCATGTTGC+TGG | + | chr7_4:49740414-49740433 | None:intergenic | 45.0% | |
| GCATCAAGATCAAACGCATC+AGG | + | chr7_4:49740487-49740506 | None:intergenic | 45.0% | |
| !! | ATCAAGTCTTCTGAGGCACA+AGG | - | chr7_4:49740547-49740566 | Msa1160000:CDS | 45.0% |
| !! | GAGGAAAGTTTTGTGGAGCA+AGG | - | chr7_4:49740679-49740698 | Msa1160000:intron | 45.0% |
| ! | TGACAGCACTCAGAAGTGTA+TGG | - | chr7_4:49741076-49741095 | Msa1160000:intron | 45.0% |
| ! | CTACGTCGAGGATTTTTCCC+CGG | - | chr7_4:49740336-49740355 | Msa1160000:CDS | 50.0% |
| ! | TCGAGGATTTTTCCCCGGAA+TGG | - | chr7_4:49740341-49740360 | Msa1160000:CDS | 50.0% |
| ! | AGGATTTTTCCCCGGAATGG+TGG | - | chr7_4:49740344-49740363 | Msa1160000:CDS | 50.0% |
| GCTGGCTAAGCCAGTAATCA+TGG | + | chr7_4:49740396-49740415 | None:intergenic | 50.0% | |
| ACCATAGACGCTGAATGCGA+CGG | - | chr7_4:49740751-49740770 | Msa1160000:intron | 50.0% | |
| ! | GACGGTCTTGCCTTAGCTTT+CGG | - | chr7_4:49740769-49740788 | Msa1160000:intron | 50.0% |
| ! | CTACGTCGAGGATTTTTCCC+CGG | - | chr7_4:49740336-49740355 | Msa1160000:CDS | 50.0% |
| ! | TCGAGGATTTTTCCCCGGAA+TGG | - | chr7_4:49740341-49740360 | Msa1160000:CDS | 50.0% |
| ! | AGGATTTTTCCCCGGAATGG+TGG | - | chr7_4:49740344-49740363 | Msa1160000:CDS | 50.0% |
| GCTGGCTAAGCCAGTAATCA+TGG | + | chr7_4:49740396-49740415 | None:intergenic | 50.0% | |
| ACCATAGACGCTGAATGCGA+CGG | - | chr7_4:49740751-49740770 | Msa1160000:intron | 50.0% | |
| ! | GACGGTCTTGCCTTAGCTTT+CGG | - | chr7_4:49740769-49740788 | Msa1160000:intron | 50.0% |
| TCGACGTAGCGAAATGCAGC+TGG | + | chr7_4:49740325-49740344 | None:intergenic | 55.0% | |
| AGCTGCATTTCGCTACGTCG+AGG | - | chr7_4:49740324-49740343 | Msa1160000:CDS | 55.0% | |
| ACCGTCGCATTCAGCGTCTA+TGG | + | chr7_4:49740755-49740774 | None:intergenic | 55.0% | |
| TCGACGTAGCGAAATGCAGC+TGG | + | chr7_4:49740325-49740344 | None:intergenic | 55.0% | |
| AGCTGCATTTCGCTACGTCG+AGG | - | chr7_4:49740324-49740343 | Msa1160000:CDS | 55.0% | |
| ACCGTCGCATTCAGCGTCTA+TGG | + | chr7_4:49740755-49740774 | None:intergenic | 55.0% | |
| TCACCAGCTGCCACCATTCC+GGG | + | chr7_4:49740357-49740376 | None:intergenic | 60.0% | |
| GTCACCAGCTGCCACCATTC+CGG | + | chr7_4:49740358-49740377 | None:intergenic | 60.0% | |
| TCACCAGCTGCCACCATTCC+GGG | + | chr7_4:49740357-49740376 | None:intergenic | 60.0% | |
| GTCACCAGCTGCCACCATTC+CGG | + | chr7_4:49740358-49740377 | None:intergenic | 60.0% | |
| TTCCCCGGAATGGTGGCAGC+TGG | - | chr7_4:49740351-49740370 | Msa1160000:CDS | 65.0% | |
| CACCAGCTGCCACCATTCCG+GGG | + | chr7_4:49740356-49740375 | None:intergenic | 65.0% | |
| TTCCCCGGAATGGTGGCAGC+TGG | - | chr7_4:49740351-49740370 | Msa1160000:CDS | 65.0% | |
| CACCAGCTGCCACCATTCCG+GGG | + | chr7_4:49740356-49740375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49739720 | 49741166 | 49739720 | ID=Msa1160000;Name=Msa1160000 |
| chr7_4 | mRNA | 49739720 | 49741166 | 49739720 | ID=Msa1160000-mRNA-1;Parent=Msa1160000;Name=Msa1160000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|0.5|0.33|3|443|115 |
| chr7_4 | exon | 49739720 | 49740206 | 49739720 | ID=Msa1160000-mRNA-1:exon:13767;Parent=Msa1160000-mRNA-1 |
| chr7_4 | exon | 49740318 | 49740658 | 49740318 | ID=Msa1160000-mRNA-1:exon:13766;Parent=Msa1160000-mRNA-1 |
| chr7_4 | exon | 49741131 | 49741166 | 49741131 | ID=Msa1160000-mRNA-1:exon:13765;Parent=Msa1160000-mRNA-1 |
| chr7_4 | five_prime_UTR | 49741131 | 49741166 | 49741131 | ID=Msa1160000-mRNA-1:five_prime_utr;Parent=Msa1160000-mRNA-1 |
| chr7_4 | five_prime_UTR | 49740622 | 49740658 | 49740622 | ID=Msa1160000-mRNA-1:five_prime_utr;Parent=Msa1160000-mRNA-1 |
| chr7_4 | CDS | 49740318 | 49740621 | 49740318 | ID=Msa1160000-mRNA-1:cds;Parent=Msa1160000-mRNA-1 |
| chr7_4 | CDS | 49740163 | 49740206 | 49740163 | ID=Msa1160000-mRNA-1:cds;Parent=Msa1160000-mRNA-1 |
| chr7_4 | three_prime_UTR | 49739720 | 49740162 | 49739720 | ID=Msa1160000-mRNA-1:three_prime_utr;Parent=Msa1160000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
