AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 155 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGATGACCTTATCATTTC+TGG 0.104924 7_4:+50220280 Msa1160340:three_prime_UTR
TACCGATACTGTCGAAAATT+TGG 0.129844 7_4:+50219592 Msa1160340:three_prime_UTR
CAAAGAACTTGAAGCTTCTT+TGG 0.134487 7_4:+50215801 Msa1160340:five_prime_UTR
CTTTGCTTCGGTTGTGAAAA+TGG 0.159217 7_4:+50219943 Msa1160340:three_prime_UTR
CAACTTGATAGAAGCAATTT+TGG 0.167888 7_4:-50219630 None:intergenic
AACTGCTGAACCTTGGGGTT+GGG 0.173713 7_4:+50221240 Msa1160340:three_prime_UTR
TGAAATTACCTCCCGGTTTC+AGG 0.188693 7_4:+50220074 Msa1160340:three_prime_UTR
TGCAGCATGTATTGCTTCTA+TGG 0.205988 7_4:-50221116 None:intergenic
CTCACAAATATATATACTTA+TGG 0.229255 7_4:-50221151 None:intergenic
ATCAAGTTCACCATGTAAAA+AGG 0.245252 7_4:-50220038 None:intergenic
TTTGATGCAGAATAGCTATT+TGG 0.255258 7_4:+50218538 Msa1160340:intron
TCAAACGTTCATACTGAAAT+AGG 0.265836 7_4:-50218710 None:intergenic
CACTCTGAAGGAAGGTAATC+TGG 0.290757 7_4:-50215889 None:intergenic
AAGATGATGGTTCTGATCTA+AGG 0.298246 7_4:-50220491 None:intergenic
AGAGGATAAATCTCTATAAA+TGG 0.323519 7_4:+50218291 Msa1160340:exon
AATTGCTTCTATCAAGTTGC+AGG 0.332604 7_4:+50219634 Msa1160340:three_prime_UTR
ATAAATGGCACAGAAAATTA+AGG 0.333731 7_4:+50218306 Msa1160340:exon
GTATGAACGTTTGATGGTTC+AGG 0.334072 7_4:+50218719 Msa1160340:exon
TATTCCAATTGTATCTCCTT+TGG 0.334438 7_4:+50219506 Msa1160340:three_prime_UTR
CTCATTGTAGTTTCAATTGT+AGG 0.337375 7_4:-50219463 None:intergenic
AAAGTGGAAATAGCTGTTAA+AGG 0.340111 7_4:-50215739 None:intergenic
ATTTCAGTATGAACGTTTGA+TGG 0.343025 7_4:+50218713 Msa1160340:exon
ACATGGAACTGCTGAACCTT+GGG 0.343547 7_4:+50221234 Msa1160340:three_prime_UTR
AGAGATTTATCCTCTTGAAT+TGG 0.349477 7_4:-50218283 None:intergenic
ACTTTCTTATTCTGTTCATA+TGG 0.350001 7_4:+50220603 Msa1160340:three_prime_UTR
ATTGAGGCTCTTGTAAATAA+TGG 0.354291 7_4:+50219877 Msa1160340:three_prime_UTR
ACTGCTGAACCTTGGGGTTG+GGG 0.354627 7_4:+50221241 Msa1160340:three_prime_UTR
AATTGAAACTACAATGAGTT+TGG 0.363964 7_4:+50219468 Msa1160340:three_prime_UTR
GAAAATTAAGGCAGGCAATC+AGG 0.364436 7_4:+50218318 Msa1160340:CDS
ACCGATACTGTCGAAAATTT+GGG 0.367071 7_4:+50219593 Msa1160340:three_prime_UTR
GAACTGCTGAACCTTGGGGT+TGG 0.381522 7_4:+50221239 Msa1160340:three_prime_UTR
ACTTGACTAGGCACTCTAAC+TGG 0.400395 7_4:+50220781 Msa1160340:three_prime_UTR
CATATCGAAGCTGGGTTGTT+GGG 0.402320 7_4:+50220448 Msa1160340:three_prime_UTR
TGAACAGAATAAGAAAGTTC+TGG 0.406581 7_4:-50220598 None:intergenic
TGATCTAAGGGAAAATTAAC+AGG 0.407173 7_4:-50220478 None:intergenic
TAGTGATCCGGATTGGAAAC+TGG 0.407536 7_4:-50220532 None:intergenic
TAACAGCAGGTGGCATATCA+TGG 0.413187 7_4:-50219547 None:intergenic
GTTGTATGTGTTAGTTTATG+TGG 0.414087 7_4:+50220261 Msa1160340:three_prime_UTR
AGTATATATATTTGTGAGGT+GGG 0.416189 7_4:+50221156 Msa1160340:three_prime_UTR
TCACAAATATATATACTTAT+GGG 0.416596 7_4:-50221150 None:intergenic
TCGGGAACTCACCTATCTCT+TGG 0.419869 7_4:+50220818 Msa1160340:three_prime_UTR
ATCTCTATACGTCTTGAAAC+AGG 0.422311 7_4:+50220132 Msa1160340:three_prime_UTR
CAGGACATCTACACCAAATC+AGG 0.424348 7_4:+50220093 Msa1160340:three_prime_UTR
GCATTGGAAATTTCACCAAA+TGG 0.432398 7_4:+50220003 Msa1160340:three_prime_UTR
TTATCGTGAAACCTTTGCTT+CGG 0.436925 7_4:+50219931 Msa1160340:three_prime_UTR
TGGTGTAGATGTCCTGAAAC+CGG 0.439241 7_4:-50220086 None:intergenic
TTGGTCTGCTTAACTGTCAC+TGG 0.444571 7_4:+50220574 Msa1160340:three_prime_UTR
TCAGAACCATCATCTTCCTT+TGG 0.444741 7_4:+50220498 Msa1160340:three_prime_UTR
CATCATCTTCCTTTGGCCAC+TGG 0.445427 7_4:+50220505 Msa1160340:three_prime_UTR
GTTGCAATGGCGGACATAGA+AGG 0.447439 7_4:-50218564 None:intergenic
AGATCCAAAGGAGATACAAT+TGG 0.452038 7_4:-50219510 None:intergenic
CGTTGTTGCCAGAAATGATA+AGG 0.456222 7_4:-50220288 None:intergenic
CACATGGAACTGCTGAACCT+TGG 0.460427 7_4:+50221233 Msa1160340:three_prime_UTR
TTCTTATTCTGTTCATATGG+TGG 0.463788 7_4:+50220606 Msa1160340:three_prime_UTR
CGCTATCTCAAGGGAAATCC+CGG 0.464451 7_4:+50220685 Msa1160340:three_prime_UTR
CTCTTGTAAATAATGGCACT+TGG 0.464768 7_4:+50219884 Msa1160340:three_prime_UTR
TCATATCGAAGCTGGGTTGT+TGG 0.465348 7_4:+50220447 Msa1160340:three_prime_UTR
AAGTGGAAATAGCTGTTAAA+GGG 0.466714 7_4:-50215738 None:intergenic
CACATTATACTGCAAGGCAT+TGG 0.468741 7_4:-50218672 None:intergenic
ACTTGATCTCATATCGAAGC+TGG 0.471426 7_4:+50220439 Msa1160340:three_prime_UTR
TTGGTGAAATTTCCAATGCT+TGG 0.473032 7_4:-50219999 None:intergenic
GGAGATACAATTGGAATAGC+AGG 0.479008 7_4:-50219501 None:intergenic
TATTTGTGAGGTGGGGATCA+AGG 0.480469 7_4:+50221164 Msa1160340:three_prime_UTR
GTTGCAATGACGGACATAGA+AGG 0.485188 7_4:-50218598 None:intergenic
TTCTCGGCATTGAGGTAGCT+CGG 0.486283 7_4:+50220378 Msa1160340:three_prime_UTR
AGGCACTGTGAACATCCATT+TGG 0.488127 7_4:-50220018 None:intergenic
CGTATAGAGATTTGCGCAAG+CGG 0.490837 7_4:-50220120 None:intergenic
GATGCAGAATAGCTATTTGG+TGG 0.493646 7_4:+50218541 Msa1160340:intron
CCTCTGCTGAGGCAGAATCT+TGG 0.494529 7_4:+50220872 Msa1160340:three_prime_UTR
TTGGAGAAGAATACCTTGGC+CGG 0.495154 7_4:-50220704 None:intergenic
TGGAATTCCAGTTTCCAATC+CGG 0.496951 7_4:+50220525 Msa1160340:three_prime_UTR
TCGTGTTGTTCGCTATCTCA+AGG 0.497470 7_4:+50220675 Msa1160340:three_prime_UTR
TACTGCTTCGTCACGTCCTG+CGG 0.497560 7_4:+50219703 Msa1160340:three_prime_UTR
TTGACATGAGAGAATTCCAT+TGG 0.499248 7_4:-50220405 None:intergenic
GACAGCTTCAGCTAAGGTTG+AGG 0.502320 7_4:-50219818 None:intergenic
CGAAGCAGTAGAACAATTTG+AGG 0.503860 7_4:-50219690 None:intergenic
AACTCAAAAGCGCTCTGCTA+CGG 0.508730 7_4:+50220176 Msa1160340:three_prime_UTR
TAGAAGACTAGTAGGTCGTT+TGG 0.513566 7_4:+50220555 Msa1160340:three_prime_UTR
CTGCTGAACCTTGGGGTTGG+GGG 0.518899 7_4:+50221242 Msa1160340:three_prime_UTR
ACTAGTCTTCTATAGTGATC+CGG 0.519526 7_4:-50220544 None:intergenic
GGACAAGTTGCCACTTGACT+AGG 0.520098 7_4:+50220769 Msa1160340:three_prime_UTR
ACAGTAAGAATGTTTCTCGC+TGG 0.520531 7_4:+50219907 Msa1160340:three_prime_UTR
TTTGAAGATCACAATCAGCT+TGG 0.521582 7_4:-50220723 None:intergenic
GACTAGGCACTCTAACTGGA+TGG 0.521716 7_4:+50220785 Msa1160340:three_prime_UTR
TGTCATGCAGCTGGAAATTG+AGG 0.522505 7_4:+50219861 Msa1160340:three_prime_UTR
AAATTTATGCCTGTGTGACT+CGG 0.527660 7_4:+50220743 Msa1160340:three_prime_UTR
TATGCCTGTGTGACTCGGAT+TGG 0.529171 7_4:+50220748 Msa1160340:three_prime_UTR
AACCTTAGCTGAAGCTGTCA+AGG 0.530835 7_4:+50219822 Msa1160340:three_prime_UTR
AGCTGTTAAAGGGAGCGGTT+CGG 0.531683 7_4:-50215728 None:intergenic
AACAGCAGGTGGCATATCAT+GGG 0.533367 7_4:-50219546 None:intergenic
TCTTCTATAGTGATCCGGAT+TGG 0.534462 7_4:-50220539 None:intergenic
TGGAGAAGAATACCTTGGCC+GGG 0.535740 7_4:-50220703 None:intergenic
GCTTTGTAAAACTGTGAAAG+TGG 0.538687 7_4:-50215755 None:intergenic
ATCCTTGACAGCTTCAGCTA+AGG 0.540620 7_4:-50219824 None:intergenic
GCATATCTTAGAGATGGTAT+TGG 0.542046 7_4:-50219666 None:intergenic
GAGGCAGAATCTTGGCATGA+AGG 0.542685 7_4:+50220880 Msa1160340:three_prime_UTR
ACTGCTTCGTCACGTCCTGC+GGG 0.544126 7_4:+50219704 Msa1160340:three_prime_UTR
CAAGACAACTTGTTGCATGT+TGG 0.547469 7_4:-50220845 None:intergenic
TAAGGCAGGCAATCAGGCTA+AGG 0.548461 7_4:+50218324 Msa1160340:CDS
TTGTTTACCTTGCACTCTGA+AGG 0.549553 7_4:-50215901 None:intergenic
AGATGATGGTTCTGATCTAA+GGG 0.550459 7_4:-50220490 None:intergenic
CTGTTGCTGCTACCAAGCAT+TGG 0.553859 7_4:+50219987 Msa1160340:three_prime_UTR
AACATAACTCTATGCTTGAA+TGG 0.556096 7_4:+50218618 Msa1160340:CDS
CTCAAGGGAAATCCCGGCCA+AGG 0.556535 7_4:+50220691 Msa1160340:three_prime_UTR
ATGGTGAATTGTCATGCAGC+TGG 0.557079 7_4:+50219852 Msa1160340:three_prime_UTR
TTACCTTCCTTCAGAGTGCA+AGG 0.559788 7_4:+50215894 Msa1160340:five_prime_UTR
TGAAACAGGCACCTCGATGT+TGG 0.560240 7_4:+50220146 Msa1160340:three_prime_UTR
GCGTTCTAGTGCTCTTCTAG+AGG 0.567374 7_4:-50220646 None:intergenic
GATCACTATAGAAGACTAGT+AGG 0.567578 7_4:+50220547 Msa1160340:three_prime_UTR
GGTGTAGATGTCCTGAAACC+GGG 0.567800 7_4:-50220085 None:intergenic
ATAGAGTTATGTTGCAATGA+CGG 0.570494 7_4:-50218608 None:intergenic
GGCATAGAGTTATGTTGCAA+TGG 0.572768 7_4:-50218577 None:intergenic
CGTGTTGTTCGCTATCTCAA+GGG 0.572877 7_4:+50220676 Msa1160340:three_prime_UTR
ACTCTGAAGGAAGGTAATCT+GGG 0.574191 7_4:-50215888 None:intergenic
ATGAAAGCATGTGCTCAAGT+AGG 0.574772 7_4:-50220327 None:intergenic
CTTGATCTCATATCGAAGCT+GGG 0.575266 7_4:+50220440 Msa1160340:three_prime_UTR
TTACCTTGCACTCTGAAGGA+AGG 0.577378 7_4:-50215897 None:intergenic
TGTCTTGCGTTCCTCTGCTG+AGG 0.578261 7_4:+50220861 Msa1160340:three_prime_UTR
GAAGCAGTAGAACAATTTGA+GGG 0.578294 7_4:-50219689 None:intergenic
GACAGTCAGTCCAATTCAAG+AGG 0.581737 7_4:+50218273 Msa1160340:intron
GCAGCATGTATTGCTTCTAT+GGG 0.582248 7_4:-50221115 None:intergenic
TGAGGGGCATATCTTAGAGA+TGG 0.583149 7_4:-50219672 None:intergenic
CACTCTCACATTATACTGCA+AGG 0.583183 7_4:-50218678 None:intergenic
CTCATGTGAAGAAGATCCAA+AGG 0.584080 7_4:-50219522 None:intergenic
CAGTGGCCAAAGGAAGATGA+TGG 0.586428 7_4:-50220504 None:intergenic
AAGTATATATATTTGTGAGG+TGG 0.588341 7_4:+50221155 Msa1160340:three_prime_UTR
TACACATTACACATTGCACA+TGG 0.590207 7_4:+50221217 Msa1160340:three_prime_UTR
AGTTAGAGTGCCTAGTCAAG+TGG 0.590900 7_4:-50220779 None:intergenic
ATGGCACAGAAAATTAAGGC+AGG 0.593953 7_4:+50218310 Msa1160340:CDS
GAAAGTGAAAATGTTGTATG+TGG 0.594724 7_4:-50215850 None:intergenic
GAGGTAGCTCGGAATGCCAA+TGG 0.597811 7_4:+50220389 Msa1160340:three_prime_UTR
GAAGCAATACATGCTGCAGA+TGG 0.598657 7_4:+50221121 Msa1160340:three_prime_UTR
GAAATAGCTGTTAAAGGGAG+CGG 0.598774 7_4:-50215733 None:intergenic
CAGCTTGGAGAAGAATACCT+TGG 0.603159 7_4:-50220708 None:intergenic
ACTAGGCACTCTAACTGGAT+GGG 0.607942 7_4:+50220786 Msa1160340:three_prime_UTR
AACGTTCATACTGAAATAGG+TGG 0.613062 7_4:-50218707 None:intergenic
GTATATATATTTGTGAGGTG+GGG 0.619111 7_4:+50221157 Msa1160340:three_prime_UTR
ACTGGAATTCCAGTGGCCAA+AGG 0.624998 7_4:-50220514 None:intergenic
ATAGAGTTATGTTGCAATGG+CGG 0.628455 7_4:-50218574 None:intergenic
CCAAGATTCTGCCTCAGCAG+AGG 0.629953 7_4:-50220872 None:intergenic
CATGGAACTGCTGAACCTTG+GGG 0.630810 7_4:+50221235 Msa1160340:three_prime_UTR
CATAAGTATATATATTTGTG+AGG 0.633246 7_4:+50221152 Msa1160340:three_prime_UTR
GTATATATGAAATTACCTCC+CGG 0.636083 7_4:+50220067 Msa1160340:three_prime_UTR
TTGTCCAATCCGAGTCACAC+AGG 0.644821 7_4:-50220752 None:intergenic
GCTGCATGACAATTCACCAT+CGG 0.652563 7_4:-50219849 None:intergenic
ACTGTCGAAAATTTGGGACG+TGG 0.655059 7_4:+50219599 Msa1160340:three_prime_UTR
ATTGGAAACTGGAATTCCAG+TGG 0.659775 7_4:-50220521 None:intergenic
AAGCTGTCAAGGATATCCGA+TGG 0.660825 7_4:+50219833 Msa1160340:three_prime_UTR
GATACAATTGGAATAGCAGG+TGG 0.673598 7_4:-50219498 None:intergenic
CTTGGCATGAAGGTTCGACA+AGG 0.675901 7_4:+50220890 Msa1160340:three_prime_UTR
AAGTGTGAATCTTGACACGA+AGG 0.678143 7_4:+50218348 Msa1160340:CDS
CTTGCAGTATAATGTGAGAG+TGG 0.694938 7_4:+50218679 Msa1160340:CDS
AAGCAGTAGAACAATTTGAG+GGG 0.710286 7_4:-50219688 None:intergenic
AGTTTGGAAAACCAACATCG+AGG 0.720511 7_4:-50220157 None:intergenic
GTAGATGTCCTGAAACCGGG+AGG 0.744447 7_4:-50220082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCATTTTATCAATTTTTT+AGG + chr7_4:50215978-50215997 Msa1160340:intron 10.0%
!!! TTCATTTTATCAATTTTTTA+GGG + chr7_4:50215979-50215998 Msa1160340:intron 10.0%
!! TTGATATACATAAAAAAAAA+AGG + chr7_4:50216091-50216110 Msa1160340:intron 10.0%
!!! TTTCATTTTATCAATTTTTT+AGG + chr7_4:50215978-50215997 Msa1160340:intron 10.0%
!!! TTCATTTTATCAATTTTTTA+GGG + chr7_4:50215979-50215998 Msa1160340:intron 10.0%
!!! ATAACATTTTATTTCAATAT+CGG + chr7_4:50218444-50218463 Msa1160340:intron 10.0%
!!! TTTTTTTTATGTATATCAAC+TGG - chr7_4:50216090-50216109 None:intergenic 15.0%
!! ATACATAAAAAAAAAAGGTT+TGG + chr7_4:50216096-50216115 Msa1160340:intron 15.0%
!! TACATAAAAAAAAAAGGTTT+GGG + chr7_4:50216097-50216116 Msa1160340:intron 15.0%
!!! TTTTTTTTATGTATATCAAC+TGG - chr7_4:50216090-50216109 None:intergenic 15.0%
!! GTTGATATACATAAAAAAAA+AGG + chr7_4:50216090-50216109 Msa1160340:intron 15.0%
!! TATACATAAAAAAAAAGGTT+TGG + chr7_4:50216327-50216346 Msa1160340:intron 15.0%
!! ATACATAAAAAAAAAGGTTT+GGG + chr7_4:50216328-50216347 Msa1160340:intron 15.0%
!! AATTATCACTAAAATCATAA+AGG - chr7_4:50218180-50218199 None:intergenic 15.0%
!! AATAATATCATGAAGATATT+AGG + chr7_4:50218936-50218955 Msa1160340:intron 15.0%
!! ATAATATCATGAAGATATTA+GGG + chr7_4:50218937-50218956 Msa1160340:intron 15.0%
!!! ACATAATAAAAAGTATGTAA+AGG - chr7_4:50220990-50221009 None:intergenic 15.0%
!! TGTTTATAAAAATATTTGAG+TGG + chr7_4:50221007-50221026 Msa1160340:intron 15.0%
!! TCACAAATATATATACTTAT+GGG - chr7_4:50221153-50221172 None:intergenic 15.0%
!!! ACACAACATTATATTTTGAA+TGG - chr7_4:50215933-50215952 None:intergenic 20.0%
!!! AACAAGTGTTATTTTTTTAG+AGG - chr7_4:50216049-50216068 None:intergenic 20.0%
!!! ACTTGTTTATGATTTTTGTT+TGG + chr7_4:50216062-50216081 Msa1160340:intron 20.0%
!!! CTTGTTTATGATTTTTGTTT+GGG + chr7_4:50216063-50216082 Msa1160340:intron 20.0%
!!! TTGTTTATGATTTTTGTTTG+GGG + chr7_4:50216064-50216083 Msa1160340:intron 20.0%
!!! AACAAGTGTTATTTTTTTAG+AGG - chr7_4:50216049-50216068 None:intergenic 20.0%
!!! ACTTGTTTATGATTTTTGTT+TGG + chr7_4:50216062-50216081 Msa1160340:intron 20.0%
!!! CTTGTTTATGATTTTTGTTT+GGG + chr7_4:50216063-50216082 Msa1160340:intron 20.0%
!!! TTGTTTATGATTTTTGTTTG+GGG + chr7_4:50216064-50216083 Msa1160340:intron 20.0%
!!! CAAGTGTTATTTTTTTTCTA+AGG - chr7_4:50216509-50216528 None:intergenic 20.0%
!!! ACTTGTTTATGATTTTTGTT+TGG + chr7_4:50216062-50216081 Msa1160340:intron 20.0%
!!! CTTGTTTATGATTTTTGTTT+GGG + chr7_4:50216063-50216082 Msa1160340:intron 20.0%
!!! TTGTTTATGATTTTTGTTTG+GGG + chr7_4:50216064-50216083 Msa1160340:intron 20.0%
!!! TTTTTTTGATGTATATCAAC+TGG - chr7_4:50216552-50216571 None:intergenic 20.0%
!! GTTGATATACATCAAAAAAA+AGG + chr7_4:50216552-50216571 Msa1160340:intron 20.0%
!! TATACATCAAAAAAAAGGTT+TGG + chr7_4:50216557-50216576 Msa1160340:intron 20.0%
!! ATACATCAAAAAAAAGGTTT+GGG + chr7_4:50216558-50216577 Msa1160340:intron 20.0%
!!! ACTTGTTTATGATTTTTGTT+TGG + chr7_4:50216062-50216081 Msa1160340:intron 20.0%
!!! CTTGTTTATGATTTTTGTTT+GGG + chr7_4:50216063-50216082 Msa1160340:intron 20.0%
!!! TTGTTTATGATTTTTGTTTG+GGG + chr7_4:50216064-50216083 Msa1160340:intron 20.0%
!!! TTTTTTTGATGTATATCAAC+TGG - chr7_4:50216552-50216571 None:intergenic 20.0%
!! GTTGATATACATCAAAAAAA+AGG + chr7_4:50216552-50216571 Msa1160340:intron 20.0%
!! TATACATCAAAAAAAAGGTT+TGG + chr7_4:50216557-50216576 Msa1160340:intron 20.0%
!! ATACATCAAAAAAAAGGTTT+GGG + chr7_4:50216558-50216577 Msa1160340:intron 20.0%
!!! TCAAGTTTATGATTTTTGTT+TGG + chr7_4:50216850-50216869 Msa1160340:intron 20.0%
!!! CAAGTTTATGATTTTTGTTT+GGG + chr7_4:50216851-50216870 Msa1160340:intron 20.0%
!!! AAGTTTATGATTTTTGTTTG+GGG + chr7_4:50216852-50216871 Msa1160340:intron 20.0%
!!! TTTTTTTGATGTATATCAAC+TGG - chr7_4:50216552-50216571 None:intergenic 20.0%
!! GTTGATATACATCAAAAAAA+AGG + chr7_4:50216552-50216571 Msa1160340:intron 20.0%
!! TATACATCAAAAAAAAGGTT+TGG + chr7_4:50216557-50216576 Msa1160340:intron 20.0%
!! ATACATCAAAAAAAAGGTTT+GGG + chr7_4:50216558-50216577 Msa1160340:intron 20.0%
!!! ATAAGCTTTTTCAATCTAAT+TGG + chr7_4:50217491-50217510 Msa1160340:intron 20.0%
!!! TTTTAAGTAGAAAACTAATC+AGG - chr7_4:50217576-50217595 None:intergenic 20.0%
!!! TTAGTTTTCTACTTAAAAAC+AGG + chr7_4:50217578-50217597 Msa1160340:intron 20.0%
!! TAACTTTATTGTTTGAGTAT+TGG + chr7_4:50217643-50217662 Msa1160340:intron 20.0%
!! CATTCATGAAATATTTCAAA+TGG - chr7_4:50217735-50217754 None:intergenic 20.0%
!!! CATTTGAAATATTTCATGAA+TGG + chr7_4:50217733-50217752 Msa1160340:intron 20.0%
!!! AATCTCAACATTTTAACAAA+AGG + chr7_4:50218038-50218057 Msa1160340:intron 20.0%
!!! AAAAGGTATACTATAATTCA+AGG + chr7_4:50218055-50218074 Msa1160340:intron 20.0%
!!! ACCATTTTCTAGTTATTATA+TGG + chr7_4:50218231-50218250 Msa1160340:intron 20.0%
!! TCCATATAATAACTAGAAAA+TGG - chr7_4:50218235-50218254 None:intergenic 20.0%
!!! TAAATACACATTTTCAAAGA+GGG - chr7_4:50218841-50218860 None:intergenic 20.0%
!! TTGAAAATGTGTATTTACAT+TGG + chr7_4:50218844-50218863 Msa1160340:intron 20.0%
!! ATGATATTATTCGCAATTAA+TGG - chr7_4:50218927-50218946 None:intergenic 20.0%
!! TAATATCATGAAGATATTAG+GGG + chr7_4:50218938-50218957 Msa1160340:intron 20.0%
!! ATAATTCACATATTTGGATA+GGG - chr7_4:50219741-50219760 None:intergenic 20.0%
!! TAAAAAAAGCAAACTAATGA+GGG - chr7_4:50221092-50221111 None:intergenic 20.0%
!! ATAAAAAAAGCAAACTAATG+AGG - chr7_4:50221093-50221112 None:intergenic 20.0%
!! CTCACAAATATATATACTTA+TGG - chr7_4:50221154-50221173 None:intergenic 20.0%
!! CATAAGTATATATATTTGTG+AGG + chr7_4:50221152-50221171 Msa1160340:three_prime_UTR 20.0%
!!! TTCAAAAAGAAACTTTTTCT+TGG + chr7_4:50221279-50221298 Msa1160340:three_prime_UTR 20.0%
!!! TCAAAAAGAAACTTTTTCTT+GGG + chr7_4:50221280-50221299 Msa1160340:three_prime_UTR 20.0%
!! TTTGGATCATTCTAAAAAGT+TGG + chr7_4:50215819-50215838 Msa1160340:five_prime_UTR 25.0%
!! TTGGATCATTCTAAAAAGTT+GGG + chr7_4:50215820-50215839 Msa1160340:five_prime_UTR 25.0%
!!! TATTTTTTTTCTAAGGAGAC+AGG - chr7_4:50216502-50216521 None:intergenic 25.0%
!!! ACTTTGTTTTAAAGCTGAAA+GGG - chr7_4:50217426-50217445 None:intergenic 25.0%
!!! AACTTTGTTTTAAAGCTGAA+AGG - chr7_4:50217427-50217446 None:intergenic 25.0%
! GATGTTAATATCTTAACAAC+TGG + chr7_4:50217513-50217532 Msa1160340:intron 25.0%
!! TTATCTAGAATTTAGGACTA+GGG + chr7_4:50217709-50217728 Msa1160340:intron 25.0%
!! TAATCTGTCTTACTATTTTG+TGG + chr7_4:50217789-50217808 Msa1160340:intron 25.0%
!!! TCTTTTACGAACTTTGAAAA+TGG - chr7_4:50217852-50217871 None:intergenic 25.0%
! AGAGGATAAATCTCTATAAA+TGG + chr7_4:50218291-50218310 Msa1160340:exon 25.0%
! ATAAATGGCACAGAAAATTA+AGG + chr7_4:50218306-50218325 Msa1160340:exon 25.0%
!!! TAGATAGATTTTGAAGCATT+TGG + chr7_4:50218777-50218796 Msa1160340:intron 25.0%
!! GTAAATACACATTTTCAAAG+AGG - chr7_4:50218842-50218861 None:intergenic 25.0%
! AATGTGTATTTACATTGGAT+TGG + chr7_4:50218849-50218868 Msa1160340:intron 25.0%
! ACAACAATGAAACGATAATA+AGG - chr7_4:50218880-50218899 None:intergenic 25.0%
! GTTTCATTGTTGTAATTCTT+AGG + chr7_4:50218887-50218906 Msa1160340:intron 25.0%
! AAGTTGAAAATGTGTATTTG+TGG + chr7_4:50219252-50219271 Msa1160340:intron 25.0%
! AGTTGAAAATGTGTATTTGT+GGG + chr7_4:50219253-50219272 Msa1160340:intron 25.0%
! TTCAACAATATCATTGAAAG+AGG - chr7_4:50219422-50219441 None:intergenic 25.0%
! TCTTTCAATGATATTGTTGA+AGG + chr7_4:50219421-50219440 Msa1160340:intron 25.0%
! AATTGAAACTACAATGAGTT+TGG + chr7_4:50219468-50219487 Msa1160340:three_prime_UTR 25.0%
! TAATTCACATATTTGGATAG+GGG - chr7_4:50219740-50219759 None:intergenic 25.0%
! CATAATTCACATATTTGGAT+AGG - chr7_4:50219742-50219761 None:intergenic 25.0%
! GTTAGCATAATTCACATATT+TGG - chr7_4:50219747-50219766 None:intergenic 25.0%
! TGCTTTCATATGAAAAATCT+TGG + chr7_4:50220341-50220360 Msa1160340:three_prime_UTR 25.0%
!!! TGCCGAGAAAATATTTTAAA+GGG - chr7_4:50220367-50220386 None:intergenic 25.0%
!!! ATGCCGAGAAAATATTTTAA+AGG - chr7_4:50220368-50220387 None:intergenic 25.0%
! ACTTTCTTATTCTGTTCATA+TGG + chr7_4:50220603-50220622 Msa1160340:three_prime_UTR 25.0%
!! TAGAGGTTTTTGCATAAATT+GGG - chr7_4:50220632-50220651 None:intergenic 25.0%
!! AGTATGTAAAGGAAATTTTC+TGG - chr7_4:50220979-50220998 None:intergenic 25.0%
! AAGTATATATATTTGTGAGG+TGG + chr7_4:50221155-50221174 Msa1160340:three_prime_UTR 25.0%
! AGTATATATATTTGTGAGGT+GGG + chr7_4:50221156-50221175 Msa1160340:three_prime_UTR 25.0%
AAGTGGAAATAGCTGTTAAA+GGG - chr7_4:50215741-50215760 None:intergenic 30.0%
AAAGTGGAAATAGCTGTTAA+AGG - chr7_4:50215742-50215761 None:intergenic 30.0%
! TGGATCATTCTAAAAAGTTG+GGG + chr7_4:50215821-50215840 Msa1160340:five_prime_UTR 30.0%
GAAAGTGAAAATGTTGTATG+TGG - chr7_4:50215853-50215872 None:intergenic 30.0%
!!! AATTTTTTAGGGTGTGACAA+AGG + chr7_4:50215990-50216009 Msa1160340:intron 30.0%
!!! ATTTTTTAGGGTGTGACAAA+GGG + chr7_4:50215991-50216010 Msa1160340:intron 30.0%
!!! AATTTTTTAGGGTGTGACAA+AGG + chr7_4:50215990-50216009 Msa1160340:intron 30.0%
!!! ATTTTTTAGGGTGTGACAAA+GGG + chr7_4:50215991-50216010 Msa1160340:intron 30.0%
!! ATTTCTATTTCTAAGGAGAC+AGG - chr7_4:50217213-50217232 None:intergenic 30.0%
CTCCTTAGAAATAGAAATCA+AGG + chr7_4:50217215-50217234 Msa1160340:intron 30.0%
!! GTCCTTGATTTCTATTTCTA+AGG - chr7_4:50217220-50217239 None:intergenic 30.0%
!! TTTTCTTGTTTCAAACGATG+TGG + chr7_4:50217325-50217344 Msa1160340:intron 30.0%
! TTTCTTGTTTCAAACGATGT+GGG + chr7_4:50217326-50217345 Msa1160340:intron 30.0%
!! AAAAACTTGTTTCTGTTGTG+TGG + chr7_4:50217352-50217371 Msa1160340:intron 30.0%
ATACACAAATCAGAATGTGA+TGG + chr7_4:50217602-50217621 Msa1160340:intron 30.0%
CTAGTCCTAAATTCTAGATA+AGG - chr7_4:50217710-50217729 None:intergenic 30.0%
! CTTATCTAGAATTTAGGACT+AGG + chr7_4:50217708-50217727 Msa1160340:intron 30.0%
ACAATCAAAGACATCATTTC+CGG - chr7_4:50217881-50217900 None:intergenic 30.0%
! CATGTTTTCTTCTTCAACAT+GGG - chr7_4:50217909-50217928 None:intergenic 30.0%
! ACATGTTTTCTTCTTCAACA+TGG - chr7_4:50217910-50217929 None:intergenic 30.0%
! AACAGTTTTTGTAGAAGAAG+AGG + chr7_4:50217931-50217950 Msa1160340:intron 30.0%
ATAAGCCTATTGTGTTGAAA+GGG - chr7_4:50218010-50218029 None:intergenic 30.0%
AATAAGCCTATTGTGTTGAA+AGG - chr7_4:50218011-50218030 None:intergenic 30.0%
ATACATAACGTAGAATGTGA+TGG + chr7_4:50218145-50218164 Msa1160340:intron 30.0%
AGAGATTTATCCTCTTGAAT+TGG - chr7_4:50218286-50218305 None:intergenic 30.0%
TTTGATGCAGAATAGCTATT+TGG + chr7_4:50218538-50218557 Msa1160340:intron 30.0%
ATAGAGTTATGTTGCAATGA+CGG - chr7_4:50218611-50218630 None:intergenic 30.0%
AACATAACTCTATGCTTGAA+TGG + chr7_4:50218618-50218637 Msa1160340:CDS 30.0%
TCAAACGTTCATACTGAAAT+AGG - chr7_4:50218713-50218732 None:intergenic 30.0%
ATTTCAGTATGAACGTTTGA+TGG + chr7_4:50218713-50218732 Msa1160340:exon 30.0%
TGTGCTAAATATATTTGCCT+TGG + chr7_4:50218753-50218772 Msa1160340:intron 30.0%
CTTCAAAATCTATCTAACCA+AGG - chr7_4:50218773-50218792 None:intergenic 30.0%
CTCATTGTAGTTTCAATTGT+AGG - chr7_4:50219466-50219485 None:intergenic 30.0%
TATTCCAATTGTATCTCCTT+TGG + chr7_4:50219506-50219525 Msa1160340:three_prime_UTR 30.0%
! CAACTTGATAGAAGCAATTT+TGG - chr7_4:50219633-50219652 None:intergenic 30.0%
ATTGAGGCTCTTGTAAATAA+TGG + chr7_4:50219877-50219896 Msa1160340:three_prime_UTR 30.0%
ATCAAGTTCACCATGTAAAA+AGG - chr7_4:50220041-50220060 None:intergenic 30.0%
GTATATATGAAATTACCTCC+CGG + chr7_4:50220067-50220086 Msa1160340:three_prime_UTR 30.0%
! GTTGTATGTGTTAGTTTATG+TGG + chr7_4:50220261-50220280 Msa1160340:three_prime_UTR 30.0%
!!! GGCCCTTTAAAATATTTTCT+CGG + chr7_4:50220362-50220381 Msa1160340:three_prime_UTR 30.0%
! AAAATATTTTCTCGGCATTG+AGG + chr7_4:50220370-50220389 Msa1160340:three_prime_UTR 30.0%
TGATCTAAGGGAAAATTAAC+AGG - chr7_4:50220481-50220500 None:intergenic 30.0%
TGAACAGAATAAGAAAGTTC+TGG - chr7_4:50220601-50220620 None:intergenic 30.0%
TTCTTATTCTGTTCATATGG+TGG + chr7_4:50220606-50220625 Msa1160340:three_prime_UTR 30.0%
! CTAGAGGTTTTTGCATAAAT+TGG - chr7_4:50220633-50220652 None:intergenic 30.0%
!!! TGCTATTGTTATTTTGCTGT+TGG + chr7_4:50221051-50221070 Msa1160340:intron 30.0%
GTATATATATTTGTGAGGTG+GGG + chr7_4:50221157-50221176 Msa1160340:three_prime_UTR 30.0%
GCTTTGTAAAACTGTGAAAG+TGG - chr7_4:50215758-50215777 None:intergenic 35.0%
! CACAGTTTTACAAAGCACAA+AGG + chr7_4:50215762-50215781 Msa1160340:five_prime_UTR 35.0%
CAAAGAACTTGAAGCTTCTT+TGG + chr7_4:50215801-50215820 Msa1160340:five_prime_UTR 35.0%
TTGAACAGGATCTGTTCTAT+AGG - chr7_4:50217256-50217275 None:intergenic 35.0%
! AGGCACCTTATCTAGAATTT+AGG + chr7_4:50217702-50217721 Msa1160340:intron 35.0%
AGTTCGTAAAAGATTGTTGC+CGG + chr7_4:50217859-50217878 Msa1160340:intron 35.0%
! TTTTGTAGAAGAAGAGGAAC+TGG + chr7_4:50217937-50217956 Msa1160340:intron 35.0%
TTAAGCCCTTTCAACACAAT+AGG + chr7_4:50218002-50218021 Msa1160340:intron 35.0%
GATGGAGCAATAACAAAACT+TGG - chr7_4:50218403-50218422 None:intergenic 35.0%
!! TCAATCAAGTGTTGAAGTGA+GGG - chr7_4:50218425-50218444 None:intergenic 35.0%
!! ATCAATCAAGTGTTGAAGTG+AGG - chr7_4:50218426-50218445 None:intergenic 35.0%
ATAGAGTTATGTTGCAATGG+CGG - chr7_4:50218577-50218596 None:intergenic 35.0%
AACGTTCATACTGAAATAGG+TGG - chr7_4:50218710-50218729 None:intergenic 35.0%
! GAAAAAGCAGCTGAATTTTC+TGG - chr7_4:50218817-50218836 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr7_4:50219034-50219053 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr7_4:50219033-50219052 Msa1160340:intron 35.0%
ATCATACATAATCCATCCCA+TGG - chr7_4:50219293-50219312 None:intergenic 35.0%
!! GGGATGGATTATGTATGATT+TGG + chr7_4:50219294-50219313 Msa1160340:intron 35.0%
AAATGGAAATTCCTTTCGAC+AGG - chr7_4:50219356-50219375 None:intergenic 35.0%
GATGAAATTTCTGCTGCAAA+TGG - chr7_4:50219373-50219392 None:intergenic 35.0%
!! ATATCATTGAAAGAGGCATC+AGG - chr7_4:50219415-50219434 None:intergenic 35.0%
AGATCCAAAGGAGATACAAT+TGG - chr7_4:50219513-50219532 None:intergenic 35.0%
!!! TCATCACTGATTTTAACAGC+AGG - chr7_4:50219563-50219582 None:intergenic 35.0%
TACCGATACTGTCGAAAATT+TGG + chr7_4:50219592-50219611 Msa1160340:three_prime_UTR 35.0%
ACCGATACTGTCGAAAATTT+GGG + chr7_4:50219593-50219612 Msa1160340:three_prime_UTR 35.0%
! TCCCAAATTTTCGACAGTAT+CGG - chr7_4:50219597-50219616 None:intergenic 35.0%
! AATTGCTTCTATCAAGTTGC+AGG + chr7_4:50219634-50219653 Msa1160340:three_prime_UTR 35.0%
GCATATCTTAGAGATGGTAT+TGG - chr7_4:50219669-50219688 None:intergenic 35.0%
AAGCAGTAGAACAATTTGAG+GGG - chr7_4:50219691-50219710 None:intergenic 35.0%
GAAGCAGTAGAACAATTTGA+GGG - chr7_4:50219692-50219711 None:intergenic 35.0%
ACATATTTGGATAGGGGATA+GGG - chr7_4:50219734-50219753 None:intergenic 35.0%
GCTAAAAAATGCATGTGTTG+TGG - chr7_4:50219776-50219795 None:intergenic 35.0%
CTCTTGTAAATAATGGCACT+TGG + chr7_4:50219884-50219903 Msa1160340:three_prime_UTR 35.0%
TTATCGTGAAACCTTTGCTT+CGG + chr7_4:50219931-50219950 Msa1160340:three_prime_UTR 35.0%
TTGGTGAAATTTCCAATGCT+TGG - chr7_4:50220002-50220021 None:intergenic 35.0%
GCATTGGAAATTTCACCAAA+TGG + chr7_4:50220003-50220022 Msa1160340:three_prime_UTR 35.0%
ATCTCTATACGTCTTGAAAC+AGG + chr7_4:50220132-50220151 Msa1160340:three_prime_UTR 35.0%
TTGACATGAGAGAATTCCAT+TGG - chr7_4:50220408-50220427 None:intergenic 35.0%
!! AGATGATGGTTCTGATCTAA+GGG - chr7_4:50220493-50220512 None:intergenic 35.0%
!! AAGATGATGGTTCTGATCTA+AGG - chr7_4:50220494-50220513 None:intergenic 35.0%
!! ACTAGTCTTCTATAGTGATC+CGG - chr7_4:50220547-50220566 None:intergenic 35.0%
GATCACTATAGAAGACTAGT+AGG + chr7_4:50220547-50220566 Msa1160340:three_prime_UTR 35.0%
AAATTTATGCCTGTGTGACT+CGG + chr7_4:50220743-50220762 Msa1160340:three_prime_UTR 35.0%
!!! ATGTTGGTTTTCCAAGAGAT+AGG - chr7_4:50220832-50220851 None:intergenic 35.0%
ATAACAATAGCAAAGTCAGC+AGG - chr7_4:50221043-50221062 None:intergenic 35.0%
!!! ATTGTTATTTTGCTGTTGGC+AGG + chr7_4:50221055-50221074 Msa1160340:intron 35.0%
!!! TTGTTATTTTGCTGTTGGCA+GGG + chr7_4:50221056-50221075 Msa1160340:intron 35.0%
TACACATTACACATTGCACA+TGG + chr7_4:50221217-50221236 Msa1160340:three_prime_UTR 35.0%
GAAATAGCTGTTAAAGGGAG+CGG - chr7_4:50215736-50215755 None:intergenic 40.0%
! ACTCTGAAGGAAGGTAATCT+GGG - chr7_4:50215891-50215910 None:intergenic 40.0%
TTGTTTACCTTGCACTCTGA+AGG - chr7_4:50215904-50215923 None:intergenic 40.0%
GAACAGATCCTGTTCAAGTA+AGG + chr7_4:50217259-50217278 Msa1160340:intron 40.0%
ATGGCACAGAAAATTAAGGC+AGG + chr7_4:50218310-50218329 Msa1160340:CDS 40.0%
GAAAATTAAGGCAGGCAATC+AGG + chr7_4:50218318-50218337 Msa1160340:CDS 40.0%
AAGTGTGAATCTTGACACGA+AGG + chr7_4:50218348-50218367 Msa1160340:CDS 40.0%
! TGCTCATGTTTCGAGTAACT+TGG + chr7_4:50218487-50218506 Msa1160340:intron 40.0%
GATGCAGAATAGCTATTTGG+TGG + chr7_4:50218541-50218560 Msa1160340:intron 40.0%
GGCATAGAGTTATGTTGCAA+TGG - chr7_4:50218580-50218599 None:intergenic 40.0%
CACATTATACTGCAAGGCAT+TGG - chr7_4:50218675-50218694 None:intergenic 40.0%
CACTCTCACATTATACTGCA+AGG - chr7_4:50218681-50218700 None:intergenic 40.0%
CTTGCAGTATAATGTGAGAG+TGG + chr7_4:50218679-50218698 Msa1160340:CDS 40.0%
! GTATGAACGTTTGATGGTTC+AGG + chr7_4:50218719-50218738 Msa1160340:exon 40.0%
!!! GCAGCTGAATTTTCTGGTTA+AGG - chr7_4:50218811-50218830 None:intergenic 40.0%
GAAGATATTAGGGGTAACCT+TGG + chr7_4:50218947-50218966 Msa1160340:intron 40.0%
ATTGTTGTCATGTGACCGTA+AGG + chr7_4:50218983-50219002 Msa1160340:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr7_4:50219027-50219046 Msa1160340:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr7_4:50219028-50219047 Msa1160340:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr7_4:50219059-50219078 Msa1160340:intron 40.0%
!! AGATGTTGTTTCCTGTCGAA+AGG + chr7_4:50219342-50219361 Msa1160340:intron 40.0%
GATACAATTGGAATAGCAGG+TGG - chr7_4:50219501-50219520 None:intergenic 40.0%
GGAGATACAATTGGAATAGC+AGG - chr7_4:50219504-50219523 None:intergenic 40.0%
CTCATGTGAAGAAGATCCAA+AGG - chr7_4:50219525-50219544 None:intergenic 40.0%
!!! TCACTGATTTTAACAGCAGG+TGG - chr7_4:50219560-50219579 None:intergenic 40.0%
!!! TTTTCGACAGTATCGGTAAC+AGG - chr7_4:50219590-50219609 None:intergenic 40.0%
CGAAGCAGTAGAACAATTTG+AGG - chr7_4:50219693-50219712 None:intergenic 40.0%
CACATATTTGGATAGGGGAT+AGG - chr7_4:50219735-50219754 None:intergenic 40.0%
TTCTGTAGCTGCAGAAATAG+CGG - chr7_4:50219798-50219817 None:intergenic 40.0%
ACAGTAAGAATGTTTCTCGC+TGG + chr7_4:50219907-50219926 Msa1160340:three_prime_UTR 40.0%
! CATTTTCACAACCGAAGCAA+AGG - chr7_4:50219945-50219964 None:intergenic 40.0%
CTTTGCTTCGGTTGTGAAAA+TGG + chr7_4:50219943-50219962 Msa1160340:three_prime_UTR 40.0%
! GTTCACAGTGCCTTTTTACA+TGG + chr7_4:50220028-50220047 Msa1160340:three_prime_UTR 40.0%
AGTTTGGAAAACCAACATCG+AGG - chr7_4:50220160-50220179 None:intergenic 40.0%
GTGGATGACCTTATCATTTC+TGG + chr7_4:50220280-50220299 Msa1160340:three_prime_UTR 40.0%
CGTTGTTGCCAGAAATGATA+AGG - chr7_4:50220291-50220310 None:intergenic 40.0%
! ATGAAAGCATGTGCTCAAGT+AGG - chr7_4:50220330-50220349 None:intergenic 40.0%
ACTTGATCTCATATCGAAGC+TGG + chr7_4:50220439-50220458 Msa1160340:three_prime_UTR 40.0%
CTTGATCTCATATCGAAGCT+GGG + chr7_4:50220440-50220459 Msa1160340:three_prime_UTR 40.0%
TCAGAACCATCATCTTCCTT+TGG + chr7_4:50220498-50220517 Msa1160340:three_prime_UTR 40.0%
ATTGGAAACTGGAATTCCAG+TGG - chr7_4:50220524-50220543 None:intergenic 40.0%
TGGAATTCCAGTTTCCAATC+CGG + chr7_4:50220525-50220544 Msa1160340:three_prime_UTR 40.0%
TCTTCTATAGTGATCCGGAT+TGG - chr7_4:50220542-50220561 None:intergenic 40.0%
TAGAAGACTAGTAGGTCGTT+TGG + chr7_4:50220555-50220574 Msa1160340:three_prime_UTR 40.0%
!!! ACTGGATGGGTTGTTTTTCT+CGG + chr7_4:50220799-50220818 Msa1160340:three_prime_UTR 40.0%
!! CAAGACAACTTGTTGCATGT+TGG - chr7_4:50220848-50220867 None:intergenic 40.0%
GCAGCATGTATTGCTTCTAT+GGG - chr7_4:50221118-50221137 None:intergenic 40.0%
TGCAGCATGTATTGCTTCTA+TGG - chr7_4:50221119-50221138 None:intergenic 40.0%
! CACTCTGAAGGAAGGTAATC+TGG - chr7_4:50215892-50215911 None:intergenic 45.0%
TTACCTTCCTTCAGAGTGCA+AGG + chr7_4:50215894-50215913 Msa1160340:five_prime_UTR 45.0%
! TTACCTTGCACTCTGAAGGA+AGG - chr7_4:50215900-50215919 None:intergenic 45.0%
TTCTCAGACACACGTTGTCT+GGG - chr7_4:50216147-50216166 None:intergenic 45.0%
TTCTCAGACACACGTTGTCT+GGG - chr7_4:50216147-50216166 None:intergenic 45.0%
TGCGATCAGAGCGTGATTAA+CGG - chr7_4:50216449-50216468 None:intergenic 45.0%
TTAATCACGCTCTGATCGCA+CGG + chr7_4:50216449-50216468 Msa1160340:intron 45.0%
TTCTCAGACACACGTTGTCT+GGG - chr7_4:50216147-50216166 None:intergenic 45.0%
TTCTCAGACACACGTTGTCT+GGG - chr7_4:50216147-50216166 None:intergenic 45.0%
TTCTCAGACACACGTTGTCT+GGG - chr7_4:50216147-50216166 None:intergenic 45.0%
TGCGATCAGAGCGTGATTAA+CGG - chr7_4:50216449-50216468 None:intergenic 45.0%
TTAATCACGCTCTGATCGCA+CGG + chr7_4:50216449-50216468 Msa1160340:intron 45.0%
TGCGATCAGAGCGTGATTAA+CGG - chr7_4:50216449-50216468 None:intergenic 45.0%
TTAATCACGCTCTGATCGCA+CGG + chr7_4:50216449-50216468 Msa1160340:intron 45.0%
ATAAGACACGCGTGAAGCAT+TGG - chr7_4:50217291-50217310 None:intergenic 45.0%
TGCAAGCATGACAATCTGAG+AGG + chr7_4:50217677-50217696 Msa1160340:intron 45.0%
GACAGTCAGTCCAATTCAAG+AGG + chr7_4:50218273-50218292 Msa1160340:intron 45.0%
CTTGACACGAAGGTTAGACA+AGG + chr7_4:50218358-50218377 Msa1160340:intron 45.0%
!! TCAAGTGTTGAAGTGAGGGA+TGG - chr7_4:50218421-50218440 None:intergenic 45.0%
!! GTTGCAATGACGGACATAGA+AGG - chr7_4:50218601-50218620 None:intergenic 45.0%
! CAATTTTACCAGTTGCGCCA+AGG - chr7_4:50218967-50218986 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr7_4:50219023-50219042 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr7_4:50219055-50219074 Msa1160340:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr7_4:50219058-50219077 Msa1160340:intron 45.0%
AGACATCCAATGTGTACAGC+AGG - chr7_4:50219184-50219203 None:intergenic 45.0%
! GTATTTGTGGGCTATGCCTA+TGG + chr7_4:50219265-50219284 Msa1160340:intron 45.0%
AACAGCAGGTGGCATATCAT+GGG - chr7_4:50219549-50219568 None:intergenic 45.0%
TAACAGCAGGTGGCATATCA+TGG - chr7_4:50219550-50219569 None:intergenic 45.0%
! ACTGTCGAAAATTTGGGACG+TGG + chr7_4:50219599-50219618 Msa1160340:three_prime_UTR 45.0%
! TGAGGGGCATATCTTAGAGA+TGG - chr7_4:50219675-50219694 None:intergenic 45.0%
AACCTTAGCTGAAGCTGTCA+AGG + chr7_4:50219822-50219841 Msa1160340:three_prime_UTR 45.0%
ATCCTTGACAGCTTCAGCTA+AGG - chr7_4:50219827-50219846 None:intergenic 45.0%
AAGCTGTCAAGGATATCCGA+TGG + chr7_4:50219833-50219852 Msa1160340:three_prime_UTR 45.0%
GCTGCATGACAATTCACCAT+CGG - chr7_4:50219852-50219871 None:intergenic 45.0%
ATGGTGAATTGTCATGCAGC+TGG + chr7_4:50219852-50219871 Msa1160340:three_prime_UTR 45.0%
TGTCATGCAGCTGGAAATTG+AGG + chr7_4:50219861-50219880 Msa1160340:three_prime_UTR 45.0%
! AGGCACTGTGAACATCCATT+TGG - chr7_4:50220021-50220040 None:intergenic 45.0%
TGAAATTACCTCCCGGTTTC+AGG + chr7_4:50220074-50220093 Msa1160340:three_prime_UTR 45.0%
TGGTGTAGATGTCCTGAAAC+CGG - chr7_4:50220089-50220108 None:intergenic 45.0%
CAGGACATCTACACCAAATC+AGG + chr7_4:50220093-50220112 Msa1160340:three_prime_UTR 45.0%
CGTATAGAGATTTGCGCAAG+CGG - chr7_4:50220123-50220142 None:intergenic 45.0%
!!! TAGCAGAGCGCTTTTGAGTT+TGG - chr7_4:50220176-50220195 None:intergenic 45.0%
!! AACTCAAAAGCGCTCTGCTA+CGG + chr7_4:50220176-50220195 Msa1160340:three_prime_UTR 45.0%
TCATATCGAAGCTGGGTTGT+TGG + chr7_4:50220447-50220466 Msa1160340:three_prime_UTR 45.0%
CATATCGAAGCTGGGTTGTT+GGG + chr7_4:50220448-50220467 Msa1160340:three_prime_UTR 45.0%
! TAGTGATCCGGATTGGAAAC+TGG - chr7_4:50220535-50220554 None:intergenic 45.0%
TTGGTCTGCTTAACTGTCAC+TGG + chr7_4:50220574-50220593 Msa1160340:three_prime_UTR 45.0%
! TCGTGTTGTTCGCTATCTCA+AGG + chr7_4:50220675-50220694 Msa1160340:three_prime_UTR 45.0%
! CGTGTTGTTCGCTATCTCAA+GGG + chr7_4:50220676-50220695 Msa1160340:three_prime_UTR 45.0%
! AGTTAGAGTGCCTAGTCAAG+TGG - chr7_4:50220782-50220801 None:intergenic 45.0%
ACTTGACTAGGCACTCTAAC+TGG + chr7_4:50220781-50220800 Msa1160340:three_prime_UTR 45.0%
ACTAGGCACTCTAACTGGAT+GGG + chr7_4:50220786-50220805 Msa1160340:three_prime_UTR 45.0%
!!! CTGGATGGGTTGTTTTTCTC+GGG + chr7_4:50220800-50220819 Msa1160340:three_prime_UTR 45.0%
GAAGCAATACATGCTGCAGA+TGG + chr7_4:50221121-50221140 Msa1160340:three_prime_UTR 45.0%
TATTTGTGAGGTGGGGATCA+AGG + chr7_4:50221164-50221183 Msa1160340:three_prime_UTR 45.0%
ACATGGAACTGCTGAACCTT+GGG + chr7_4:50221234-50221253 Msa1160340:three_prime_UTR 45.0%
AGCTGTTAAAGGGAGCGGTT+CGG - chr7_4:50215731-50215750 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG - chr7_4:50216146-50216165 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG - chr7_4:50216148-50216167 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG - chr7_4:50216146-50216165 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG - chr7_4:50216148-50216167 None:intergenic 50.0%
AGGAGACAGGAACATACGTC+TGG - chr7_4:50216489-50216508 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG - chr7_4:50216146-50216165 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG - chr7_4:50216148-50216167 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG - chr7_4:50216146-50216165 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG - chr7_4:50216148-50216167 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG - chr7_4:50216146-50216165 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG - chr7_4:50216148-50216167 None:intergenic 50.0%
TTCTCAGACACACGTCTGTC+TGG - chr7_4:50217065-50217084 None:intergenic 50.0%
GGAACATACGTCTGTCTGGA+TGG - chr7_4:50217192-50217211 None:intergenic 50.0%
GACAGGAACATACGTCTGTC+TGG - chr7_4:50217196-50217215 None:intergenic 50.0%
GGTCACGACCTTACTTGAAC+AGG - chr7_4:50217270-50217289 None:intergenic 50.0%
GCATGACAATCTGAGAGGCA+AGG + chr7_4:50217682-50217701 Msa1160340:intron 50.0%
TAAGGCAGGCAATCAGGCTA+AGG + chr7_4:50218324-50218343 Msa1160340:CDS 50.0%
!! GTTGCAATGGCGGACATAGA+AGG - chr7_4:50218567-50218586 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG + chr7_4:50218989-50219008 Msa1160340:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG + chr7_4:50218990-50219009 Msa1160340:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG - chr7_4:50219001-50219020 None:intergenic 50.0%
CTGAAACTCCCGCATATGCA+GGG - chr7_4:50219098-50219117 None:intergenic 50.0%
ACTGAAACTCCCGCATATGC+AGG - chr7_4:50219099-50219118 None:intergenic 50.0%
ATGCCACCTGCTGTACACAT+TGG + chr7_4:50219175-50219194 Msa1160340:intron 50.0%
CATCCAATGTGTACAGCAGG+TGG - chr7_4:50219181-50219200 None:intergenic 50.0%
!! AATCCATCCCATGGTGCCAT+AGG - chr7_4:50219284-50219303 None:intergenic 50.0%
GACAGCTTCAGCTAAGGTTG+AGG - chr7_4:50219821-50219840 None:intergenic 50.0%
CTGTTGCTGCTACCAAGCAT+TGG + chr7_4:50219987-50220006 Msa1160340:three_prime_UTR 50.0%
GGTGTAGATGTCCTGAAACC+GGG - chr7_4:50220088-50220107 None:intergenic 50.0%
TGAAACAGGCACCTCGATGT+TGG + chr7_4:50220146-50220165 Msa1160340:three_prime_UTR 50.0%
! TTCTCGGCATTGAGGTAGCT+CGG + chr7_4:50220378-50220397 Msa1160340:three_prime_UTR 50.0%
CAGTGGCCAAAGGAAGATGA+TGG - chr7_4:50220507-50220526 None:intergenic 50.0%
CATCATCTTCCTTTGGCCAC+TGG + chr7_4:50220505-50220524 Msa1160340:three_prime_UTR 50.0%
ACTGGAATTCCAGTGGCCAA+AGG - chr7_4:50220517-50220536 None:intergenic 50.0%
GCGTTCTAGTGCTCTTCTAG+AGG - chr7_4:50220649-50220668 None:intergenic 50.0%
CGCTATCTCAAGGGAAATCC+CGG + chr7_4:50220685-50220704 Msa1160340:three_prime_UTR 50.0%
! TATGCCTGTGTGACTCGGAT+TGG + chr7_4:50220748-50220767 Msa1160340:three_prime_UTR 50.0%
TTGTCCAATCCGAGTCACAC+AGG - chr7_4:50220755-50220774 None:intergenic 50.0%
! GGACAAGTTGCCACTTGACT+AGG + chr7_4:50220769-50220788 Msa1160340:three_prime_UTR 50.0%
GACTAGGCACTCTAACTGGA+TGG + chr7_4:50220785-50220804 Msa1160340:three_prime_UTR 50.0%
TCGGGAACTCACCTATCTCT+TGG + chr7_4:50220818-50220837 Msa1160340:three_prime_UTR 50.0%
GAGGCAGAATCTTGGCATGA+AGG + chr7_4:50220880-50220899 Msa1160340:three_prime_UTR 50.0%
CTTGGCATGAAGGTTCGACA+AGG + chr7_4:50220890-50220909 Msa1160340:three_prime_UTR 50.0%
CACATGGAACTGCTGAACCT+TGG + chr7_4:50221233-50221252 Msa1160340:three_prime_UTR 50.0%
CATGGAACTGCTGAACCTTG+GGG + chr7_4:50221235-50221254 Msa1160340:three_prime_UTR 50.0%
AACTGCTGAACCTTGGGGTT+GGG + chr7_4:50221240-50221259 Msa1160340:three_prime_UTR 50.0%
CAGACACACGTCTGTCTGGA+TGG - chr7_4:50217061-50217080 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr7_4:50219002-50219021 Msa1160340:intron 55.0%
CATATGCAGGGTTCCGGAAG+GGG - chr7_4:50219086-50219105 None:intergenic 55.0%
GCATATGCAGGGTTCCGGAA+GGG - chr7_4:50219087-50219106 None:intergenic 55.0%
CTTCCGGAACCCTGCATATG+CGG + chr7_4:50219086-50219105 Msa1160340:intron 55.0%
TTCCGGAACCCTGCATATGC+GGG + chr7_4:50219087-50219106 Msa1160340:intron 55.0%
GGCTATGCCTATGGCACCAT+GGG + chr7_4:50219274-50219293 Msa1160340:intron 55.0%
ATGCCTATGGCACCATGGGA+TGG + chr7_4:50219278-50219297 Msa1160340:intron 55.0%
TACTGCTTCGTCACGTCCTG+CGG + chr7_4:50219703-50219722 Msa1160340:three_prime_UTR 55.0%
GTAGATGTCCTGAAACCGGG+AGG - chr7_4:50220085-50220104 None:intergenic 55.0%
GAGGTAGCTCGGAATGCCAA+TGG + chr7_4:50220389-50220408 Msa1160340:three_prime_UTR 55.0%
TGTCTTGCGTTCCTCTGCTG+AGG + chr7_4:50220861-50220880 Msa1160340:three_prime_UTR 55.0%
CCAAGATTCTGCCTCAGCAG+AGG - chr7_4:50220875-50220894 None:intergenic 55.0%
CCTCTGCTGAGGCAGAATCT+TGG + chr7_4:50220872-50220891 Msa1160340:three_prime_UTR 55.0%
GAACTGCTGAACCTTGGGGT+TGG + chr7_4:50221239-50221258 Msa1160340:three_prime_UTR 55.0%
ACTGCTGAACCTTGGGGTTG+GGG + chr7_4:50221241-50221260 Msa1160340:three_prime_UTR 55.0%
CAGACACACGTTGTCTGGGG+TGG - chr7_4:50216143-50216162 None:intergenic 60.0%
CAGACACACGTTGTCTGGGG+TGG - chr7_4:50216143-50216162 None:intergenic 60.0%
CAGACACACGTTGTCTGGGG+TGG - chr7_4:50216143-50216162 None:intergenic 60.0%
CAGACACACGTTGTCTGGGG+TGG - chr7_4:50216143-50216162 None:intergenic 60.0%
CAGACACACGTTGTCTGGGG+TGG - chr7_4:50216143-50216162 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr7_4:50218956-50218975 Msa1160340:intron 60.0%
! CCAAATGGTGGGACCCCTTC+CGG + chr7_4:50219070-50219089 Msa1160340:intron 60.0%
CGCATATGCAGGGTTCCGGA+AGG - chr7_4:50219088-50219107 None:intergenic 60.0%
CTCCCGCATATGCAGGGTTC+CGG - chr7_4:50219092-50219111 None:intergenic 60.0%
GGGCTATGCCTATGGCACCA+TGG + chr7_4:50219273-50219292 Msa1160340:intron 60.0%
ACTGCTTCGTCACGTCCTGC+GGG + chr7_4:50219704-50219723 Msa1160340:three_prime_UTR 60.0%
CGCAAGCGGCATGCCTGATT+TGG - chr7_4:50220109-50220128 None:intergenic 60.0%
CTCAAGGGAAATCCCGGCCA+AGG + chr7_4:50220691-50220710 Msa1160340:three_prime_UTR 60.0%
CTGCTGAACCTTGGGGTTGG+GGG + chr7_4:50221242-50221261 Msa1160340:three_prime_UTR 60.0%
! CGTTGTCTGGGGTGGTCGCA+CGG - chr7_4:50216135-50216154 None:intergenic 65.0%
! CGTTGTCTGGGGTGGTCGCA+CGG - chr7_4:50216135-50216154 None:intergenic 65.0%
! CGTTGTCTGGGGTGGTCGCA+CGG - chr7_4:50216135-50216154 None:intergenic 65.0%
! CGTTGTCTGGGGTGGTCGCA+CGG - chr7_4:50216135-50216154 None:intergenic 65.0%
CCGGAAGGGGTCCCACCATT+TGG - chr7_4:50219073-50219092 None:intergenic 65.0%
AGGGGATAGGGTGTACCCGC+AGG - chr7_4:50219722-50219741 None:intergenic 65.0%
AACAAGCGCCCCCAACCCCA+AGG - chr7_4:50221253-50221272 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 50215725 50221317 50215725 ID=Msa1160340;Name=Msa1160340
chr7_4 mRNA 50215725 50221317 50215725 ID=Msa1160340-mRNA-1;Parent=Msa1160340;Name=Msa1160340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=223|0.8|1|1|0.2|0|6|1628|78
chr7_4 exon 50215725 50215915 50215725 ID=Msa1160340-mRNA-1:exon:13915;Parent=Msa1160340-mRNA-1
chr7_4 exon 50218278 50218369 50218278 ID=Msa1160340-mRNA-1:exon:13916;Parent=Msa1160340-mRNA-1
chr7_4 exon 50218548 50218740 50218548 ID=Msa1160340-mRNA-1:exon:13917;Parent=Msa1160340-mRNA-1
chr7_4 exon 50219457 50219725 50219457 ID=Msa1160340-mRNA-1:exon:13918;Parent=Msa1160340-mRNA-1
chr7_4 exon 50219810 50220911 50219810 ID=Msa1160340-mRNA-1:exon:13919;Parent=Msa1160340-mRNA-1
chr7_4 exon 50221077 50221317 50221077 ID=Msa1160340-mRNA-1:exon:13920;Parent=Msa1160340-mRNA-1
chr7_4 five_prime_UTR 50215725 50215915 50215725 ID=Msa1160340-mRNA-1:five_prime_utr;Parent=Msa1160340-mRNA-1
chr7_4 five_prime_UTR 50218278 50218309 50218278 ID=Msa1160340-mRNA-1:five_prime_utr;Parent=Msa1160340-mRNA-1
chr7_4 CDS 50218310 50218369 50218310 ID=Msa1160340-mRNA-1:cds;Parent=Msa1160340-mRNA-1
chr7_4 CDS 50218548 50218724 50218548 ID=Msa1160340-mRNA-1:cds;Parent=Msa1160340-mRNA-1
chr7_4 three_prime_UTR 50218725 50218740 50218725 ID=Msa1160340-mRNA-1:three_prime_utr;Parent=Msa1160340-mRNA-1
chr7_4 three_prime_UTR 50219457 50219725 50219457 ID=Msa1160340-mRNA-1:three_prime_utr;Parent=Msa1160340-mRNA-1
chr7_4 three_prime_UTR 50219810 50220911 50219810 ID=Msa1160340-mRNA-1:three_prime_utr;Parent=Msa1160340-mRNA-1
chr7_4 three_prime_UTR 50221077 50221317 50221077 ID=Msa1160340-mRNA-1:three_prime_utr;Parent=Msa1160340-mRNA-1
Gene Sequence

>Msa1160340

ATGGCACAGAAAATTAAGGCAGGCAATCAGGCTAAGGAAAGTGTGAATCTTGACACGAAGAATAGCTATTTGGTGGCCTTCTATGTCCGCCATTGCAACATAACTCTATGCCTTCTATGTCCGTCATTGCAACATAACTCTATGCTTGAATGGTGTAGCTTGCTACTGAAACGCTCTCATGTCTCCAATGCCTTGCAGTATAATGTGAGAGTGGCATATCCACCTATTTCAGTATGA
Protein sequence

>Msa1160340

MAQKIKAGNQAKESVNLDTKNSYLVAFYVRHCNITLCLLCPSLQHNSMLEWCSLLLKRSHVSNALQYNVRVAYPPISV*