AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 156 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGATGACCTTATCATTTC+TGG 0.104924 7_2:-70963487 Msa1073430:three_prime_UTR
CTAGAGGTATTTGCATAAAT+TGG 0.110428 7_2:+70963137 None:intergenic
TACCGATACTGTCGAAAATT+TGG 0.129844 7_2:-70964175 Msa1073430:three_prime_UTR
CAAAGAACTTGAAGCTTCTT+TGG 0.134487 7_2:-70967056 Msa1073430:CDS
CTTTGCTTCGGTTGTGAAAA+TGG 0.159217 7_2:-70963824 Msa1073430:three_prime_UTR
CAACTTGATAGAAGCAATTT+TGG 0.167888 7_2:+70964137 None:intergenic
AACTGCTGAACCTTGGGGTT+GGG 0.173713 7_2:-70962528 Msa1073430:three_prime_UTR
CTGCAGCATGTATGCTTCTA+TGG 0.184833 7_2:+70962652 None:intergenic
TGAAATTACCTCCCGGTTTC+AGG 0.188693 7_2:-70963693 Msa1073430:three_prime_UTR
CTCACAAATATATATACTTA+TGG 0.229255 7_2:+70962618 None:intergenic
ATCAAGTTCACCATGTAAAA+AGG 0.245252 7_2:+70963729 None:intergenic
TTTGATGCAGAATAGCTATT+TGG 0.255258 7_2:-70965177 Msa1073430:intron
TCAAACGTTCATACTGAAAT+AGG 0.265836 7_2:+70965005 None:intergenic
CACTCTGAAGGAAGGTAATC+TGG 0.290757 7_2:+70966968 None:intergenic
AAGATGATGGTTCTGATCTA+AGG 0.298246 7_2:+70963276 None:intergenic
AATTGCTTCTATCAAGTTGC+AGG 0.332604 7_2:-70964133 Msa1073430:three_prime_UTR
ATAAATGGCACAGAAAATTA+AGG 0.333731 7_2:-70965409 Msa1073430:intron
GTATGAACGTTTGATGGTTC+AGG 0.334072 7_2:-70964996 Msa1073430:intron
TATTCCAATTGTATCTCCTT+TGG 0.334438 7_2:-70964261 Msa1073430:three_prime_UTR
CTCATTGTAGTTTCAATTGT+AGG 0.337375 7_2:+70964304 None:intergenic
AAAGTGGAAATAGCTGTTAA+AGG 0.340111 7_2:+70967118 None:intergenic
ATTTCAGTATGAACGTTTGA+TGG 0.343025 7_2:-70965002 Msa1073430:exon
ACATGGAACTGCTGAACCTT+GGG 0.343547 7_2:-70962534 Msa1073430:three_prime_UTR
ACTTTCTTATTCTGTTCATA+TGG 0.350001 7_2:-70963164 Msa1073430:three_prime_UTR
ATTTGTGAGGTGGGGATCAT+TGG 0.352311 7_2:-70962604 Msa1073430:three_prime_UTR
ATTGAGGCTCTTGTAAATAA+TGG 0.354291 7_2:-70963890 Msa1073430:three_prime_UTR
ACTGCTGAACCTTGGGGTTG+GGG 0.354627 7_2:-70962527 Msa1073430:three_prime_UTR
AATTGAAACTACAATGAGTT+TGG 0.363964 7_2:-70964299 Msa1073430:three_prime_UTR
GAAAATTAAGGCAGGCAATC+AGG 0.364436 7_2:-70965397 Msa1073430:CDS
ACCGATACTGTCGAAAATTT+GGG 0.367071 7_2:-70964174 Msa1073430:three_prime_UTR
GAACTGCTGAACCTTGGGGT+TGG 0.381522 7_2:-70962529 Msa1073430:three_prime_UTR
TAGAGGTATTTGCATAAATT+GGG 0.396175 7_2:+70963138 None:intergenic
ACTTGACTAGGCACTCTAAC+TGG 0.400395 7_2:-70962986 Msa1073430:three_prime_UTR
CATATCGAAGCTGGGTTGTT+GGG 0.402320 7_2:-70963319 Msa1073430:three_prime_UTR
TGAACAGAATAAGAAAGTTC+TGG 0.406581 7_2:+70963169 None:intergenic
TGATCTAAGGGAAAATTAAC+AGG 0.407173 7_2:+70963289 None:intergenic
TAGTGATCCGGATTGGAAAC+TGG 0.407536 7_2:+70963235 None:intergenic
TAACAGCAGGTGGCATATCA+TGG 0.413187 7_2:+70964220 None:intergenic
GTTGTATGTGTTAGTTTATG+TGG 0.414087 7_2:-70963506 Msa1073430:three_prime_UTR
AGTATATATATTTGTGAGGT+GGG 0.416189 7_2:-70962613 Msa1073430:three_prime_UTR
TCACAAATATATATACTTAT+GGG 0.416596 7_2:+70962619 None:intergenic
TCGGGAACTCACCTATCTCT+TGG 0.419869 7_2:-70962949 Msa1073430:three_prime_UTR
ATCTCTATACGTCTTGAAAC+AGG 0.422311 7_2:-70963635 Msa1073430:three_prime_UTR
CAGGACATCTACACCAAATC+AGG 0.424348 7_2:-70963674 Msa1073430:three_prime_UTR
CGCTATCTCAAGGGAGATCC+CGG 0.425796 7_2:-70963082 Msa1073430:three_prime_UTR
GCATTGGAAATTTCACCAAA+TGG 0.432398 7_2:-70963764 Msa1073430:three_prime_UTR
TTATCGTGAAACCTTTGCTT+CGG 0.436925 7_2:-70963836 Msa1073430:three_prime_UTR
TGGTGTAGATGTCCTGAAAC+CGG 0.439241 7_2:+70963681 None:intergenic
TTGGTCTGCTTAACTGTCAC+TGG 0.444571 7_2:-70963193 Msa1073430:three_prime_UTR
TCAGAACCATCATCTTCCTT+TGG 0.444741 7_2:-70963269 Msa1073430:three_prime_UTR
CATCATCTTCCTTTGGCCAC+TGG 0.445427 7_2:-70963262 Msa1073430:three_prime_UTR
AGATCCAAAGGAGATACAAT+TGG 0.452038 7_2:+70964257 None:intergenic
CGTTGTTGCCAGAAATGATA+AGG 0.456222 7_2:+70963479 None:intergenic
CACATGGAACTGCTGAACCT+TGG 0.460427 7_2:-70962535 Msa1073430:three_prime_UTR
TTCTTATTCTGTTCATATGG+TGG 0.463788 7_2:-70963161 Msa1073430:three_prime_UTR
CTCTTGTAAATAATGGCACT+TGG 0.464768 7_2:-70963883 Msa1073430:three_prime_UTR
TCATATCGAAGCTGGGTTGT+TGG 0.465348 7_2:-70963320 Msa1073430:three_prime_UTR
AAGTGGAAATAGCTGTTAAA+GGG 0.466714 7_2:+70967119 None:intergenic
TTGGTGAAATTTCCAATGCT+TGG 0.468161 7_2:+70963768 None:intergenic
CACATTATACTGCAAGGCAT+TGG 0.468741 7_2:+70965043 None:intergenic
ACTTGATCTCATATCGAAGC+TGG 0.471426 7_2:-70963328 Msa1073430:three_prime_UTR
GGAGATACAATTGGAATAGC+AGG 0.479008 7_2:+70964266 None:intergenic
GTTGCAATGACGGACATAGA+AGG 0.485188 7_2:+70965151 None:intergenic
AGGCACTGTGAACATCCATT+TGG 0.488127 7_2:+70963749 None:intergenic
TCGTGTTGTTCGCTATCTCA+AGG 0.488277 7_2:-70963092 Msa1073430:three_prime_UTR
TTCTCGGCATTGAGGTGGCT+CGG 0.489328 7_2:-70963389 Msa1073430:three_prime_UTR
CGTATAGAGATTTGCGCAAG+CGG 0.490837 7_2:+70963647 None:intergenic
GATGCAGAATAGCTATTTGG+TGG 0.493646 7_2:-70965174 Msa1073430:intron
CCTCTGCTGAGGCAGAATCT+TGG 0.494529 7_2:-70962895 Msa1073430:three_prime_UTR
TTGGAGAAGAATACCTTGGC+CGG 0.495154 7_2:+70963063 None:intergenic
TGGAATTCCAGTTTCCAATC+CGG 0.496951 7_2:-70963242 Msa1073430:three_prime_UTR
TACTGCTTCGTCACGTCCTG+CGG 0.497560 7_2:-70964064 Msa1073430:three_prime_UTR
ATAGAGTTATGTTGCAATGA+TGG 0.497789 7_2:+70965107 None:intergenic
GACAGCTTCAGCTAAGGTTG+AGG 0.502320 7_2:+70963949 None:intergenic
CTGTTGCTGCTGCCAAGCAT+TGG 0.503199 7_2:-70963780 Msa1073430:three_prime_UTR
CGAAGCAGTAGAACAATTTG+AGG 0.503860 7_2:+70964077 None:intergenic
TTGACATGAGAGAATTCCAT+TGG 0.506280 7_2:+70963362 None:intergenic
GTTGCAATGATGGACATAGA+AGG 0.508431 7_2:+70965117 None:intergenic
AACTCAAAAGCGCTCTGCTA+CGG 0.508730 7_2:-70963591 Msa1073430:three_prime_UTR
TAGAAGACTAGTAGGTCGTT+TGG 0.513566 7_2:-70963212 Msa1073430:three_prime_UTR
CTGCTGAACCTTGGGGTTGG+GGG 0.518899 7_2:-70962526 Msa1073430:three_prime_UTR
ACTAGTCTTCTATAGTGATC+CGG 0.519526 7_2:+70963223 None:intergenic
GGACAAGTTGCCACTTGACT+AGG 0.520098 7_2:-70962998 Msa1073430:three_prime_UTR
ACAGTAAGAATGTTTCTCGC+TGG 0.520531 7_2:-70963860 Msa1073430:three_prime_UTR
TTTGAAGATCACAATCAGCT+TGG 0.521582 7_2:+70963044 None:intergenic
GACTAGGCACTCTAACTGGA+TGG 0.521716 7_2:-70962982 Msa1073430:three_prime_UTR
TGTCATGCAGCTGGAAATTG+AGG 0.522505 7_2:-70963906 Msa1073430:three_prime_UTR
AAATTTATGCCTGTGTGACT+CGG 0.527660 7_2:-70963024 Msa1073430:three_prime_UTR
TATGCCTGTGTGACTCGGAT+TGG 0.529171 7_2:-70963019 Msa1073430:three_prime_UTR
AACCTTAGCTGAAGCTGTCA+AGG 0.530835 7_2:-70963945 Msa1073430:three_prime_UTR
AGCTGTTAAAGGGAGCGGTT+CGG 0.531683 7_2:+70967129 None:intergenic
AACAGCAGGTGGCATATCAT+GGG 0.533367 7_2:+70964221 None:intergenic
TCTTCTATAGTGATCCGGAT+TGG 0.534462 7_2:+70963228 None:intergenic
GCTTTGTAAAACTGTGAAAG+TGG 0.538687 7_2:+70967102 None:intergenic
TGCAGCATGTATGCTTCTAT+GGG 0.539490 7_2:+70962653 None:intergenic
ATCCTTGACAGCTTCAGCTA+AGG 0.540620 7_2:+70963943 None:intergenic
GCATATCTTAGAGATGGTAT+TGG 0.542046 7_2:+70964101 None:intergenic
ACTGCTTCGTCACGTCCTGC+GGG 0.544126 7_2:-70964063 Msa1073430:intron
GAAAGTGAAAATGTTGTAAG+TGG 0.545195 7_2:+70967007 None:intergenic
CAAGACAACTTGTTGCATGT+TGG 0.547469 7_2:+70962922 None:intergenic
TAAGGCAGGCAATCAGGCTA+AGG 0.548461 7_2:-70965391 Msa1073430:CDS
TTGTTTACCTTGCACTCTGA+AGG 0.549553 7_2:+70966956 None:intergenic
AGATGATGGTTCTGATCTAA+GGG 0.550459 7_2:+70963277 None:intergenic
AACATAACTCTATGCTTGAA+TGG 0.556096 7_2:-70965097 Msa1073430:CDS
ATGGTGAATTGTCATGCAGC+TGG 0.557079 7_2:-70963915 Msa1073430:three_prime_UTR
CGTGTTGTTCGCTATCTCAA+GGG 0.559601 7_2:-70963091 Msa1073430:three_prime_UTR
TTACCTTCCTTCAGAGTGCA+AGG 0.559788 7_2:-70966963 Msa1073430:intron
TGAAACAGGCACCTCGATGT+TGG 0.560240 7_2:-70963621 Msa1073430:three_prime_UTR
TGGAGAAGAATACCTTGGCC+GGG 0.566302 7_2:+70963064 None:intergenic
GATCACTATAGAAGACTAGT+AGG 0.567578 7_2:-70963220 Msa1073430:three_prime_UTR
GGTGTAGATGTCCTGAAACC+GGG 0.567800 7_2:+70963682 None:intergenic
ATAGAGTTATGTTGCAATGA+CGG 0.570494 7_2:+70965141 None:intergenic
ACTCTGAAGGAAGGTAATCT+GGG 0.574191 7_2:+70966969 None:intergenic
ATGAAAGCATGTGCTCAAGT+AGG 0.574772 7_2:+70963440 None:intergenic
CTTGATCTCATATCGAAGCT+GGG 0.575266 7_2:-70963327 Msa1073430:three_prime_UTR
TTACCTTGCACTCTGAAGGA+AGG 0.577378 7_2:+70966960 None:intergenic
TGTCTTGCGTTCCTCTGCTG+AGG 0.578261 7_2:-70962906 Msa1073430:three_prime_UTR
GAAGCAGTAGAACAATTTGA+GGG 0.578294 7_2:+70964078 None:intergenic
GAGGTGGCTCGGAGTGCCAA+TGG 0.581445 7_2:-70963378 Msa1073430:three_prime_UTR
AAAAGCGCTCTGCTACGGTA+TGG 0.582687 7_2:-70963586 Msa1073430:three_prime_UTR
TGAGGGGCATATCTTAGAGA+TGG 0.583149 7_2:+70964095 None:intergenic
CACTCTCACATTATACTGCA+AGG 0.583183 7_2:+70965037 None:intergenic
CTCATGTGAAGAAGATCCAA+AGG 0.584080 7_2:+70964245 None:intergenic
CAGTGGCCAAAGGAAGATGA+TGG 0.586428 7_2:+70963263 None:intergenic
CTCAAGGGAGATCCCGGCCA+AGG 0.586447 7_2:-70963076 Msa1073430:three_prime_UTR
AAGTATATATATTTGTGAGG+TGG 0.588341 7_2:-70962614 Msa1073430:three_prime_UTR
AGTTAGAGTGCCTAGTCAAG+TGG 0.590900 7_2:+70962988 None:intergenic
ATGGCACAGAAAATTAAGGC+AGG 0.593953 7_2:-70965405 Msa1073430:intron
CAAGGCATTGGAGACATGAG+AGG 0.597150 7_2:+70965055 None:intergenic
GAAATAGCTGTTAAAGGGAG+CGG 0.598774 7_2:+70967124 None:intergenic
AGAAGCATACATGCTGCAGA+TGG 0.600485 7_2:-70962648 Msa1073430:three_prime_UTR
TTTACATTACACATTGCACA+TGG 0.601519 7_2:-70962551 Msa1073430:three_prime_UTR
CAGCTTGGAGAAGAATACCT+TGG 0.603159 7_2:+70963059 None:intergenic
ACTAGGCACTCTAACTGGAT+GGG 0.607942 7_2:-70962981 Msa1073430:three_prime_UTR
GCGTTCTAGTGCTCTTCTAG+AGG 0.612495 7_2:+70963121 None:intergenic
AACGTTCATACTGAAATAGG+TGG 0.613062 7_2:+70965008 None:intergenic
GTATATATATTTGTGAGGTG+GGG 0.619111 7_2:-70962612 Msa1073430:three_prime_UTR
ACTGGAATTCCAGTGGCCAA+AGG 0.624998 7_2:+70963253 None:intergenic
CCAAGATTCTGCCTCAGCAG+AGG 0.629953 7_2:+70962895 None:intergenic
CATGGAACTGCTGAACCTTG+GGG 0.630810 7_2:-70962533 Msa1073430:three_prime_UTR
CATAAGTATATATATTTGTG+AGG 0.633246 7_2:-70962617 Msa1073430:three_prime_UTR
AAGGCATTGGAGACATGAGA+GGG 0.634063 7_2:+70965056 None:intergenic
GTATATATGAAATTACCTCC+CGG 0.636083 7_2:-70963700 Msa1073430:three_prime_UTR
TTGTCCAATCCGAGTCACAC+AGG 0.644821 7_2:+70963015 None:intergenic
GCTGCATGACAATTCACCAT+CGG 0.652563 7_2:+70963918 None:intergenic
ACTGTCGAAAATTTGGGACG+TGG 0.655059 7_2:-70964168 Msa1073430:three_prime_UTR
ATTGGAAACTGGAATTCCAG+TGG 0.659775 7_2:+70963246 None:intergenic
AAGCTGTCAAGGATATCCGA+TGG 0.660825 7_2:-70963934 Msa1073430:three_prime_UTR
TGAGGCAGAATCTTGGCATG+AGG 0.666328 7_2:-70962888 Msa1073430:three_prime_UTR
GATACAATTGGAATAGCAGG+TGG 0.673598 7_2:+70964269 None:intergenic
AAGTGTGAATCTTGACACGA+AGG 0.678143 7_2:-70965367 Msa1073430:intron
CTTGCAGTATAATGTGAGAG+TGG 0.694938 7_2:-70965036 Msa1073430:CDS
TCTTGGCATGAGGTTCGACA+AGG 0.696571 7_2:-70962878 Msa1073430:intron
AAGCAGTAGAACAATTTGAG+GGG 0.710286 7_2:+70964079 None:intergenic
AGTTTGGAAAACCAACATCG+AGG 0.720511 7_2:+70963610 None:intergenic
GTAGATGTCCTGAAACCGGG+AGG 0.744447 7_2:+70963685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCATTTTATCAATTTTTT+AGG - chr7_2:70962722-70962741 Msa1073430:intron 10.0%
!!! TTCATTTTATCAATTTTTTA+GGG - chr7_2:70962723-70962742 Msa1073430:intron 10.0%
!!! ATAACATTTTATTTCAATAT+CGG - chr7_2:70964331-70964350 Msa1073430:intron 10.0%
!! CATGATATTAAAAAAAAAAA+AGG + chr7_2:70965021-70965040 None:intergenic 10.0%
!!! TTTTTTTTATGTATATCAAC+TGG + chr7_2:70962835-70962854 None:intergenic 15.0%
!! GTTGATATACATAAAAAAAA+AGG - chr7_2:70962835-70962854 Msa1073430:intron 15.0%
!! TATACATAAAAAAAAAGGTT+TGG - chr7_2:70962840-70962859 Msa1073430:intron 15.0%
!! ATACATAAAAAAAAAGGTTT+GGG - chr7_2:70962841-70962860 Msa1073430:intron 15.0%
!! TCTCAACATATAAAAAAAAA+AGG - chr7_2:70962936-70962955 Msa1073430:three_prime_UTR 15.0%
!!! CATATAAAAAAAAAAGGTTT+TGG - chr7_2:70962942-70962961 Msa1073430:three_prime_UTR 15.0%
!! AATTATCACTAAAATCATAA+AGG + chr7_2:70964067-70964086 None:intergenic 15.0%
!! AATAATATCATGAAGATATT+AGG - chr7_2:70964823-70964842 Msa1073430:intron 15.0%
!! ATAATATCATGAAGATATTA+GGG - chr7_2:70964824-70964843 Msa1073430:intron 15.0%
!!! ACATAATAAAAAGTATGTAA+AGG + chr7_2:70966824-70966843 None:intergenic 15.0%
!! TGTTTATAAAAATATTTGAG+TGG - chr7_2:70966841-70966860 Msa1073430:intron 15.0%
!! TCACAAATATATATACTTAT+GGG + chr7_2:70966986-70967005 None:intergenic 15.0%
!! AACACAACATTATATTTGAA+TGG + chr7_2:70962678-70962697 None:intergenic 20.0%
!!! ACAAGTGTTATTTTTTTTAG+AGG + chr7_2:70962793-70962812 None:intergenic 20.0%
!!! ACTTGTTTATGATTTTTGTT+TGG - chr7_2:70962807-70962826 Msa1073430:intron 20.0%
!!! CTTGTTTATGATTTTTGTTT+GGG - chr7_2:70962808-70962827 Msa1073430:intron 20.0%
!!! TTGTTTATGATTTTTGTTTG+GGG - chr7_2:70962809-70962828 Msa1073430:intron 20.0%
!!! TTTTGGTCTGTAAAAAAAAA+AGG - chr7_2:70962959-70962978 Msa1073430:three_prime_UTR 20.0%
!!! TCTGTAAAAAAAAAAGGTTT+TGG - chr7_2:70962965-70962984 Msa1073430:three_prime_UTR 20.0%
!!! ATAAGCTTTTTCAATCTAAT+TGG - chr7_2:70963379-70963398 Msa1073430:three_prime_UTR 20.0%
!!! TTTTAAGTAGAAAACTAATC+AGG + chr7_2:70963463-70963482 None:intergenic 20.0%
!!! TTAGTTTTCTACTTAAAAAC+AGG - chr7_2:70963465-70963484 Msa1073430:three_prime_UTR 20.0%
!! TAACTTTATTGTTTGAGTAT+TGG - chr7_2:70963530-70963549 Msa1073430:three_prime_UTR 20.0%
!!! AATCTCAACATTTTAACAAA+AGG - chr7_2:70963925-70963944 Msa1073430:three_prime_UTR 20.0%
!!! AAAAGGTATACTATAATTCA+AGG - chr7_2:70963942-70963961 Msa1073430:three_prime_UTR 20.0%
!!! ACCATTTTCTAGTTATTATA+TGG - chr7_2:70964118-70964137 Msa1073430:three_prime_UTR 20.0%
!! TCCATATAATAACTAGAAAA+TGG + chr7_2:70964122-70964141 None:intergenic 20.0%
!!! TAAATACACATTTTCAAAGA+GGG + chr7_2:70964728-70964747 None:intergenic 20.0%
!! TTGAAAATGTGTATTTACAT+TGG - chr7_2:70964731-70964750 Msa1073430:intron 20.0%
!! ATGATATTATTCGCAATTAA+TGG + chr7_2:70964814-70964833 None:intergenic 20.0%
!! TAATATCATGAAGATATTAG+GGG - chr7_2:70964825-70964844 Msa1073430:intron 20.0%
!! ATAATTCACATATTTGGATA+GGG + chr7_2:70965576-70965595 None:intergenic 20.0%
!! TAAAAAAAGCAAACAAATGA+GGG + chr7_2:70966926-70966945 None:intergenic 20.0%
!! ATAAAAAAAGCAAACAAATG+AGG + chr7_2:70966927-70966946 None:intergenic 20.0%
!! CTCACAAATATATATACTTA+TGG + chr7_2:70966987-70967006 None:intergenic 20.0%
!! CATAAGTATATATATTTGTG+AGG - chr7_2:70966985-70967004 Msa1073430:CDS 20.0%
!! TTTGGATCATTCTAAAAAGT+TGG - chr7_2:70962564-70962583 Msa1073430:three_prime_UTR 25.0%
!! TTGGATCATTCTAAAAAGTT+GGG - chr7_2:70962565-70962584 Msa1073430:three_prime_UTR 25.0%
!! ATTTTGCACTAAGTTCTATA+GGG + chr7_2:70963340-70963359 None:intergenic 25.0%
! GATGTTAATATCTTAACAAC+TGG - chr7_2:70963401-70963420 Msa1073430:three_prime_UTR 25.0%
!! TTATCTAGAATTTAGGACTA+GGG - chr7_2:70963596-70963615 Msa1073430:three_prime_UTR 25.0%
! CATTCATGAAATGTTTCAAA+TGG + chr7_2:70963622-70963641 None:intergenic 25.0%
!! CATTTGAAACATTTCATGAA+TGG - chr7_2:70963620-70963639 Msa1073430:three_prime_UTR 25.0%
!! TAATCTGTCTTACTATTTTG+TGG - chr7_2:70963676-70963695 Msa1073430:three_prime_UTR 25.0%
!!! TCTTTTACGAACTTTGAAAA+TGG + chr7_2:70963739-70963758 None:intergenic 25.0%
! ATAATCCTATTGTGTTGAAA+GGG + chr7_2:70963897-70963916 None:intergenic 25.0%
! AATAATCCTATTGTGTTGAA+AGG + chr7_2:70963898-70963917 None:intergenic 25.0%
! AGAGGATAAATCTCTATAAA+TGG - chr7_2:70964178-70964197 Msa1073430:three_prime_UTR 25.0%
! ATAAATGGCACAGAAAATTA+AGG - chr7_2:70964193-70964212 Msa1073430:three_prime_UTR 25.0%
!!! TAGATAGATTTTGAAGCATT+TGG - chr7_2:70964664-70964683 Msa1073430:intron 25.0%
!! GTAAATACACATTTTCAAAG+AGG + chr7_2:70964729-70964748 None:intergenic 25.0%
! AATGTGTATTTACATTGGAT+TGG - chr7_2:70964736-70964755 Msa1073430:intron 25.0%
! ACAACAATGAAACGATAATA+AGG + chr7_2:70964767-70964786 None:intergenic 25.0%
! GTTTCATTGTTGTAATTCTT+GGG - chr7_2:70964774-70964793 Msa1073430:intron 25.0%
! AAGTTGAAAATGTGTATTTG+TGG - chr7_2:70965149-70965168 Msa1073430:CDS 25.0%
! AGTTGAAAATGTGTATTTGT+GGG - chr7_2:70965150-70965169 Msa1073430:CDS 25.0%
! TTCAACAATATCATTGAAAG+AGG + chr7_2:70965257-70965276 None:intergenic 25.0%
! TCTTTCAATGATATTGTTGA+AGG - chr7_2:70965256-70965275 Msa1073430:intron 25.0%
! AATTGAAACTACAATGAGTT+TGG - chr7_2:70965303-70965322 Msa1073430:intron 25.0%
! TAATTCACATATTTGGATAG+GGG + chr7_2:70965575-70965594 None:intergenic 25.0%
! CATAATTCACATATTTGGAT+AGG + chr7_2:70965577-70965596 None:intergenic 25.0%
! GTTAGCATAATTCACATATT+TGG + chr7_2:70965582-70965601 None:intergenic 25.0%
! TGCTTTCATATGAAAAATCT+TGG - chr7_2:70966176-70966195 Msa1073430:intron 25.0%
!!! TGCCGAGAAAATATTTTAAA+GGG + chr7_2:70966202-70966221 None:intergenic 25.0%
!!! ATGCCGAGAAAATATTTTAA+AGG + chr7_2:70966203-70966222 None:intergenic 25.0%
! ACTTTCTTATTCTGTTCATA+TGG - chr7_2:70966438-70966457 Msa1073430:intron 25.0%
!!! TAGAGGTATTTGCATAAATT+GGG + chr7_2:70966467-70966486 None:intergenic 25.0%
!! AGTATGTAAAGGAAATTTTC+TGG + chr7_2:70966813-70966832 None:intergenic 25.0%
! ATAACAATAACAAAGTCAGA+AGG + chr7_2:70966877-70966896 None:intergenic 25.0%
!!! TGTTATTGTTATTTTGCTGA+TGG - chr7_2:70966885-70966904 Msa1073430:intron 25.0%
! AAGTATATATATTTGTGAGG+TGG - chr7_2:70966988-70967007 Msa1073430:CDS 25.0%
! AGTATATATATTTGTGAGGT+GGG - chr7_2:70966989-70967008 Msa1073430:CDS 25.0%
!! TCAAAAAGAAACTTTTCTCT+TGG - chr7_2:70967114-70967133 Msa1073430:CDS 25.0%
!! CAAAAAGAAACTTTTCTCTT+GGG - chr7_2:70967115-70967134 Msa1073430:CDS 25.0%
AAGTGGAAATAGCTGTTAAA+GGG + chr7_2:70962486-70962505 None:intergenic 30.0%
AAAGTGGAAATAGCTGTTAA+AGG + chr7_2:70962487-70962506 None:intergenic 30.0%
! TGGATCATTCTAAAAAGTTG+GGG - chr7_2:70962566-70962585 Msa1073430:three_prime_UTR 30.0%
GAAAGTGAAAATGTTGTAAG+TGG + chr7_2:70962598-70962617 None:intergenic 30.0%
!!! AATTTTTTAGGGTGTGACAA+AGG - chr7_2:70962734-70962753 Msa1073430:intron 30.0%
!!! ATTTTTTAGGGTGTGACAAA+GGG - chr7_2:70962735-70962754 Msa1073430:intron 30.0%
!! TTTTCTTGTTTCAAACGATG+TGG - chr7_2:70963244-70963263 Msa1073430:three_prime_UTR 30.0%
! TTTCTTGTTTCAAACGATGT+GGG - chr7_2:70963245-70963264 Msa1073430:three_prime_UTR 30.0%
!! AAAAACTTGTTTCTGTTGTG+AGG - chr7_2:70963271-70963290 Msa1073430:three_prime_UTR 30.0%
! GATTTTGCACTAAGTTCTAT+AGG + chr7_2:70963341-70963360 None:intergenic 30.0%
ATACACAATTCAGAATGTGA+TGG - chr7_2:70963489-70963508 Msa1073430:three_prime_UTR 30.0%
CTAGTCCTAAATTCTAGATA+AGG + chr7_2:70963597-70963616 None:intergenic 30.0%
! CTTATCTAGAATTTAGGACT+AGG - chr7_2:70963595-70963614 Msa1073430:three_prime_UTR 30.0%
ACAATCAAAGACATCATTTC+CGG + chr7_2:70963768-70963787 None:intergenic 30.0%
! CATGTTTTCTTCTTCAACAT+GGG + chr7_2:70963796-70963815 None:intergenic 30.0%
! ACATGTTTTCTTCTTCAACA+TGG + chr7_2:70963797-70963816 None:intergenic 30.0%
! AACAGTTTTTGTAGAAGAAG+AGG - chr7_2:70963818-70963837 Msa1073430:three_prime_UTR 30.0%
ATACATAACGTAGAATGTGA+TGG - chr7_2:70964032-70964051 Msa1073430:intron 30.0%
AGAGATTTATCCTCTTGAAT+TGG + chr7_2:70964173-70964192 None:intergenic 30.0%
! ATGTTATCAATCAAGTGTTG+AGG + chr7_2:70964318-70964337 None:intergenic 30.0%
TTTGATGCAGAATAGCTATT+TGG - chr7_2:70964425-70964444 Msa1073430:intron 30.0%
ATAGAGTTATGTTGCAATGA+CGG + chr7_2:70964464-70964483 None:intergenic 30.0%
ATAGAGTTATGTTGCAATGA+TGG + chr7_2:70964464-70964483 None:intergenic 30.0%
AACATAACTCTATGCTTGAA+TGG - chr7_2:70964505-70964524 Msa1073430:intron 30.0%
TCAAACGTTCATACTGAAAT+AGG + chr7_2:70964600-70964619 None:intergenic 30.0%
ATTTCAGTATGAACGTTTGA+TGG - chr7_2:70964600-70964619 Msa1073430:intron 30.0%
TGTGCTAAATATATTTGCCT+TGG - chr7_2:70964640-70964659 Msa1073430:intron 30.0%
CTTCAAAATCTATCTAACCA+AGG + chr7_2:70964660-70964679 None:intergenic 30.0%
CGTTTCATTGTTGTAATTCT+TGG - chr7_2:70964773-70964792 Msa1073430:intron 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr7_2:70965012-70965031 None:intergenic 30.0%
CTCATTGTAGTTTCAATTGT+AGG + chr7_2:70965301-70965320 None:intergenic 30.0%
TATTCCAATTGTATCTCCTT+TGG - chr7_2:70965341-70965360 Msa1073430:intron 30.0%
! CAACTTGATAGAAGCAATTT+TGG + chr7_2:70965468-70965487 None:intergenic 30.0%
ATTGAGGCTCTTGTAAATAA+TGG - chr7_2:70965712-70965731 Msa1073430:intron 30.0%
ATCAAGTTCACCATGTAAAA+AGG + chr7_2:70965876-70965895 None:intergenic 30.0%
GTATATATGAAATTACCTCC+CGG - chr7_2:70965902-70965921 Msa1073430:intron 30.0%
! GTTGTATGTGTTAGTTTATG+TGG - chr7_2:70966096-70966115 Msa1073430:intron 30.0%
!!! GGCCCTTTAAAATATTTTCT+CGG - chr7_2:70966197-70966216 Msa1073430:intron 30.0%
! AAAATATTTTCTCGGCATTG+AGG - chr7_2:70966205-70966224 Msa1073430:intron 30.0%
TGATCTAAGGGAAAATTAAC+AGG + chr7_2:70966316-70966335 None:intergenic 30.0%
TGAACAGAATAAGAAAGTTC+TGG + chr7_2:70966436-70966455 None:intergenic 30.0%
TTCTTATTCTGTTCATATGG+TGG - chr7_2:70966441-70966460 Msa1073430:intron 30.0%
!! CTAGAGGTATTTGCATAAAT+TGG + chr7_2:70966468-70966487 None:intergenic 30.0%
GTATATATATTTGTGAGGTG+GGG - chr7_2:70966990-70967009 Msa1073430:CDS 30.0%
TTTACATTACACATTGCACA+TGG - chr7_2:70967051-70967070 Msa1073430:CDS 30.0%
GCTTTGTAAAACTGTGAAAG+TGG + chr7_2:70962503-70962522 None:intergenic 35.0%
! CACAGTTTTACAAAGCACAA+AGG - chr7_2:70962507-70962526 Msa1073430:three_prime_UTR 35.0%
CAAAGAACTTGAAGCTTCTT+TGG - chr7_2:70962546-70962565 Msa1073430:three_prime_UTR 35.0%
TACTGTGTCCTTGATTTCTA+AGG + chr7_2:70963145-70963164 None:intergenic 35.0%
TTGAACAGGATCTGTTCTAT+AGG + chr7_2:70963175-70963194 None:intergenic 35.0%
ATACAAATGCTTCTGACTCT+TGG - chr7_2:70963312-70963331 Msa1073430:three_prime_UTR 35.0%
! AGGCACCTTATCTAGAATTT+AGG - chr7_2:70963589-70963608 Msa1073430:three_prime_UTR 35.0%
AGTTCGTAAAAGATTGTTGC+CGG - chr7_2:70963746-70963765 Msa1073430:three_prime_UTR 35.0%
! TTTTGTAGAAGAAGAGGAAC+TGG - chr7_2:70963824-70963843 Msa1073430:three_prime_UTR 35.0%
TTAAGCCCTTTCAACACAAT+AGG - chr7_2:70963889-70963908 Msa1073430:three_prime_UTR 35.0%
GATGGAGCAATAACAAAACT+TGG + chr7_2:70964290-70964309 None:intergenic 35.0%
AACGTTCATACTGAAATAGG+TGG + chr7_2:70964597-70964616 None:intergenic 35.0%
! GAAAAAGCAGCTGAATTTTC+TGG + chr7_2:70964704-70964723 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr7_2:70964921-70964940 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr7_2:70964920-70964939 Msa1073430:intron 35.0%
ATCATACATAATCCATCCCA+TGG + chr7_2:70965190-70965209 None:intergenic 35.0%
!! GGGATGGATTATGTATGATT+TGG - chr7_2:70965191-70965210 Msa1073430:intron 35.0%
ACAATATCATTGAAAGAGGC+AGG + chr7_2:70965253-70965272 None:intergenic 35.0%
AGATCCAAAGGAGATACAAT+TGG + chr7_2:70965348-70965367 None:intergenic 35.0%
!!! TCATCACTGATTTTAACAGC+AGG + chr7_2:70965398-70965417 None:intergenic 35.0%
TACCGATACTGTCGAAAATT+TGG - chr7_2:70965427-70965446 Msa1073430:intron 35.0%
ACCGATACTGTCGAAAATTT+GGG - chr7_2:70965428-70965447 Msa1073430:intron 35.0%
! TCCCAAATTTTCGACAGTAT+CGG + chr7_2:70965432-70965451 None:intergenic 35.0%
! AATTGCTTCTATCAAGTTGC+AGG - chr7_2:70965469-70965488 Msa1073430:intron 35.0%
GCATATCTTAGAGATGGTAT+TGG + chr7_2:70965504-70965523 None:intergenic 35.0%
AAGCAGTAGAACAATTTGAG+GGG + chr7_2:70965526-70965545 None:intergenic 35.0%
GAAGCAGTAGAACAATTTGA+GGG + chr7_2:70965527-70965546 None:intergenic 35.0%
ACATATTTGGATAGGGGATA+GGG + chr7_2:70965569-70965588 None:intergenic 35.0%
GCTAAAAAATGCATGTGTTG+TGG + chr7_2:70965611-70965630 None:intergenic 35.0%
CTCTTGTAAATAATGGCACT+TGG - chr7_2:70965719-70965738 Msa1073430:intron 35.0%
TTATCGTGAAACCTTTGCTT+CGG - chr7_2:70965766-70965785 Msa1073430:intron 35.0%
TTGGTGAAATTTCCAATGCT+TGG + chr7_2:70965837-70965856 None:intergenic 35.0%
GCATTGGAAATTTCACCAAA+TGG - chr7_2:70965838-70965857 Msa1073430:intron 35.0%
ATCTCTATACGTCTTGAAAC+AGG - chr7_2:70965967-70965986 Msa1073430:intron 35.0%
TTGACATGAGAGAATTCCAT+TGG + chr7_2:70966243-70966262 None:intergenic 35.0%
!! AGATGATGGTTCTGATCTAA+GGG + chr7_2:70966328-70966347 None:intergenic 35.0%
!! AAGATGATGGTTCTGATCTA+AGG + chr7_2:70966329-70966348 None:intergenic 35.0%
!! ACTAGTCTTCTATAGTGATC+CGG + chr7_2:70966382-70966401 None:intergenic 35.0%
GATCACTATAGAAGACTAGT+AGG - chr7_2:70966382-70966401 Msa1073430:intron 35.0%
TTTGAAGATCACAATCAGCT+TGG + chr7_2:70966561-70966580 None:intergenic 35.0%
AAATTTATGCCTGTGTGACT+CGG - chr7_2:70966578-70966597 Msa1073430:intron 35.0%
!!! ATGTTGGTTTTCCAAGAGAT+AGG + chr7_2:70966667-70966686 None:intergenic 35.0%
!!! ATTGTTATTTTGCTGATGGC+AGG - chr7_2:70966889-70966908 Msa1073430:intron 35.0%
!!! TTGTTATTTTGCTGATGGCA+GGG - chr7_2:70966890-70966909 Msa1073430:intron 35.0%
GAAATAGCTGTTAAAGGGAG+CGG + chr7_2:70962481-70962500 None:intergenic 40.0%
! ACTCTGAAGGAAGGTAATCT+GGG + chr7_2:70962636-70962655 None:intergenic 40.0%
TTGTTTACCTTGCACTCTGA+AGG + chr7_2:70962649-70962668 None:intergenic 40.0%
TCCTGTCTCCTTAGAAATCA+AGG - chr7_2:70963134-70963153 Msa1073430:three_prime_UTR 40.0%
! TCCTTGATTTCTAAGGAGAC+AGG + chr7_2:70963138-70963157 None:intergenic 40.0%
GAACAGATCCTGTTCAAGTA+AGG - chr7_2:70963178-70963197 Msa1073430:three_prime_UTR 40.0%
ATGGCACAGAAAATTAAGGC+AGG - chr7_2:70964197-70964216 Msa1073430:three_prime_UTR 40.0%
GAAAATTAAGGCAGGCAATC+AGG - chr7_2:70964205-70964224 Msa1073430:three_prime_UTR 40.0%
AAGTGTGAATCTTGACACGA+AGG - chr7_2:70964235-70964254 Msa1073430:three_prime_UTR 40.0%
!! TCAATCAAGTGTTGAGGTGA+GGG + chr7_2:70964312-70964331 None:intergenic 40.0%
!! ATCAATCAAGTGTTGAGGTG+AGG + chr7_2:70964313-70964332 None:intergenic 40.0%
! TGCTCATGTTTCGAGTAACT+TGG - chr7_2:70964374-70964393 Msa1073430:intron 40.0%
GATGCAGAATAGCTATTTGG+TGG - chr7_2:70964428-70964447 Msa1073430:intron 40.0%
!! GTTGCAATGATGGACATAGA+AGG + chr7_2:70964488-70964507 None:intergenic 40.0%
CACATTATACTGCAAGGCAT+TGG + chr7_2:70964562-70964581 None:intergenic 40.0%
CACTCTCACATTATACTGCA+AGG + chr7_2:70964568-70964587 None:intergenic 40.0%
CTTGCAGTATAATGTGAGAG+TGG - chr7_2:70964566-70964585 Msa1073430:intron 40.0%
! GTATGAACGTTTGATGGTTC+AGG - chr7_2:70964606-70964625 Msa1073430:intron 40.0%
!!! GCAGCTGAATTTTCTGGTTA+AGG + chr7_2:70964698-70964717 None:intergenic 40.0%
GAAGATATTAGGGGTAACCT+TGG - chr7_2:70964834-70964853 Msa1073430:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr7_2:70964914-70964933 Msa1073430:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr7_2:70964915-70964934 Msa1073430:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr7_2:70964946-70964965 Msa1073430:intron 40.0%
GATACAATTGGAATAGCAGG+TGG + chr7_2:70965336-70965355 None:intergenic 40.0%
GGAGATACAATTGGAATAGC+AGG + chr7_2:70965339-70965358 None:intergenic 40.0%
CTCATGTGAAGAAGATCCAA+AGG + chr7_2:70965360-70965379 None:intergenic 40.0%
!!! TCACTGATTTTAACAGCAGG+TGG + chr7_2:70965395-70965414 None:intergenic 40.0%
!!! TTTTCGACAGTATCGGTAAC+AGG + chr7_2:70965425-70965444 None:intergenic 40.0%
CGAAGCAGTAGAACAATTTG+AGG + chr7_2:70965528-70965547 None:intergenic 40.0%
CACATATTTGGATAGGGGAT+AGG + chr7_2:70965570-70965589 None:intergenic 40.0%
TTCTGTAGCTGCAGAAATAG+CGG + chr7_2:70965633-70965652 None:intergenic 40.0%
ACAGTAAGAATGTTTCTCGC+TGG - chr7_2:70965742-70965761 Msa1073430:intron 40.0%
! CATTTTCACAACCGAAGCAA+AGG + chr7_2:70965780-70965799 None:intergenic 40.0%
CTTTGCTTCGGTTGTGAAAA+TGG - chr7_2:70965778-70965797 Msa1073430:intron 40.0%
! GTTCACAGTGCCTTTTTACA+TGG - chr7_2:70965863-70965882 Msa1073430:intron 40.0%
AGTTTGGAAAACCAACATCG+AGG + chr7_2:70965995-70966014 None:intergenic 40.0%
GTGGATGACCTTATCATTTC+TGG - chr7_2:70966115-70966134 Msa1073430:intron 40.0%
CGTTGTTGCCAGAAATGATA+AGG + chr7_2:70966126-70966145 None:intergenic 40.0%
! ATGAAAGCATGTGCTCAAGT+AGG + chr7_2:70966165-70966184 None:intergenic 40.0%
!! ATATTTTCTCGGCATTGAGG+TGG - chr7_2:70966208-70966227 Msa1073430:intron 40.0%
ACTTGATCTCATATCGAAGC+TGG - chr7_2:70966274-70966293 Msa1073430:intron 40.0%
CTTGATCTCATATCGAAGCT+GGG - chr7_2:70966275-70966294 Msa1073430:intron 40.0%
TCAGAACCATCATCTTCCTT+TGG - chr7_2:70966333-70966352 Msa1073430:intron 40.0%
ATTGGAAACTGGAATTCCAG+TGG + chr7_2:70966359-70966378 None:intergenic 40.0%
TGGAATTCCAGTTTCCAATC+CGG - chr7_2:70966360-70966379 Msa1073430:intron 40.0%
TCTTCTATAGTGATCCGGAT+TGG + chr7_2:70966377-70966396 None:intergenic 40.0%
TAGAAGACTAGTAGGTCGTT+TGG - chr7_2:70966390-70966409 Msa1073430:intron 40.0%
!!! ACTGGATGGGTTGTTTTTCT+CGG - chr7_2:70966634-70966653 Msa1073430:intron 40.0%
!! CAAGACAACTTGTTGCATGT+TGG + chr7_2:70966683-70966702 None:intergenic 40.0%
TGCAGCATGTATGCTTCTAT+GGG + chr7_2:70966952-70966971 None:intergenic 40.0%
! CACTCTGAAGGAAGGTAATC+TGG + chr7_2:70962637-70962656 None:intergenic 45.0%
TTACCTTCCTTCAGAGTGCA+AGG - chr7_2:70962639-70962658 Msa1073430:three_prime_UTR 45.0%
! TTACCTTGCACTCTGAAGGA+AGG + chr7_2:70962645-70962664 None:intergenic 45.0%
TTCTCAGACACACGTTGTCT+GGG + chr7_2:70963015-70963034 None:intergenic 45.0%
TGCGATCAGAGCGTGATTAA+CGG + chr7_2:70963085-70963104 None:intergenic 45.0%
TTAATCACGCTCTGATCGCA+CGG - chr7_2:70963085-70963104 Msa1073430:three_prime_UTR 45.0%
AGGAGACAGGAACATATGTC+TGG + chr7_2:70963125-70963144 None:intergenic 45.0%
ATAAGACACGCGTGAAGCAT+TGG + chr7_2:70963210-70963229 None:intergenic 45.0%
TGCAAGCATGACAATCTGAG+AGG - chr7_2:70963564-70963583 Msa1073430:three_prime_UTR 45.0%
GACAGTCAGTCCAATTCAAG+AGG - chr7_2:70964160-70964179 Msa1073430:three_prime_UTR 45.0%
CTTGACACGAAGGTTAGACA+AGG - chr7_2:70964245-70964264 Msa1073430:three_prime_UTR 45.0%
!! GTTGCAATGACGGACATAGA+AGG + chr7_2:70964454-70964473 None:intergenic 45.0%
!! AAGGCATTGGAGACATGAGA+GGG + chr7_2:70964549-70964568 None:intergenic 45.0%
GTTGTTGTCATGTGACCGTA+AGG - chr7_2:70964870-70964889 Msa1073430:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr7_2:70964910-70964929 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7_2:70964942-70964961 Msa1073430:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr7_2:70964945-70964964 Msa1073430:intron 45.0%
AGACATCCAATGTGTACAGC+AGG + chr7_2:70965081-70965100 None:intergenic 45.0%
! GTATTTGTGGGCTATGCCTA+TGG - chr7_2:70965162-70965181 Msa1073430:CDS 45.0%
AACAGCAGGTGGCATATCAT+GGG + chr7_2:70965384-70965403 None:intergenic 45.0%
TAACAGCAGGTGGCATATCA+TGG + chr7_2:70965385-70965404 None:intergenic 45.0%
! ACTGTCGAAAATTTGGGACG+TGG - chr7_2:70965434-70965453 Msa1073430:intron 45.0%
! TGAGGGGCATATCTTAGAGA+TGG + chr7_2:70965510-70965529 None:intergenic 45.0%
AACCTTAGCTGAAGCTGTCA+AGG - chr7_2:70965657-70965676 Msa1073430:intron 45.0%
ATCCTTGACAGCTTCAGCTA+AGG + chr7_2:70965662-70965681 None:intergenic 45.0%
AAGCTGTCAAGGATATCCGA+TGG - chr7_2:70965668-70965687 Msa1073430:intron 45.0%
GCTGCATGACAATTCACCAT+CGG + chr7_2:70965687-70965706 None:intergenic 45.0%
ATGGTGAATTGTCATGCAGC+TGG - chr7_2:70965687-70965706 Msa1073430:intron 45.0%
TGTCATGCAGCTGGAAATTG+AGG - chr7_2:70965696-70965715 Msa1073430:intron 45.0%
! AGGCACTGTGAACATCCATT+TGG + chr7_2:70965856-70965875 None:intergenic 45.0%
TGAAATTACCTCCCGGTTTC+AGG - chr7_2:70965909-70965928 Msa1073430:intron 45.0%
TGGTGTAGATGTCCTGAAAC+CGG + chr7_2:70965924-70965943 None:intergenic 45.0%
CAGGACATCTACACCAAATC+AGG - chr7_2:70965928-70965947 Msa1073430:intron 45.0%
CGTATAGAGATTTGCGCAAG+CGG + chr7_2:70965958-70965977 None:intergenic 45.0%
!!! TAGCAGAGCGCTTTTGAGTT+TGG + chr7_2:70966011-70966030 None:intergenic 45.0%
!! AACTCAAAAGCGCTCTGCTA+CGG - chr7_2:70966011-70966030 Msa1073430:intron 45.0%
TCATATCGAAGCTGGGTTGT+TGG - chr7_2:70966282-70966301 Msa1073430:intron 45.0%
CATATCGAAGCTGGGTTGTT+GGG - chr7_2:70966283-70966302 Msa1073430:intron 45.0%
! TAGTGATCCGGATTGGAAAC+TGG + chr7_2:70966370-70966389 None:intergenic 45.0%
TTGGTCTGCTTAACTGTCAC+TGG - chr7_2:70966409-70966428 Msa1073430:intron 45.0%
! TCGTGTTGTTCGCTATCTCA+AGG - chr7_2:70966510-70966529 Msa1073430:intron 45.0%
! CGTGTTGTTCGCTATCTCAA+GGG - chr7_2:70966511-70966530 Msa1073430:intron 45.0%
TTGGAGAAGAATACCTTGGC+CGG + chr7_2:70966542-70966561 None:intergenic 45.0%
CAGCTTGGAGAAGAATACCT+TGG + chr7_2:70966546-70966565 None:intergenic 45.0%
! AGTTAGAGTGCCTAGTCAAG+TGG + chr7_2:70966617-70966636 None:intergenic 45.0%
ACTTGACTAGGCACTCTAAC+TGG - chr7_2:70966616-70966635 Msa1073430:intron 45.0%
ACTAGGCACTCTAACTGGAT+GGG - chr7_2:70966621-70966640 Msa1073430:intron 45.0%
!!! CTGGATGGGTTGTTTTTCTC+GGG - chr7_2:70966635-70966654 Msa1073430:intron 45.0%
CTGCAGCATGTATGCTTCTA+TGG + chr7_2:70966953-70966972 None:intergenic 45.0%
! AGAAGCATACATGCTGCAGA+TGG - chr7_2:70966954-70966973 Msa1073430:intron 45.0%
ATTTGTGAGGTGGGGATCAT+TGG - chr7_2:70966998-70967017 Msa1073430:CDS 45.0%
ACATGGAACTGCTGAACCTT+GGG - chr7_2:70967068-70967087 Msa1073430:CDS 45.0%
!! ATGATATTAAAAAAAAAAAA+GGG + chr7_2:70965020-70965039 None:intergenic 5.0%
AGCTGTTAAAGGGAGCGGTT+CGG + chr7_2:70962476-70962495 None:intergenic 50.0%
TTCTCAGACACACGCTGTCT+GGG + chr7_2:70962891-70962910 None:intergenic 50.0%
TCTCAGACACACGTTGTCTG+GGG + chr7_2:70963014-70963033 None:intergenic 50.0%
GTTCTCAGACACACGTTGTC+TGG + chr7_2:70963016-70963035 None:intergenic 50.0%
GGTCACGACCTTACTTGAAC+AGG + chr7_2:70963189-70963208 None:intergenic 50.0%
GCATGACAATCTGAGAGGCA+AGG - chr7_2:70963569-70963588 Msa1073430:three_prime_UTR 50.0%
TAAGGCAGGCAATCAGGCTA+AGG - chr7_2:70964211-70964230 Msa1073430:three_prime_UTR 50.0%
!! TCAAGTGTTGAGGTGAGGGA+TGG + chr7_2:70964308-70964327 None:intergenic 50.0%
!! CAAGGCATTGGAGACATGAG+AGG + chr7_2:70964550-70964569 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr7_2:70964854-70964873 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr7_2:70964876-70964895 Msa1073430:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr7_2:70964877-70964896 Msa1073430:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr7_2:70964888-70964907 None:intergenic 50.0%
ATGCCACCTGCTGTACACAT+TGG - chr7_2:70965072-70965091 Msa1073430:CDS 50.0%
CATCCAATGTGTACAGCAGG+TGG + chr7_2:70965078-70965097 None:intergenic 50.0%
!! AATCCATCCCATGGTGCCAT+AGG + chr7_2:70965181-70965200 None:intergenic 50.0%
GACAGCTTCAGCTAAGGTTG+AGG + chr7_2:70965656-70965675 None:intergenic 50.0%
GGTGTAGATGTCCTGAAACC+GGG + chr7_2:70965923-70965942 None:intergenic 50.0%
TGAAACAGGCACCTCGATGT+TGG - chr7_2:70965981-70966000 Msa1073430:intron 50.0%
!! AAAAGCGCTCTGCTACGGTA+TGG - chr7_2:70966016-70966035 Msa1073430:intron 50.0%
CAGTGGCCAAAGGAAGATGA+TGG + chr7_2:70966342-70966361 None:intergenic 50.0%
CATCATCTTCCTTTGGCCAC+TGG - chr7_2:70966340-70966359 Msa1073430:intron 50.0%
ACTGGAATTCCAGTGGCCAA+AGG + chr7_2:70966352-70966371 None:intergenic 50.0%
GCGTTCTAGTGCTCTTCTAG+AGG + chr7_2:70966484-70966503 None:intergenic 50.0%
TGGAGAAGAATACCTTGGCC+GGG + chr7_2:70966541-70966560 None:intergenic 50.0%
! TATGCCTGTGTGACTCGGAT+TGG - chr7_2:70966583-70966602 Msa1073430:intron 50.0%
TTGTCCAATCCGAGTCACAC+AGG + chr7_2:70966590-70966609 None:intergenic 50.0%
! GGACAAGTTGCCACTTGACT+AGG - chr7_2:70966604-70966623 Msa1073430:intron 50.0%
GACTAGGCACTCTAACTGGA+TGG - chr7_2:70966620-70966639 Msa1073430:intron 50.0%
TCGGGAACTCACCTATCTCT+TGG - chr7_2:70966653-70966672 Msa1073430:intron 50.0%
TGAGGCAGAATCTTGGCATG+AGG - chr7_2:70966714-70966733 Msa1073430:intron 50.0%
TCTTGGCATGAGGTTCGACA+AGG - chr7_2:70966724-70966743 Msa1073430:intron 50.0%
CACATGGAACTGCTGAACCT+TGG - chr7_2:70967067-70967086 Msa1073430:CDS 50.0%
CATGGAACTGCTGAACCTTG+GGG - chr7_2:70967069-70967088 Msa1073430:CDS 50.0%
AACTGCTGAACCTTGGGGTT+GGG - chr7_2:70967074-70967093 Msa1073430:CDS 50.0%
TCTCAGACACACGCTGTCTG+GGG + chr7_2:70962890-70962909 None:intergenic 55.0%
GTTCTCAGACACACGCTGTC+TGG + chr7_2:70962892-70962911 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr7_2:70964889-70964908 Msa1073430:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr7_2:70964985-70965004 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr7_2:70964986-70965005 None:intergenic 55.0%
GGCTATGCCTATGGCACCAT+GGG - chr7_2:70965171-70965190 Msa1073430:intron 55.0%
ATGCCTATGGCACCATGGGA+TGG - chr7_2:70965175-70965194 Msa1073430:intron 55.0%
TACTGCTTCGTCACGTCCTG+CGG - chr7_2:70965538-70965557 Msa1073430:intron 55.0%
CTGTTGCTGCTGCCAAGCAT+TGG - chr7_2:70965822-70965841 Msa1073430:intron 55.0%
GTAGATGTCCTGAAACCGGG+AGG + chr7_2:70965920-70965939 None:intergenic 55.0%
! TTCTCGGCATTGAGGTGGCT+CGG - chr7_2:70966213-70966232 Msa1073430:intron 55.0%
CGCTATCTCAAGGGAGATCC+CGG - chr7_2:70966520-70966539 Msa1073430:intron 55.0%
TGTCTTGCGTTCCTCTGCTG+AGG - chr7_2:70966696-70966715 Msa1073430:intron 55.0%
CCAAGATTCTGCCTCAGCAG+AGG + chr7_2:70966710-70966729 None:intergenic 55.0%
CCTCTGCTGAGGCAGAATCT+TGG - chr7_2:70966707-70966726 Msa1073430:intron 55.0%
GAACTGCTGAACCTTGGGGT+TGG - chr7_2:70967073-70967092 Msa1073430:CDS 55.0%
ACTGCTGAACCTTGGGGTTG+GGG - chr7_2:70967075-70967094 Msa1073430:CDS 55.0%
CAGACACACGTTGTCTGGGG+TGG + chr7_2:70963011-70963030 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr7_2:70964843-70964862 Msa1073430:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7_2:70964958-70964977 Msa1073430:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr7_2:70964973-70964992 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr7_2:70964974-70964993 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr7_2:70964973-70964992 Msa1073430:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr7_2:70964974-70964993 Msa1073430:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr7_2:70964990-70965009 Msa1073430:intron 60.0%
GGGCTATGCCTATGGCACCA+TGG - chr7_2:70965170-70965189 Msa1073430:CDS 60.0%
ACTGCTTCGTCACGTCCTGC+GGG - chr7_2:70965539-70965558 Msa1073430:intron 60.0%
CGCAAGCGGCATGCCTGATT+TGG + chr7_2:70965944-70965963 None:intergenic 60.0%
CTGCTGAACCTTGGGGTTGG+GGG - chr7_2:70967076-70967095 Msa1073430:CDS 60.0%
CAGACACACGCTGTCTGGGG+TGG + chr7_2:70962887-70962906 None:intergenic 65.0%
! CGTTGTCTGGGGTGGTCGCA+CGG + chr7_2:70963003-70963022 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7_2:70964960-70964979 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr7_2:70964975-70964994 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr7_2:70964979-70964998 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7_2:70964980-70964999 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr7_2:70964991-70965010 Msa1073430:intron 65.0%
AGGGGATAGGGTGTACCCGC+AGG + chr7_2:70965557-70965576 None:intergenic 65.0%
! GAGGTGGCTCGGAGTGCCAA+TGG - chr7_2:70966224-70966243 Msa1073430:intron 65.0%
CTCAAGGGAGATCCCGGCCA+AGG - chr7_2:70966526-70966545 Msa1073430:intron 65.0%
AACAAGCGCCCCCAACCCCA+AGG + chr7_2:70967087-70967106 None:intergenic 65.0%
! CGCTGTCTGGGGTGGTCGCA+CGG + chr7_2:70962879-70962898 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70962472 70967152 70962472 ID=Msa1073430;Name=Msa1073430
chr7_2 mRNA 70962472 70967152 70962472 ID=Msa1073430-mRNA-1;Parent=Msa1073430;Name=Msa1073430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.6|0.66|1|0.2|0.16|6|1628|138
chr7_2 exon 70962472 70962713 70962472 ID=Msa1073430-mRNA-1:exon:16054;Parent=Msa1073430-mRNA-1
chr7_2 exon 70962879 70963979 70962879 ID=Msa1073430-mRNA-1:exon:16053;Parent=Msa1073430-mRNA-1
chr7_2 exon 70964064 70964332 70964064 ID=Msa1073430-mRNA-1:exon:16052;Parent=Msa1073430-mRNA-1
chr7_2 exon 70964997 70965189 70964997 ID=Msa1073430-mRNA-1:exon:16051;Parent=Msa1073430-mRNA-1
chr7_2 exon 70965368 70965418 70965368 ID=Msa1073430-mRNA-1:exon:16050;Parent=Msa1073430-mRNA-1
chr7_2 exon 70966964 70967152 70966964 ID=Msa1073430-mRNA-1:exon:16049;Parent=Msa1073430-mRNA-1
chr7_2 CDS 70966964 70967152 70966964 ID=Msa1073430-mRNA-1:cds;Parent=Msa1073430-mRNA-1
chr7_2 CDS 70965368 70965418 70965368 ID=Msa1073430-mRNA-1:cds;Parent=Msa1073430-mRNA-1
chr7_2 CDS 70965013 70965189 70965013 ID=Msa1073430-mRNA-1:cds;Parent=Msa1073430-mRNA-1
chr7_2 three_prime_UTR 70964997 70965012 70964997 ID=Msa1073430-mRNA-1:three_prime_utr;Parent=Msa1073430-mRNA-1
chr7_2 three_prime_UTR 70964064 70964332 70964064 ID=Msa1073430-mRNA-1:three_prime_utr;Parent=Msa1073430-mRNA-1
chr7_2 three_prime_UTR 70962879 70963979 70962879 ID=Msa1073430-mRNA-1:three_prime_utr;Parent=Msa1073430-mRNA-1
chr7_2 three_prime_UTR 70962472 70962713 70962472 ID=Msa1073430-mRNA-1:three_prime_utr;Parent=Msa1073430-mRNA-1
Gene Sequence

>Msa1073430

ACCGAACCGCTCCCTTTAACAGCTATTTCCACTTTCACAGTTTTACAAAGCACAAAGGTGAATCATTGTAAGTTCAAAGAACTTGAAGCTTCTTTGGATCATTCTAAAAAGTTGGGGATTCAACCACTTACAACATTTTCACTTTCTGTCGTTTTCTCTTGCCCAGATTACCTTCCTTCAGAGTGCAAGAAAATTAAGGCAGGCAATCAGGCTAAGGAAAGTGTGAATCTTGACACGAAGAATAGCTATTTGGTGGCCTTCTATGTCCGTCATTGCAACATAACTCTATGCCTTCTATGTCCATCATTGCAACATAACTCTATGCTTGAATGGTGTAGCTTGCTACTGAAACCCTCTCATGTCTCCAATGCCTTGCAGTATAATGTGAGAGTGGCATATCCACCTATTTCAGTATGA

Protein sequence

>Msa1073430

TEPLPLTAISTFTVLQSTKVNHCKFKELEASLDHSKKLGIQPLTTFSLSVVFSCPDYLPSECKKIKAGNQAKESVNLDTKNSYLVAFYVRHCNITLCLLCPSLQHNSMLEWCSLLLKPSHVSNALQYNVRVAYPPISV*