Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160460 | XP_003625012.1 | 99.793 | 482 | 1 | 0 | 1 | 482 | 1 | 482 | 0.0 | 992 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160460 | sp|Q2HW56|NOOT1_MEDTR | 99.793 | 482 | 1 | 0 | 1 | 482 | 1 | 482 | 0.0 | 992 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160460 | A0A1S2XRJ0 | 88.391 | 491 | 39 | 10 | 1 | 482 | 1 | 482 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1160460 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1113760 | Msa1160460 | 0.871313 | 7.517852e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160460 | MtrunA17_Chr7g0256321 | 99.793 | 482 | 1 | 0 | 1 | 482 | 1 | 482 | 0.0 | 992 |
| Msa1160460 | MtrunA17_Chr1g0171771 | 79.010 | 505 | 70 | 8 | 1 | 482 | 1 | 492 | 0.0 | 727 |
| Msa1160460 | MtrunA17_Chr5g0442661 | 33.967 | 368 | 213 | 10 | 24 | 386 | 66 | 408 | 1.61e-51 | 184 |
| Msa1160460 | MtrunA17_Chr2g0291741 | 34.896 | 384 | 223 | 9 | 6 | 386 | 44 | 403 | 5.69e-50 | 179 |
| Msa1160460 | MtrunA17_Chr2g0299621 | 30.108 | 372 | 217 | 7 | 24 | 388 | 65 | 400 | 7.32e-33 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160460 | AT2G41370.1 | 79.098 | 488 | 75 | 10 | 3 | 478 | 4 | 476 | 0.0 | 746 |
| Msa1160460 | AT3G57130.1 | 75.625 | 480 | 82 | 8 | 2 | 476 | 4 | 453 | 0.0 | 712 |
| Msa1160460 | AT3G57130.2 | 75.301 | 166 | 33 | 2 | 2 | 162 | 4 | 166 | 2.69e-83 | 255 |
| Msa1160460 | AT4G19660.1 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 5.93e-46 | 169 |
| Msa1160460 | AT4G19660.2 | 31.880 | 367 | 208 | 7 | 25 | 386 | 56 | 385 | 9.21e-46 | 169 |
| Msa1160460 | AT5G45110.1 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 5.74e-42 | 157 |
| Msa1160460 | AT5G45110.2 | 30.990 | 384 | 234 | 8 | 6 | 386 | 40 | 395 | 8.24e-42 | 156 |
| Msa1160460 | AT1G64280.1 | 28.852 | 357 | 222 | 6 | 32 | 386 | 73 | 399 | 1.76e-32 | 130 |
| Msa1160460 | AT4G26120.1 | 29.363 | 361 | 210 | 9 | 33 | 386 | 76 | 398 | 3.03e-31 | 127 |
| Msa1160460 | AT4G26120.2 | 29.363 | 361 | 210 | 9 | 33 | 386 | 77 | 399 | 3.16e-31 | 127 |
Find 155 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATAGAAAATCTGAAGTT+AGG | 0.230108 | 7_4:+50368942 | None:intergenic |
| GATGCGAAGCTCTTCGATTT+TGG | 0.235029 | 7_4:+50369378 | None:intergenic |
| TGTGGGCCAGACCCACCTTC+TGG | 0.259914 | 7_4:-50371266 | Msa1160460:CDS |
| GACATGATTGTTTAGGGTTA+TGG | 0.282175 | 7_4:+50371446 | None:intergenic |
| TTCAAGGGACATGATTGTTT+AGG | 0.311764 | 7_4:+50371439 | None:intergenic |
| AAACACAACCTTAGTTTGTT+TGG | 0.315039 | 7_4:+50368887 | None:intergenic |
| TCAAGGGACATGATTGTTTA+GGG | 0.321591 | 7_4:+50371440 | None:intergenic |
| AGATGAATTGAAATAATAAA+AGG | 0.323094 | 7_4:+50367996 | None:intergenic |
| ATGATGGTGGTGAGGCATTA+AGG | 0.333824 | 7_4:+50369333 | None:intergenic |
| CATTAAGGAGCGGCGTGATA+TGG | 0.335393 | 7_4:+50369348 | None:intergenic |
| AACAAGACATGCACCAACTA+TGG | 0.344045 | 7_4:-50369480 | Msa1160460:CDS |
| AATGGTGACTAGTATTTGAT+AGG | 0.346077 | 7_4:+50368224 | None:intergenic |
| ATAAAAGGAAGACAATAAAT+AGG | 0.353356 | 7_4:+50368011 | None:intergenic |
| CTAATGCTTCATCAAGGTTT+AGG | 0.354695 | 7_4:+50369188 | None:intergenic |
| AAACAAACTAAGGTTGTGTT+TGG | 0.362323 | 7_4:-50368885 | Msa1160460:CDS |
| GGAGATGGTCTCACCGGATA+TGG | 0.367743 | 7_4:-50369044 | Msa1160460:CDS |
| TGCAGCCGATGTTAACTTCC+CGG | 0.370396 | 7_4:-50369104 | Msa1160460:CDS |
| CAACCACGGTCACCACAATT+AGG | 0.374903 | 7_4:+50371089 | None:intergenic |
| AACTTCCCGGCTGGTCCAAC+TGG | 0.385231 | 7_4:-50369091 | Msa1160460:CDS |
| CCATCAACTGTTCTCACATT+CGG | 0.388403 | 7_4:+50368992 | None:intergenic |
| GGATGCATGGAGGAGACTTT+AGG | 0.401342 | 7_4:-50368114 | Msa1160460:three_prime_UTR |
| CATCAACTGTTCTCACATTC+GGG | 0.411634 | 7_4:+50368993 | None:intergenic |
| CTATTCAAAGGTGCTGTCCC+TGG | 0.412212 | 7_4:-50368926 | Msa1160460:CDS |
| CTGCAATTCTCAACGGCATA+AGG | 0.421725 | 7_4:+50369160 | None:intergenic |
| AGAAGTTGTGAAAGCCTTGT+TGG | 0.425240 | 7_4:-50369134 | Msa1160460:CDS |
| TGTTATTGTTGTTGTGGCTA+TGG | 0.425330 | 7_4:+50368729 | None:intergenic |
| GAGATCTTAGTGAGTCTTCA+AGG | 0.426128 | 7_4:+50371423 | None:intergenic |
| GGGTTGACTCGGTTTCCTGA+TGG | 0.427587 | 7_4:+50371236 | None:intergenic |
| CTATGAGACCGCACTTCAAA+TGG | 0.427945 | 7_4:+50368206 | None:intergenic |
| ATTGAAAATAATTGAGAAAG+TGG | 0.429644 | 7_4:+50367962 | None:intergenic |
| GAATAGAAAATCTGAAGTTA+GGG | 0.433840 | 7_4:+50368943 | None:intergenic |
| TCGTAACCAACTGAGTTAAC+TGG | 0.436058 | 7_4:+50371185 | None:intergenic |
| AGTACTTCAAGAATGGATTC+TGG | 0.438677 | 7_4:-50368659 | Msa1160460:CDS |
| GGTTGACTCGGTTTCCTGAT+GGG | 0.440013 | 7_4:+50371237 | None:intergenic |
| AACACCAGACCTAGCTGAAC+CGG | 0.442219 | 7_4:+50371211 | None:intergenic |
| AGCAATACAGCCACCATATC+CGG | 0.442702 | 7_4:+50369031 | None:intergenic |
| TTCTTCAGAAAATTCTTCTG+TGG | 0.443436 | 7_4:-50371284 | Msa1160460:CDS |
| CATTTGAAGTGCGGTCTCAT+AGG | 0.445556 | 7_4:-50368205 | Msa1160460:three_prime_UTR |
| CTAGTGAAACTCATGGTAAT+GGG | 0.452837 | 7_4:-50369217 | Msa1160460:CDS |
| GCTAGTGAAACTCATGGTAA+TGG | 0.456091 | 7_4:-50369218 | Msa1160460:CDS |
| TCTAATCCAGAAGGTGGGTC+TGG | 0.456640 | 7_4:+50371260 | None:intergenic |
| GGAAAGAAAGAAAGAAAGAA+AGG | 0.459540 | 7_4:+50371579 | None:intergenic |
| ATCACATTTCCCATCCCAAC+AGG | 0.461625 | 7_4:-50371658 | None:intergenic |
| GGTTCAATGTGAGTTAATCC+AGG | 0.466615 | 7_4:+50368908 | None:intergenic |
| GTCTTCAAGGTCGGCTGCAG+CGG | 0.467472 | 7_4:+50369288 | None:intergenic |
| GTTATACCAGTTAACTCAGT+TGG | 0.472537 | 7_4:-50371191 | Msa1160460:CDS |
| TCCCACCTTGTAGCAAAATC+AGG | 0.472615 | 7_4:-50369448 | Msa1160460:CDS |
| AATCCATGTTATTGTTGTTG+TGG | 0.476042 | 7_4:+50368723 | None:intergenic |
| TCAAATGAGTACTTCAAGAA+TGG | 0.477419 | 7_4:-50368666 | Msa1160460:CDS |
| GATTGAAAGAGAGAGAGGTT+TGG | 0.480640 | 7_4:+50371477 | None:intergenic |
| TTGAAAATAATTGAGAAAGT+GGG | 0.483260 | 7_4:+50367963 | None:intergenic |
| GGTCGGCTGCAGCGGTGAGA+TGG | 0.490105 | 7_4:+50369296 | None:intergenic |
| CTTGTTATGTCAAGGGAAGA+AGG | 0.491332 | 7_4:-50368842 | Msa1160460:CDS |
| GCCGATGTTAACTTCCCGGC+TGG | 0.496241 | 7_4:-50369100 | Msa1160460:CDS |
| AGTTGATGGTGTTACACCCT+TGG | 0.497853 | 7_4:-50368978 | Msa1160460:CDS |
| GTGCGGTCTCATAGGAGAAT+GGG | 0.501672 | 7_4:-50368197 | Msa1160460:three_prime_UTR |
| ATTGTGGTGACCGTGGTTGT+TGG | 0.504368 | 7_4:-50371085 | Msa1160460:CDS |
| TTTCCTAATCATATAAAAGA+TGG | 0.505963 | 7_4:+50367924 | None:intergenic |
| TATGGAGGGGTATACCTGTT+GGG | 0.509746 | 7_4:+50371644 | None:intergenic |
| ACAACAATAACATGGATTCA+AGG | 0.512387 | 7_4:-50368718 | Msa1160460:CDS |
| TGAGGGATTCTTATATATGG+AGG | 0.512950 | 7_4:+50371629 | None:intergenic |
| TTATGGATTGAAAGAGAGAG+AGG | 0.513241 | 7_4:+50371472 | None:intergenic |
| TGAAAATAATTGAGAAAGTG+GGG | 0.516522 | 7_4:+50367964 | None:intergenic |
| TCTTCAGAAAATTCTTCTGT+GGG | 0.516918 | 7_4:-50371283 | Msa1160460:CDS |
| ACGCTTGTCCGTTGATGAGA+AGG | 0.520055 | 7_4:+50371381 | None:intergenic |
| CCGAATGTGAGAACAGTTGA+TGG | 0.521071 | 7_4:-50368992 | Msa1160460:CDS |
| CCTTCTGGATTAGACCCATC+AGG | 0.521120 | 7_4:-50371251 | Msa1160460:CDS |
| ACATTGAACCAAACAAACTA+AGG | 0.522706 | 7_4:-50368895 | Msa1160460:CDS |
| GCTACATATTGCAGCGGAGA+TGG | 0.524554 | 7_4:-50369059 | Msa1160460:CDS |
| GAGGGATTCTTATATATGGA+GGG | 0.525055 | 7_4:+50371630 | None:intergenic |
| AGTGCGGTCTCATAGGAGAA+TGG | 0.526381 | 7_4:-50368198 | Msa1160460:three_prime_UTR |
| TGCTACAAGGTGGGAACATG+TGG | 0.531996 | 7_4:+50369456 | None:intergenic |
| CTGCAGCTCTTGTTATGTCA+AGG | 0.533449 | 7_4:-50368850 | Msa1160460:CDS |
| TAGGGTTCTTAGAATGTCCA+AGG | 0.536805 | 7_4:+50368961 | None:intergenic |
| CCATCCGGTTCAGCTAGGTC+TGG | 0.539454 | 7_4:-50371215 | Msa1160460:CDS |
| GGAAACCGAGTCAACCCATC+CGG | 0.539988 | 7_4:-50371230 | Msa1160460:CDS |
| GGTCGTGATGGTGAGGATGA+TGG | 0.543235 | 7_4:+50369317 | None:intergenic |
| TACTTAAACCTTCTCATCAA+CGG | 0.546164 | 7_4:-50371389 | Msa1160460:CDS |
| ATGTATCATCATCACTCTCA+TGG | 0.548599 | 7_4:-50368596 | Msa1160460:CDS |
| AGGTTGGTGTATCTTAACCT+TGG | 0.550322 | 7_4:-50368698 | Msa1160460:CDS |
| TGATGTCTTGATGATGATGA+TGG | 0.551151 | 7_4:+50371555 | None:intergenic |
| GAGGGGTATACCTGTTGGGA+TGG | 0.551185 | 7_4:+50371648 | None:intergenic |
| CTTGCAGCCGCTAGATACTT+CGG | 0.551437 | 7_4:-50371020 | Msa1160460:CDS |
| TCACATTCGGGTCAGCGTGA+TGG | 0.551477 | 7_4:+50369005 | None:intergenic |
| CTGAACCGGATGGGTTGACT+CGG | 0.552813 | 7_4:+50371225 | None:intergenic |
| TATTGTTGTTGTGGCTATGG+TGG | 0.553140 | 7_4:+50368732 | None:intergenic |
| CAATAACATGGATTCAAGGT+TGG | 0.554832 | 7_4:-50368714 | Msa1160460:CDS |
| AGGGGTATACCTGTTGGGAT+GGG | 0.555350 | 7_4:+50371649 | None:intergenic |
| TGCAGCGGAGATGGTCTCAC+CGG | 0.562963 | 7_4:-50369050 | Msa1160460:CDS |
| GTGATGATGATAATACTCAC+AGG | 0.563231 | 7_4:-50368637 | Msa1160460:CDS |
| GAAAGAAAGAAAGAAAGGAA+AGG | 0.567131 | 7_4:+50371584 | None:intergenic |
| ATATGGAGGGGTATACCTGT+TGG | 0.567656 | 7_4:+50371643 | None:intergenic |
| AAACTCATGGTAATGGGAGA+AGG | 0.568060 | 7_4:-50369211 | Msa1160460:CDS |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 7_4:-50370991 | Msa1160460:intron |
| GGAAGACAATAAATAGGCCG+TGG | 0.570163 | 7_4:+50368017 | None:intergenic |
| GTAATGCTAATGCTTCATCA+AGG | 0.571238 | 7_4:+50369182 | None:intergenic |
| GTTCAATGTGAGTTAATCCA+GGG | 0.571864 | 7_4:+50368909 | None:intergenic |
| GTGAAAGCCTTGTTGGAACT+CGG | 0.572326 | 7_4:-50369127 | Msa1160460:CDS |
| ATGCTTCAGTTTCTGTACAG+TGG | 0.576559 | 7_4:-50371149 | Msa1160460:CDS |
| GGCCTAGGCTCATGTTTCTG+AGG | 0.578140 | 7_4:+50371110 | None:intergenic |
| TTTCATTACATCTTCAATCG+AGG | 0.580013 | 7_4:+50369522 | None:intergenic |
| CTCGACGTCTGAGGAGTCGA+GGG | 0.584832 | 7_4:+50369240 | None:intergenic |
| CGGTCACCACAATTAGGCCT+AGG | 0.584959 | 7_4:+50371095 | None:intergenic |
| TGCAGCTCTTGTTATGTCAA+GGG | 0.587236 | 7_4:-50368849 | Msa1160460:CDS |
| AAGAGCAAGATCAACGGCTG+AGG | 0.588511 | 7_4:+50371049 | None:intergenic |
| TTCTCTACTGCAATTCTCAA+CGG | 0.590267 | 7_4:+50369153 | None:intergenic |
| TCAACCCATCCGGTTCAGCT+AGG | 0.592108 | 7_4:-50371220 | Msa1160460:CDS |
| CTAGGATGCATCTGTGTGCG+TGG | 0.593852 | 7_4:+50371321 | None:intergenic |
| GTAACTACTCTTACATGCAA+AGG | 0.595237 | 7_4:+50368552 | None:intergenic |
| TAAGGAGCGGCGTGATATGG+AGG | 0.595576 | 7_4:+50369351 | None:intergenic |
| GGGAACATGTGGTCCATAGT+TGG | 0.598309 | 7_4:+50369467 | None:intergenic |
| GATGGGTCTAATCCAGAAGG+TGG | 0.598545 | 7_4:+50371254 | None:intergenic |
| ACAGAAACAACTAGCGAGCA+TGG | 0.599468 | 7_4:-50369554 | Msa1160460:intron |
| GAAAATAATTGAGAAAGTGG+GGG | 0.601706 | 7_4:+50367965 | None:intergenic |
| AGTTAACTCAGTTGGTTACG+AGG | 0.607152 | 7_4:-50371183 | Msa1160460:CDS |
| GATGGTCTCACCGGATATGG+TGG | 0.607668 | 7_4:-50369041 | Msa1160460:CDS |
| AGGGATTCTTATATATGGAG+GGG | 0.608413 | 7_4:+50371631 | None:intergenic |
| TGGAATGAAAGGATGCATGG+AGG | 0.610232 | 7_4:-50368124 | Msa1160460:three_prime_UTR |
| CAGCGGTGAGATGGTCGTGA+TGG | 0.610483 | 7_4:+50369305 | None:intergenic |
| CCAGACCTAGCTGAACCGGA+TGG | 0.611566 | 7_4:+50371215 | None:intergenic |
| TTCCTCAGAAACATGAGCCT+AGG | 0.612474 | 7_4:-50371112 | Msa1160460:CDS |
| GCTCGACGTCTGAGGAGTCG+AGG | 0.612628 | 7_4:+50369239 | None:intergenic |
| AGATCTTAGTGAGTCTTCAA+GGG | 0.612991 | 7_4:+50371424 | None:intergenic |
| TTTCACTAGCTCGACGTCTG+AGG | 0.613557 | 7_4:+50369231 | None:intergenic |
| AGAAGAGACTTCTTGCTGCT+AGG | 0.618081 | 7_4:+50371303 | None:intergenic |
| TCTTCATTCATATTATGATG+AGG | 0.620406 | 7_4:+50368758 | None:intergenic |
| CCTGATGGGTCTAATCCAGA+AGG | 0.623455 | 7_4:+50371251 | None:intergenic |
| CAGACCTAGCTGAACCGGAT+GGG | 0.623790 | 7_4:+50371216 | None:intergenic |
| TGGTGAGGATGATGGTGGTG+AGG | 0.629304 | 7_4:+50369325 | None:intergenic |
| ATGAGAGTGATGATGATACA+TGG | 0.631388 | 7_4:+50368598 | None:intergenic |
| CGTGATGGTGAGGATGATGG+TGG | 0.631651 | 7_4:+50369320 | None:intergenic |
| CGTCGAGCTAGTGAAACTCA+TGG | 0.635542 | 7_4:-50369224 | Msa1160460:CDS |
| TGTCTTGATGATGATGATGG+TGG | 0.639879 | 7_4:+50371558 | None:intergenic |
| TAGCCACAACAACAATAACA+TGG | 0.640552 | 7_4:-50368726 | Msa1160460:CDS |
| CTGATGTGAAGCTAATACCA+CGG | 0.642043 | 7_4:-50368034 | Msa1160460:three_prime_UTR |
| CATGAGCCTAGGCCTAATTG+TGG | 0.645604 | 7_4:-50371101 | Msa1160460:CDS |
| GGCTGCACCGAGTTCCAACA+AGG | 0.646855 | 7_4:+50369120 | None:intergenic |
| TCATTTGAGTATTAGCACCA+AGG | 0.650291 | 7_4:+50368681 | None:intergenic |
| GTGAGATGGTCGTGATGGTG+AGG | 0.655300 | 7_4:+50369310 | None:intergenic |
| ATGGGTCTAATCCAGAAGGT+GGG | 0.656727 | 7_4:+50371255 | None:intergenic |
| ATCTCCGCTGCAATATGTAG+CGG | 0.657846 | 7_4:+50369061 | None:intergenic |
| AGTATCAAGAGCAAGATCAA+CGG | 0.660445 | 7_4:+50371043 | None:intergenic |
| AGGGTTCTTAGAATGTCCAA+GGG | 0.662287 | 7_4:+50368962 | None:intergenic |
| TTCAACTCCGAAGTATCTAG+CGG | 0.662542 | 7_4:+50371013 | None:intergenic |
| AACTCCGCTACATATTGCAG+CGG | 0.669845 | 7_4:-50369065 | Msa1160460:CDS |
| GGTGGTGAGGCATTAAGGAG+CGG | 0.674544 | 7_4:+50369338 | None:intergenic |
| ACTAGTCACCATTTGAAGTG+CGG | 0.675361 | 7_4:-50368214 | Msa1160460:three_prime_UTR |
| AATGTGTATGCCAACAACCA+CGG | 0.675672 | 7_4:+50371075 | None:intergenic |
| AAAATAATTGAGAAAGTGGG+GGG | 0.680558 | 7_4:+50367966 | None:intergenic |
| GGAGAATGGGATAAGAGACA+AGG | 0.681472 | 7_4:-50368184 | Msa1160460:three_prime_UTR |
| TGATGATGATAATACTCACA+GGG | 0.685503 | 7_4:-50368636 | Msa1160460:CDS |
| AGGCCTAATTGTGGTGACCG+TGG | 0.688201 | 7_4:-50371092 | Msa1160460:CDS |
| ACCAGCCGGGAAGTTAACAT+CGG | 0.692763 | 7_4:+50369099 | None:intergenic |
| TTGAAGACCAGAAAATCCGT+CGG | 0.696642 | 7_4:-50369273 | Msa1160460:CDS |
| GAAACAACTAGCGAGCATGG+TGG | 0.736366 | 7_4:-50369551 | Msa1160460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATTAATTTTAATT+AGG | + | chr7_4:50371035-50371054 | None:intergenic | 0.0% |
| !!! | TTTTTTTATTTTTTTATTTT+TGG | - | chr7_4:50371308-50371327 | Msa1160460:CDS | 0.0% |
| !!! | GTATTAATTTTTTAATGAAT+AGG | - | chr7_4:50368915-50368934 | Msa1160460:CDS | 10.0% |
| !!! | TTTATAGGAATTTTTTTTAT+AGG | - | chr7_4:50369896-50369915 | Msa1160460:intron | 10.0% |
| !!! | ATTTTTTTATTTTTGGTTTT+AGG | - | chr7_4:50371315-50371334 | Msa1160460:CDS | 10.0% |
| !! | AAAACAATAATAAAGAGAAA+AGG | + | chr7_4:50368609-50368628 | None:intergenic | 15.0% |
| !!! | ACTCTAATTTTTTTATGAAA+TGG | - | chr7_4:50368854-50368873 | Msa1160460:CDS | 15.0% |
| !!! | CTCTAATTTTTTTATGAAAT+GGG | - | chr7_4:50368855-50368874 | Msa1160460:CDS | 15.0% |
| !!! | GTTATTTCAATTACAATTAA+TGG | - | chr7_4:50371094-50371113 | Msa1160460:CDS | 15.0% |
| !!! | AACTGATTTTTTTTCTATTT+TGG | - | chr7_4:50371257-50371276 | Msa1160460:CDS | 15.0% |
| !!! | TTTTTATTTTTTGGAATGAA+AGG | - | chr7_4:50371427-50371446 | Msa1160460:CDS | 15.0% |
| !! | AGATGAATTGAAATAATAAA+AGG | + | chr7_4:50371569-50371588 | None:intergenic | 15.0% |
| !!! | GTGATTGTTTTTTTTTTTGA+GGG | + | chr7_4:50367953-50367972 | None:intergenic | 20.0% |
| !!! | TGTGATTGTTTTTTTTTTTG+AGG | + | chr7_4:50367954-50367973 | None:intergenic | 20.0% |
| !! | AAAAGAATCAATTAATGTGA+CGG | + | chr7_4:50369232-50369251 | None:intergenic | 20.0% |
| !! | ATAAACACATTGAAAATTAG+TGG | + | chr7_4:50369761-50369780 | None:intergenic | 20.0% |
| !!! | TAATTTTCAATGTGTTTATG+TGG | - | chr7_4:50369762-50369781 | Msa1160460:intron | 20.0% |
| !!! | AACATTGATGCATTTTTTAT+AGG | - | chr7_4:50369881-50369900 | Msa1160460:intron | 20.0% |
| !! | ATAAAAGGAAGACAATAAAT+AGG | + | chr7_4:50371554-50371573 | None:intergenic | 20.0% |
| !! | TTGAAAATAATTGAGAAAGT+GGG | + | chr7_4:50371602-50371621 | None:intergenic | 20.0% |
| !! | ATTGAAAATAATTGAGAAAG+TGG | + | chr7_4:50371603-50371622 | None:intergenic | 20.0% |
| !! | TTTCCTAATCATATAAAAGA+TGG | + | chr7_4:50371641-50371660 | None:intergenic | 20.0% |
| !!! | ATCTTTTATATGATTAGGAA+AGG | - | chr7_4:50371640-50371659 | Msa1160460:five_prime_UTR | 20.0% |
| !!! | TTTTGAGGGATTCTTATATA+TGG | + | chr7_4:50367939-50367958 | None:intergenic | 25.0% |
| ! | ACAATAATAAAGAGAAAAGG+AGG | + | chr7_4:50368606-50368625 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGAAATGGGTG+AGG | - | chr7_4:50368860-50368879 | Msa1160460:CDS | 25.0% |
| ! | TCAACAATAGATAGATAACT+TGG | - | chr7_4:50369017-50369036 | Msa1160460:CDS | 25.0% |
| ! | GACAGTAGAATTAATTAATG+AGG | + | chr7_4:50369132-50369151 | None:intergenic | 25.0% |
| ! | TATGTGTTTATCTGTCTTTA+CGG | + | chr7_4:50369198-50369217 | None:intergenic | 25.0% |
| ! | ATTTAGAAACTCATTCTAGT+GGG | + | chr7_4:50369377-50369396 | None:intergenic | 25.0% |
| ! | AATTTAGAAACTCATTCTAG+TGG | + | chr7_4:50369378-50369397 | None:intergenic | 25.0% |
| !!! | ATTTGGTCTTAAAGAAGAAA+AGG | - | chr7_4:50369484-50369503 | Msa1160460:CDS | 25.0% |
| !!! | TTTGGTCTTAAAGAAGAAAA+GGG | - | chr7_4:50369485-50369504 | Msa1160460:CDS | 25.0% |
| ! | AAAAACTACATTTCATGCAA+GGG | + | chr7_4:50369633-50369652 | None:intergenic | 25.0% |
| ! | AAAAAACTACATTTCATGCA+AGG | + | chr7_4:50369634-50369653 | None:intergenic | 25.0% |
| ! | GCTATAACAATCTAAACTAT+AGG | - | chr7_4:50369680-50369699 | Msa1160460:intron | 25.0% |
| !! | TCTTAATCATGATTGTGTTT+TGG | + | chr7_4:50369788-50369807 | None:intergenic | 25.0% |
| !!! | CATATATAATAGCATTGATG+CGG | + | chr7_4:50369811-50369830 | None:intergenic | 25.0% |
| !! | CTATTTAAAACCTAATTGCT+TGG | - | chr7_4:50369839-50369858 | Msa1160460:intron | 25.0% |
| !!! | TTTTGGCTATGATATCAATA+GGG | + | chr7_4:50370170-50370189 | None:intergenic | 25.0% |
| !!! | ATTTTGGCTATGATATCAAT+AGG | + | chr7_4:50370171-50370190 | None:intergenic | 25.0% |
| !! | GAATAGAAAATCTGAAGTTA+GGG | + | chr7_4:50370622-50370641 | None:intergenic | 25.0% |
| !! | TGAATAGAAAATCTGAAGTT+AGG | + | chr7_4:50370623-50370642 | None:intergenic | 25.0% |
| !! | ACTTCAGATTTTCTATTCAA+AGG | - | chr7_4:50370624-50370643 | Msa1160460:intron | 25.0% |
| ! | TCTTCATTCATATTATGATG+AGG | + | chr7_4:50370807-50370826 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATGATATATAG+TGG | - | chr7_4:50371212-50371231 | Msa1160460:CDS | 25.0% |
| ! | TGAAAATAATTGAGAAAGTG+GGG | + | chr7_4:50371601-50371620 | None:intergenic | 25.0% |
| !! | CTACCATCTTTTATATGATT+AGG | - | chr7_4:50371635-50371654 | Msa1160460:five_prime_UTR | 25.0% |
| GAAAGAAAGAAAGAAAGGAA+AGG | + | chr7_4:50367981-50368000 | None:intergenic | 30.0% | |
| GGAAAGAAAGAAAGAAAGAA+AGG | + | chr7_4:50367986-50368005 | None:intergenic | 30.0% | |
| !! | GTTTAGGGTTATGGTTTTTA+TGG | + | chr7_4:50368110-50368129 | None:intergenic | 30.0% |
| TACTTAAACCTTCTCATCAA+CGG | - | chr7_4:50368173-50368192 | Msa1160460:three_prime_UTR | 30.0% | |
| TTCTTCAGAAAATTCTTCTG+TGG | - | chr7_4:50368278-50368297 | Msa1160460:intron | 30.0% | |
| TCTTCAGAAAATTCTTCTGT+GGG | - | chr7_4:50368279-50368298 | Msa1160460:intron | 30.0% | |
| ! | TTCTCTACTACACTTGTTAA+TGG | + | chr7_4:50368634-50368653 | None:intergenic | 30.0% |
| TCTATCTATTGTTGATCGAT+GGG | + | chr7_4:50369012-50369031 | None:intergenic | 30.0% | |
| ATCTATCTATTGTTGATCGA+TGG | + | chr7_4:50369013-50369032 | None:intergenic | 30.0% | |
| CAATAGATAGATAACTTGGT+TGG | - | chr7_4:50369021-50369040 | Msa1160460:CDS | 30.0% | |
| ATTTCATGTCATGTATGTAC+TGG | - | chr7_4:50369301-50369320 | Msa1160460:CDS | 30.0% | |
| ATGTATGTACTGGAAATTAG+AGG | - | chr7_4:50369311-50369330 | Msa1160460:CDS | 30.0% | |
| TGAGGAAAGTGAATGTATTT+GGG | + | chr7_4:50369465-50369484 | None:intergenic | 30.0% | |
| ATGAGGAAAGTGAATGTATT+TGG | + | chr7_4:50369466-50369485 | None:intergenic | 30.0% | |
| ATACATTCACTTTCCTCATT+TGG | - | chr7_4:50369467-50369486 | Msa1160460:CDS | 30.0% | |
| !! | TTCTTCTTTAAGACCAAATG+AGG | + | chr7_4:50369483-50369502 | None:intergenic | 30.0% |
| TCTCTTTCATTTACCAAATG+AGG | - | chr7_4:50369524-50369543 | Msa1160460:CDS | 30.0% | |
| TTTCATTACATCTTCAATCG+AGG | + | chr7_4:50370043-50370062 | None:intergenic | 30.0% | |
| ACATTGAACCAAACAAACTA+AGG | - | chr7_4:50370667-50370686 | Msa1160460:intron | 30.0% | |
| !! | AAACACAACCTTAGTTTGTT+TGG | + | chr7_4:50370678-50370697 | None:intergenic | 30.0% |
| AAACAAACTAAGGTTGTGTT+TGG | - | chr7_4:50370677-50370696 | Msa1160460:intron | 30.0% | |
| ! | AATCCATGTTATTGTTGTTG+TGG | + | chr7_4:50370842-50370861 | None:intergenic | 30.0% |
| ACAACAATAACATGGATTCA+AGG | - | chr7_4:50370844-50370863 | Msa1160460:intron | 30.0% | |
| TCAAATGAGTACTTCAAGAA+TGG | - | chr7_4:50370896-50370915 | Msa1160460:intron | 30.0% | |
| ! | TGATGATGATAATACTCACA+GGG | - | chr7_4:50370926-50370945 | Msa1160460:intron | 30.0% |
| ! | TTACAATTAATGGACCATGA+TGG | - | chr7_4:50371104-50371123 | Msa1160460:CDS | 30.0% |
| ! | CATGATGGAAAATTTAACGA+GGG | - | chr7_4:50371119-50371138 | Msa1160460:CDS | 30.0% |
| ! | ATGATGGAAAATTTAACGAG+GGG | - | chr7_4:50371120-50371139 | Msa1160460:CDS | 30.0% |
| AATGGTGACTAGTATTTGAT+AGG | + | chr7_4:50371341-50371360 | None:intergenic | 30.0% | |
| AAAATAATTGAGAAAGTGGG+GGG | + | chr7_4:50371599-50371618 | None:intergenic | 30.0% | |
| GAAAATAATTGAGAAAGTGG+GGG | + | chr7_4:50371600-50371619 | None:intergenic | 30.0% | |
| AGGGATTCTTATATATGGAG+GGG | + | chr7_4:50367934-50367953 | None:intergenic | 35.0% | |
| GAGGGATTCTTATATATGGA+GGG | + | chr7_4:50367935-50367954 | None:intergenic | 35.0% | |
| TGAGGGATTCTTATATATGG+AGG | + | chr7_4:50367936-50367955 | None:intergenic | 35.0% | |
| !! | TGATGTCTTGATGATGATGA+TGG | + | chr7_4:50368010-50368029 | None:intergenic | 35.0% |
| ! | TTATGGATTGAAAGAGAGAG+AGG | + | chr7_4:50368093-50368112 | None:intergenic | 35.0% |
| ! | GACATGATTGTTTAGGGTTA+TGG | + | chr7_4:50368119-50368138 | None:intergenic | 35.0% |
| TCAAGGGACATGATTGTTTA+GGG | + | chr7_4:50368125-50368144 | None:intergenic | 35.0% | |
| TTCAAGGGACATGATTGTTT+AGG | + | chr7_4:50368126-50368145 | None:intergenic | 35.0% | |
| AGATCTTAGTGAGTCTTCAA+GGG | + | chr7_4:50368141-50368160 | None:intergenic | 35.0% | |
| GTTATACCAGTTAACTCAGT+TGG | - | chr7_4:50368371-50368390 | Msa1160460:intron | 35.0% | |
| AGTATCAAGAGCAAGATCAA+CGG | + | chr7_4:50368522-50368541 | None:intergenic | 35.0% | |
| !!! | TGACCAGTCGTATGTTTTTT+GGG | - | chr7_4:50368728-50368747 | Msa1160460:CDS | 35.0% |
| !!! | TCGTATGTTTTTTGGGTCTT+GGG | - | chr7_4:50368735-50368754 | Msa1160460:CDS | 35.0% |
| !!! | TTTCCACAGTTACTGGTTTT+TGG | - | chr7_4:50368760-50368779 | Msa1160460:CDS | 35.0% |
| !!! | TTCCACAGTTACTGGTTTTT+GGG | - | chr7_4:50368761-50368780 | Msa1160460:CDS | 35.0% |
| ! | GAGGAATGAGAATGAGATTT+TGG | - | chr7_4:50368879-50368898 | Msa1160460:CDS | 35.0% |
| !! | TGAGAATGAGATTTTGGTCT+AGG | - | chr7_4:50368885-50368904 | Msa1160460:CDS | 35.0% |
| ! | ACATGACAGTTTTCTCGATT+TGG | - | chr7_4:50369341-50369360 | Msa1160460:CDS | 35.0% |
| GAAAGAGAGCTAGACATAAA+TGG | + | chr7_4:50369512-50369531 | None:intergenic | 35.0% | |
| !!! | GTGGTTTTGTTATCCTCATT+TGG | + | chr7_4:50369540-50369559 | None:intergenic | 35.0% |
| CATTAATACAACTGCGATTG+AGG | - | chr7_4:50369728-50369747 | Msa1160460:intron | 35.0% | |
| CGATTTCATTCCAAGCAATT+AGG | + | chr7_4:50369852-50369871 | None:intergenic | 35.0% | |
| !!! | TGTCTTGTTTTCTTGATGCT+AGG | + | chr7_4:50370071-50370090 | None:intergenic | 35.0% |
| ! | ATGTTTTGCAAGTACTTCTG+GGG | + | chr7_4:50370145-50370164 | None:intergenic | 35.0% |
| ! | GATGTTTTGCAAGTACTTCT+GGG | + | chr7_4:50370146-50370165 | None:intergenic | 35.0% |
| ! | AGATGTTTTGCAAGTACTTC+TGG | + | chr7_4:50370147-50370166 | None:intergenic | 35.0% |
| CTAGTGAAACTCATGGTAAT+GGG | - | chr7_4:50370345-50370364 | Msa1160460:intron | 35.0% | |
| CTAATGCTTCATCAAGGTTT+AGG | + | chr7_4:50370377-50370396 | None:intergenic | 35.0% | |
| GTAATGCTAATGCTTCATCA+AGG | + | chr7_4:50370383-50370402 | None:intergenic | 35.0% | |
| TTCTCTACTGCAATTCTCAA+CGG | + | chr7_4:50370412-50370431 | None:intergenic | 35.0% | |
| GTTCAATGTGAGTTAATCCA+GGG | + | chr7_4:50370656-50370675 | None:intergenic | 35.0% | |
| ! | TGTTATTGTTGTTGTGGCTA+TGG | + | chr7_4:50370836-50370855 | None:intergenic | 35.0% |
| TAGCCACAACAACAATAACA+TGG | - | chr7_4:50370836-50370855 | Msa1160460:intron | 35.0% | |
| CAATAACATGGATTCAAGGT+TGG | - | chr7_4:50370848-50370867 | Msa1160460:intron | 35.0% | |
| TCATTTGAGTATTAGCACCA+AGG | + | chr7_4:50370884-50370903 | None:intergenic | 35.0% | |
| ! | AGTACTTCAAGAATGGATTC+TGG | - | chr7_4:50370903-50370922 | Msa1160460:intron | 35.0% |
| ! | GTGATGATGATAATACTCAC+AGG | - | chr7_4:50370925-50370944 | Msa1160460:intron | 35.0% |
| ! | ATGAGAGTGATGATGATACA+TGG | + | chr7_4:50370967-50370986 | None:intergenic | 35.0% |
| ATGTATCATCATCACTCTCA+TGG | - | chr7_4:50370966-50370985 | Msa1160460:intron | 35.0% | |
| GTAACTACTCTTACATGCAA+AGG | + | chr7_4:50371013-50371032 | None:intergenic | 35.0% | |
| ! | CCTCGTTAAATTTTCCATCA+TGG | + | chr7_4:50371121-50371140 | None:intergenic | 35.0% |
| ! | CCATGATGGAAAATTTAACG+AGG | - | chr7_4:50371118-50371137 | Msa1160460:CDS | 35.0% |
| !!! | TTTTGGAATGAAAGGATGCA+TGG | - | chr7_4:50371435-50371454 | Msa1160460:exon | 35.0% |
| !! | TGTCTTGATGATGATGATGG+TGG | + | chr7_4:50368007-50368026 | None:intergenic | 40.0% |
| GATTGAAAGAGAGAGAGGTT+TGG | + | chr7_4:50368088-50368107 | None:intergenic | 40.0% | |
| GAGATCTTAGTGAGTCTTCA+AGG | + | chr7_4:50368142-50368161 | None:intergenic | 40.0% | |
| TCGTAACCAACTGAGTTAAC+TGG | + | chr7_4:50368380-50368399 | None:intergenic | 40.0% | |
| AGTTAACTCAGTTGGTTACG+AGG | - | chr7_4:50368379-50368398 | Msa1160460:intron | 40.0% | |
| ATGCTTCAGTTTCTGTACAG+TGG | - | chr7_4:50368413-50368432 | Msa1160460:intron | 40.0% | |
| AATGTGTATGCCAACAACCA+CGG | + | chr7_4:50368490-50368509 | None:intergenic | 40.0% | |
| ! | TTCAACTCCGAAGTATCTAG+CGG | + | chr7_4:50368552-50368571 | None:intergenic | 40.0% |
| !!! | GTGACCAGTCGTATGTTTTT+TGG | - | chr7_4:50368727-50368746 | Msa1160460:CDS | 40.0% |
| AGACCCAAAAAACATACGAC+TGG | + | chr7_4:50368734-50368753 | None:intergenic | 40.0% | |
| !!! | GTCGTATGTTTTTTGGGTCT+TGG | - | chr7_4:50368734-50368753 | Msa1160460:CDS | 40.0% |
| TTGGGAATTTCCACAGTTAC+TGG | - | chr7_4:50368753-50368772 | Msa1160460:CDS | 40.0% | |
| TTCCCAAAAACCAGTAACTG+TGG | + | chr7_4:50368766-50368785 | None:intergenic | 40.0% | |
| !!! | AGTTACTGGTTTTTGGGAAC+TGG | - | chr7_4:50368767-50368786 | Msa1160460:CDS | 40.0% |
| !!! | GTTACTGGTTTTTGGGAACT+GGG | - | chr7_4:50368768-50368787 | Msa1160460:CDS | 40.0% |
| TCAAGCAACAAACTGTGAAG+AGG | + | chr7_4:50369168-50369187 | None:intergenic | 40.0% | |
| AGCAAAGAGAAGAAAGTGAG+TGG | + | chr7_4:50369559-50369578 | None:intergenic | 40.0% | |
| ! | AGGGAAAAGAGTTTGGGATT+TGG | + | chr7_4:50369614-50369633 | None:intergenic | 40.0% |
| CATGCAAGGGAAAAGAGTTT+GGG | + | chr7_4:50369620-50369639 | None:intergenic | 40.0% | |
| TCATGCAAGGGAAAAGAGTT+TGG | + | chr7_4:50369621-50369640 | None:intergenic | 40.0% | |
| AACAAGACATGCACCAACTA+TGG | - | chr7_4:50370082-50370101 | Msa1160460:intron | 40.0% | |
| ! | ACCTGATTTTGCTACAAGGT+GGG | + | chr7_4:50370118-50370137 | None:intergenic | 40.0% |
| ! | GAAGACCTGATTTTGCTACA+AGG | + | chr7_4:50370122-50370141 | None:intergenic | 40.0% |
| ! | TGTTTTGCAAGTACTTCTGG+GGG | + | chr7_4:50370144-50370163 | None:intergenic | 40.0% |
| !! | GATTTTCTGGTCTTCAAGGT+CGG | + | chr7_4:50370286-50370305 | None:intergenic | 40.0% |
| TTGAAGACCAGAAAATCCGT+CGG | - | chr7_4:50370289-50370308 | Msa1160460:intron | 40.0% | |
| GCTAGTGAAACTCATGGTAA+TGG | - | chr7_4:50370344-50370363 | Msa1160460:intron | 40.0% | |
| !! | AAACTCATGGTAATGGGAGA+AGG | - | chr7_4:50370351-50370370 | Msa1160460:intron | 40.0% |
| ! | AGAAGTTGTGAAAGCCTTGT+TGG | - | chr7_4:50370428-50370447 | Msa1160460:intron | 40.0% |
| CATCAACTGTTCTCACATTC+GGG | + | chr7_4:50370572-50370591 | None:intergenic | 40.0% | |
| CCATCAACTGTTCTCACATT+CGG | + | chr7_4:50370573-50370592 | None:intergenic | 40.0% | |
| AGGGTTCTTAGAATGTCCAA+GGG | + | chr7_4:50370603-50370622 | None:intergenic | 40.0% | |
| TAGGGTTCTTAGAATGTCCA+AGG | + | chr7_4:50370604-50370623 | None:intergenic | 40.0% | |
| GGTTCAATGTGAGTTAATCC+AGG | + | chr7_4:50370657-50370676 | None:intergenic | 40.0% | |
| ! | TGCAGCTCTTGTTATGTCAA+GGG | - | chr7_4:50370713-50370732 | Msa1160460:intron | 40.0% |
| ! | CTTGTTATGTCAAGGGAAGA+AGG | - | chr7_4:50370720-50370739 | Msa1160460:intron | 40.0% |
| ! | TATTGTTGTTGTGGCTATGG+TGG | + | chr7_4:50370833-50370852 | None:intergenic | 40.0% |
| !! | AGGTTGGTGTATCTTAACCT+TGG | - | chr7_4:50370864-50370883 | Msa1160460:intron | 40.0% |
| TGGAAAATTTAACGAGGGGA+AGG | - | chr7_4:50371124-50371143 | Msa1160460:CDS | 40.0% | |
| ! | TTGGCTCTCTGATGTTTAGT+TGG | - | chr7_4:50371276-50371295 | Msa1160460:CDS | 40.0% |
| TGGCTCTCTGATGTTTAGTT+GGG | - | chr7_4:50371277-50371296 | Msa1160460:CDS | 40.0% | |
| ! | ACTAGTCACCATTTGAAGTG+CGG | - | chr7_4:50371348-50371367 | Msa1160460:CDS | 40.0% |
| CTGATGTGAAGCTAATACCA+CGG | - | chr7_4:50371528-50371547 | Msa1160460:five_prime_UTR | 40.0% | |
| ! | TATGGAGGGGTATACCTGTT+GGG | + | chr7_4:50367921-50367940 | None:intergenic | 45.0% |
| ! | ATATGGAGGGGTATACCTGT+TGG | + | chr7_4:50367922-50367941 | None:intergenic | 45.0% |
| AGAAGAGACTTCTTGCTGCT+AGG | + | chr7_4:50368262-50368281 | None:intergenic | 45.0% | |
| ATGGGTCTAATCCAGAAGGT+GGG | + | chr7_4:50368310-50368329 | None:intergenic | 45.0% | |
| TTCCTCAGAAACATGAGCCT+AGG | - | chr7_4:50368450-50368469 | Msa1160460:intron | 45.0% | |
| !! | TGGTTTTTGGGAACTGGGAA+GGG | - | chr7_4:50368773-50368792 | Msa1160460:CDS | 45.0% |
| ACAGAAACAACTAGCGAGCA+TGG | - | chr7_4:50370008-50370027 | Msa1160460:intron | 45.0% | |
| TCCCACCTTGTAGCAAAATC+AGG | - | chr7_4:50370114-50370133 | Msa1160460:intron | 45.0% | |
| ! | GACCTGATTTTGCTACAAGG+TGG | + | chr7_4:50370119-50370138 | None:intergenic | 45.0% |
| ! | GATGCGAAGCTCTTCGATTT+TGG | + | chr7_4:50370187-50370206 | None:intergenic | 45.0% |
| !! | ATGATGGTGGTGAGGCATTA+AGG | + | chr7_4:50370232-50370251 | None:intergenic | 45.0% |
| !! | GACGGATTTTCTGGTCTTCA+AGG | + | chr7_4:50370290-50370309 | None:intergenic | 45.0% |
| CTGCAATTCTCAACGGCATA+AGG | + | chr7_4:50370405-50370424 | None:intergenic | 45.0% | |
| !! | GTGAAAGCCTTGTTGGAACT+CGG | - | chr7_4:50370435-50370454 | Msa1160460:intron | 45.0% |
| !! | TGTAGCGGAGTTTTACCAGT+TGG | + | chr7_4:50370489-50370508 | None:intergenic | 45.0% |
| AACTCCGCTACATATTGCAG+CGG | - | chr7_4:50370497-50370516 | Msa1160460:intron | 45.0% | |
| ATCTCCGCTGCAATATGTAG+CGG | + | chr7_4:50370504-50370523 | None:intergenic | 45.0% | |
| AGCAATACAGCCACCATATC+CGG | + | chr7_4:50370534-50370553 | None:intergenic | 45.0% | |
| CCGAATGTGAGAACAGTTGA+TGG | - | chr7_4:50370570-50370589 | Msa1160460:intron | 45.0% | |
| !! | AGTTGATGGTGTTACACCCT+TGG | - | chr7_4:50370584-50370603 | Msa1160460:intron | 45.0% |
| ! | CTGCAGCTCTTGTTATGTCA+AGG | - | chr7_4:50370712-50370731 | Msa1160460:intron | 45.0% |
| !! | GGGAAGGTTTTGTCCATGAA+AGG | - | chr7_4:50371140-50371159 | Msa1160460:CDS | 45.0% |
| ! | CCATGATGAAGCACCTTTCA+TGG | + | chr7_4:50371156-50371175 | None:intergenic | 45.0% |
| !! | CCATGAAAGGTGCTTCATCA+TGG | - | chr7_4:50371153-50371172 | Msa1160460:CDS | 45.0% |
| !! | TGAAAGGTGCTTCATCATGG+TGG | - | chr7_4:50371156-50371175 | Msa1160460:CDS | 45.0% |
| CTATGAGACCGCACTTCAAA+TGG | + | chr7_4:50371359-50371378 | None:intergenic | 45.0% | |
| ! | CATTTGAAGTGCGGTCTCAT+AGG | - | chr7_4:50371357-50371376 | Msa1160460:CDS | 45.0% |
| GGAGAATGGGATAAGAGACA+AGG | - | chr7_4:50371378-50371397 | Msa1160460:CDS | 45.0% | |
| TGGAATGAAAGGATGCATGG+AGG | - | chr7_4:50371438-50371457 | Msa1160460:exon | 45.0% | |
| GGAAGACAATAAATAGGCCG+TGG | + | chr7_4:50371548-50371567 | None:intergenic | 45.0% | |
| TAATTGAGAAAGTGGGGGGT+GGG | + | chr7_4:50371595-50371614 | None:intergenic | 45.0% | |
| ATAATTGAGAAAGTGGGGGG+TGG | + | chr7_4:50371596-50371615 | None:intergenic | 45.0% | |
| !!! | TCAATTTTATTTTTATTTTT+TGG | - | chr7_4:50371418-50371437 | Msa1160460:CDS | 5.0% |
| ! | AGGGGTATACCTGTTGGGAT+GGG | + | chr7_4:50367916-50367935 | None:intergenic | 50.0% |
| ! | ACGCTTGTCCGTTGATGAGA+AGG | + | chr7_4:50368184-50368203 | None:intergenic | 50.0% |
| !! | GACGTTGTTTTCAGCGTCGA+AGG | - | chr7_4:50368209-50368228 | Msa1160460:three_prime_UTR | 50.0% |
| TCTAATCCAGAAGGTGGGTC+TGG | + | chr7_4:50368305-50368324 | None:intergenic | 50.0% | |
| GATGGGTCTAATCCAGAAGG+TGG | + | chr7_4:50368311-50368330 | None:intergenic | 50.0% | |
| ! | CCTGATGGGTCTAATCCAGA+AGG | + | chr7_4:50368314-50368333 | None:intergenic | 50.0% |
| ! | CCTTCTGGATTAGACCCATC+AGG | - | chr7_4:50368311-50368330 | Msa1160460:intron | 50.0% |
| !! | GGTTGACTCGGTTTCCTGAT+GGG | + | chr7_4:50368328-50368347 | None:intergenic | 50.0% |
| AACACCAGACCTAGCTGAAC+CGG | + | chr7_4:50368354-50368373 | None:intergenic | 50.0% | |
| CATGAGCCTAGGCCTAATTG+TGG | - | chr7_4:50368461-50368480 | Msa1160460:intron | 50.0% | |
| CAACCACGGTCACCACAATT+AGG | + | chr7_4:50368476-50368495 | None:intergenic | 50.0% | |
| ATTGTGGTGACCGTGGTTGT+TGG | - | chr7_4:50368477-50368496 | Msa1160460:intron | 50.0% | |
| AAGAGCAAGATCAACGGCTG+AGG | + | chr7_4:50368516-50368535 | None:intergenic | 50.0% | |
| CTTGCAGCCGCTAGATACTT+CGG | - | chr7_4:50368542-50368561 | Msa1160460:intron | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | - | chr7_4:50368571-50368590 | Msa1160460:exon | 50.0% | |
| !! | CTGGTTTTTGGGAACTGGGA+AGG | - | chr7_4:50368772-50368791 | Msa1160460:CDS | 50.0% |
| GAAACAACTAGCGAGCATGG+TGG | - | chr7_4:50370011-50370030 | Msa1160460:intron | 50.0% | |
| GGGAACATGTGGTCCATAGT+TGG | + | chr7_4:50370098-50370117 | None:intergenic | 50.0% | |
| TGCTACAAGGTGGGAACATG+TGG | + | chr7_4:50370109-50370128 | None:intergenic | 50.0% | |
| CATTAAGGAGCGGCGTGATA+TGG | + | chr7_4:50370217-50370236 | None:intergenic | 50.0% | |
| !! | GTCTCATCCGACGGATTTTC+TGG | + | chr7_4:50370299-50370318 | None:intergenic | 50.0% |
| TTTCACTAGCTCGACGTCTG+AGG | + | chr7_4:50370334-50370353 | None:intergenic | 50.0% | |
| CGTCGAGCTAGTGAAACTCA+TGG | - | chr7_4:50370338-50370357 | Msa1160460:intron | 50.0% | |
| TGCAGCCGATGTTAACTTCC+CGG | - | chr7_4:50370458-50370477 | Msa1160460:intron | 50.0% | |
| ACCAGCCGGGAAGTTAACAT+CGG | + | chr7_4:50370466-50370485 | None:intergenic | 50.0% | |
| ! | TTTTACCAGTTGGACCAGCC+GGG | + | chr7_4:50370479-50370498 | None:intergenic | 50.0% |
| ! | GTTTTACCAGTTGGACCAGC+CGG | + | chr7_4:50370480-50370499 | None:intergenic | 50.0% |
| GCTACATATTGCAGCGGAGA+TGG | - | chr7_4:50370503-50370522 | Msa1160460:intron | 50.0% | |
| !! | CTATTCAAAGGTGCTGTCCC+TGG | - | chr7_4:50370636-50370655 | Msa1160460:intron | 50.0% |
| AGTGCGGTCTCATAGGAGAA+TGG | - | chr7_4:50371364-50371383 | Msa1160460:CDS | 50.0% | |
| GTGCGGTCTCATAGGAGAAT+GGG | - | chr7_4:50371365-50371384 | Msa1160460:CDS | 50.0% | |
| GGATGCATGGAGGAGACTTT+AGG | - | chr7_4:50371448-50371467 | Msa1160460:exon | 50.0% | |
| ! | GAGGGGTATACCTGTTGGGA+TGG | + | chr7_4:50367917-50367936 | None:intergenic | 55.0% |
| CTAGGATGCATCTGTGTGCG+TGG | + | chr7_4:50368244-50368263 | None:intergenic | 55.0% | |
| !! | GGGTTGACTCGGTTTCCTGA+TGG | + | chr7_4:50368329-50368348 | None:intergenic | 55.0% |
| GGAAACCGAGTCAACCCATC+CGG | - | chr7_4:50368332-50368351 | Msa1160460:intron | 55.0% | |
| !! | CTGAACCGGATGGGTTGACT+CGG | + | chr7_4:50368340-50368359 | None:intergenic | 55.0% |
| TCAACCCATCCGGTTCAGCT+AGG | - | chr7_4:50368342-50368361 | Msa1160460:intron | 55.0% | |
| CAGACCTAGCTGAACCGGAT+GGG | + | chr7_4:50368349-50368368 | None:intergenic | 55.0% | |
| ! | GGCCTAGGCTCATGTTTCTG+AGG | + | chr7_4:50368455-50368474 | None:intergenic | 55.0% |
| CGGTCACCACAATTAGGCCT+AGG | + | chr7_4:50368470-50368489 | None:intergenic | 55.0% | |
| AGGCCTAATTGTGGTGACCG+TGG | - | chr7_4:50368470-50368489 | Msa1160460:intron | 55.0% | |
| CGTGCACTAGCTGACTGTGT+TGG | + | chr7_4:50369430-50369449 | None:intergenic | 55.0% | |
| TAAGGAGCGGCGTGATATGG+AGG | + | chr7_4:50370214-50370233 | None:intergenic | 55.0% | |
| ! | GGTGGTGAGGCATTAAGGAG+CGG | + | chr7_4:50370227-50370246 | None:intergenic | 55.0% |
| !! | TGGTGAGGATGATGGTGGTG+AGG | + | chr7_4:50370240-50370259 | None:intergenic | 55.0% |
| ! | CGTGATGGTGAGGATGATGG+TGG | + | chr7_4:50370245-50370264 | None:intergenic | 55.0% |
| ! | GGTCGTGATGGTGAGGATGA+TGG | + | chr7_4:50370248-50370267 | None:intergenic | 55.0% |
| ! | GTGAGATGGTCGTGATGGTG+AGG | + | chr7_4:50370255-50370274 | None:intergenic | 55.0% |
| GGAGATGGTCTCACCGGATA+TGG | - | chr7_4:50370518-50370537 | Msa1160460:intron | 55.0% | |
| GATGGTCTCACCGGATATGG+TGG | - | chr7_4:50370521-50370540 | Msa1160460:intron | 55.0% | |
| TCACATTCGGGTCAGCGTGA+TGG | + | chr7_4:50370560-50370579 | None:intergenic | 55.0% | |
| CCAGACCTAGCTGAACCGGA+TGG | + | chr7_4:50368350-50368369 | None:intergenic | 60.0% | |
| CCATCCGGTTCAGCTAGGTC+TGG | - | chr7_4:50368347-50368366 | Msa1160460:intron | 60.0% | |
| CAGCGGTGAGATGGTCGTGA+TGG | + | chr7_4:50370260-50370279 | None:intergenic | 60.0% | |
| GTCTTCAAGGTCGGCTGCAG+CGG | + | chr7_4:50370277-50370296 | None:intergenic | 60.0% | |
| CTCGACGTCTGAGGAGTCGA+GGG | + | chr7_4:50370325-50370344 | None:intergenic | 60.0% | |
| GGCTGCACCGAGTTCCAACA+AGG | + | chr7_4:50370445-50370464 | None:intergenic | 60.0% | |
| GCCGATGTTAACTTCCCGGC+TGG | - | chr7_4:50370462-50370481 | Msa1160460:intron | 60.0% | |
| ! | AACTTCCCGGCTGGTCCAAC+TGG | - | chr7_4:50370471-50370490 | Msa1160460:intron | 60.0% |
| TGCAGCGGAGATGGTCTCAC+CGG | - | chr7_4:50370512-50370531 | Msa1160460:intron | 60.0% | |
| TGTGGGCCAGACCCACCTTC+TGG | - | chr7_4:50368296-50368315 | Msa1160460:intron | 65.0% | |
| CGAGGGCTCGTCTCATCCGA+CGG | + | chr7_4:50370308-50370327 | None:intergenic | 65.0% | |
| GCTCGACGTCTGAGGAGTCG+AGG | + | chr7_4:50370326-50370345 | None:intergenic | 65.0% | |
| GGTCGGCTGCAGCGGTGAGA+TGG | + | chr7_4:50370269-50370288 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 50367912 | 50371672 | 50367912 | ID=Msa1160460;Name=Msa1160460 |
| chr7_4 | mRNA | 50367912 | 50371672 | 50367912 | ID=Msa1160460-mRNA-1;Parent=Msa1160460;Name=Msa1160460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=222|1|1|1|0.5|0.66|3|353|482 |
| chr7_4 | exon | 50367912 | 50368247 | 50367912 | ID=Msa1160460-mRNA-1:exon:13975;Parent=Msa1160460-mRNA-1 |
| chr7_4 | exon | 50368566 | 50369572 | 50368566 | ID=Msa1160460-mRNA-1:exon:13974;Parent=Msa1160460-mRNA-1 |
| chr7_4 | exon | 50370992 | 50371672 | 50370992 | ID=Msa1160460-mRNA-1:exon:13973;Parent=Msa1160460-mRNA-1 |
| chr7_4 | five_prime_UTR | 50371451 | 50371672 | 50371451 | ID=Msa1160460-mRNA-1:five_prime_utr;Parent=Msa1160460-mRNA-1 |
| chr7_4 | CDS | 50370992 | 50371450 | 50370992 | ID=Msa1160460-mRNA-1:cds;Parent=Msa1160460-mRNA-1 |
| chr7_4 | CDS | 50368583 | 50369572 | 50368583 | ID=Msa1160460-mRNA-1:cds;Parent=Msa1160460-mRNA-1 |
| chr7_4 | three_prime_UTR | 50368566 | 50368582 | 50368566 | ID=Msa1160460-mRNA-1:three_prime_utr;Parent=Msa1160460-mRNA-1 |
| chr7_4 | three_prime_UTR | 50367912 | 50368247 | 50367912 | ID=Msa1160460-mRNA-1:three_prime_utr;Parent=Msa1160460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
