Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161240 | XP_003624883.1 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.48e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161240 | sp|Q9M612|NACA_PINTA | 74.359 | 195 | 43 | 4 | 11 | 203 | 16 | 205 | 1.40e-83 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161240 | G7L4T7 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 7.07e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1117560 | Msa1161240 | 0.916560 | 1.537084e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161240 | MtrunA17_Chr7g0255421 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.36e-146 | 405 |
| Msa1161240 | MtrunA17_Chr3g0128041 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.21e-67 | 206 |
| Msa1161240 | MtrunA17_Chr3g0128051 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 6.82e-59 | 184 |
| Msa1161240 | MtrunA17_Chr3g0128591 | 56.303 | 119 | 41 | 3 | 87 | 203 | 390 | 499 | 5.19e-30 | 115 |
| Msa1161240 | MtrunA17_Chr3g0128571 | 78.571 | 42 | 9 | 0 | 161 | 202 | 21 | 62 | 2.42e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161240 | AT3G12390.1 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 2.06e-77 | 231 |
| Msa1161240 | AT5G13850.1 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 1.11e-75 | 226 |
| Msa1161240 | AT3G49470.1 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.53e-67 | 206 |
| Msa1161240 | AT3G49470.2 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.36e-61 | 192 |
| Msa1161240 | AT4G10480.2 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 3.81e-61 | 190 |
| Msa1161240 | AT4G10480.1 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 7.24e-61 | 189 |
| Msa1161240 | AT1G33040.1 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 6.61e-59 | 184 |
Find 62 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTAGTACTTTAGATTT+TGG | 0.129061 | 7_4:+51499151 | Msa1161240:three_prime_UTR |
| TCTGACACCTACATCATATT+TGG | 0.140657 | 7_4:+51498855 | Msa1161240:CDS |
| CAAGAAGCTCTTCTTGGGTT+TGG | 0.250426 | 7_4:-51497051 | None:intergenic |
| CTGACACCTACATCATATTT+GGG | 0.293613 | 7_4:+51498856 | Msa1161240:CDS |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 7_4:-51498990 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | 7_4:-51497057 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTT+GGG | 0.331123 | 7_4:-51497050 | None:intergenic |
| CTTGTTTCGGTTTGAAATAG+TGG | 0.344036 | 7_4:+51499214 | Msa1161240:three_prime_UTR |
| GCACCCGCATTGGTCAAATT+AGG | 0.353452 | 7_4:-51498942 | None:intergenic |
| TGGCCAAAGGATTTGAAAAC+AGG | 0.355884 | 7_4:-51499496 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 7_4:+51499106 | Msa1161240:CDS |
| CTCGGAATGAAAGCTGTTAC+TGG | 0.360803 | 7_4:+51498655 | Msa1161240:CDS |
| GCTTTAACAGCTCTTGATCT+TGG | 0.362012 | 7_4:-51499065 | None:intergenic |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 7_4:-51498831 | None:intergenic |
| TTTCGTTTGTGTGTTGTGTT+TGG | 0.375646 | 7_4:+51496973 | None:intergenic |
| TTCTTGGGTTTGGGCAGTCA+TGG | 0.386669 | 7_4:-51497041 | None:intergenic |
| AACAAATTAATGCTCAGAAT+TGG | 0.398318 | 7_4:+51499133 | Msa1161240:exon |
| GGAGCAATACCAGAGGATTC+CGG | 0.409321 | 7_4:-51498969 | None:intergenic |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 7_4:-51499120 | None:intergenic |
| CTACGACCAGCTGTCATTCT+CGG | 0.428915 | 7_4:-51499346 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 7_4:-51499027 | None:intergenic |
| TATAGAACACAGCAAAGGTT+TGG | 0.446403 | 7_4:-51499380 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.446621 | 7_4:-51497056 | None:intergenic |
| GACCAATGCGGGTGCGAAGC+CGG | 0.455574 | 7_4:+51498950 | Msa1161240:CDS |
| AAATTGTTCTTTAGCACTCT+AGG | 0.468977 | 7_4:+51499441 | Msa1161240:three_prime_UTR |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | 7_4:+51498917 | Msa1161240:CDS |
| GGTGCGAAGCCGGAATCCTC+TGG | 0.477701 | 7_4:+51498960 | Msa1161240:CDS |
| TCATCGTCATCCTCGACTAC+AGG | 0.490581 | 7_4:-51497683 | None:intergenic |
| TTCCGGCTTCGCACCCGCAT+TGG | 0.502604 | 7_4:-51498952 | None:intergenic |
| ATGATGTAGGTGTCAGAAGT+TGG | 0.509913 | 7_4:-51498849 | None:intergenic |
| AATACATAGCCACGCAATGA+AGG | 0.511286 | 7_4:-51499406 | None:intergenic |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 7_4:+51499025 | Msa1161240:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | 7_4:+51498939 | Msa1161240:CDS |
| CGCAAGGCAATGCTTAAACT+CGG | 0.521577 | 7_4:+51498637 | Msa1161240:CDS |
| AACAAAGCAAAGGTAAAGGT+TGG | 0.531441 | 7_4:-51499241 | None:intergenic |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 7_4:-51499026 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 7_4:+51498996 | Msa1161240:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | 7_4:+51498580 | Msa1161240:intron |
| ATAGAACAAAGCAAAGGTAA+AGG | 0.545733 | 7_4:-51499245 | None:intergenic |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | 7_4:-51499099 | None:intergenic |
| TGTTCTTTAGCACTCTAGGT+TGG | 0.555273 | 7_4:+51499445 | Msa1161240:three_prime_UTR |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 7_4:+51499038 | Msa1161240:CDS |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | 7_4:+51499083 | Msa1161240:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 7_4:+51498899 | Msa1161240:CDS |
| AGCTTCCCCAAATATGATGT+AGG | 0.598188 | 7_4:-51498862 | None:intergenic |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 7_4:+51499010 | Msa1161240:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 7_4:+51498980 | Msa1161240:CDS |
| CGAATGCCGAGAATGACAGC+TGG | 0.613710 | 7_4:+51499340 | Msa1161240:three_prime_UTR |
| TCTATATTACCTTCATTGCG+TGG | 0.615723 | 7_4:+51499397 | Msa1161240:three_prime_UTR |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 7_4:+51499022 | Msa1161240:CDS |
| GCATGATGAGCCTGTAGTCG+AGG | 0.640360 | 7_4:+51497673 | Msa1161240:intron |
| TGACGAAGATGACGATGATG+AGG | 0.642696 | 7_4:+51497721 | Msa1161240:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | 7_4:+51498584 | Msa1161240:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | 7_4:+51498938 | Msa1161240:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | 7_4:+51498621 | Msa1161240:CDS |
| GGTAATATAGAACACAGCAA+AGG | 0.652612 | 7_4:-51499385 | None:intergenic |
| TGACACCTACATCATATTTG+GGG | 0.656598 | 7_4:+51498857 | Msa1161240:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 7_4:-51498976 | None:intergenic |
| CATAAAATAGAACAAAGCAA+AGG | 0.674768 | 7_4:-51499251 | None:intergenic |
| AGTCGAGGATGACGATGATG+AGG | 0.675870 | 7_4:+51497688 | Msa1161240:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | 7_4:+51497697 | Msa1161240:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | 7_4:+51497740 | Msa1161240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAATAAATAAAT+TGG | - | chr7_4:51497132-51497151 | None:intergenic | 0.0% |
| !! | AAAATAAATAAATAAATTGG+AGG | - | chr7_4:51497129-51497148 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAGTTCAGTTTT+TGG | + | chr7_4:51497145-51497164 | Msa1161240:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | chr7_4:51497227-51497246 | Msa1161240:intron | 15.0% |
| !!! | GATTTTATGAATAAATTGAA+AGG | + | chr7_4:51497370-51497389 | Msa1161240:intron | 15.0% |
| !! | ATGTTACAATGAAAAAAAAA+TGG | + | chr7_4:51497408-51497427 | Msa1161240:intron | 15.0% |
| !! | TAAACAATAAAAAAGAATAC+CGG | - | chr7_4:51498055-51498074 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTTTCTATTGC+AGG | + | chr7_4:51498559-51498578 | Msa1161240:intron | 15.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | chr7_4:51497226-51497245 | Msa1161240:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+AGG | + | chr7_4:51497320-51497339 | Msa1161240:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCA+GGG | + | chr7_4:51497321-51497340 | Msa1161240:intron | 20.0% |
| !! | TTATTCATAAAATCATGACA+TGG | - | chr7_4:51497364-51497383 | None:intergenic | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | chr7_4:51497498-51497517 | Msa1161240:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | chr7_4:51497918-51497937 | Msa1161240:intron | 20.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | chr7_4:51497919-51497938 | Msa1161240:intron | 20.0% |
| !!! | TTATTCCTTTATTTCATTTG+AGG | + | chr7_4:51497968-51497987 | Msa1161240:intron | 20.0% |
| !!! | TCTGAAAGAAGTTGATTTTT+GGG | - | chr7_4:51497012-51497031 | None:intergenic | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | chr7_4:51497175-51497194 | Msa1161240:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | chr7_4:51497189-51497208 | None:intergenic | 25.0% |
| !!! | GGTTTAGTTTTTGATGTTTT+TGG | + | chr7_4:51497196-51497215 | Msa1161240:intron | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | chr7_4:51497259-51497278 | Msa1161240:intron | 25.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | chr7_4:51497260-51497279 | Msa1161240:intron | 25.0% |
| ! | ATGTATTTGTGTATCTATAG+CGG | + | chr7_4:51497462-51497481 | Msa1161240:intron | 25.0% |
| ! | TCGTAAACTTATAAGTATAG+TGG | + | chr7_4:51497589-51497608 | Msa1161240:intron | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | chr7_4:51497871-51497890 | Msa1161240:intron | 25.0% |
| ! | TTCATTTAAAAGTTCAACAC+CGG | + | chr7_4:51498033-51498052 | Msa1161240:intron | 25.0% |
| ! | TAAATAAAGAACAACTGAGA+AGG | - | chr7_4:51498162-51498181 | None:intergenic | 25.0% |
| !! | TCTTTATTTAGTGTATGTTG+TGG | + | chr7_4:51498172-51498191 | Msa1161240:intron | 25.0% |
| !! | CTTTATTTAGTGTATGTTGT+GGG | + | chr7_4:51498173-51498192 | Msa1161240:intron | 25.0% |
| ! | TTCAGTGTAATTACAAAAGT+CGG | - | chr7_4:51498339-51498358 | None:intergenic | 25.0% |
| !! | TTTTTCCGTTCTATCAATAT+TGG | + | chr7_4:51498745-51498764 | Msa1161240:intron | 25.0% |
| ! | ACATTCCAATATTGATAGAA+CGG | - | chr7_4:51498753-51498772 | None:intergenic | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | chr7_4:51499123-51499142 | None:intergenic | 25.0% |
| ! | AACAAATTAATGCTCAGAAT+TGG | + | chr7_4:51499133-51499152 | Msa1161240:exon | 25.0% |
| !!! | ATTGGTAGTACTTTAGATTT+TGG | + | chr7_4:51499151-51499170 | Msa1161240:three_prime_UTR | 25.0% |
| !!! | CATTTTTTTTGCTCTTGTTT+CGG | + | chr7_4:51499201-51499220 | Msa1161240:three_prime_UTR | 25.0% |
| ! | CATAAAATAGAACAAAGCAA+AGG | - | chr7_4:51499254-51499273 | None:intergenic | 25.0% |
| !! | CTCTGAAAGAAGTTGATTTT+TGG | - | chr7_4:51497013-51497032 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAATCAGGGTTTT+TGG | + | chr7_4:51497328-51497347 | Msa1161240:intron | 30.0% |
| ATAGCATTCCTTGAGTAATT+TGG | + | chr7_4:51497836-51497855 | Msa1161240:intron | 30.0% | |
| AATTCCTACCAAATTACTCA+AGG | - | chr7_4:51497847-51497866 | None:intergenic | 30.0% | |
| GAAGACCTCAAATGAAATAA+AGG | - | chr7_4:51497976-51497995 | None:intergenic | 30.0% | |
| TATTCTGGTACAGACTAATT+TGG | - | chr7_4:51498459-51498478 | None:intergenic | 30.0% | |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | chr7_4:51498474-51498493 | None:intergenic | 30.0% |
| CAAAAAAACAACAGCAAAAG+TGG | - | chr7_4:51498511-51498530 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTGCATGAACTG+AGG | + | chr7_4:51498520-51498539 | Msa1161240:intron | 30.0% |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | chr7_4:51498568-51498587 | Msa1161240:intron | 30.0% |
| ! | GTACTTTAGATTTTGGATTG+TGG | + | chr7_4:51499158-51499177 | Msa1161240:three_prime_UTR | 30.0% |
| ATAGAACAAAGCAAAGGTAA+AGG | - | chr7_4:51499248-51499267 | None:intergenic | 30.0% | |
| AAATTGTTCTTTAGCACTCT+AGG | + | chr7_4:51499441-51499460 | Msa1161240:three_prime_UTR | 30.0% | |
| ! | AAACCTGTTTTCAAATCCTT+TGG | + | chr7_4:51499493-51499512 | Msa1161240:three_prime_UTR | 30.0% |
| !! | AAGAAGTTGATTTTTGGGAG+CGG | - | chr7_4:51497007-51497026 | None:intergenic | 35.0% |
| CATTCCTTGAGTAATTTGGT+AGG | + | chr7_4:51497840-51497859 | Msa1161240:intron | 35.0% | |
| TTGAGGTCTTCATTTAACAC+TGG | + | chr7_4:51497985-51498004 | Msa1161240:intron | 35.0% | |
| ! | TGATGTTTTGCATGGTTTGA+TGG | + | chr7_4:51498109-51498128 | Msa1161240:intron | 35.0% |
| ! | ATGGTTTGATGGTACAAAGT+TGG | + | chr7_4:51498120-51498139 | Msa1161240:intron | 35.0% |
| !! | AATTACAAAAGTCGGTGTTG+TGG | - | chr7_4:51498331-51498350 | None:intergenic | 35.0% |
| ! | CTGACAAGGTACATGTATTT+TGG | - | chr7_4:51498485-51498504 | None:intergenic | 35.0% |
| CAAAATACATGTACCTTGTC+AGG | + | chr7_4:51498483-51498502 | Msa1161240:intron | 35.0% | |
| TCTGACACCTACATCATATT+TGG | + | chr7_4:51498855-51498874 | Msa1161240:CDS | 35.0% | |
| CTGACACCTACATCATATTT+GGG | + | chr7_4:51498856-51498875 | Msa1161240:CDS | 35.0% | |
| TGACACCTACATCATATTTG+GGG | + | chr7_4:51498857-51498876 | Msa1161240:CDS | 35.0% | |
| ! | CTTGTTTCGGTTTGAAATAG+TGG | + | chr7_4:51499214-51499233 | Msa1161240:three_prime_UTR | 35.0% |
| AACAAAGCAAAGGTAAAGGT+TGG | - | chr7_4:51499244-51499263 | None:intergenic | 35.0% | |
| TATAGAACACAGCAAAGGTT+TGG | - | chr7_4:51499383-51499402 | None:intergenic | 35.0% | |
| GGTAATATAGAACACAGCAA+AGG | - | chr7_4:51499388-51499407 | None:intergenic | 35.0% | |
| TCTATATTACCTTCATTGCG+TGG | + | chr7_4:51499397-51499416 | Msa1161240:three_prime_UTR | 35.0% | |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | chr7_4:51497053-51497072 | None:intergenic | 40.0% | |
| CCTTCACGAAATGCAAAATG+AGG | - | chr7_4:51497809-51497828 | None:intergenic | 40.0% | |
| ! | CCTCATTTTGCATTTCGTGA+AGG | + | chr7_4:51497806-51497825 | Msa1161240:intron | 40.0% |
| ! | TACAGCTGTGATGTTTTGCA+TGG | + | chr7_4:51498101-51498120 | Msa1161240:intron | 40.0% |
| GTGCAGGTTAGACAAAATCA+CGG | - | chr7_4:51498212-51498231 | None:intergenic | 40.0% | |
| ! | GACAGTACCATGATTTGTCA+CGG | - | chr7_4:51498238-51498257 | None:intergenic | 40.0% |
| ATGAACTGAGGCTACAATGA+TGG | + | chr7_4:51498532-51498551 | Msa1161240:intron | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | chr7_4:51498611-51498630 | None:intergenic | 40.0% |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | chr7_4:51498621-51498640 | Msa1161240:CDS | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | chr7_4:51498834-51498853 | None:intergenic | 40.0% | |
| ATGATGTAGGTGTCAGAAGT+TGG | - | chr7_4:51498852-51498871 | None:intergenic | 40.0% | |
| AGCTTCCCCAAATATGATGT+AGG | - | chr7_4:51498865-51498884 | None:intergenic | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | chr7_4:51499022-51499041 | Msa1161240:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | chr7_4:51499029-51499048 | None:intergenic | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | chr7_4:51499068-51499087 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | chr7_4:51499106-51499125 | Msa1161240:CDS | 40.0% | |
| !!! | GTGGAGCTATTTTTCTTTGC+TGG | + | chr7_4:51499177-51499196 | Msa1161240:three_prime_UTR | 40.0% |
| AATACATAGCCACGCAATGA+AGG | - | chr7_4:51499409-51499428 | None:intergenic | 40.0% | |
| TGTTCTTTAGCACTCTAGGT+TGG | + | chr7_4:51499445-51499464 | Msa1161240:three_prime_UTR | 40.0% | |
| TGGCCAAAGGATTTGAAAAC+AGG | - | chr7_4:51499499-51499518 | None:intergenic | 40.0% | |
| !!! | AGCTACACATTTTTGGCCAA+AGG | - | chr7_4:51499512-51499531 | None:intergenic | 40.0% |
| ! | GCGACATAGCTACACATTTT+TGG | - | chr7_4:51499519-51499538 | None:intergenic | 40.0% |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | chr7_4:51497054-51497073 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | chr7_4:51497059-51497078 | None:intergenic | 45.0% | |
| TGACGAAGATGACGATGATG+AGG | + | chr7_4:51497721-51497740 | Msa1161240:CDS | 45.0% | |
| ! | GTACCATGATTTGTCACGGT+GGG | - | chr7_4:51498234-51498253 | None:intergenic | 45.0% |
| ! | AGTACCATGATTTGTCACGG+TGG | - | chr7_4:51498235-51498254 | None:intergenic | 45.0% |
| GTACTGTCGTAAACGAAGCA+CGG | + | chr7_4:51498250-51498269 | Msa1161240:intron | 45.0% | |
| !! | TACAAAAGTCGGTGTTGTGG+CGG | - | chr7_4:51498328-51498347 | None:intergenic | 45.0% |
| AGCAAAAGTGGATCCTGACA+AGG | - | chr7_4:51498499-51498518 | None:intergenic | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | chr7_4:51498580-51498599 | Msa1161240:intron | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | chr7_4:51498584-51498603 | Msa1161240:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | chr7_4:51498620-51498639 | None:intergenic | 45.0% |
| CGCAAGGCAATGCTTAAACT+CGG | + | chr7_4:51498637-51498656 | Msa1161240:CDS | 45.0% | |
| CTCGGAATGAAAGCTGTTAC+TGG | + | chr7_4:51498655-51498674 | Msa1161240:CDS | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | chr7_4:51498938-51498957 | Msa1161240:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | chr7_4:51498939-51498958 | Msa1161240:CDS | 45.0% | |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | chr7_4:51498979-51498998 | None:intergenic | 45.0% |
| TGGTATTGCTCCAGAAGATG+AGG | + | chr7_4:51498980-51498999 | Msa1161240:CDS | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | chr7_4:51498993-51499012 | None:intergenic | 45.0% | |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | chr7_4:51499025-51499044 | Msa1161240:CDS | 45.0% |
| CACCACCAACTCAATATCCT+TGG | - | chr7_4:51499030-51499049 | None:intergenic | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | chr7_4:51499083-51499102 | Msa1161240:CDS | 45.0% | |
| !!! | TTTAATTAATAGATTTTTAA+AGG | + | chr7_4:51499468-51499487 | Msa1161240:three_prime_UTR | 5.0% |
| TTCTTGGGTTTGGGCAGTCA+TGG | - | chr7_4:51497044-51497063 | None:intergenic | 50.0% | |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | chr7_4:51497060-51497079 | None:intergenic | 50.0% | |
| TCATCGTCATCCTCGACTAC+AGG | - | chr7_4:51497686-51497705 | None:intergenic | 50.0% | |
| AGTCGAGGATGACGATGATG+AGG | + | chr7_4:51497688-51497707 | Msa1161240:CDS | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | chr7_4:51497697-51497716 | Msa1161240:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | chr7_4:51497740-51497759 | Msa1161240:CDS | 50.0% | |
| AACGAAGCACGGACACTTCT+CGG | + | chr7_4:51498261-51498280 | Msa1161240:intron | 50.0% | |
| GATTAGGCGTGTCCTAGTGT+CGG | + | chr7_4:51498283-51498302 | Msa1161240:intron | 50.0% | |
| CACGACATGTATCCGACACT+AGG | - | chr7_4:51498298-51498317 | None:intergenic | 50.0% | |
| GTCCTATGAAGCACAGACAC+CGG | - | chr7_4:51498407-51498426 | None:intergenic | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | chr7_4:51498899-51498918 | Msa1161240:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | chr7_4:51498945-51498964 | None:intergenic | 50.0% |
| GGAGCAATACCAGAGGATTC+CGG | - | chr7_4:51498972-51498991 | None:intergenic | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | chr7_4:51498996-51499015 | Msa1161240:CDS | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | chr7_4:51499102-51499121 | None:intergenic | 50.0% | |
| CTACGACCAGCTGTCATTCT+CGG | - | chr7_4:51499349-51499368 | None:intergenic | 50.0% | |
| GCATGATGAGCCTGTAGTCG+AGG | + | chr7_4:51497673-51497692 | Msa1161240:intron | 55.0% | |
| ! | TGATTTGTCACGGTGGGTGC+AGG | - | chr7_4:51498228-51498247 | None:intergenic | 55.0% |
| GCACCCACCGTGACAAATCA+TGG | + | chr7_4:51498228-51498247 | Msa1161240:intron | 55.0% | |
| GCACGGACACTTCTCGGATT+AGG | + | chr7_4:51498267-51498286 | Msa1161240:intron | 55.0% | |
| TGTGTCAGCGTGTCAGTGTC+CGG | + | chr7_4:51498385-51498404 | Msa1161240:intron | 55.0% | |
| GTCCGGTGTCTGTGCTTCAT+AGG | + | chr7_4:51498402-51498421 | Msa1161240:intron | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | chr7_4:51498917-51498936 | Msa1161240:CDS | 55.0% | |
| CGAGACTGGTGTAGATCCCA+AGG | + | chr7_4:51499010-51499029 | Msa1161240:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | chr7_4:51499038-51499057 | Msa1161240:CDS | 55.0% |
| CGAATGCCGAGAATGACAGC+TGG | + | chr7_4:51499340-51499359 | Msa1161240:three_prime_UTR | 55.0% | |
| !! | AGTCGGTGTTGTGGCGGTGT+CGG | - | chr7_4:51498322-51498341 | None:intergenic | 60.0% |
| GACCAATGCGGGTGCGAAGC+CGG | + | chr7_4:51498950-51498969 | Msa1161240:CDS | 65.0% | |
| TTCCGGCTTCGCACCCGCAT+TGG | - | chr7_4:51498955-51498974 | None:intergenic | 65.0% | |
| GGTGCGAAGCCGGAATCCTC+TGG | + | chr7_4:51498960-51498979 | Msa1161240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 51496975 | 51499555 | 51496975 | ID=Msa1161240;Name=Msa1161240 |
| chr7_4 | mRNA | 51496975 | 51499555 | 51496975 | ID=Msa1161240-mRNA-1;Parent=Msa1161240;Name=Msa1161240-mRNA-1;_AED=0.43;_eAED=0.43;_QI=68|1|1|1|1|1|4|413|203 |
| chr7_4 | exon | 51496975 | 51497102 | 51496975 | ID=Msa1161240-mRNA-1:exon:14564;Parent=Msa1161240-mRNA-1 |
| chr7_4 | exon | 51497674 | 51497761 | 51497674 | ID=Msa1161240-mRNA-1:exon:14565;Parent=Msa1161240-mRNA-1 |
| chr7_4 | exon | 51498581 | 51498711 | 51498581 | ID=Msa1161240-mRNA-1:exon:14566;Parent=Msa1161240-mRNA-1 |
| chr7_4 | exon | 51498810 | 51499555 | 51498810 | ID=Msa1161240-mRNA-1:exon:14567;Parent=Msa1161240-mRNA-1 |
| chr7_4 | five_prime_UTR | 51496975 | 51497042 | 51496975 | ID=Msa1161240-mRNA-1:five_prime_utr;Parent=Msa1161240-mRNA-1 |
| chr7_4 | CDS | 51497043 | 51497102 | 51497043 | ID=Msa1161240-mRNA-1:cds;Parent=Msa1161240-mRNA-1 |
| chr7_4 | CDS | 51497674 | 51497761 | 51497674 | ID=Msa1161240-mRNA-1:cds;Parent=Msa1161240-mRNA-1 |
| chr7_4 | CDS | 51498581 | 51498711 | 51498581 | ID=Msa1161240-mRNA-1:cds;Parent=Msa1161240-mRNA-1 |
| chr7_4 | CDS | 51498810 | 51499142 | 51498810 | ID=Msa1161240-mRNA-1:cds;Parent=Msa1161240-mRNA-1 |
| chr7_4 | three_prime_UTR | 51499143 | 51499555 | 51499143 | ID=Msa1161240-mRNA-1:three_prime_utr;Parent=Msa1161240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
