Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117560 | XP_003624883.1 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.48e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117560 | sp|Q9M612|NACA_PINTA | 74.359 | 195 | 43 | 4 | 11 | 203 | 16 | 205 | 1.40e-83 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117560 | G7L4T7 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 7.07e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006430 | Msa1117560 | 0.840681 | 7.508853e-58 | -8.615850e-47 |
| Msa0029240 | Msa1117560 | 0.810781 | 9.717988e-51 | -8.615850e-47 |
| Msa0079180 | Msa1117560 | 0.801090 | 1.061097e-48 | -8.615850e-47 |
| Msa0109900 | Msa1117560 | 0.803295 | 3.732077e-49 | -8.615850e-47 |
| Msa0692040 | Msa1117560 | -0.811508 | 6.759677e-51 | -8.615850e-47 |
| Msa0748970 | Msa1117560 | 0.804412 | 2.187639e-49 | -8.615850e-47 |
| Msa0828850 | Msa1117560 | 0.810911 | 9.109406e-51 | -8.615850e-47 |
| Msa0832340 | Msa1117560 | 0.810480 | 1.128622e-50 | -8.615850e-47 |
| Msa0127800 | Msa1117560 | 0.802391 | 5.736571e-49 | -8.615850e-47 |
| Msa0145190 | Msa1117560 | 0.804236 | 2.379915e-49 | -8.615850e-47 |
| Msa0388950 | Msa1117560 | 0.803299 | 3.725382e-49 | -8.615850e-47 |
| Msa0401560 | Msa1117560 | 0.801466 | 8.884112e-49 | -8.615850e-47 |
| Msa0446270 | Msa1117560 | 0.800708 | 1.269823e-48 | -8.615850e-47 |
| Msa0455760 | Msa1117560 | 0.812683 | 3.748168e-51 | -8.615850e-47 |
| Msa0481280 | Msa1117560 | 0.801284 | 9.683884e-49 | -8.615850e-47 |
| Msa1075650 | Msa1117560 | 0.811983 | 5.327774e-51 | -8.615850e-47 |
| Msa0303150 | Msa1117560 | 0.804258 | 2.354883e-49 | -8.615850e-47 |
| Msa0342750 | Msa1117560 | 0.818244 | 2.169273e-52 | -8.615850e-47 |
| Msa1109680 | Msa1117560 | 0.811575 | 6.537364e-51 | -8.615850e-47 |
| Msa1117530 | Msa1117560 | 0.831537 | 1.577765e-55 | -8.615850e-47 |
| Msa1117560 | Msa1161240 | 0.916560 | 1.537084e-85 | -8.615850e-47 |
| Msa1117560 | Msa1181250 | 0.827976 | 1.161490e-54 | -8.615850e-47 |
| Msa1117560 | Msa1181330 | 0.827553 | 1.467982e-54 | -8.615850e-47 |
| Msa1117560 | Msa1313140 | 0.804821 | 1.797353e-49 | -8.615850e-47 |
| Msa1117560 | Msa1392780 | 0.800219 | 1.597262e-48 | -8.615850e-47 |
| Msa1117560 | Msa1466540 | 0.805484 | 1.305676e-49 | -8.615850e-47 |
| Msa0510420 | Msa1117560 | 0.800417 | 1.455780e-48 | -8.615850e-47 |
| Msa0538600 | Msa1117560 | 0.810471 | 1.133802e-50 | -8.615850e-47 |
| Msa0901070 | Msa1117560 | 0.806883 | 6.624643e-50 | -8.615850e-47 |
| Msa0925250 | Msa1117560 | 0.805575 | 1.249542e-49 | -8.615850e-47 |
| Msa0925290 | Msa1117560 | 0.803039 | 4.215866e-49 | -8.615850e-47 |
| Msa0927380 | Msa1117560 | 0.818901 | 1.539068e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117560 | MtrunA17_Chr7g0255421 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.36e-146 | 405 |
| Msa1117560 | MtrunA17_Chr3g0128041 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.21e-67 | 206 |
| Msa1117560 | MtrunA17_Chr3g0128051 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 6.82e-59 | 184 |
| Msa1117560 | MtrunA17_Chr3g0128591 | 56.303 | 119 | 41 | 3 | 87 | 203 | 390 | 499 | 5.19e-30 | 115 |
| Msa1117560 | MtrunA17_Chr3g0128571 | 78.571 | 42 | 9 | 0 | 161 | 202 | 21 | 62 | 2.42e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117560 | AT3G12390.1 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 2.06e-77 | 231 |
| Msa1117560 | AT5G13850.1 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 1.11e-75 | 226 |
| Msa1117560 | AT3G49470.1 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.53e-67 | 206 |
| Msa1117560 | AT3G49470.2 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.36e-61 | 192 |
| Msa1117560 | AT4G10480.2 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 3.81e-61 | 190 |
| Msa1117560 | AT4G10480.1 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 7.24e-61 | 189 |
| Msa1117560 | AT1G33040.1 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 6.61e-59 | 184 |
Find 62 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTAGTACTTTAGATTT+TGG | 0.129061 | 7_3:+65988585 | Msa1117560:three_prime_UTR |
| TCTGACACCTACATCATATT+TGG | 0.140657 | 7_3:+65988289 | Msa1117560:CDS |
| CAAGAAGCTCTTCTTGGGTT+TGG | 0.250426 | 7_3:-65986484 | None:intergenic |
| CTGACACCTACATCATATTT+GGG | 0.293613 | 7_3:+65988290 | Msa1117560:CDS |
| GCACCCGCATTGGTCAAATT+AGG | 0.316419 | 7_3:-65988376 | None:intergenic |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 7_3:-65988424 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | 7_3:-65986490 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTT+GGG | 0.331123 | 7_3:-65986483 | None:intergenic |
| CTTGTTTCGGTTTGAAATAG+TGG | 0.344036 | 7_3:+65988648 | Msa1117560:three_prime_UTR |
| TGGCCAAAGGATTTGAAAAC+AGG | 0.355884 | 7_3:-65988929 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 7_3:+65988540 | Msa1117560:CDS |
| CTCGGAATGAAAGCTGTTAC+TGG | 0.360803 | 7_3:+65988089 | Msa1117560:CDS |
| GCTTTAACAGCTCTTGATCT+TGG | 0.362012 | 7_3:-65988499 | None:intergenic |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 7_3:-65988265 | None:intergenic |
| TTTCGTTTGTGTGTTGTGTT+TGG | 0.375646 | 7_3:+65986411 | None:intergenic |
| TTCTTGGGTTTGGGCAGTCA+TGG | 0.386669 | 7_3:-65986474 | None:intergenic |
| AACAAATTAATGCTCAGAAT+TGG | 0.398318 | 7_3:+65988567 | Msa1117560:exon |
| GGAGCAATACCAGAGGATTC+CGG | 0.409321 | 7_3:-65988403 | None:intergenic |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 7_3:-65988554 | None:intergenic |
| CTACGACCAGCTGTCATTCT+CGG | 0.428915 | 7_3:-65988779 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 7_3:-65988461 | None:intergenic |
| TATAGAACACAGCAAAGGTT+TGG | 0.446403 | 7_3:-65988813 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.446621 | 7_3:-65986489 | None:intergenic |
| GACCAATGCGGGTGCAAAGC+CGG | 0.454016 | 7_3:+65988384 | Msa1117560:CDS |
| AAATTGTTCTTTAGCACTCT+AGG | 0.468977 | 7_3:+65988874 | Msa1117560:three_prime_UTR |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | 7_3:+65988351 | Msa1117560:CDS |
| TTCCGGCTTTGCACCCGCAT+TGG | 0.473962 | 7_3:-65988386 | None:intergenic |
| TCATCGTCATCCTCGACTAC+AGG | 0.490581 | 7_3:-65987116 | None:intergenic |
| GGTGCAAAGCCGGAATCCTC+TGG | 0.494289 | 7_3:+65988394 | Msa1117560:CDS |
| ATGATGTAGGTGTCAGAAGT+TGG | 0.509913 | 7_3:-65988283 | None:intergenic |
| AATACATAGCCACGCAATGA+AGG | 0.511286 | 7_3:-65988839 | None:intergenic |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 7_3:+65988459 | Msa1117560:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | 7_3:+65988373 | Msa1117560:CDS |
| CGCAAGGCAATGCTTAAACT+CGG | 0.521577 | 7_3:+65988071 | Msa1117560:CDS |
| AACAAAGCAAAGGTAAAGGT+TGG | 0.531441 | 7_3:-65988675 | None:intergenic |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 7_3:-65988460 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 7_3:+65988430 | Msa1117560:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | 7_3:+65988014 | Msa1117560:intron |
| ATAGAACAAAGCAAAGGTAA+AGG | 0.545733 | 7_3:-65988679 | None:intergenic |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | 7_3:-65988533 | None:intergenic |
| TGTTCTTTAGCACTCTAGGT+TGG | 0.555273 | 7_3:+65988878 | Msa1117560:three_prime_UTR |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 7_3:+65988472 | Msa1117560:CDS |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | 7_3:+65988517 | Msa1117560:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 7_3:+65988333 | Msa1117560:CDS |
| AGCTTCCCCAAATATGATGT+AGG | 0.598188 | 7_3:-65988296 | None:intergenic |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 7_3:+65988444 | Msa1117560:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 7_3:+65988414 | Msa1117560:CDS |
| CGAATGCCGAGAATGACAGC+TGG | 0.613710 | 7_3:+65988773 | Msa1117560:three_prime_UTR |
| TCTATATTACCTTCATTGCG+TGG | 0.615723 | 7_3:+65988830 | Msa1117560:three_prime_UTR |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 7_3:+65988456 | Msa1117560:CDS |
| GCATGATGAGCCTGTAGTCG+AGG | 0.640360 | 7_3:+65987106 | Msa1117560:intron |
| TGACGAAGATGACGATGATG+AGG | 0.642696 | 7_3:+65987154 | Msa1117560:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | 7_3:+65988018 | Msa1117560:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | 7_3:+65988372 | Msa1117560:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | 7_3:+65988055 | Msa1117560:CDS |
| GGTAATATAGAACACAGCAA+AGG | 0.652612 | 7_3:-65988818 | None:intergenic |
| TGACACCTACATCATATTTG+GGG | 0.656598 | 7_3:+65988291 | Msa1117560:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 7_3:-65988410 | None:intergenic |
| CATAAAATAGAACAAAGCAA+AGG | 0.674768 | 7_3:-65988685 | None:intergenic |
| AGTCGAGGATGACGATGATG+AGG | 0.675870 | 7_3:+65987121 | Msa1117560:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | 7_3:+65987130 | Msa1117560:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | 7_3:+65987173 | Msa1117560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAATAAATAAAT+TGG | - | chr7_3:65986565-65986584 | None:intergenic | 0.0% |
| !! | AAAATAAATAAATAAATTGG+AGG | - | chr7_3:65986562-65986581 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAGTTCAGTTTT+TGG | + | chr7_3:65986578-65986597 | Msa1117560:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | chr7_3:65986660-65986679 | Msa1117560:intron | 15.0% |
| !!! | GATTTTATGAATAAATTGAA+AGG | + | chr7_3:65986803-65986822 | Msa1117560:intron | 15.0% |
| !! | ATGTTACAATGAAAAAAAAA+TGG | + | chr7_3:65986841-65986860 | Msa1117560:intron | 15.0% |
| !! | TAAACAATAAAAAAGAATAC+CGG | - | chr7_3:65987489-65987508 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTTTCTATTGC+AGG | + | chr7_3:65987993-65988012 | Msa1117560:intron | 15.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | chr7_3:65986659-65986678 | Msa1117560:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+AGG | + | chr7_3:65986753-65986772 | Msa1117560:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCA+GGG | + | chr7_3:65986754-65986773 | Msa1117560:intron | 20.0% |
| !! | TTATTCATAAAATCATGACA+TGG | - | chr7_3:65986797-65986816 | None:intergenic | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | chr7_3:65986931-65986950 | Msa1117560:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | chr7_3:65987351-65987370 | Msa1117560:intron | 20.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | chr7_3:65987352-65987371 | Msa1117560:intron | 20.0% |
| !!! | TTATTCCTTTATTTCATTTG+AGG | + | chr7_3:65987402-65987421 | Msa1117560:intron | 20.0% |
| !!! | TCTGAAAGAAGTTGATTTTT+GGG | - | chr7_3:65986450-65986469 | None:intergenic | 25.0% |
| !!! | TTCTGAAAGAAGTTGATTTT+TGG | - | chr7_3:65986451-65986470 | None:intergenic | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | chr7_3:65986608-65986627 | Msa1117560:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | chr7_3:65986622-65986641 | None:intergenic | 25.0% |
| !!! | GGTTTAGTTTTTGATGTTTT+TGG | + | chr7_3:65986629-65986648 | Msa1117560:intron | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | chr7_3:65986692-65986711 | Msa1117560:intron | 25.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | chr7_3:65986693-65986712 | Msa1117560:intron | 25.0% |
| ! | ATGTATTTGTGTATCTATAG+CGG | + | chr7_3:65986895-65986914 | Msa1117560:intron | 25.0% |
| ! | TCGTAAACTTATAAGTATAG+TGG | + | chr7_3:65987022-65987041 | Msa1117560:intron | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | chr7_3:65987304-65987323 | Msa1117560:intron | 25.0% |
| ! | TTCATTTAAAAGTTCAACAC+CGG | + | chr7_3:65987467-65987486 | Msa1117560:intron | 25.0% |
| ! | TAAATAAAGAACAACTGAGA+AGG | - | chr7_3:65987596-65987615 | None:intergenic | 25.0% |
| !! | TCTTTATTTAGTGTATGTTG+TGG | + | chr7_3:65987606-65987625 | Msa1117560:intron | 25.0% |
| !! | CTTTATTTAGTGTATGTTGT+GGG | + | chr7_3:65987607-65987626 | Msa1117560:intron | 25.0% |
| ! | TTCAGTGTAATTACAAAAGT+CGG | - | chr7_3:65987773-65987792 | None:intergenic | 25.0% |
| !! | TTTTTCCGTTCTATCAATAT+TGG | + | chr7_3:65988179-65988198 | Msa1117560:intron | 25.0% |
| ! | ACATTCCAATATTGATAGAA+CGG | - | chr7_3:65988187-65988206 | None:intergenic | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | chr7_3:65988557-65988576 | None:intergenic | 25.0% |
| ! | AACAAATTAATGCTCAGAAT+TGG | + | chr7_3:65988567-65988586 | Msa1117560:exon | 25.0% |
| !!! | ATTGGTAGTACTTTAGATTT+TGG | + | chr7_3:65988585-65988604 | Msa1117560:three_prime_UTR | 25.0% |
| !!! | CATTTTTTTTGCTCTTGTTT+CGG | + | chr7_3:65988635-65988654 | Msa1117560:three_prime_UTR | 25.0% |
| ! | CATAAAATAGAACAAAGCAA+AGG | - | chr7_3:65988688-65988707 | None:intergenic | 25.0% |
| !!! | GTTTTTGAAATCAGGGTTTT+TGG | + | chr7_3:65986761-65986780 | Msa1117560:intron | 30.0% |
| ATAGCATTCCTTGAGTAATT+TGG | + | chr7_3:65987269-65987288 | Msa1117560:intron | 30.0% | |
| AATTCCTACCAAATTACTCA+AGG | - | chr7_3:65987280-65987299 | None:intergenic | 30.0% | |
| GAAGACCTCAAATGAAATAA+AGG | - | chr7_3:65987410-65987429 | None:intergenic | 30.0% | |
| TATTCTGGTACAGACTAATT+TGG | - | chr7_3:65987893-65987912 | None:intergenic | 30.0% | |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | chr7_3:65987908-65987927 | None:intergenic | 30.0% |
| CAAAAAAACAACAGCAAAAG+TGG | - | chr7_3:65987945-65987964 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTGCATGAACTG+AGG | + | chr7_3:65987954-65987973 | Msa1117560:intron | 30.0% |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | chr7_3:65988002-65988021 | Msa1117560:intron | 30.0% |
| ! | GTACTTTAGATTTTGGATTG+TGG | + | chr7_3:65988592-65988611 | Msa1117560:three_prime_UTR | 30.0% |
| ATAGAACAAAGCAAAGGTAA+AGG | - | chr7_3:65988682-65988701 | None:intergenic | 30.0% | |
| AAATTGTTCTTTAGCACTCT+AGG | + | chr7_3:65988874-65988893 | Msa1117560:three_prime_UTR | 30.0% | |
| ! | AAACCTGTTTTCAAATCCTT+TGG | + | chr7_3:65988926-65988945 | Msa1117560:three_prime_UTR | 30.0% |
| !! | AAGAAGTTGATTTTTGGGAG+CGG | - | chr7_3:65986445-65986464 | None:intergenic | 35.0% |
| CATTCCTTGAGTAATTTGGT+AGG | + | chr7_3:65987273-65987292 | Msa1117560:intron | 35.0% | |
| TTGAGGTCTTCATTTAACAC+TGG | + | chr7_3:65987419-65987438 | Msa1117560:intron | 35.0% | |
| ! | TGATGTTTTGCATGGTTTGA+TGG | + | chr7_3:65987543-65987562 | Msa1117560:intron | 35.0% |
| ! | ATGGTTTGATGGTACAAAGT+TGG | + | chr7_3:65987554-65987573 | Msa1117560:intron | 35.0% |
| !! | AATTACAAAAGTCGGTGTTG+TGG | - | chr7_3:65987765-65987784 | None:intergenic | 35.0% |
| ! | CTGACAAGGTACATGTATTT+TGG | - | chr7_3:65987919-65987938 | None:intergenic | 35.0% |
| CAAAATACATGTACCTTGTC+AGG | + | chr7_3:65987917-65987936 | Msa1117560:intron | 35.0% | |
| TCTGACACCTACATCATATT+TGG | + | chr7_3:65988289-65988308 | Msa1117560:CDS | 35.0% | |
| CTGACACCTACATCATATTT+GGG | + | chr7_3:65988290-65988309 | Msa1117560:CDS | 35.0% | |
| TGACACCTACATCATATTTG+GGG | + | chr7_3:65988291-65988310 | Msa1117560:CDS | 35.0% | |
| ! | CTTGTTTCGGTTTGAAATAG+TGG | + | chr7_3:65988648-65988667 | Msa1117560:three_prime_UTR | 35.0% |
| AACAAAGCAAAGGTAAAGGT+TGG | - | chr7_3:65988678-65988697 | None:intergenic | 35.0% | |
| TATAGAACACAGCAAAGGTT+TGG | - | chr7_3:65988816-65988835 | None:intergenic | 35.0% | |
| GGTAATATAGAACACAGCAA+AGG | - | chr7_3:65988821-65988840 | None:intergenic | 35.0% | |
| TCTATATTACCTTCATTGCG+TGG | + | chr7_3:65988830-65988849 | Msa1117560:three_prime_UTR | 35.0% | |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | chr7_3:65986486-65986505 | None:intergenic | 40.0% | |
| CCTTCACGAAATGCAAAATG+AGG | - | chr7_3:65987242-65987261 | None:intergenic | 40.0% | |
| ! | CCTCATTTTGCATTTCGTGA+AGG | + | chr7_3:65987239-65987258 | Msa1117560:intron | 40.0% |
| ! | TACAGCTGTGATGTTTTGCA+TGG | + | chr7_3:65987535-65987554 | Msa1117560:intron | 40.0% |
| GTGCAGGTTAGACAAAATCA+CGG | - | chr7_3:65987646-65987665 | None:intergenic | 40.0% | |
| ! | GACAGTACCATGATTTGTCA+CGG | - | chr7_3:65987672-65987691 | None:intergenic | 40.0% |
| ATGAACTGAGGCTACAATGA+TGG | + | chr7_3:65987966-65987985 | Msa1117560:intron | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | chr7_3:65988045-65988064 | None:intergenic | 40.0% |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | chr7_3:65988055-65988074 | Msa1117560:CDS | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | chr7_3:65988268-65988287 | None:intergenic | 40.0% | |
| ATGATGTAGGTGTCAGAAGT+TGG | - | chr7_3:65988286-65988305 | None:intergenic | 40.0% | |
| AGCTTCCCCAAATATGATGT+AGG | - | chr7_3:65988299-65988318 | None:intergenic | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | chr7_3:65988456-65988475 | Msa1117560:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | chr7_3:65988463-65988482 | None:intergenic | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | chr7_3:65988502-65988521 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | chr7_3:65988540-65988559 | Msa1117560:CDS | 40.0% | |
| !!! | GTGGAGCTATTTTTCTTTGC+TGG | + | chr7_3:65988611-65988630 | Msa1117560:three_prime_UTR | 40.0% |
| AATACATAGCCACGCAATGA+AGG | - | chr7_3:65988842-65988861 | None:intergenic | 40.0% | |
| TGTTCTTTAGCACTCTAGGT+TGG | + | chr7_3:65988878-65988897 | Msa1117560:three_prime_UTR | 40.0% | |
| TGGCCAAAGGATTTGAAAAC+AGG | - | chr7_3:65988932-65988951 | None:intergenic | 40.0% | |
| !!! | AGCTACACATTTTTGGCCAA+AGG | - | chr7_3:65988945-65988964 | None:intergenic | 40.0% |
| ! | GCGACATAGCTACACATTTT+TGG | - | chr7_3:65988952-65988971 | None:intergenic | 40.0% |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | chr7_3:65986487-65986506 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | chr7_3:65986492-65986511 | None:intergenic | 45.0% | |
| TGACGAAGATGACGATGATG+AGG | + | chr7_3:65987154-65987173 | Msa1117560:CDS | 45.0% | |
| ! | GTACCATGATTTGTCACGGT+GGG | - | chr7_3:65987668-65987687 | None:intergenic | 45.0% |
| ! | AGTACCATGATTTGTCACGG+TGG | - | chr7_3:65987669-65987688 | None:intergenic | 45.0% |
| GTACTGTCGTAAACGAAGCA+CGG | + | chr7_3:65987684-65987703 | Msa1117560:intron | 45.0% | |
| !! | TACAAAAGTCGGTGTTGTGG+CGG | - | chr7_3:65987762-65987781 | None:intergenic | 45.0% |
| CTTACGAGTCCTATGAAGCA+CGG | - | chr7_3:65987848-65987867 | None:intergenic | 45.0% | |
| AGCAAAAGTGGATCCTGACA+AGG | - | chr7_3:65987933-65987952 | None:intergenic | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | chr7_3:65988014-65988033 | Msa1117560:intron | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | chr7_3:65988018-65988037 | Msa1117560:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | chr7_3:65988054-65988073 | None:intergenic | 45.0% |
| CGCAAGGCAATGCTTAAACT+CGG | + | chr7_3:65988071-65988090 | Msa1117560:CDS | 45.0% | |
| CTCGGAATGAAAGCTGTTAC+TGG | + | chr7_3:65988089-65988108 | Msa1117560:CDS | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | chr7_3:65988372-65988391 | Msa1117560:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | chr7_3:65988373-65988392 | Msa1117560:CDS | 45.0% | |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | chr7_3:65988413-65988432 | None:intergenic | 45.0% |
| TGGTATTGCTCCAGAAGATG+AGG | + | chr7_3:65988414-65988433 | Msa1117560:CDS | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | chr7_3:65988427-65988446 | None:intergenic | 45.0% | |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | chr7_3:65988459-65988478 | Msa1117560:CDS | 45.0% |
| CACCACCAACTCAATATCCT+TGG | - | chr7_3:65988464-65988483 | None:intergenic | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | chr7_3:65988517-65988536 | Msa1117560:CDS | 45.0% | |
| !!! | TTTAATTAATAGATTTTTAA+AGG | + | chr7_3:65988901-65988920 | Msa1117560:three_prime_UTR | 5.0% |
| TTCTTGGGTTTGGGCAGTCA+TGG | - | chr7_3:65986477-65986496 | None:intergenic | 50.0% | |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | chr7_3:65986493-65986512 | None:intergenic | 50.0% | |
| TCATCGTCATCCTCGACTAC+AGG | - | chr7_3:65987119-65987138 | None:intergenic | 50.0% | |
| AGTCGAGGATGACGATGATG+AGG | + | chr7_3:65987121-65987140 | Msa1117560:CDS | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | chr7_3:65987130-65987149 | Msa1117560:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | chr7_3:65987173-65987192 | Msa1117560:CDS | 50.0% | |
| AACGAAGCACGGACACTTCT+CGG | + | chr7_3:65987695-65987714 | Msa1117560:intron | 50.0% | |
| GATTAGGCGTGTCCTAGTGT+CGG | + | chr7_3:65987717-65987736 | Msa1117560:intron | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | chr7_3:65988333-65988352 | Msa1117560:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | chr7_3:65988379-65988398 | None:intergenic | 50.0% |
| GGAGCAATACCAGAGGATTC+CGG | - | chr7_3:65988406-65988425 | None:intergenic | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | chr7_3:65988430-65988449 | Msa1117560:CDS | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | chr7_3:65988536-65988555 | None:intergenic | 50.0% | |
| CTACGACCAGCTGTCATTCT+CGG | - | chr7_3:65988782-65988801 | None:intergenic | 50.0% | |
| GCATGATGAGCCTGTAGTCG+AGG | + | chr7_3:65987106-65987125 | Msa1117560:intron | 55.0% | |
| ! | TGATTTGTCACGGTGGGTGC+AGG | - | chr7_3:65987662-65987681 | None:intergenic | 55.0% |
| GCACCCACCGTGACAAATCA+TGG | + | chr7_3:65987662-65987681 | Msa1117560:intron | 55.0% | |
| GCACGGACACTTCTCGGATT+AGG | + | chr7_3:65987701-65987720 | Msa1117560:intron | 55.0% | |
| CACGACACGTATCCGACACT+AGG | - | chr7_3:65987732-65987751 | None:intergenic | 55.0% | |
| TGTGTCAGCGTGTCAGTGTC+CGG | + | chr7_3:65987819-65987838 | Msa1117560:intron | 55.0% | |
| GTCCTATGAAGCACGGACAC+CGG | - | chr7_3:65987841-65987860 | None:intergenic | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | chr7_3:65988351-65988370 | Msa1117560:CDS | 55.0% | |
| CGAGACTGGTGTAGATCCCA+AGG | + | chr7_3:65988444-65988463 | Msa1117560:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | chr7_3:65988472-65988491 | Msa1117560:CDS | 55.0% |
| CGAATGCCGAGAATGACAGC+TGG | + | chr7_3:65988773-65988792 | Msa1117560:three_prime_UTR | 55.0% | |
| !! | AGTCGGTGTTGTGGCGGTGT+CGG | - | chr7_3:65987756-65987775 | None:intergenic | 60.0% |
| GTCCGGTGTCCGTGCTTCAT+AGG | + | chr7_3:65987836-65987855 | Msa1117560:intron | 60.0% | |
| GACCAATGCGGGTGCAAAGC+CGG | + | chr7_3:65988384-65988403 | Msa1117560:CDS | 60.0% | |
| TTCCGGCTTTGCACCCGCAT+TGG | - | chr7_3:65988389-65988408 | None:intergenic | 60.0% | |
| GGTGCAAAGCCGGAATCCTC+TGG | + | chr7_3:65988394-65988413 | Msa1117560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65986413 | 65988988 | 65986413 | ID=Msa1117560;Name=Msa1117560 |
| chr7_3 | mRNA | 65986413 | 65988988 | 65986413 | ID=Msa1117560-mRNA-1;Parent=Msa1117560;Name=Msa1117560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|1|1|4|412|203 |
| chr7_3 | exon | 65986413 | 65986535 | 65986413 | ID=Msa1117560-mRNA-1:exon:15789;Parent=Msa1117560-mRNA-1 |
| chr7_3 | exon | 65987107 | 65987194 | 65987107 | ID=Msa1117560-mRNA-1:exon:15790;Parent=Msa1117560-mRNA-1 |
| chr7_3 | exon | 65988015 | 65988145 | 65988015 | ID=Msa1117560-mRNA-1:exon:15791;Parent=Msa1117560-mRNA-1 |
| chr7_3 | exon | 65988244 | 65988988 | 65988244 | ID=Msa1117560-mRNA-1:exon:15792;Parent=Msa1117560-mRNA-1 |
| chr7_3 | five_prime_UTR | 65986413 | 65986475 | 65986413 | ID=Msa1117560-mRNA-1:five_prime_utr;Parent=Msa1117560-mRNA-1 |
| chr7_3 | CDS | 65986476 | 65986535 | 65986476 | ID=Msa1117560-mRNA-1:cds;Parent=Msa1117560-mRNA-1 |
| chr7_3 | CDS | 65987107 | 65987194 | 65987107 | ID=Msa1117560-mRNA-1:cds;Parent=Msa1117560-mRNA-1 |
| chr7_3 | CDS | 65988015 | 65988145 | 65988015 | ID=Msa1117560-mRNA-1:cds;Parent=Msa1117560-mRNA-1 |
| chr7_3 | CDS | 65988244 | 65988576 | 65988244 | ID=Msa1117560-mRNA-1:cds;Parent=Msa1117560-mRNA-1 |
| chr7_3 | three_prime_UTR | 65988577 | 65988988 | 65988577 | ID=Msa1117560-mRNA-1:three_prime_utr;Parent=Msa1117560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
